Citrus Sinensis ID: 003746
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 798 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.933 | 0.370 | 1e-165 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.877 | 0.944 | 0.400 | 1e-164 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.819 | 0.886 | 0.392 | 1e-151 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.687 | 0.885 | 0.449 | 1e-146 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.691 | 0.854 | 0.430 | 1e-144 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.908 | 0.896 | 0.346 | 1e-142 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.899 | 0.919 | 0.345 | 1e-140 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.691 | 0.901 | 0.431 | 1e-140 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.649 | 0.904 | 0.459 | 1e-139 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.697 | 0.881 | 0.424 | 1e-139 |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 309/834 (37%), Positives = 482/834 (57%), Gaps = 48/834 (5%)
Query: 7 LAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAAS 66
LA ++T S +N K T + L+ C++ + + GL D +
Sbjct: 15 LATTTTTKPSLLNQSKCTKAT------PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68
Query: 67 RLIKFSTDLLPFIEMSYSFKIFAFLES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
+L+ S +L +S++ ++F ES F++N+++R Y + +AI L+ M+N+
Sbjct: 69 KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128
Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
+ D YT+P A A + G IH ++K G+ D++V N+L++ YA CG+L +A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188
Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEA----------------------------- 216
RK+FDE ++VSW S++ GY D ++A
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 217 -----------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
FI N E N + ++++ ++ + + A RLF E +L +A+
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308
Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
S Y + + EAL +F M+D V D + ++S +S+C+ L + G S H ++ G
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368
Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
E + N+ NALI MY C TA ++FD N +++WNS+++GY++ G V+ A F+
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428
Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQ 444
M EK++VSW+T+ISG Q F E + +F MQ G+ D T++S+ SAC HL ALD
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
KWI+ YI KNG++++ LGTTL+DM+ + G ++A+ +F+ + VS+W A I AM
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
G A++++E+F +M + G+ P+ + FVG L AC H GLV +G F SM++ H + P
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608
Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
HYGCMVDLLGRAG+L+EA +LIE MPM P+ W +LL AC+ G+ EM K+ L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668
Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
P+ G +VLLSN++AS GRW+D+ +VR M +G+ K PG S I+ G HEF +GD +
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728
Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
HP++ I+ MLDE++++ G+ PD V D+D++EK L RHSEKLA+A+GLI+ +
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788
Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
IRI+KNLR+C+DCH+ AKF S+ ++REI++RD +RFH+ + G CSC DFW
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1494), Expect = e-164, Method: Compositional matrix adjust.
Identities = 306/764 (40%), Positives = 454/764 (59%), Gaps = 64/764 (8%)
Query: 37 LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
L C++ + I +QMI GL +A S+LI+F F + Y+ +F ++ PN
Sbjct: 40 LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99
Query: 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
I+NTM R + + P A+ LY M++ + ++YT+P + ++ A + EG+ IH H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159
Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
VLK G D D+YV+ +LI+MY G L A K+FD+SP D+VS+ +++ GY + +E A
Sbjct: 160 VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219
Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
+ +++++P +++++ N+MI + GN EA LFK+M K +
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN------------------ 261
Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
V DE +V+V+SACA ++ G VH G + + NALI
Sbjct: 262 -------------VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308
Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
+YS CGE+ TA LF+ D+ISWN++I G
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGG--------------------------- 341
Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RK 454
Y + + E L LF EM G P++ T++S++ AC HL A+D G+WIH YI R
Sbjct: 342 ----YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
G+ S L T+LIDMY K G ++ A +VF+ K +SSWNA+I GFAM+G AD S ++
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457
Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
FS M+K G+ P++ITFVG+L AC H G++D G F +M Q++++ P +HYGCM+DLLG
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLG 517
Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
+G+ KEAEE+I M M PD W +LL ACK HG+ E+GE L++++P++ G +VL
Sbjct: 518 HSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVL 577
Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
LSNI+AS GRW++V + R ++ +G+ K+PGCS IE + ++HEF+ GD+ HP+ EI M
Sbjct: 578 LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637
Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
L+EM L+ G+ PDT EV ++++E KE L HSEKLAIAFGLI+ P + I+KN
Sbjct: 638 LEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 697
Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 698 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/698 (39%), Positives = 423/698 (60%), Gaps = 44/698 (6%)
Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNS 202
+S+ + K H H+++ G SD Y + L M A+ L ARK+FDE P + +WN+
Sbjct: 41 VSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNT 100
Query: 203 ILAGYVNA-----------DNVEEAKFIYNKMP--------------------------- 224
++ Y + D V E++ NK
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKS 160
Query: 225 --ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
++ +NS+I + G++ AC++F + +KD+VSW+++I+ + Q ++AL LF
Sbjct: 161 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELF 220
Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
M V V +V VLSACA + ++ G V + + + + L NA++ MY+ C
Sbjct: 221 KKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC 280
Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
G I A++LFDA D ++W +M+ GY E AR + ++M +KD+V+W+ +IS Y
Sbjct: 281 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYE 340
Query: 403 QHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
Q+ + +E L +F E+Q ++ ++ TLVS +SAC + AL+ G+WIH+YI+K+G+++N
Sbjct: 341 QNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400
Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
+ + LI MY K G ++ + EVF+ E++ V W+A+I G AM+G +++++MF +M+++
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460
Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
V PN +TF V AC H GLVDE F+ M + + P KHY C+VD+LGR+G L++
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEK 520
Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
A + IE+MP+ P + WGALLGACK H + + E +L+EL+P +DG HVLLSNI+A
Sbjct: 521 AVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 580
Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
G+W++V E+R M G+ K PGCS IE +G+IHEFL+GD HP ++ L E+ +K
Sbjct: 581 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 640
Query: 702 LKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
LK GY P+ +V I++EE KE +L HSEKLAI +GLI+ P IR++KNLR+C D
Sbjct: 641 LKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGD 700
Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
CH+ AK IS+ +DREI+VRDR+RFHHF++G CSC DFW
Sbjct: 701 CHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/550 (44%), Positives = 348/550 (63%), Gaps = 1/550 (0%)
Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
+F + D W+ +I + ++ E +L+L+ M+ + S+L AC+NL+
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
+ T +HA K+G E + N+LI+ Y+ G A LFD D +SWNS+I G
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
Y+K G ++ A LF M EK+ +SW+TMISGY Q D E L LF EMQ+ + PD +L
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
+ +SAC L AL+QGKWIH+Y+ K ++++S+LG LIDMY K G ++ ALEVF ++
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310
Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
K V +W ALI G+A +G +++ F EM+K G+ PN ITF VL AC + GLV+EG
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370
Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
F SM +++ L+P +HYGC+VDLLGRAG+L EA+ I+ MP+ P+ WGALL AC+ H
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430
Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
+ E+GE +G L+ + P H G +V +NIHA +WD E R +M +GV K+PGCS I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD-IDQEEKETTLF 728
G HEFLAGDR+HP+I +I + M +KL+ GY P+ E+ D +D +E+E +
Sbjct: 491 SLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVH 550
Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
+HSEKLAI +GLI P IRIMKNLR+C DCH K IS+ + R+IV+RDR RFHHF+
Sbjct: 551 QHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFR 610
Query: 789 HGSCSCMDFW 798
G CSC D+W
Sbjct: 611 DGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/569 (43%), Positives = 372/569 (65%), Gaps = 17/569 (2%)
Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEE--ALVLFMNMI-DHRVMVDEVVVVSVLSA 303
A ++F +MP+++ SW+ +I + +++ + A+ LF M+ D V + SVL A
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137
Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF----------- 352
CA ++ G +H LA+K G + + L+ MY CG + A LF
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197
Query: 353 ---DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
+ +++ WN MI GY++ G + AR LFD M ++ VVSW+TMISGY+ + F +
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257
Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
+ +F EM+ IRP+ TLVSV+ A + L +L+ G+W+H Y +G++I+ +LG+ LID
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 317
Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
MY K G ++ A+ VF + V +W+A+I GFA++G A +++ F +M+++GV P+++
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
++ +L AC H GLV+EG R+F+ M+ LEP +HYGCMVDLLGR+G+L EAEE I +M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
P+ PD W ALLGAC+ G+ EMG+RV L+++ P G +V LSN++AS+G W +V
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
E+R M + + K PGCS+I+ +G++HEF+ D +HP+ EI++ML E++ KL+L GY P
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557
Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
T +V ++++E+KE L HSEK+A AFGLI+ SP PIRI+KNLRIC DCH++ K IS
Sbjct: 558 ITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLIS 617
Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
+ + R+I VRDR RFHHF+ GSCSCMD+W
Sbjct: 618 KVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 278/803 (34%), Positives = 436/803 (54%), Gaps = 78/803 (9%)
Query: 37 LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
L++C S K+ QIL + GL + F ++L+ + + + ++F ++S
Sbjct: 44 LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSL---FCRYGSVDEAARVFEPIDSKLN 100
Query: 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASALRLSVFEGKLIH 154
+++TM++ + + + +A+ + M ++V V N+TY L L V GK IH
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV--GKEIH 158
Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
++K+GF D++ L NMYA C ++ ARK+FD P DLVSWN+I+AGY
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218
Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
A + M E N+ S +++
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALV 278
Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
++ + G++ A +LF M ++++VSW+++I Y QNE +EA+++F M+D V +V
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338
Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
V+ L ACA+L ++ G +H L+V++G++
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLD----------------------------- 369
Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
N+ ++ NS+IS Y KC V+ A ++F + + +VSW+ MI G+AQ+ + + L+ F
Sbjct: 370 RNVSVV--NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427
Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
+M+ ++PD T VSVI+A L KWIH + ++ L N + T L+DMY K G
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487
Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
+ A +F E+ V++WNA+I G+ +G +LE+F EM+K + PN +TF+ V+
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547
Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
AC H GLV+ G + F M + + +E + HYG MVDLLGRAG L EA + I MP+ P V
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607
Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
+GA+LGAC+ H + E+ +L EL PD G+HVLL+NI+ + W+ V +VR M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667
Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
+R+G+ K PGCSM+E +H F +G HP +I L+++ +K GY PDT +
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLV 726
Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
++ + KE L HSEKLAI+FGL+ + I + KNLR+C DCH A K+IS RE
Sbjct: 727 LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786
Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
IVVRD RFHHFK+G+CSC D+W
Sbjct: 787 IVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 271/784 (34%), Positives = 433/784 (55%), Gaps = 66/784 (8%)
Query: 34 ETHLQKCQS----------FKQFTQILSQMILTGLIADTFAA-SRLIKFST--------D 74
+T +QK Q+ K++ +S + TG + R+ ++S+
Sbjct: 45 QTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISG 104
Query: 75 LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
L E + K+F + + +N M++ Y++ +A L+++M +V N
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164
Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
AQ V + + + D + + +DV N L++ Y + A LF
Sbjct: 165 SGYAQNGC----VDDARSVFDRMPEK---NDVSWN-ALLSAYVQNSKMEEACMLFKSREN 216
Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
LVSWN +L G+V + EA+ ++ M R++++ N++I + + G + EA +LF E
Sbjct: 217 WALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276
Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
P +D+ +W+A++S Y QN M EEA LF M + +EV
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVS------------------ 314
Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
NA++ Y + A++LFD ++ +WN+MI+GY +CG
Sbjct: 315 -----------------WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357
Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
+ +A+ LFD M ++D VSW+ MI+GY+Q E L LF++M+ G R + ++ S +S
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417
Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
C +VAL+ GK +H + K G + +G L+ MY K G ++ A ++F K + S
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477
Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
WN +I G++ +G + +L F MK+ G+ P++ T V VL AC H GLVD+G ++F +M
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537
Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
Q++ + PNS+HY CMVDLLGRAG+L++A L+++MP PD A WG LLGA + HG+ E+
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597
Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
E K+ ++P++ G +VLLSN++AS GRW DV ++R M +GV K+PG S IE
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657
Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
H F GD HP+ +EI L+E+ ++K GY T V D+++EEKE + HSE+L
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERL 717
Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
A+A+G++ +S PIR++KNLR+C DCH A K+++R R I++RD +RFHHFK GSCSC
Sbjct: 718 AVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSC 777
Query: 795 MDFW 798
D+W
Sbjct: 778 GDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/554 (43%), Positives = 358/554 (64%), Gaps = 2/554 (0%)
Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSAC 304
A ++ K L + +++I + ++ + E++ + ++ + + D V ++ AC
Sbjct: 59 ANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQAC 118
Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
L + + G VH + ++ G + ++Q LI +Y+ G + + K+F++ D +
Sbjct: 119 TGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRT 178
Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
+M++ +CG V AR LF+ M E+D ++W+ MISGYAQ + E L++F MQ G++
Sbjct: 179 AMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKV 238
Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
+ ++SV+SACT L ALDQG+W H+YI +N +KI L TTL+D+Y K G ++ A+EVF
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVF 298
Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
G EEK V +W++ + G AMNG +K LE+FS MK+ GVTPN +TFV VL C +G VD
Sbjct: 299 WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 358
Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
EG RHF+SM E +EP +HYGC+VDL RAG L++A +I+ MPM P A W +LL A
Sbjct: 359 EGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHA 418
Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
+ + + E+G +K++EL+ + G +VLLSNI+A WD+V VR M +GV K P
Sbjct: 419 SRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQP 478
Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
GCS++E NG +HEF GD++HP+ +ID + +++++L+L GY DT V FDID+EEKE
Sbjct: 479 GCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKE 538
Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
L HSEK AIAFG++++ PIRI+KNLR+C DCH + IS+ F+REI+VRDR+RF
Sbjct: 539 DALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRF 598
Query: 785 HHFKHGSCSCMDFW 798
HHFK G CSC FW
Sbjct: 599 HHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/525 (45%), Positives = 347/525 (66%), Gaps = 7/525 (1%)
Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
+++ M +HRV D +L + N + G HA + G++ ++ +L++MYS
Sbjct: 49 VYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS 108
Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
SCG++ +A+++FD + DL +WNS+++ Y K G ++ AR LFD M E++V+SWS +I+G
Sbjct: 109 SCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLING 168
Query: 401 YAQHDQFSETLSLFMEMQ-----HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
Y ++ E L LF EMQ +RP+E T+ +V+SAC L AL+QGKW+HAYI K
Sbjct: 169 YVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKY 228
Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEM 514
++I+ +LGT LIDMY K G ++ A VF+ +K V +++A+I AM GL D+ ++
Sbjct: 229 HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288
Query: 515 FSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
FSEM S + PN +TFVG+LGAC H GL++EG +F MI+E + P+ +HYGCMVDL
Sbjct: 289 FSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLY 348
Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
GR+G++KEAE I SMPM PDV WG+LL + GD + E ++L+EL P + G +V
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408
Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
LLSN++A GRW +V +R M +G+ K+PGCS +E G++HEF+ GD + + I
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468
Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
MLDE+ ++L+ GY DT EV D+++++KE L HSEKLAIAF L+ P P+RI+K
Sbjct: 469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIK 528
Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
NLRIC DCH K IS+ F REIVVRD +RFHHF+ GSCSC DFW
Sbjct: 529 NLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 367/563 (65%), Gaps = 6/563 (1%)
Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
+ G + + LF + DL ++A I+ N + ++A +L++ ++ + +E
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
S+L +C+ K+G +H +K G+ + L+ +Y+ G++ +A+K+FD
Sbjct: 134 SSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
L+S +MI+ Y K G+VE ARALFD+M E+D+VSW+ MI GYAQH ++ L LF ++
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 418 QHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
G +PDE T+V+ +SAC+ + AL+ G+WIH +++ + +++N + T LIDMY K G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLG 535
++ A+ VF+ T K + +WNA+I G+AM+G + +L +F+EM+ +G+ P +ITF+G L
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQ 369
Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
AC H GLV+EG R F SM QE+ ++P +HYGC+V LLGRAG LK A E I++M M D
Sbjct: 370 ACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADS 429
Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
W ++LG+CK HGD +G+ + L+ L + G +VLLSNI+AS G ++ V +VR +M
Sbjct: 430 VLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLM 489
Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
+G+VK PG S IE +HEF AGDR H + EI ML ++++++K GY P+T V
Sbjct: 490 KEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVL 549
Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
D+++ EKE +L HSE+LAIA+GLI+ P +P++I KNLR+C+DCHT K IS+ R+
Sbjct: 550 QDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRK 609
Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
IV+RDR+RFHHF GSCSC DFW
Sbjct: 610 IVMRDRNRFHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 798 | ||||||
| 225450539 | 808 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.981 | 0.753 | 0.0 | |
| 224124638 | 793 | predicted protein [Populus trichocarpa] | 0.987 | 0.993 | 0.753 | 0.0 | |
| 356569774 | 775 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.994 | 0.672 | 0.0 | |
| 449446125 | 809 | PREDICTED: pentatricopeptide repeat-cont | 0.912 | 0.899 | 0.707 | 0.0 | |
| 449485565 | 953 | PREDICTED: pentatricopeptide repeat-cont | 0.780 | 0.653 | 0.724 | 0.0 | |
| 296089800 | 640 | unnamed protein product [Vitis vinifera] | 0.771 | 0.962 | 0.582 | 0.0 | |
| 125543615 | 648 | hypothetical protein OsI_11297 [Oryza sa | 0.803 | 0.989 | 0.523 | 0.0 | |
| 115452665 | 648 | Os03g0314400 [Oryza sativa Japonica Grou | 0.803 | 0.989 | 0.523 | 0.0 | |
| 293336578 | 651 | uncharacterized protein LOC100382149 [Ze | 0.803 | 0.984 | 0.511 | 0.0 | |
| 242041125 | 650 | hypothetical protein SORBIDRAFT_01g03715 | 0.802 | 0.984 | 0.509 | 0.0 |
| >gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1266 bits (3275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/794 (75%), Positives = 687/794 (86%), Gaps = 1/794 (0%)
Query: 5 TKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFA 64
+KL LSS +KS+ N KP FKPTI LSILETHL C + KQF +ILSQMILTG I+DTFA
Sbjct: 16 SKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFA 75
Query: 65 ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
ASRL+KFSTD PFI + YS +IF +E+ NGF++NTMMRAYIQ N ++A+ LYKLM+
Sbjct: 76 ASRLLKFSTDS-PFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK 134
Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
NNVG DNYTYPL+ QA A+RL F GK IHDHVLK GFDSDVYV NTLINMYAVCG++
Sbjct: 135 NNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRD 194
Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNV 244
ARKLFDESPVLD VSWNSILAGYV +VEEAK I+++MP+RNI+ASNSMIVL G+ G V
Sbjct: 195 ARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQV 254
Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
EA +LF EM +KD+VSWSALIS YEQN MYEEALV+F+ M + + +DEVVVVSVLSAC
Sbjct: 255 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314
Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
A+L++VK G +H L +++GIE Y+NLQNALIHMYS GEI A+KLF+ HNLD ISWN
Sbjct: 315 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWN 374
Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
SMISG +KCGSVEKARALFD M EKD+VSWS +ISGYAQHD FSETL+LF EMQ IRP
Sbjct: 375 SMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRP 434
Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
DE LVSVISACTHL ALDQGKW+HAYIRKNGLK+N ILGTTL+DMYMK GCV+NALEVF
Sbjct: 435 DETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVF 494
Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
+G EEKGVSSWNALIIG A+NGL ++SL+MFSEMK +GV PNEITF+GVLGACRHMGLVD
Sbjct: 495 NGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVD 554
Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
EG HF SMI++H +EPN KHYGCMVDLLGRAG+L EAE+LIESMPM+PDVATWGALLGA
Sbjct: 555 EGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 614
Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
CKKHGD EMGERVGRKL+ELQPDHDGFHVLLSNI ASKG W+DVLEVRGMM ++GVVK P
Sbjct: 615 CKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTP 674
Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
GCS+IEANG++HEFLAGD+THP IN+++ ML+EMAK+LK+EGYAPDT EV+ DID+EEKE
Sbjct: 675 GCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKE 734
Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
TTLFRHSEKLAIAFGL+TISPP PIRIMKNLRICNDCHTAAK IS+A+ REIVVRDRHRF
Sbjct: 735 TTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRF 794
Query: 785 HHFKHGSCSCMDFW 798
H+FK G+CSCMD+W
Sbjct: 795 HYFKEGACSCMDYW 808
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1259 bits (3258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/796 (75%), Positives = 683/796 (85%), Gaps = 8/796 (1%)
Query: 5 TKLAHLSSTIKSSVNAKPIF--KPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADT 62
++L +LS K P F KPT+ L ILETHLQKCQ+ KQF QILSQMIL+G D+
Sbjct: 4 SRLNYLSKPFKI-----PTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDS 58
Query: 63 FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
FAASRL+KFST+L PFI ++ S++IF+ +E+PNGFI NTMM+ Y+QRN P +AI +YK M
Sbjct: 59 FAASRLLKFSTEL-PFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFM 117
Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
L +NV DNYTYP+L Q+ ++RL+ F+GK I DHVLK GFDSDVY+ NTLINMYAVCG+L
Sbjct: 118 LESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNL 177
Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242
S ARK+FD S VLD+VSWNS+LAGYV NVEEAK +Y++MPERN+IASNSMIVLFG+KG
Sbjct: 178 SDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKG 237
Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
NV EAC+LF EM +KDLVSWSALISCYEQNEMYEEAL+LF M + +MVDEVVV+SVLS
Sbjct: 238 NVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLS 297
Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
AC+ L VV G VH L VK+GIE Y+NLQNALIHMYSSC E+ TA+KLF LD IS
Sbjct: 298 ACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQIS 357
Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
WNSMISGY+KCG +EKARALFD+M +KD VSWS MISGYAQ D+F+ETL LF EMQ G
Sbjct: 358 WNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGT 417
Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
+PDE LVSVISACTHL ALDQGKWIHAYIRKNGLKIN ILGTTLI+MYMKLGCV++ALE
Sbjct: 418 KPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477
Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
VF G EEKGVS+WNALI+G AMNGL DKSL+ FSEMK+ GVTPNEITFV VLGACRHMGL
Sbjct: 478 VFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGL 537
Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
VDEGHRHFNSMIQEH++ PN KHYGCMVDLLGRAGMLKEAEELIESMPM+PDV+TWGALL
Sbjct: 538 VDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALL 597
Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
GACKK+GD+E GER+GRKLVEL PDHDGF+VLLSNI+ASKG W DVLEVRGMM + GVVK
Sbjct: 598 GACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657
Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
PGCSMIEA+G +HEFLAGD+THPQ I++MLDEMAKKLKLEGYAPDT EV+ DID+EE
Sbjct: 658 TPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEE 717
Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
KETTLFRHSEKLAIAFGLI I PP PIRI+KNLRICNDCHTAAK IS+AF+REIVVRDRH
Sbjct: 718 KETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRH 777
Query: 783 RFHHFKHGSCSCMDFW 798
RFHHFK GSCSCMD+W
Sbjct: 778 RFHHFKQGSCSCMDYW 793
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/775 (67%), Positives = 633/775 (81%), Gaps = 4/775 (0%)
Query: 28 INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
+ +S L++ LQ C+ + F Q+LSQ ILTGLI D +AASRLI FS+ + YS +I
Sbjct: 1 MKVSTLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRI 60
Query: 88 FAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
F L +PN F +NT+MRA++ +N P QA+ YKL L ++ D+YTYP+L Q A R+S
Sbjct: 61 FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120
Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
FEG+ +H H + +GFD DVYV NTL+N+YAVCG + +AR++F+ESPVLDLVSWN++LAG
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180
Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSA 264
YV A VEEA+ ++ MPERN IASNSMI LFGRKG V +A R+F + ++D+VSWSA
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240
Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
++SCYEQNEM EEALVLF+ M V VDEVVVVS LSAC+ + V+ G VH LAVK+G
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300
Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSMISGYLKCGSVEKARALF 383
+E Y++L+NALIH+YSSCGEI A ++FD G LDLISWNSMISGYL+CGS++ A LF
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360
Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
+M EKDVVSWS MISGYAQH+ FSE L+LF EMQ HG+RPDE LVS ISACTHL LD
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLD 420
Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
GKWIHAYI +N L++N IL TTLIDMYMK GCV+NALEVF+ EEKGVS+WNA+I+G A
Sbjct: 421 LGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLA 480
Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
MNG ++SL MF++MKK+G PNEITF+GVLGACRHMGLV++G +FNSMI EH++E N
Sbjct: 481 MNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANI 540
Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
KHYGCMVDLLGRAG+LKEAEELI+SMPM+PDVATWGALLGAC+KH D+EMGER+GRKL++
Sbjct: 541 KHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQ 600
Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
LQPDHDGFHVLLSNI+ASKG W +VLE+RG+M + GVVK PGCSMIEANG +HEFLAGD+
Sbjct: 601 LQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDK 660
Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
THPQIN+I++MLD +A KLK+EGY P T EV+ DID+EEKET LFRHSEKLA+AFGLITI
Sbjct: 661 THPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITI 720
Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
SPP PIR+ KNLRICNDCHT K IS+AFDR+IVVRDRHRFHHFKHG+CSCMDFW
Sbjct: 721 SPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/729 (70%), Positives = 607/729 (83%), Gaps = 1/729 (0%)
Query: 53 MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
M+LTG I +T+AASRLIKFST PFI + Y+ +IF F+E+ N F++N M+RAYIQ N P
Sbjct: 1 MLLTGFIRETYAASRLIKFSTHF-PFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 59
Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
A LYK ML+N +G DNYTYPLL QA ++R S +E K +H+HVLK GFDSDVYV NTL
Sbjct: 60 HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 119
Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232
IN ++VC +++ A ++F+ES VLD VSWNSILAGY+ NVEEAK IY++MPER+IIASN
Sbjct: 120 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 179
Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
SMIVLFG +G V EAC+LF EM +KD+V+WSALI+C++QNEMYEEA+ F+ M VMV
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV 239
Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
DEVV VS LSACANL VV G +H+L++KIG E YINLQNALI+MYS CG+I A KLF
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299
Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
D + LDLISWNSMISGYLKC V+ A+A+FD+M EKDVVSWS+MISGYAQ+D F ETL+
Sbjct: 300 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 359
Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
LF EMQ G +PDE TLVSVISAC L AL+QGKW+HAYI++NGL IN ILGTTLIDMYM
Sbjct: 360 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 419
Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
K GCV+ ALEVF+G EKG+S+WNALI+G AMNGL + SL+MFS MKK VTPNEITF+G
Sbjct: 420 KCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 479
Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
VLGACRHMGLVDEG HF SMI +H+++PN KHYGCMVDLLGRAG L+EAEEL+ MPM+
Sbjct: 480 VLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMT 539
Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
PDVATWGALLGACKKHGD EMG RVGRKL+ELQPDHDGFHVLLSNI+ASKG+WDDVLE+R
Sbjct: 540 PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIR 599
Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
GMM + V+KIPGCSMIEANG+IHEFLAGD+THP ++ I++ML EMA KLKLEGY PD
Sbjct: 600 GMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDIN 659
Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
EV D+D+EEKE+TLFRHSEKLAIAFGLI ISPP PIRIMKNLRICNDCHTAAK IS+AF
Sbjct: 660 EVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAF 719
Query: 773 DREIVVRDR 781
R+IV R
Sbjct: 720 CRKIVFLFR 728
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/687 (72%), Positives = 579/687 (84%)
Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
RAYIQ N P A LYK ML+N +G DNYTYPLL QA ++R S +E K +H+HVLK GFD
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245
Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
SDVYV NTLIN ++VC +++ A ++F+ES VLD VSWNSILAGY+ NVEEAK IY++M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305
Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
PER+IIASNSMIVLFG +G V EAC+LF EM +KD+V+WSALI+C++QNEMYEEA+ F+
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365
Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
M VMVDEVV VS LSACANL VV G +H+L++KIG E YINLQNALI+MYS CG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425
Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
+I A KLFD + LDLISWNSMISGYLKC V+ A+A+FD+M EKDVVSWS+MISGYAQ
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485
Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
+D F ETL+LF EMQ G +PDE TLVSVISAC L AL+QGKW+HAYI++NGL IN IL
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 545
Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
GTTLIDMYMK GCV+ ALEVF+G EKG+S+WNALI+G AMNGL + SL+MFS MKK V
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 605
Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
TPNEITF+GVLGACRHMGLVDEG HF SMI +H+++PN KHYGCMVDLLGRAG L+EAE
Sbjct: 606 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 665
Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
EL+ MPM+PDVATWGALLGACKKHGD EMG RVGRKL+ELQPDHDGFHVLLSNI+ASKG
Sbjct: 666 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKG 725
Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
+WDDVLE+RGMM + V+KIPGCSMIEANG+IHEFLAGD+THP ++ I++ML EMA KLK
Sbjct: 726 KWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 785
Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
LEGY PD EV D+D+EEKE+TLFRHSEKLAIAFGLI ISPP PIRIMKNLRICNDCHT
Sbjct: 786 LEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHT 845
Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHG 790
AAK IS+AF R+IVVRDRHRFHHF+ G
Sbjct: 846 AAKLISKAFCRKIVVRDRHRFHHFEQG 872
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/630 (58%), Positives = 463/630 (73%), Gaps = 14/630 (2%)
Query: 183 SAARKLFDESPVLDLVSWNSILAGYV-NADNVEEAKFIYNKMPERNIIASN---SMIVLF 238
SA + F+ P SIL ++ N N+++ I ++M I+ S ++ F
Sbjct: 11 SALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKF 70
Query: 239 GRKG---NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
+ + ++F + + W+ ++ Y Q+ E+AL+L+ M+ + V D
Sbjct: 71 STDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNY 130
Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
V+ ACA + G +H +K+G + + +QN LI+MY+ CG + A KLFD
Sbjct: 131 TYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDES 190
Query: 356 HNLDLISWNSMISGYLK---CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
LD +SWNS+++GY+K G V +A LF+ M EKD+VSWS +ISGY Q+ + E L
Sbjct: 191 PVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALV 250
Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI---- 468
+F+EM +G+R DE +VSV+SAC HL + GK IH + + G++ L LI
Sbjct: 251 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 310
Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
DMYMK GCV+NALEVF+G EEKGVSSWNALIIG A+NGL ++SL+MFSEMK +GV PNEI
Sbjct: 311 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 370
Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
TF+GVLGACRHMGLVDEG HF SMI++H +EPN KHYGCMVDLLGRAG+L EAE+LIES
Sbjct: 371 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 430
Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
MPM+PDVATWGALLGACKKHGD EMGERVGRKL+ELQPDHDGFHVLLSNI ASKG W+DV
Sbjct: 431 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDV 490
Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
LEVRGMM ++GVVK PGCS+IEANG++HEFLAGD+THP IN+++ ML+EMAK+LK+EGYA
Sbjct: 491 LEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYA 550
Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
PDT EV+ DID+EEKETTLFRHSEKLAIAFGL+TISPP PIRIMKNLRICNDCHTAAK I
Sbjct: 551 PDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLI 610
Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
S+A+ REIVVRDRHRFH+FK G+CSCMD+W
Sbjct: 611 SKAYAREIVVRDRHRFHYFKEGACSCMDYW 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/648 (52%), Positives = 456/648 (70%), Gaps = 7/648 (1%)
Query: 28 INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLPFIEMSYSF 85
+ +++L+ HL +C S + QI +Q + +GL+AD FAASRLI F ST LLP + +S
Sbjct: 2 LTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLP-LPFHHSL 60
Query: 86 KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
++ + PN F N +++A + +P + LY M + D YT+ +LA A A R
Sbjct: 61 RLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRR 117
Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
++ EG+ +H H ++ GF ++Y+ N L++MY+ CG L ARK+FD PV D VSWN+ILA
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILA 177
Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
YV A++V++A ++ +MPER A +SM+ LFGR+G V EA ++F + +KD+ +W+A+
Sbjct: 178 AYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAM 237
Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
ISC+++N + EAL LF +M VDE V+V V++ACA L V + G H LA + G+
Sbjct: 238 ISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGL 297
Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
+N+QNALIHMYSS + A +LFD+G LD SWNSMI+GYLK GSV+ A+ LF
Sbjct: 298 GSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTV 357
Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
M +KD VSW+TMISG Q+DQ SE L++F MQ GI+PDE TLVSVISACT++ +L+QG
Sbjct: 358 MPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG 417
Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
K +H YIR++ I ILGT+LIDMYMK GC+++ALEVF EE+G WNA+I+G AMN
Sbjct: 418 KSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMN 477
Query: 506 GLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
GL KSL+MFSEM+ S TPNEITF GVL ACRH GLV+EG F M ++ + PN +
Sbjct: 478 GLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIR 537
Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
HYGCMVDLLGRAG +KEAE LIESMPMSPDV WGALLG+C KHGD+E+GERVGRKLV L
Sbjct: 538 HYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL 597
Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
P HDGFH +LSNI+AS+G W V ++RG M + V KIPG S++E++
Sbjct: 598 DPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESS 645
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group] gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group] gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/648 (52%), Positives = 456/648 (70%), Gaps = 7/648 (1%)
Query: 28 INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLPFIEMSYSF 85
+ +++L+ HL +C S + QI +Q + +GL+AD FAASRLI F ST LLP + +S
Sbjct: 2 LTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLP-LPFHHSL 60
Query: 86 KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
++ + PN F N +++A + +P + LY M + D YT+ +LA A A R
Sbjct: 61 RLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRR 117
Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
++ EG+ +H H ++ GF ++Y+ N L++MY+ CG L ARK+FD PV D VSWN+ILA
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILA 177
Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
YV A++V++A ++ +MPER A +SM+ LFGR+G V EA ++F + +KD+ +W+A+
Sbjct: 178 AYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAM 237
Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
ISC+++N + EAL LF +M VDE V+V V++ACA L V + G H LA + G+
Sbjct: 238 ISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGL 297
Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
+N+QNALIHMYSS + A +LFD+G LD SWNSMI+GYLK GSV+ A+ LF
Sbjct: 298 GSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTV 357
Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
M +KD VSW+TMISG Q+DQ SE L++F MQ GI+PDE TLVSVISACT++ +L+QG
Sbjct: 358 MPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG 417
Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
K +H YIR++ I ILGT+LIDMYMK GC+++ALEVF EE+G WNA+I+G AMN
Sbjct: 418 KSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMN 477
Query: 506 GLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
GL KSL+MFSEM+ S TPNEITF GVL ACRH GLV+EG F M ++ + PN +
Sbjct: 478 GLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIR 537
Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
HYGCMVDLLGRAG +KEAE LIESMPMSPDV WGALLG+C KHGD+E+GERVGRKLV L
Sbjct: 538 HYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL 597
Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
P HDGFH +LSNI+AS+G W V ++RG M + V KIPG S++E++
Sbjct: 598 DPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESS 645
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays] gi|223947871|gb|ACN28019.1| unknown [Zea mays] gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/651 (51%), Positives = 457/651 (70%), Gaps = 10/651 (1%)
Query: 28 INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD-----LLPFIEMS 82
+ +SIL+ L +C S + QI +Q + +GL+AD +AASRL+ F+T LLP +
Sbjct: 2 LTVSILDAQLSRCCSARHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPH-PLH 60
Query: 83 YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
+S ++F + SPN F NT+++A +++ P LY M D YT+PLLA A A
Sbjct: 61 HSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLAAACA 117
Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
R V EG +H H +K GF ++Y+ N L++MY+ CG +++AR++FD PV D VSWN+
Sbjct: 118 ARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNT 177
Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
ILA YV +VE+A ++ +MPER+ A ++M+ LF R+G V EA +F +D +W
Sbjct: 178 ILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTW 237
Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
+A++SC+E+N+++ EAL +F +M + VDE V+VSV++ACA V++ G H L V+
Sbjct: 238 TAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVR 297
Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
G+ +N+QN LIHMYSSC ++ A +LFD G +LD SWNSMISGYLK G VE A+AL
Sbjct: 298 AGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKAL 357
Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
FD M +KD VSWS MI+G ++Q SE L++F M+ H I+PD+ TLVSVISAC++L AL
Sbjct: 358 FDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSAL 417
Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
+QGK +H YIRK I +LGT+LIDMYMK GC++ ALEVF EEKG WNA+I+G
Sbjct: 418 EQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGL 477
Query: 503 AMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
AMNGL +SL+MFSEM+ +G PNEITF GVL ACRH GLV+EG + F M ++++ P
Sbjct: 478 AMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVP 537
Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
N +HYGCMVDLLGRAG ++EAE++I+SMPMSPDV WGALLGAC KHGD E+GERVG+KL
Sbjct: 538 NIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKL 597
Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
V+L PDHDGF +LSNI+AS+G W V ++RG M ++ V K+ GCSM+E +
Sbjct: 598 VKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVEPS 648
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor] gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/651 (50%), Positives = 459/651 (70%), Gaps = 11/651 (1%)
Query: 28 INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD-----LLPFIEMS 82
+ +S+L+ L +C+S + +I +Q + +GL+AD +AASRL+ F+T LLP +
Sbjct: 2 LTVSLLDAQLSRCRSARHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLP-QPLH 60
Query: 83 YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
+S ++F + SPN F NT++RA +++ +P LY M D YT+PLLA A A
Sbjct: 61 HSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASM---PAAPDTYTHPLLAAACA 117
Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
R EG+ +H H +K GF ++Y+ N L++MY+ CG ++ AR++FD PV D VSWN+
Sbjct: 118 ARGDAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNT 177
Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
ILA YV +VE+A ++ +MPER+ A +SM+ LF R G V EA +F +D +W
Sbjct: 178 ILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTW 237
Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
+A+ISC+E+N+++ EAL +F +M + VDE V+VSV++ACA V++ G H L V+
Sbjct: 238 TAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVR 297
Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
G+ +N+QNALIHMYSSC ++ A +LFD+ +LD SWNSMISGYLK G VE A+AL
Sbjct: 298 AGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKAL 357
Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
F+ M +KD VSWS MI+G Q++Q SE L++F M+ H I+PDE TLVSVISACT+L AL
Sbjct: 358 FNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCAL 417
Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
+QGK +H YIR+ I +LGT+LIDMYMK GC++ ALEVF EEKG WNA+I+G
Sbjct: 418 EQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGL 477
Query: 503 AMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
AMNGL +SL+MFSEM+ SG+ P+EITF GVL ACRH GLV+EG + F M ++++ P
Sbjct: 478 AMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIP 537
Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
N +HYGCMVDLLGRAG ++EAE+LI+SMPMSPDV WGALLGAC KH D E+GERVG+KL
Sbjct: 538 NIRHYGCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKL 597
Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
V+L P HDGF +LSNI+AS+G W V ++RG M ++ V K+ GCS++E++
Sbjct: 598 VKLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSM-KQHVAKVAGCSVVESS 647
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LUJ2 | PP249_ARATH | No assigned EC number | 0.3705 | 0.9849 | 0.9334 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01310097 | hypothetical protein (793 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 798 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-154 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-30 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 552 bits (1424), Expect = 0.0
Identities = 273/761 (35%), Positives = 415/761 (54%), Gaps = 73/761 (9%)
Query: 75 LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
+ F E+ +++ +F + + F +N ++ Y + +A+CLY ML V D YT+
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
P + + + G+ +H HV++ GF+ DV V N LI MY CGD+ +AR +FD P
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPER---------------------------- 226
D +SWN++++GY E ++ M E
Sbjct: 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
Query: 227 -----------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
++ NS+I ++ G+ EA ++F M KD VSW+A+IS YE+N +
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370
Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
++AL + M V DE+ + SVLSACA L + G +H LA + G+ Y+ + NAL
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
I MYS KC ++KA +F + EKDV+SW+
Sbjct: 431 IEMYS-------------------------------KCKCIDKALEVFHNIPEKDVISWT 459
Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
++I+G +++ E L F +M ++P+ TL++ +SAC + AL GK IHA++ +
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
G+ + L L+D+Y++ G ++ A F+ + EK V SWN L+ G+ +G ++E+F
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
+ M +SGV P+E+TF+ +L AC G+V +G +F+SM +++ + PN KHY C+VDLLGR
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
AG L EA I MP++PD A WGALL AC+ H E+GE + + EL P+ G+++LL
Sbjct: 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
N++A G+WD+V VR M G+ PGCS +E G +H FL D +HPQI EI+ +L
Sbjct: 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757
Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
+ +K+K G A + D + K+ HSE+LAIAFGLI P PI + KNL
Sbjct: 758 EGFYEKMKASGLAGSESS-SMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNL 816
Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
+C +CH KFIS+ REI VRD +FHHFK G CSC D
Sbjct: 817 YMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 466 bits (1200), Expect = e-154
Identities = 236/670 (35%), Positives = 335/670 (50%), Gaps = 93/670 (13%)
Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
+ TY L +A S+ K ++ HV +GF+ D Y+ N ++ M+ CG L AR+L
Sbjct: 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEAC 248
FDE P +L SW +I+ G V+A GN EA
Sbjct: 181 FDEMPERNLASWGTIIGGLVDA-------------------------------GNYREAF 209
Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
LF+EM W + V +L A A L
Sbjct: 210 ALFREM-------WEDGSDAEPR------------------------TFVVMLRASAGLG 238
Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
+AG +H +K G+ + ALI MYS
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYS---------------------------- 270
Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
KCG +E AR +FD M EK V+W++M++GYA H E L L+ EM+ G+ D+ T
Sbjct: 271 ---KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
+I + L L+ K HA + + G ++ + T L+D+Y K G +++A VF
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
K + SWNALI G+ +G K++EMF M GV PN +TF+ VL ACR+ GL ++G
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
F SM + HR++P + HY CM++LLGR G+L EA +I P P V W ALL AC+ H
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
+ E+G KL + P+ +V+L N++ S GR + +V + R+G+ P C+
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
IE H F +GDR HPQ EI LDE+ K++ GY + E+ D+D++E++ +
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627
Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
HSEKLAIAFGLI S P++I ++ RIC DCH KFI+ REIVVRD RFHHFK
Sbjct: 628 YHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687
Query: 789 HGSCSCMDFW 798
G CSC D+W
Sbjct: 688 LGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 2e-67
Identities = 171/586 (29%), Positives = 256/586 (43%), Gaps = 94/586 (16%)
Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
N+ +RA +QA+ L + M V VD Y L + + +V EG + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
+ V + N +++M+ G+L A +F + P DL SWN ++ GY A +EA +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 220 YNKM------P---------------------------------ERNIIASNSMIVLFGR 240
Y++M P E ++ N++I ++ +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
G+V A +F MP++D +SW+A+IS Y +N E L LF M + V D + + SV
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
+SAC L + G +H VK G +++ N+LI MY S G AEK+F D
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
+SW +MISGY K G +KA L + M+
Sbjct: 355 VSWTAMISGYEKNGLPDKA-------------------------------LETYALMEQD 383
Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
+ PDE T+ SV+SAC L LD G +H + GL ++ LI+MY K C+D A
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
LEVFH EK V SW ++I G +N ++L F +M + + PN +T + L AC +
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
Query: 541 GLVDEGHRHFNSMIQEHRLE---------PNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
G + G I H L PN+ ++DL R G + A S
Sbjct: 503 GALMCGKE-----IHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS--H 550
Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
DV +W LL HG M + ++VE + PD F LL
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 3e-31
Identities = 94/399 (23%), Positives = 159/399 (39%), Gaps = 98/399 (24%)
Query: 47 TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
++ ++ TG D + LI+ L + K+F+ +E+ + + M+ Y
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLG---SWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
+ +P +A+ Y LM +NV D T + A A + G +H+ + G S V
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
V N LI MY+ C +++A +++ +PE
Sbjct: 425 VVANALIEMYSKC-------------------------------KCIDKALEVFHNIPE- 452
Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
KD++SW+++I+ N EAL+ F M+
Sbjct: 453 ------------------------------KDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
+ + V +++ LSACA + + G +HA ++ GI L NAL+ +Y CG +
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
A WN S EKDVVSW+ +++GY H +
Sbjct: 542 YA--------------WNQFNSH------------------EKDVVSWNILLTGYVAHGK 569
Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
S + LF M G+ PDE T +S++ AC+ + QG
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 41/258 (15%)
Query: 89 AFLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
F E P N + T++ + ++A L++ M + + T+ ++ +ASA S
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
G+ +H VLK G D +V+ LI+MY+ CGD+ AR +FD P V+WNS+LAG
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 207 YVNADNVEEAKFIYNKMPER---------------------------------------N 227
Y EEA +Y +M + +
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
I+A+ +++ L+ + G + +A +F MP+K+L+SW+ALI+ Y + +A+ +F MI
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 288 HRVMVDEVVVVSVLSACA 305
V + V ++VLSAC
Sbjct: 420 EGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 6e-25
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 23/132 (17%)
Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE- 722
PGC E + L+GD +HP +E+ +++K+EG P+T E+ D+D EE
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 723 -----KETTLFRHSEKLAIAFGLITISPPNPIRIMKNL-RICNDCHTAAKFISRAFDREI 776
K L H+EK A+A+GL+T RI+K L R+C DCH ++I++ REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 777 VVRDRHRFHHFK 788
+VRD RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 2e-17
Identities = 92/420 (21%), Positives = 183/420 (43%), Gaps = 40/420 (9%)
Query: 221 NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW------SALISCYEQNEM 274
K PE I A N ++ R G + + L ++M K+ L+ +C +Q +
Sbjct: 368 RKSPEY-IDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV 422
Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
+EA F +I + + +++SV CA+ + V L + G++ L
Sbjct: 423 -KEA-FRFAKLIRNPTLSTFNMLMSV---CASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 335 LIHMYSSCGEITTAEKLFDAGHNLD-------LISWNSMISGYLKCGSVEKARALFDAMI 387
LI S+C + + +F+ H + + ++ ++I G + G V KA + M
Sbjct: 478 LI---STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 388 EKDV----VSWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVA 441
K+V V ++ +IS Q + EM + H I PD T+ +++ AC +
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS----WNA 497
+D+ K ++ I + +K + T ++ + G D AL ++ ++KGV ++A
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
L+ G DK+ E+ + +K G+ +++ ++GAC + + + I+
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSI 713
Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALLGACKKHGDHEMG 614
+L P ++ L L +A E++ M + P+ T+ LL A ++ D ++G
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-16
Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 43/211 (20%)
Query: 99 FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHV 157
+N+M+ Y ++A+CLY M ++ V +D +T+ ++ + + RL++ E K H +
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS-RLALLEHAKQAHAGL 351
Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-------- 209
++ GF D+ N L+++Y+ G + AR +FD P +L+SWN+++AGY N
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 210 -----------ADN----------------VEEAKFIYNKMPERNIIASNSM-----IVL 237
A N E+ I+ M E + I +M I L
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 238 FGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
GR+G + EA + + P K V+ W+AL++
Sbjct: 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 6e-16
Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 15/272 (5%)
Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
++ + H Q + L L MQ + DE V++ C A+++G + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
+ + LG ++ M+++ G + +A VF E+ + SWN L+ G+A G D++L +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVD-----EGHRHFNSMIQEHRLEPNSKHYGCM 569
+ M +GV P+ TF VL C G+ D E H H + E + +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCG--GIPDLARGREVHAH----VVRFGFELDVDVVNAL 228
Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
+ + + G + A + + MP D +W A++ ++G+ G + + EL D D
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 630 GFHVLLSNIHASKGRWDDVL--EVRGMMVRRG 659
+ S I A + D+ L E+ G +V+ G
Sbjct: 288 -LMTITSVISACELLGDERLGREMHGYVVKTG 318
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 21/257 (8%)
Query: 333 NALIHMYSSCGEITTAEKLFDAGHNL---------DLISWNSMISGYLKCGSVEKARALF 383
NALI S+CG+ ++ FD + D I+ +++ G V++A+ ++
Sbjct: 546 NALI---SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 384 DAMIEKDVVS----WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
+ E ++ ++ ++ +Q + LS++ +M+ G++PDE +++ H
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG----VSSW 495
LD+ I RK G+K+ ++ ++L+ ALE++ + VS+
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
NALI K+LE+ SEMK+ G+ PN IT+ +L A D G S +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAK 781
Query: 556 EHRLEPNSKHYGCMVDL 572
E ++PN C+ L
Sbjct: 782 EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-11
Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 40/245 (16%)
Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
P +T ++S C +D + +++ GLK + L TTLI K G VD EV
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 484 FHGTE----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
FH E V ++ ALI G A G K+ + M+ V P+ + F ++ AC
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
G VD R F D+L AE E+ P+ PD T G
Sbjct: 555 SGAVD---RAF--------------------DVL--------AEMKAETHPIDPDHITVG 583
Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHASKGRWDDVLEVRGMMV 656
AL+ AC G + + V + + E + G + + N + KG WD L + M
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 657 RRGVV 661
++GV
Sbjct: 642 KKGVK 646
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 6e-10
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
DVV+++T+I GY + + E L LF EM+ GI+P+ T +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSWSTMISGYAQ 403
D++++N++I GY K G VE+A LF+ M ++ +V ++S +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-08
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
V ++N LI G+ G +++L++F+EMKK G+ PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 55/266 (20%), Positives = 117/266 (43%), Gaps = 16/266 (6%)
Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
G++ R + +A ++ D ++T+IS A+ + +F EM + G+ + T ++I
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 434 SACTHLVALDQGKWIHAY--IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH--GTEE 489
C A K AY +R +K + ++ LI + G VD A +V E
Sbjct: 515 DGCAR--AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 490 KGVS----SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
+ + AL+ A G D++ E++ + + + + + +C G D
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALL 602
++ M ++ ++P+ + +VD+ G AG L +A E+++ + ++ +L+
Sbjct: 633 ALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 603 GACKKHGDHEMGERV--GRKLVELQP 626
GAC + + + K ++L+P
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRP 717
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
+++NS+ISGY K G +E+A LF M EK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
++N+LI G+ G +++LE+F EMK+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
V+++T+I G + + E L LF EM+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISCY 269
+++ N++I + +KG V EA +LF EM K+ ++ ++S LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
V+++++ISGY + + E L LF EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
+++N++I G K G VE+A LF M E+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
++N LI G G +++LE+F EMK+ G+ P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
P+ +NT++ Y ++ ++A+ L+ M + + YTY
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
D+V++N+++ GY VEEA ++N+M +R I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI 34
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
D+V+++ LI Y + EEAL LF M + + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 5e-04
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
G D++++N++I G + G V++A L D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALLGACKK 607
P+ Y ++D + G ++EA +L M + P+V T+ L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
V++NS+++GY A +EEA ++ +M E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
V++++LIS Y + EEAL LF M + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.22 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.2 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.02 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.85 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.59 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.16 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.02 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.99 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.89 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.84 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.8 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.75 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.67 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.53 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.52 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.52 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.21 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.17 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.07 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.43 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.33 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.2 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.17 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.7 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.44 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.4 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.15 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.12 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.75 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.43 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.18 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.33 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.96 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.78 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.29 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.82 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.61 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.28 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.14 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.56 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.28 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.92 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.67 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.44 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.56 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.03 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.93 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.62 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 83.49 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.28 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.1 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.07 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.99 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.63 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.52 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.73 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 80.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.29 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-136 Score=1204.64 Aligned_cols=761 Identities=33% Similarity=0.585 Sum_probs=739.7
Q ss_pred CCCChHHHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHH
Q 003746 26 PTINLSILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102 (798)
Q Consensus 26 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~l 102 (798)
.+|+..++..+++.|.. +..+.++|..+++.|..+++.++|+|+. +|+ ++|++++|+++|++|++||+++||++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~--~~~-~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS--MFV-RFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--HHH-hCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 45677788888888865 7889999999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (798)
|.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..++++|..+.+.|+.||+.++|+||.+|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--
Q 003746 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPK-- 256 (798)
Q Consensus 183 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 256 (798)
++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.. ||..+|+.++.++++.|+++.|.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999964 7899999999999999999999999998864
Q ss_pred --CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHH
Q 003746 257 --KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334 (798)
Q Consensus 257 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 334 (798)
||..+||+||.+|++.|++++|.++|++|. .||..+|++++.+|.+.|+.++|.+++..|.+.|+.||..+++.
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 699999999999999999999999999996 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Q 003746 335 LIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410 (798)
Q Consensus 335 li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 410 (798)
++.+|++.|++++|.++++. +..++..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC
Q 003746 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490 (798)
Q Consensus 411 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 490 (798)
+.+|++|.. +++||.+||+.+|.+|++.|+++.++++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987899999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++.+|+.|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHHHhHHhhH
Q 003746 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730 (798)
Q Consensus 651 ~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~h 730 (798)
+++.|+++|++|+||+|||++++++|.|.+||++||+.++|+.+|+++..+|++.||.||+...+ ++++++|+..+++|
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~h 791 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGH 791 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998877 55788899999999
Q ss_pred HHHHHHHHhhccCCCCCcEEEEcccccCcchhhHHHHHhhhcCceEEEecCCcccccCCcccCCCC
Q 003746 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796 (798)
Q Consensus 731 ~~~~a~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 796 (798)
|||||+|||||++|+|+||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 792 se~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 792 SERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred cHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-120 Score=1043.10 Aligned_cols=613 Identities=38% Similarity=0.654 Sum_probs=597.7
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003746 93 SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171 (798)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (798)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHH
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f 251 (798)
|+++|+++|++++|.++|++|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~---------------------------------------------------------- 185 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP---------------------------------------------------------- 185 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----------------------------------------------------------
Confidence 9999999998888888888877
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..+.++.++++|..+.+.|+.+|..+
T Consensus 186 ----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 186 ----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 5677788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
+|+|+++|+ ++|++++|.++|++|+++|+++||+||.+|++.|++++|+
T Consensus 262 ~n~Li~~y~-------------------------------k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 262 SCALIDMYS-------------------------------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHHHHH-------------------------------HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Confidence 999999999 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 491 (798)
++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 390 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
+|++.|++++|.+++++|+.+|+..+|++|+.+|+.+|+.+.|..+++++++++|++...|..|+++|++.|+|++|.++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHHHhHHhhHH
Q 003746 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731 (798)
Q Consensus 652 ~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~h~ 731 (798)
++.|+++|++|.||+|||++++++|.|.+||.+||+.++|+.+|+++..+|++.||.||+..+++|+++++++..+++||
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hs 630 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS 630 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCcEEEEcccccCcchhhHHHHHhhhcCceEEEecCCcccccCCcccCCCCCC
Q 003746 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798 (798)
Q Consensus 732 ~~~a~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~w 798 (798)
||||+||||+++|+|.||||+||||||+|||+|+||||+++||+|||||.+|||||++|+|||+|||
T Consensus 631 ekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 631 EKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-78 Score=711.45 Aligned_cols=671 Identities=24% Similarity=0.328 Sum_probs=540.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003746 93 SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172 (798)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (798)
.++..++|.++.+|++.|++++|+.+|++|.+.|++|+..+|..++++|.+.+.+..|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCC----CCCchHHHHHHHHHhhcCCHHHHH
Q 003746 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEAC 248 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~y~~~g~~~~A~ 248 (798)
+.+|+++|+++.|.++|++|+.||+++||++|.+|++.|++++|+++|++|. .+|..+|+.++..+++.++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 8888888888888888888888888888888888888888888888888885 356777777777777777777776
Q ss_pred HHHhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 003746 249 RLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324 (798)
Q Consensus 249 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 324 (798)
+++..|. .+|+.+||+||.+|++.|++++|.++|++|.. ||.++|++++.+|++.|+.++|..++..|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666654 25666777777777777777777777777643 566677777777777777777777777777777
Q ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003746 325 IECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400 (798)
Q Consensus 325 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 400 (798)
+.||..+|+.++.++++.|+++.|.+++.. +..||..+||+||.+|+++|++++|.++|++|..+|+++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 777777777777777777777777666643 5666777777777777799999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 481 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||.+||+.++.+|++.|+++++.+++..+.+ .|+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCC
Confidence 9999999999999999999999999999999999999986 5999999999999999999999999999999976 5999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCcchHHHHHHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNI 638 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~ 638 (798)
|+..++++|+++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|.++|++|.+ ..|+.. +|..+..+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHH
Confidence 99999999999999999999999999999 79999999999999999999999999999986 567764 57777789
Q ss_pred HHhcCChhHHHHHHHHHH-hCCCccCCccceEEECCEEEEEEeCCCCCcChHHHH---HHHHHHHHHHHHcCCCCCCccc
Q 003746 639 HASKGRWDDVLEVRGMMV-RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID---NMLDEMAKKLKLEGYAPDTLEV 714 (798)
Q Consensus 639 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~g~~~d~~~~ 714 (798)
|.+.|++++|.++|+.|. +.|+.+.... ....-+++ +.++++.+.+++++..||...|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 999999999999999998 6677643210 00111122 2456777777788899999988
Q ss_pred ccccChHHHHhHHhhHHHHHH-HHHhhccCCCCCcEEEEcc-cccCcchhhHHHHHhhhcCc--------eEEEecCCcc
Q 003746 715 AFDIDQEEKETTLFRHSEKLA-IAFGLITISPPNPIRIMKN-LRICNDCHTAAKFISRAFDR--------EIVVRDRHRF 784 (798)
Q Consensus 715 ~~~~~~~~~~~~~~~h~~~~a-~~~~~~~~~~~~~~~~~~n-l~~~~~~~~~~~~~s~~~~~--------~~~~~~~~~~ 784 (798)
..-+..+...+.+ .-.|+.+ ..+.+.+...+ ....+-| ....|+-.++.+.-..|..+ ..|.- .+..
T Consensus 661 ~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~-~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~ 737 (857)
T PLN03077 661 GALLNACRIHRHV-ELGELAAQHIFELDPNSVG-YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKV 737 (857)
T ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEE
Confidence 5444444322211 0111111 11222222222 2122333 34567788888887776655 22222 3567
Q ss_pred cccCCcccC
Q 003746 785 HHFKHGSCS 793 (798)
Q Consensus 785 h~~~~g~cs 793 (798)
|-|..|.-|
T Consensus 738 ~~f~~~d~~ 746 (857)
T PLN03077 738 HAFLTDDES 746 (857)
T ss_pred EEEecCCCC
Confidence 888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=595.94 Aligned_cols=517 Identities=17% Similarity=0.224 Sum_probs=467.4
Q ss_pred CCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003746 58 LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-----FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132 (798)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 132 (798)
..++...+..++. .++ +.|++++|.++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..
T Consensus 366 ~~~~~~~~~~~y~--~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 366 GKRKSPEYIDAYN--RLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CCCCchHHHHHHH--HHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 3456777888888 888 8999999999999998876654 45667789999999999999999974 9999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP----VLDLVSWNSILAGYV 208 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~ 208 (798)
||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 689999999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCC------CCCcccHHHHHHHHHhcCChhHH
Q 003746 209 NADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP------KKDLVSWSALISCYEQNEMYEEA 278 (798)
Q Consensus 209 ~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A 278 (798)
+.|++++|+++|++|.. +|..+|+.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999964 688999999999999999999999999994 47999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----
Q 003746 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---- 354 (798)
Q Consensus 279 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---- 354 (798)
.++|++|.+.|+.|+..+|++++.+|++.|+++.|..++..|.+.|+.||..+|+.++++|++.|++++|.++|+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003746 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430 (798)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 430 (798)
+..||..+|++||.+|++.|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 678999999999999999999999999999994 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH----HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 003746 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY----MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506 (798)
Q Consensus 431 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 506 (798)
.++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..++...|+.+...+...|+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~---------- 828 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT---------- 828 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH----------
Confidence 99999999999999999999999999999999999999874 3444444444445443333444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003746 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 507 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++|+.+|++|.+.|+.||.+||+.++.++...+..+.+..+++.|.. .+..|+..+|++|++++++. .++|..++
T Consensus 829 --~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 829 --SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 56999999999999999999999999877788888888888877743 35667788999999988543 46899999
Q ss_pred HhC---CCCCCHH
Q 003746 587 ESM---PMSPDVA 596 (798)
Q Consensus 587 ~~~---~~~p~~~ 596 (798)
++| ++.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 998 6667654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=573.37 Aligned_cols=542 Identities=18% Similarity=0.222 Sum_probs=390.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcch-----HHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHH
Q 003746 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS-----WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238 (798)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y 238 (798)
++...|..++..|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+++|+.|..+|..+|+.|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555433322 233344455555555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHH
Q 003746 239 GRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314 (798)
Q Consensus 239 ~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (798)
++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 55555555555555554 24566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG------HNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 315 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
+++..|.+.|+.||..+||.||.+|++.|++++|.++|+++ ..||..+|++||.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666543 356666777777777788888888888888864
Q ss_pred ----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHH
Q 003746 389 ----KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464 (798)
Q Consensus 389 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (798)
++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTE----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
++||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999885 5788899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---CCCCC
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG----RAG-------------------MLKEAEELIESM---PMSPD 594 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~ 594 (798)
|++++|.++|++|.+ .|+.||..+|++|++++. +++ ..++|..+|++| ++.||
T Consensus 768 G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999965 589999999999987643 222 346799999999 78899
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCccCCccceEEEC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKGRW-DDVLEVRGMMVRRGVVKIPGCSMIEAN 672 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~s~i~~~ 672 (798)
..+|+.++.++.+.+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.+.........-
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~ 923 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSFKKSPIV 923 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcccccCceE
Confidence 99999999887888888888888877642 2344556777777765 443 689999999999999765432111222
Q ss_pred CEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcc
Q 003746 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713 (798)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~ 713 (798)
-+++.|..|.. -.-+..+|..+.+.....--.|.-..
T Consensus 924 ~d~~~~~~~aa----~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 924 IDAEELPVFAA----EVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred EEcccCcchhH----HHHHHHHHHHHHHHHhccCcCCccee
Confidence 23344443321 12233556666666543224455444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=573.83 Aligned_cols=462 Identities=19% Similarity=0.321 Sum_probs=423.3
Q ss_pred CCCchhhhhhccccccCccCCCChhHHHHhhhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003746 58 LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES-----PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132 (798)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 132 (798)
...+...+++++. .|. +.|++++|..+|+.|.. ||..+|+.++.++.+.++++.|.+++..|.+.|+.||..
T Consensus 83 ~~~~~~~~~~~i~--~l~-~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIE--KLV-ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHH--HHH-cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4456678999999 999 99999999999999853 788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP----VLDLVSWNSILAGYV 208 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~ 208 (798)
+|+.++.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|. .||..+|+.++.+++
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999999999999995 5899999999999999999999999999985 678899999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 003746 209 NADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284 (798)
Q Consensus 209 ~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 284 (798)
+.|..+.+.+++..+.+ +|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999887754 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHH
Q 003746 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364 (798)
Q Consensus 285 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (798)
|.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~------------------------ 371 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS------------------------ 371 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++
T Consensus 372 -------k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 372 -------KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred -------HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 445 GKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 445 a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ .++..+|++|+.+|..+|+.+.|..+++++.+
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9999999986 5999999999999999999999999999998886 45677777777777777777777777777754
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 523 VTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 523 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
+.|+ ..+|..++..|++.|++++|.++++.|.+ .|+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~ 560 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLS 560 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCc
Confidence 4454 34677777777777777777777777754 3553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=336.92 Aligned_cols=606 Identities=12% Similarity=0.035 Sum_probs=429.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC--CC-cchHHHHHHHHHcCCCchHHH
Q 003746 40 CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES--PN-GFIFNTMMRAYIQRNVPQQAI 116 (798)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 116 (798)
......+...+..+.+.........+ .... .+. ..|++++|...|+...+ |+ ...+..+...+...|++++|.
T Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKAPNSPLAHY-LKAL--VDF-QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHH-HHHH--HHH-HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Confidence 34477777777777765433222221 1122 333 57888888888877643 22 234445556677788888888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--
Q 003746 117 CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-- 194 (798)
Q Consensus 117 ~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 194 (798)
..|+++.... +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++..
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 393 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888877653 3344556666777778888888888888887765 55677778888888888888888888876552
Q ss_pred -CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHH
Q 003746 195 -LDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALIS 267 (798)
Q Consensus 195 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 267 (798)
.+...|..+...+...|++++|++.|+++... +......++..|.+.|++++|.++++++.. .+..+|+.+..
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 473 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34456777777788888888888888777643 234556677778888888888888877653 35567788888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHH
Q 003746 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347 (798)
Q Consensus 268 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 347 (798)
.+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|...+..+.+.. +.+..++..+...|.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877632 1223445556666777788888888888777654 4456677777888888888888
Q ss_pred HHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 348 AEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 348 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
|...|++. .+.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++....
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88887763 334455677777788888888888888877743 356678888888888888888888888777643
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 003746 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNAL 498 (798)
Q Consensus 422 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 498 (798)
+.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+. +...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 2345566667777777888888888887777653 335667777777888888888888888777643 34567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 77777888888888888887774 455566667777777788888888887777653 23356677777777888888
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.++|.+.|+++ . .+++..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887776 2 23456677777777777777 667777777777777777777777777777788888887777777
Q ss_pred hCCC
Q 003746 657 RRGV 660 (798)
Q Consensus 657 ~~~~ 660 (798)
+.+.
T Consensus 865 ~~~~ 868 (899)
T TIGR02917 865 NIAP 868 (899)
T ss_pred hhCC
Confidence 6554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=334.00 Aligned_cols=603 Identities=13% Similarity=0.034 Sum_probs=496.2
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHH
Q 003746 41 QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAIC 117 (798)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (798)
.....+...+...++... .++.++..+.. .+. ..|++++|...|+.+.+ .+...+......+.+.|++++|+.
T Consensus 207 g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~--~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 282 (899)
T TIGR02917 207 GNIELALAAYRKAIALRP-NNPAVLLALAT--ILI-EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE 282 (899)
T ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHH--HHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 447888888888776643 35566677777 777 88999999999988743 233344444555678899999999
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---
Q 003746 118 LYKLMLNNNVGVD-NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP--- 193 (798)
Q Consensus 118 ~~~~m~~~g~~~~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--- 193 (798)
.|+++.+.+ |+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...+.+.|++++|...++.+.
T Consensus 283 ~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 359 (899)
T TIGR02917 283 TLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD 359 (899)
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988754 33 2234445556778899999999999998876 5667788889999999999999999998765
Q ss_pred CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCC---CcccHHHHHH
Q 003746 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALIS 267 (798)
Q Consensus 194 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 267 (798)
..+...|+.+...+.+.|++++|.++|+++.+. +...+..+...|...|++++|.+.|+.+.+. +...+..++.
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 335567888899999999999999999987653 4567788888999999999999999887642 3456777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHH
Q 003746 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347 (798)
Q Consensus 268 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 347 (798)
.+.+.|++++|+++++++... .+++..++..+...+...|+.+.|...+..+.+.. +.+...+..+...|.+.|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 34466788888888999999999999999988764 4456677888999999999999
Q ss_pred HHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 348 AEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 348 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
|.+.|++. .+.+..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++....
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999873 345677888999999999999999999998843 356678889999999999999999999998653
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 003746 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNAL 498 (798)
Q Consensus 422 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 498 (798)
+.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+. +..+|..+
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5567788889999999999999999999998765 345677888999999999999999999887643 46789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
+..+...|++++|.++++.+.+.+ .++...+..+...+...|++++|.+.|+++.+ ..|+...+..++..|.+.|+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCC
Confidence 999999999999999999998864 44556777888889999999999999999876 45666788889999999999
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+++|.+.++++ ..+.+..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ ++|.++++++.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 99999999887 2334678889999999999999999999999999999999999999999999999 88999999887
Q ss_pred hCC
Q 003746 657 RRG 659 (798)
Q Consensus 657 ~~~ 659 (798)
+..
T Consensus 831 ~~~ 833 (899)
T TIGR02917 831 KLA 833 (899)
T ss_pred hhC
Confidence 653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=222.54 Aligned_cols=106 Identities=64% Similarity=1.088 Sum_probs=96.7
Q ss_pred ccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHH--------HhHHhhHHHHHHH
Q 003746 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK--------ETTLFRHSEKLAI 736 (798)
Q Consensus 665 ~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 736 (798)
||||+++ |.|.+||.+||+. ++..++...||.|++....++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899988 9999999999988 455667788999999999888877655 5688999999999
Q ss_pred HHhhccCCCCCcEEEEccc-ccCcchhhHHHHHhhhcCceEEEecCCcccccC
Q 003746 737 AFGLITISPPNPIRIMKNL-RICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788 (798)
Q Consensus 737 ~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 788 (798)
||||+++ +|+||+ |||+|||+|+|+||+++||+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-24 Score=257.04 Aligned_cols=599 Identities=11% Similarity=0.038 Sum_probs=443.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC--CCcc-hH----------------HHHH
Q 003746 43 FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES--PNGF-IF----------------NTMM 103 (798)
Q Consensus 43 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~--~~~~-~~----------------~~li 103 (798)
.+.+++....+...-. .++.++..+.. .+. ..|+.++|.+.+++..+ |+.. .+ -.+.
T Consensus 44 ~d~a~~~l~kl~~~~p-~~p~~~~~~~~--~~l-~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 44 EDLVRQSLYRLELIDP-NNPDVIAARFR--LLL-RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hHHHHHHHHHHHccCC-CCHHHHHHHHH--HHH-hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 6777777776655432 25666667777 677 89999999999998755 4332 22 2334
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 003746 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYT-YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182 (798)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (798)
..+.+.|++++|+..|+++.... +|+... ...........++.++|...++.+++.. +.+...+..+..++...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998653 333321 1111222334689999999999999986 66788899999999999999
Q ss_pred HHHHHHHccCCCCCc------chHHH-----------------HHHHHHhCCCHHHHHHHHhhCCC--CCch-HHHHHHH
Q 003746 183 SAARKLFDESPVLDL------VSWNS-----------------ILAGYVNADNVEEAKFIYNKMPE--RNII-ASNSMIV 236 (798)
Q Consensus 183 ~~A~~~f~~~~~~d~------~~~~~-----------------li~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~ 236 (798)
++|+..|+++..... ..|.. .+..+-.....+.|...+.++.. .++. ....+..
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998753211 11111 11111112223445555544322 1221 2234466
Q ss_pred HHhhcCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHH------------HH
Q 003746 237 LFGRKGNVAEACRLFKEMPK--K-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVV------------SV 300 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~l 300 (798)
.+...|++++|+..|++..+ | |...+..|...|.+.|++++|+..|++..+....... ..+. ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 78889999999999998754 3 6778999999999999999999999998875422211 1111 11
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVE 377 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 377 (798)
-..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|++.|++.. +.+...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 234567899999999999999874 4456778889999999999999999999843 344556777777774 56789
Q ss_pred HHHHHHHhcCCCC------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccchhH
Q 003746 378 KARALFDAMIEKD------------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 378 ~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~ 444 (798)
+|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999998876432 223556677888999999999999999875 45 45566778888999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC----c---------chHHHHHHHHHHcCChHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG----V---------SSWNALIIGFAMNGLADKS 511 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A 511 (798)
|...++.+++... .+...+..+...+.+.|+.++|...++.++... . ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999987643 344444555566788999999999999886432 1 1123456778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+++++. .+++...+..+...+.+.|+.++|+..|+++++ ..| +...+..++.+|...|++++|++.++..
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999872 234445677788899999999999999999986 356 4788899999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh-CCC
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG------FHVLLSNIHASKGRWDDVLEVRGMMVR-RGV 660 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~ 660 (798)
...| +..++..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|.+.++.... .|+
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3444 4667888899999999999999999999998776543 555678999999999999999988753 344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-23 Score=249.85 Aligned_cols=570 Identities=11% Similarity=0.024 Sum_probs=425.0
Q ss_pred CCCChhHHHHhhhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH-----------------HH
Q 003746 77 PFIEMSYSFKIFAFLE---SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-----------------PL 136 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~-----------------~~ 136 (798)
..++.+.|++.++++. +.|...+..++..+.+.|+.++|...+++..+.. |+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHH
Confidence 6788899988888753 3567788999999999999999999999998764 444332 22
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCC
Q 003746 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN-TLINMYAVCGDLSAARKLFDESPV---LDLVSWNSILAGYVNADN 212 (798)
Q Consensus 137 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~ 212 (798)
..+.+...|++++|.+.++.+++.. +++..... .+.......|+.++|++.|+++.. .+...+..+...+.+.|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3345788899999999999998765 44432211 122223345999999999998773 245578888899999999
Q ss_pred HHHHHHHHhhCCCCCch-----------------------HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcc-cHHHHH
Q 003746 213 VEEAKFIYNKMPERNII-----------------------ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLV-SWSALI 266 (798)
Q Consensus 213 ~~~A~~~~~~m~~~~~~-----------------------~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li 266 (798)
.++|+..|+++...... .+...+..+-....++.|...+.+... .|.. ......
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 99999999998653211 011112222222334555555554322 1211 112345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc-hhH------------H
Q 003746 267 SCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY-INL------------Q 332 (798)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~------------~ 332 (798)
..+...|++++|+..|++..+. .| +...+..+-.++.+.|+.++|...+..+++...... ... .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 6778899999999999999874 35 456677777888899999999999999987653221 111 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC
Q 003746 333 NALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 333 ~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 406 (798)
..+...+.+.|++++|++.|++. .+.+...+..+...+...|++++|++.|++... .+...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 23355778999999999999873 334566788889999999999999999998863 35667777777775 467
Q ss_pred hHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 407 FSETLSLFMEMQHHGIR--------PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
.++|+.+++.+...... .....+......+...|++++|.+.++.+++... .+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 89999988765432100 0012234455667789999999999999998753 35667788999999999999
Q ss_pred HHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCcHHHH
Q 003746 479 NALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI---------TFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 479 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 546 (798)
+|...|+++.+. +...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999987542 44556666666788999999999998865432222221 233456678899999999
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
..+++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..++..+...|++++|++.++++++.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 998872 2345667788999999999999999999988 4455 5789999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|+++..+..++.++...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-21 Score=226.14 Aligned_cols=563 Identities=12% Similarity=0.046 Sum_probs=314.7
Q ss_pred CCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~ 154 (798)
.|++++|...|+...+ .+...+..+...|.+.|++++|+..+++..+. .|+...|..++... ++...|..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 3555555555554322 23344555555555555555555555555533 23333333322111 4455555555
Q ss_pred HHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHccCCCCC--cchH-HHHHHHHHhCCCHHHHHHHHhhC
Q 003746 155 DHVLKAGFDSDVYVNNTLINM--------YAVCGDLSAARKLFDESPVLD--LVSW-NSILAGYVNADNVEEAKFIYNKM 223 (798)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~d--~~~~-~~li~~~~~~g~~~~A~~~~~~m 223 (798)
+.+++.. +.+..++..+... |.+.++..++++ .+...++ .... -.+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5555544 3334444444443 444444444444 2222222 2222 22245555555555555555555
Q ss_pred CCCC---chHHHHHHHHHhh-cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCchhHH
Q 003746 224 PERN---IIASNSMIVLFGR-KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVV 298 (798)
Q Consensus 224 ~~~~---~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~ 298 (798)
.+.+ ......|...|.. .++ ++|..++....+.|...+..++..|.+.|+.++|.++++++...-.. |+..++.
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 4432 2223334444444 244 55555544333334455555555555555555555555554332111 2222222
Q ss_pred HHHHH------------------------------Hhcc-----------------------------CchHHHHHHHHH
Q 003746 299 SVLSA------------------------------CANL-----------------------------TVVKAGTSVHAL 319 (798)
Q Consensus 299 ~ll~a------------------------------~~~~-----------------------------~~~~~a~~i~~~ 319 (798)
-.+.- +.+. +...++.+....
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 22111 1111 222222223333
Q ss_pred HHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHHhcCC---HHHHHHH--------
Q 003746 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN--L----DLISWNSMISGYLKCGS---VEKARAL-------- 382 (798)
Q Consensus 320 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~-------- 382 (798)
+.+.. +-+....--+.-...+.|+.++|.++|+...+ + +...-+-++..|.+.+. ..++..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 22221 22333333344455567788888888876333 1 22233355666666654 2222222
Q ss_pred -----------------HHhcCC---C--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 003746 383 -----------------FDAMIE---K--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440 (798)
Q Consensus 383 -----------------~~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 440 (798)
+..... . +...|..+..++.. +++++|+..|.+.... .|+......+..++...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 111111 2 45567777777666 7777888877776654 466554444444556778
Q ss_pred chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH---HHHHcCChHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII---GFAMNGLADKSLEMFSE 517 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~ 517 (798)
++++|...++.+... +|+...+..+...+.+.|++++|...|+...+.+...++.... .....|++++|+..|++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888776554 2333344556667778888888888887776554433333322 23344888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 003746 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-D 594 (798)
Q Consensus 518 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 594 (798)
..+ ..|+...+..+..++.+.|+.++|...+++.++ ..|+ ...++.+...+...|++++|++.+++. ...| +
T Consensus 602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 877 456766777777888888888888888888765 4564 667777778888888888888888776 4445 5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..+..++...|++++|+..+++++++.|++..+....+++.....+++.|.+-++......+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 667888888888888888888888888888888888888888888888888888777776655444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-19 Score=206.32 Aligned_cols=541 Identities=10% Similarity=0.001 Sum_probs=356.5
Q ss_pred hHHHHHHHHHc--CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003746 98 IFNTMMRAYIQ--RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175 (798)
Q Consensus 98 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (798)
++..+..+... .|++++|+..|++..+.. +-+..++..+.+++...|+.++|+...+..++.. +.|...+..|...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh
Confidence 44444554333 488888888888887664 3335567777788888888888888888888775 3455555554222
Q ss_pred HHhcCChHHHHHHHccCCC--C-CcchHHHHHHH--------HHhCCCHHHHHHHHhhCCCCC--chHHH-HHHHHHhhc
Q 003746 176 YAVCGDLSAARKLFDESPV--L-DLVSWNSILAG--------YVNADNVEEAKFIYNKMPERN--IIASN-SMIVLFGRK 241 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~-~li~~y~~~ 241 (798)
++.++|..+++++.. | +...+..+... |.+.+...++++ .+...++ ..+.. .+...|.+.
T Consensus 122 ----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 778888888887662 2 23333333333 666666666666 3333332 33333 347788888
Q ss_pred CCHHHHHHHHhcCCCC---CcccHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHH
Q 003746 242 GNVAEACRLFKEMPKK---DLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317 (798)
Q Consensus 242 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 317 (798)
|++++|.+++.++.+. +..-+..|...|.++ ++ +++..+++. .++-|......+...+...|+.+.+..++
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877654 223355566677763 66 666666443 23356666777777788888888888777
Q ss_pred HHHHHhCCc-cchhHHHHH------------------------------HHHHHhCCCHHHHHHHHHhcC----------
Q 003746 318 ALAVKIGIE-CYINLQNAL------------------------------IHMYSSCGEITTAEKLFDAGH---------- 356 (798)
Q Consensus 318 ~~~~~~g~~-~~~~~~~~l------------------------------i~~y~~~g~~~~A~~~~~~~~---------- 356 (798)
..+...-.. |+...+--+ ++.+.+.++++.++++..-.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 775544222 322222111 333444455555554432100
Q ss_pred ----------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----CHHHHHHHHHHHHhCCC--
Q 003746 357 ----------------------NLDLISWNSMISGYLKCGSVEKARALFDAMIE-K-----DVVSWSTMISGYAQHDQ-- 406 (798)
Q Consensus 357 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~-- 406 (798)
+.+....--+---..+.|+.++|.++|+.... + +...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 00111111111123356777777777777644 1 22234466667766655
Q ss_pred -hHHHHHHH------------H----------HHHH-cCCCC---CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC
Q 003746 407 -FSETLSLF------------M----------EMQH-HGIRP---DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459 (798)
Q Consensus 407 -~~~A~~l~------------~----------~m~~-~g~~p---d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 459 (798)
..+++.+- . .... .+..| +...+..+..++.. +..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 33443331 1 1111 11222 33444444444444 77778888777776654 4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 536 (798)
+......+...+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|+..|++..+.+ |+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHH
Confidence 444333445555689999999999997664 334567777888999999999999999998853 5543 33344445
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 614 (798)
....|++++|...+++.++ +.|+...|..+..++.+.|+.++|.+.+++. ...| +...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5567999999999999976 5678888999999999999999999999988 5556 577888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..+++++++.|+++.++..++.+|...|++++|+..+++..+..
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-21 Score=194.13 Aligned_cols=384 Identities=13% Similarity=0.161 Sum_probs=293.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchh-HHHHHHH
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIH 337 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~ 337 (798)
.+|..+...+-..|++++|+.+|+.|++ .+|+. ..|..+..++...|+.+.|.+.+...++. .|+.. +...+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3555555555555555555555555555 23322 24444445555555555555555555443 23222 2334455
Q ss_pred HHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHH
Q 003746 338 MYSSCGEITTAEKLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~ 411 (798)
.....|++++|...+.+....+ .+.|+.|...+...|++..|..-|++...-| ...|-.|...|-..+.+++|+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 5566778888888777643322 3578888888889999999999998886554 457888888999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC
Q 003746 412 SLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490 (798)
Q Consensus 412 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 490 (798)
..|.+... ..|+ .+.+..+...|-..|.++.|+..++..++... .-...|+.|..++-..|++.+|...+.+...-
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99988766 3565 45666666777888999999999999887642 24567889999999999999999999887642
Q ss_pred ---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cch
Q 003746 491 ---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKH 565 (798)
Q Consensus 491 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 565 (798)
-..+.+.|...|...|..++|..+|....+ +.|... .++.|...|-+.|++++|+..+++.++ +.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHH
Confidence 356888999999999999999999999888 677754 788999999999999999999999874 8998 789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
|+.|...|-..|+.++|.+.+.+. .+.|. ....+.|...|...|+..+|+..++.+++++||.+..|-.+...+.-..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 66775 6688999999999999999999999999999999999999988877777
Q ss_pred ChhHHHHHHHHH
Q 003746 644 RWDDVLEVRGMM 655 (798)
Q Consensus 644 ~~~~a~~~~~~m 655 (798)
+|.+-.+-++++
T Consensus 505 dw~D~d~~~~kl 516 (966)
T KOG4626|consen 505 DWTDYDKRMKKL 516 (966)
T ss_pred cccchHHHHHHH
Confidence 887744444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=180.13 Aligned_cols=415 Identities=13% Similarity=0.169 Sum_probs=330.3
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDL---VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 313 (798)
-..+.|++++|++--...-..|. ...-.+-.++.+..+++....--....+. ...-..+|..+...+...|+++.|
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHH
Confidence 33445666666665544433221 22222334555666666544433222221 122345788889999999999999
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh--hhH-HHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003746 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL--ISW-NSMISGYLKCGSVEKARALFDAMIEKD 390 (798)
Q Consensus 314 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (798)
...+..+++.. +..+..|..+..+|...|+.+.|...|....+.|+ ... +-+...+...|++++|...|.+..+.+
T Consensus 136 l~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 136 LALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99999999764 33567788899999999999999999988655444 332 233444556899999999988775443
Q ss_pred ---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 391 ---VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 391 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
.+.|+.|...+-.+|+...|++.|++... +.|+ ...|..+...+...+.++.|...+..+.... +....++..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccc
Confidence 46899999999999999999999999876 4565 3567788888888889999988888777653 234566777
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGL 542 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 542 (798)
|.-.|-..|.+|.|+..+++..+.+ ...|+.|..++...|+..+|.+.|.+... ..|+.. ..+.|...+...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcc
Confidence 8888999999999999999987654 46999999999999999999999999988 567754 78999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
+++|..+|....+ +.|. ....+.|...|-.+|++++|..-+++. .++|+ ...++.+...|...|+.+.|+..+.
T Consensus 370 ~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 9999999999865 6676 778899999999999999999999988 88887 6689999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 620 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+++..+|.-...+..|+.+|...|+..+|+.-++...+....
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999988765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-17 Score=184.44 Aligned_cols=418 Identities=12% Similarity=0.022 Sum_probs=298.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhc
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACAN 306 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 306 (798)
.+..+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.+++.++. .|+. ..+...-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 456778889999999999999998653 67788999999999999999999999998874 4544 467777788889
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (798)
.|+++.|..-+..+...+-..+.... .++.-+.+......+...++.. +.+..++..+.. |......+.+..-++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 99999998877666554322222222 2222222211223344444332 222233333322 22222111121112221
Q ss_pred CCCCH---HHHHHHHHH---HHhCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC
Q 003746 387 IEKDV---VSWSTMISG---YAQHDQFSETLSLFMEMQHHG-IRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458 (798)
Q Consensus 387 ~~~~~---~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 458 (798)
.+.+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 123478999999999998765 3443 4456666677788999999999999998864 2
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVL 534 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 534 (798)
.....+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .|+. ..+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 3456778888999999999999999997764 35678999999999999999999999999984 5654 4677778
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV-A-------TWGALLGA 604 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~ 604 (798)
.++.+.|++++|...|++.++. .| +...++.+..+|...|++++|.+.|++. ...|+. . .++..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8899999999999999999763 45 4788999999999999999999999986 333321 1 12222233
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|++++|+..++++++++|++...+..++.+|...|++++|.+.++...+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445699999999999999999999999999999999999999999999988653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-16 Score=168.01 Aligned_cols=535 Identities=13% Similarity=0.077 Sum_probs=388.2
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHh--ccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHH
Q 003746 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASA--LRLSVFEGKLIHDHVLKAG--FDSDVYVNNTLINMYAVCGDLSAARK 187 (798)
Q Consensus 112 ~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (798)
.+.|...|....+.. ++| ....+.+||. ..+++..|..+|..++... ..+|+.+. +-..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 478888898887653 233 3445566664 5679999999999977654 45666544 3467789999999999
Q ss_pred HHccCCCCCcchHHHHHHHH-Hh-----CCCHHHHHHHHhhCC---CCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCC
Q 003746 188 LFDESPVLDLVSWNSILAGY-VN-----ADNVEEAKFIYNKMP---ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258 (798)
Q Consensus 188 ~f~~~~~~d~~~~~~li~~~-~~-----~g~~~~A~~~~~~m~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 258 (798)
.|.+..+.|+..-++++.-. .. ...+..++.++...- ..|+++.+.|.+.|.-.|+++.+..+...+...+
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998877775555554321 11 223455666655543 3589999999999999999999999998876532
Q ss_pred ------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchh--HHHHHHHHhccCchHHHHHHHHHHHHhCCccchh
Q 003746 259 ------LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV--VVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 259 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 330 (798)
..+|-.+.++|-..|++++|...|.+-.+ ..||.++ +.-+-+.+...|+++.+...|..+.+.. +.+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~e 377 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYE 377 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHH
Confidence 34688899999999999999999977665 4566544 4456677888999999999999998864 45566
Q ss_pred HHHHHHHHHHhCC----CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCHHHHH
Q 003746 331 LQNALIHMYSSCG----EITTAEKLFDAGHNL---DLISWNSMISGYLKCGSVEKARALFDAM--------IEKDVVSWS 395 (798)
Q Consensus 331 ~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~ 395 (798)
+...|...|...+ ..+.|..+..+...+ |...|-.+...+-+..-+ .+..+|... ....+...|
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7777777887665 567788888775443 555677666666554433 224444333 234677889
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc---CCCCCH-----HHHHH-HHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHH---GIRPDE-----ATLVS-VISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
.+...+...|.+++|...|.+.... ...+|. +|... +....-..++.+.|.+.+..+++... .-+..|-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHH
Confidence 9999999999999999999988664 223333 22222 33334566799999999999988642 11222222
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRH--- 539 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~--- 539 (798)
|.-+.-..+...+|...++.... .++..|.-+...|.....+..|.+-|+...+. ...+|..+..+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 22222233567788888887664 46778888888999999999999877776553 234677777777775542
Q ss_pred ---------cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 003746 540 ---------MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMP--MSPDVATWGALLGACKK 607 (798)
Q Consensus 540 ---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 607 (798)
.+..++|+++|.++++ ..| |...-|-+.-.++..|++.+|.++|.+.. ...+..+|-.+..+|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 2457788888888875 345 67888889999999999999999999882 22356789999999999
Q ss_pred cCChhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 608 HGDHEMGERVGRKLVEL--QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|++..|+++|+..++. ..+++.....|+.++.+.|+|.+|.+.........
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999864 34566777889999999999999999887776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-18 Score=183.37 Aligned_cols=288 Identities=15% Similarity=0.135 Sum_probs=200.7
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccchhHH
Q 003746 372 KCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD---EATLVSVISACTHLVALDQG 445 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a 445 (798)
..|++++|...|.++.+. +..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 455555555555555422 334555666666666666666666666655322111 13344555556666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc--------chHHHHHHHHHHcCChHHHHHHHHH
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV--------SSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
..++..+.+.. +.+..+++.++.+|.+.|++++|.+.++.+.+.+. ..|..+...+.+.|++++|+..|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666665542 23455666677777777777777777776654321 1345667778888999999999998
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 518 MKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 518 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
+.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ ...|
T Consensus 206 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 206 ALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8874 344 346777778888899999999999998753 343 456788889999999999999999887 4567
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhCCCccCCc
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS--KGRWDDVLEVRGMMVRRGVVKIPG 665 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~ 665 (798)
+...+..++..+.+.|++++|...++++++..|++......+...+.. .|+.+++..+++.|.++++++.|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 767778889999999999999999999999999987544444333322 568999999999999988888776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-15 Score=160.34 Aligned_cols=569 Identities=12% Similarity=0.075 Sum_probs=272.5
Q ss_pred hhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHhccCChHHHHHHHH
Q 003746 81 MSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLLAQASALRLSVFEGKLIHD 155 (798)
Q Consensus 81 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~t~~~ll~a~~~~~~~~~a~~~~~ 155 (798)
+++|.+.|..... +|+-..--=.......|++..|+.+|...+... .+||... .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4666666665533 232222111222334567777777777755332 2334322 11233445566666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCC--
Q 003746 156 HVLKAGFDSDVYVNNTLINMYAVCGD---LSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-- 227 (798)
Q Consensus 156 ~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 227 (798)
.+.+.. |.++..+-.|.-+-....+ +..+...+...- ..|++..+.|...|.-.|+++.+..+...+....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 665544 1222222222222122222 223333333211 3455555666666666666666666655554322
Q ss_pred ----chHHHHHHHHHhhcCCHHHHHHHHhcCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHH
Q 003746 228 ----IIASNSMIVLFGRKGNVAEACRLFKEMPKK---D-LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVV 298 (798)
Q Consensus 228 ----~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 298 (798)
...|-.+..+|-..|++++|...|.+..+. + +..+--+...|.+.|+++.+...|+..... .||.. |..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHH
Confidence 123445556666666666666666554432 1 223444555566666666666666665542 24333 222
Q ss_pred HHHHHHhccC----chHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH------HHHHHHHHh-cCCCChhhHHHHH
Q 003746 299 SVLSACANLT----VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI------TTAEKLFDA-GHNLDLISWNSMI 367 (798)
Q Consensus 299 ~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~------~~A~~~~~~-~~~~~~~~~~~li 367 (798)
.+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+ ..|..++.. +..+.+...|.+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 2222233332 2233333333333322 33344444444444332221 222222222 3334455555666
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-------CH-----H-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003746 368 SGYLKCGSVEKARALFDAMIEK-------DV-----V-SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL-VSVI 433 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll 433 (798)
..+...|+++.|...|+..... |. + +--.+...+-..++.+.|.+.|...... .|.-++. .-++
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 5566666666666666554221 11 0 1112333444445666666666665553 3333321 1111
Q ss_pred HHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC-----CCcchHHHHHHHHH-----
Q 003746 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-----KGVSSWNALIIGFA----- 503 (798)
Q Consensus 434 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~----- 503 (798)
-..-..+...+|...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+.+ .|..+.-+|...|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 11112244555555555554432 23344444455555555555555553333221 13333333333322
Q ss_pred -------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc
Q 003746 504 -------MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576 (798)
Q Consensus 504 -------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 576 (798)
..+..++|+++|.+.+... +-|...-+.+...++..|++.+|..+|.++.+. ..-...+|-.+...|..+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHH
Confidence 1233455666666665531 223334455555556666666666666666543 222344555666666666
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Q 003746 577 GMLKEAEELIESM----PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI-------------- 638 (798)
Q Consensus 577 g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-------------- 638 (798)
|++-.|+++|+.. .-+.+..+...|..++...|.+.+|.+.+..+..+.|.++.....++-+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 6666666666654 1123555666666666666666666666666666666666554444332
Q ss_pred -----HHhcCChhHHHHHHHHHHhCCCc
Q 003746 639 -----HASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 639 -----~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
....+..+.|.++|..|...+-+
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23445678888999988876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-17 Score=177.32 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=214.7
Q ss_pred HHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCh
Q 003746 338 MYSSCGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD-------VVSWSTMISGYAQHDQF 407 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 407 (798)
.+...|++++|...|++.. +.+..++..+...+.+.|++++|..+++.+.... ...|..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455677777777776632 2233456667777777777777777777764321 24567777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCc----HHHHhHHHhhHHhcCCHHHHHHH
Q 003746 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN----SILGTTLIDMYMKLGCVDNALEV 483 (798)
Q Consensus 408 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 483 (798)
++|+.+|+++.+.. +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877642 34566777777778888888888888887776653332 22455677788899999999999
Q ss_pred HhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 484 FHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 484 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
|+++.+. +...+..+...|.+.|++++|+++|+++.+.+......++..+..++...|++++|...++++.+ ..
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EY 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Confidence 9987643 35578888999999999999999999999753222245678888999999999999999999976 35
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHh
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKK---HGDHEMGERVGRKLVE 623 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 623 (798)
|+...+..++..|.+.|++++|.++++++ ...|+...++.++..+.. +|+.+++...++++++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 77777789999999999999999999876 667999999988887764 5688999999988875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-15 Score=172.17 Aligned_cols=269 Identities=14% Similarity=0.080 Sum_probs=206.1
Q ss_pred cCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHH
Q 003746 373 CGSVEKARALFDAMIEK------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQG 445 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 445 (798)
.+++++|.+.|+..... +...|+.+...+...|++++|+..|++.... .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877532 3456888888888899999999999988764 454 45677777778888999999
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99999888764 345678888999999999999999999987643 4567888889999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-ch-------HHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 523 VTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KH-------YGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 523 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
.|+ ...+..+..++...|++++|.+.|++.++ +.|+. .. ++.....+...|++++|.+++++. ...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 455 45788888899999999999999999875 34431 11 122223344579999999999986 555
Q ss_pred CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|+ ...+..+...+...|++++|++.+++++++.+.....+ ....+.+|.++.....+
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 64 56789999999999999999999999999887644322 22234455555554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-15 Score=174.04 Aligned_cols=389 Identities=10% Similarity=0.054 Sum_probs=231.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHhc
Q 003746 231 SNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVVSVLSACAN 306 (798)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 306 (798)
..-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+. .|+.. ....+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34445556667777777777776543 23334677777777777777777777776653 23322 23333344445
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (798)
.|+.++|...+..+++.. +.+.. +..+...+. ..|+.++|...++++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~-------------------------------~~g~~~~Al~~l~~a 142 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK-------------------------------RAGRHWDELRAMTQA 142 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH-------------------------------HCCCHHHHHHHHHHH
Confidence 555555555555555441 22223 444444555 455555555555444
Q ss_pred CCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHH-----hcccch---hHHHHHH
Q 003746 387 IEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA------TLVSVISAC-----THLVAL---DQGKWIH 449 (798)
Q Consensus 387 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~-----~~~~~~---~~a~~~~ 449 (798)
... +...+..+...+...|..++|++.+++... .|+.. .....+... ...+.+ +.|...+
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 221 333344444444445555555554443321 11110 000111111 111122 4555555
Q ss_pred HHHHHc-CCCCcH--HHHhHH---HhhHHhcCCHHHHHHHHhhcCCCC--cc--hHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 450 AYIRKN-GLKINS--ILGTTL---IDMYMKLGCVDNALEVFHGTEEKG--VS--SWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 450 ~~~~~~-~~~~~~--~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
+.+.+. ...|+. ...... +..+...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555543 112211 111111 223345678888888888877543 11 11224667888888888888888877
Q ss_pred HCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------CcCC---cchHHHHHHHHHhcCCHHH
Q 003746 520 KSGVTPN-----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----------LEPN---SKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 520 ~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 581 (798)
... |. ......+..++...|++++|.++++.+.+... -.|+ ...+..+..++...|++++
T Consensus 300 ~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 642 22 23455566677888888888888888865311 0122 1234567788889999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 582 AEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 582 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++.++++ ...| +...+..+...+...|++++|++.++++++++|++...++.++..+...|+|++|.++++.+.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999887 3334 577888899999999999999999999999999999999999989999999999999998887644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=172.38 Aligned_cols=350 Identities=10% Similarity=0.056 Sum_probs=204.2
Q ss_pred hcCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHH
Q 003746 240 RKGNVAEACRLFKEMPKK------DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313 (798)
Q Consensus 240 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 313 (798)
|..+++.-.-.|...++. +....-.++..+.+.|++++|+.+++........+... +..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHH
Confidence 344555555555544431 23334455666777777777777777776643222222 22222333345555555
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 003746 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KD 390 (798)
Q Consensus 314 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~ 390 (798)
...+..+++.. +.+...+..+...|. +.|+.++|...|++... .+
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~-------------------------------~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLL-------------------------------KSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHHHhCCCc
Confidence 55555554432 222334444444555 55555555555555432 23
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...|..+...+.+.|++++|...++++.... |+.......+..+...|++++|...+..+++....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 4455555566666666666666665554432 22111111122345556666666666655554322333333444556
Q ss_pred HHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCc
Q 003746 471 YMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADK----SLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGL 542 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 542 (798)
+.+.|++++|...|+..... +...+..+...|...|++++ |+..|++..+ ..|+. ..+..+...+...|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCC
Confidence 66677777777777665532 34566667777777777764 7788888777 34554 367777778888888
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChhHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVAT-WGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
+++|...++++++ ..|+ ...+..+...|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|+..++
T Consensus 300 ~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 300 NEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888765 3454 556667778888888888888888776 34555433 3345667778888888888888
Q ss_pred HHHhcCCCCc
Q 003746 620 KLVELQPDHD 629 (798)
Q Consensus 620 ~~~~~~p~~~ 629 (798)
++++..|++.
T Consensus 377 ~al~~~P~~~ 386 (656)
T PRK15174 377 HYIQARASHL 386 (656)
T ss_pred HHHHhChhhc
Confidence 8888888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-15 Score=171.79 Aligned_cols=408 Identities=11% Similarity=0.055 Sum_probs=283.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC-C--CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 003746 199 SWNSILAGYVNADNVEEAKFIYNKMPE-R--NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQN 272 (798)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 272 (798)
...-.+......|+.++|++++.+... . +...+..+...+.+.|++++|.++|++... .+...+..++..+...
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 344455667789999999999999875 2 344588999999999999999999999543 3566788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHH
Q 003746 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352 (798)
Q Consensus 273 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 352 (798)
|++++|+..+++..+. .|+...+..+..++...|+.+.|...+..+++.. +.+..++..+...+.+.|..++|.+.+
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999999875 4544446677777889999999999999999875 335556666788888777777777777
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHc-CCCCCHH-
Q 003746 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF---SETLSLFMEMQHH-GIRPDEA- 427 (798)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~pd~~- 427 (798)
++... ++.....+ ....+..... ..+.......+++ ++|++.++.+... ...|+..
T Consensus 174 ~~~~~-~p~~~~~l--------~~~~~~~~~r----------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 174 DDANL-TPAEKRDL--------EADAAAELVR----------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HhCCC-CHHHHHHH--------HHHHHHHHHH----------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 65443 22100000 0000000000 0000111112223 5667777776643 1223221
Q ss_pred HHH----HHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-------cchH
Q 003746 428 TLV----SVISACTHLVALDQGKWIHAYIRKNGLK-INSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-------VSSW 495 (798)
Q Consensus 428 t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~ 495 (798)
.+. ..+.++...++.++|+..++.+.+.+.+ |+. ....+...|...|++++|...|+++...+ ...+
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1123344557777777777777766532 221 12224667888888888888888765432 1235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSG-----------VTPNE---ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 561 (798)
..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|.+.++++... .|
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P 390 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---AP 390 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence 556667788888888888888887642 12342 23455667888999999999999999763 45
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 562 -NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 562 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
+...+..+..++...|++++|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5788899999999999999999999988 55665 66777888888999999999999999999999997544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-14 Score=164.60 Aligned_cols=427 Identities=10% Similarity=0.055 Sum_probs=221.6
Q ss_pred HHhCCCHHHHHHHHhhCCCCCchH---HHHHHHHHhhcCCHHHHHHHHhcCCCCCcccH-HHH--HHHHHhcCChhHHHH
Q 003746 207 YVNADNVEEAKFIYNKMPERNIIA---SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW-SAL--ISCYEQNEMYEEALV 280 (798)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 280 (798)
..+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445666666666666665533321 22666666677777777777777766543333 333 346667788888888
Q ss_pred HHHHHHHCCCCCCc-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc---C
Q 003746 281 LFMNMIDHRVMVDE-VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG---H 356 (798)
Q Consensus 281 l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~ 356 (798)
+|+++.+.. |+. ..+..+...+...+..+.|...+..+.+. .|+...+..++..+...++..+|++.+++. .
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888887632 332 22223333334444444444444444332 222222333333333333333344444442 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003746 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435 (798)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 435 (798)
+.+...+..+...+.+.|-...|.++..+-+.- +...+.-+- .+.|.+.. +.+..|+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~~v----r~a~~~~~--------- 258 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAEQV----RMAVLPTR--------- 258 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHHHH----hhcccccc---------
Confidence 122333344444444444444444444433211 111110000 00000000 00000000
Q ss_pred Hhccc---chhHHHHHHHHHHHc-CCCCc-HHH-HhHH---HhhHHhcCCHHHHHHHHhhcCCCC--c--chHHHHHHHH
Q 003746 436 CTHLV---ALDQGKWIHAYIRKN-GLKIN-SIL-GTTL---IDMYMKLGCVDNALEVFHGTEEKG--V--SSWNALIIGF 502 (798)
Q Consensus 436 ~~~~~---~~~~a~~~~~~~~~~-~~~~~-~~~-~~~l---i~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~ 502 (798)
.... -.+.|..-++.+... +-.|. ... ..+. +-++.+.|+..++++.|+.+.... + .+-.++.++|
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0001 122233333333331 11121 111 1222 234456677777777777776433 2 2445566777
Q ss_pred HHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------CcCC---cc
Q 003746 503 AMNGLADKSLEMFSEMKKSGV-----TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----------LEPN---SK 564 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~ 564 (798)
...+++++|+.+|+++..... .++......|..++...+++++|..+++++.+... -.|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 777777777777777655321 11222345667777777777777777777754211 0122 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.+..++..+...|++.+|++.++++ ..-| |...+..+...+...|++..|++.++.+..++|++......++.++...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 3445566677777788887777777 2223 6777777777777778888888777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHhCC
Q 003746 643 GRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~ 659 (798)
|+|.+|.++.+.+.+..
T Consensus 498 ~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 498 QEWHQMELLTDDVISRS 514 (822)
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 88887777777666543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-15 Score=171.24 Aligned_cols=316 Identities=9% Similarity=-0.025 Sum_probs=251.8
Q ss_pred HHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHH
Q 003746 336 IHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSE 409 (798)
Q Consensus 336 i~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 409 (798)
+....+.|+.++|..+++.. .+.+...+..++.+....|+.++|...|+++.. .+...|..+...+.+.|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 34445566666666666542 333344455555666689999999999998853 356788999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC
Q 003746 410 TLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488 (798)
Q Consensus 410 A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 488 (798)
|+..|+++... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+ ..+.+.|++++|...++.+.
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 454 566777888899999999999999988776544333 33333 34788999999999999876
Q ss_pred CCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHH----HHHHHHHHHHhCCC
Q 003746 489 EKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDE----GHRHFNSMIQEHRL 559 (798)
Q Consensus 489 ~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~ 559 (798)
+.+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|+++++ +
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l 279 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---F 279 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---h
Confidence 542 234455667889999999999999999985 455 4467778889999999986 8999999976 4
Q ss_pred cCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 560 EPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 560 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
.|+ ...+..+...|.+.|++++|...+++. ...| +..++..+..++...|++++|+..++++++..|+++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 564 778899999999999999999999988 4455 4667888999999999999999999999999999887777788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 003746 637 NIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.++...|++++|.+.++...+...
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999877544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=156.28 Aligned_cols=433 Identities=10% Similarity=0.076 Sum_probs=257.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHH---HHHHHhCCCHHHHHH
Q 003746 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI---LAGYVNADNVEEAKF 218 (798)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~ 218 (798)
.+.|++..|...+.++.+......+.++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666666665421112333 677777777777788777777665544433332 335666677777777
Q ss_pred HHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCC
Q 003746 219 IYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ--NEMYEEALVLFMNMIDHRVMVD 293 (798)
Q Consensus 219 ~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 293 (798)
+|+++.+. ++.++..++..|.+.++.++|++.++++...+......+..+|.. .++..+|++.++++.+.. |+
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~ 201 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PT 201 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CC
Confidence 77777653 345566667777777888888888877765443322223334443 455555888888877742 43
Q ss_pred chhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh
Q 003746 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN-LDLISWNSMISGYLK 372 (798)
Q Consensus 294 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 372 (798)
. ...+..++....+.|-...|.++.++.+. -+...+.-|
T Consensus 202 n----------------------------------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l------ 241 (822)
T PRK14574 202 S----------------------------------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL------ 241 (822)
T ss_pred C----------------------------------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH------
Confidence 2 33333444444555555555555443221 000000000
Q ss_pred cCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHhcccchh
Q 003746 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ---FSETLSLFMEMQHH-GIRPDE-ATL----VSVISACTHLVALD 443 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~t~----~~ll~a~~~~~~~~ 443 (798)
+.+.|.+..+....++. ...++ .+.|+.-++.+... +-.|.. .-+ .--+-++...++..
T Consensus 242 --~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 242 --ERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred --HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 01111111111100000 00111 23333334443321 111211 111 11233455566666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCChHHHHHH
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---------GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
++++.++.+...+.+....+-.++.++|...+++++|..+++.+... +......|.-+|...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 66666666666665544556666677777777777777777665321 122245667777777777777777
Q ss_pred HHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH
Q 003746 515 FSEMKKSG-------------VTPNEIT-FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 515 ~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 579 (798)
++++.+.. ..||-.. +..++..+...|++.+|.+.++++.. ..| |......+.+++...|.+
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCH
Confidence 77777621 2233333 34455778889999999999999976 345 788999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.+|++.++.. ...| +..+....+.++...+++++|..+.+++++..|+++.+-
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999877 4456 466777888888899999999999999999999997543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-11 Score=123.63 Aligned_cols=600 Identities=14% Similarity=0.100 Sum_probs=417.5
Q ss_pred hHHHHHHHHHHHHhCC-CCchhhhhhccccccCccCCCChhHHHHhhhcC---CCCCcchHHHHHHHHHcCCCchHHHHH
Q 003746 43 FKQFTQILSQMILTGL-IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL---ESPNGFIFNTMMRAYIQRNVPQQAICL 118 (798)
Q Consensus 43 ~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 118 (798)
+..++.+...+.++.+ .|.-.+.++-+. - ..|.+..|+.+...- -+++...|---| +-..++.|..+
T Consensus 267 ikKaR~llKSvretnP~hp~gWIAsArLE----E-vagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 267 IKKARLLLKSVRETNPKHPPGWIASARLE----E-VAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHH----H-HhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHH
Confidence 4556666666666543 233344443333 1 456666666665532 224444443222 22334444444
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CC
Q 003746 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VL 195 (798)
Q Consensus 119 ~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~ 195 (798)
.....+. -|+... .-++|---..+...-..++..+++. ++.++..|-..+. ....++|+.++.+.. ..
T Consensus 338 vA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 338 VANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc
Confidence 4444322 122221 1222222222333344555555554 2555556655443 344555666665543 12
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--------CCcccHHH
Q 003746 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPE---RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--------KDLVSWSA 264 (798)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~ 264 (798)
....| -+|++..-++.|..+++..++ .+..+|.+-...=-..|.++...++.++-.. -|...|-.
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 22233 345555566666666665544 4666776666666677777777777665321 14445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCc--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhC
Q 003746 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDE--VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342 (798)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 342 (798)
=...+-..|..--+..+....+.-|+.-.. .|+...-..|.+.+.++-++.++..+++. ++.+..+|...+..--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 666666667777777777777766655432 47777788888888888888888888765 466677788877777788
Q ss_pred CCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 003746 343 GEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFME 416 (798)
Q Consensus 343 g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 416 (798)
|..+.-..+|++ ..+.....|-.....+-..|++..|+.++.+..+. +...|-+-+..-..+.+++.|..+|.+
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 888888888887 45566677888888888899999999998887533 566788888888999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--C-Ccc
Q 003746 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--K-GVS 493 (798)
Q Consensus 417 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 493 (798)
.... .|+...|.--++.---.+..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+ | .+.
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 8764 566666665555555678899999999988886 444566788888889999999999998876554 2 356
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|-.+...--+.|..-+|..++++....+ +-|...|...+..-.+.|+.++|..+..+++++ .+.+...|..-|.+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhc
Confidence 78888888888999999999999988764 335568899999999999999999999999875 455678888889999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
.+.++-..+.+.+++. +.|+.+.-++...+....+++.|.+.|+++++.+|++..++..+-..+...|.-++-.++++
T Consensus 798 ~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888877777777776 45677777888888888999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCccceEEECCEE
Q 003746 654 MMVRRGVVKIPGCSMIEANGII 675 (798)
Q Consensus 654 ~m~~~~~~~~~~~s~i~~~~~~ 675 (798)
+..... +..|..|+.+...+
T Consensus 876 ~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 876 KCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHhccC--CCCCcHHHHHhhhH
Confidence 887644 34566777554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-14 Score=139.89 Aligned_cols=451 Identities=15% Similarity=0.127 Sum_probs=299.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCCC----Ccc-hHHHHHHHHHhCCCHHHHHHHHhhCCCC--------CchHHH
Q 003746 166 VYVNNTLINMYAVCGDLSAARKLFDESPVL----DLV-SWNSILAGYVNADNVEEAKFIYNKMPER--------NIIASN 232 (798)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~ 232 (798)
-.+...|..-|.......+|+..++-+... +.- .--.+...+.+...+.+|++.|+..... .+...+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 344555666777777788888877765522 211 1112344567778888888888765542 233455
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
.+.-.+.+.|++++|..-|+...+ ||..+--.|+-++..-|+-++..+.|++|+.-...||..-|.. ...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~d-- 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKD-- 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcC--
Confidence 566667888999999999987653 6777666666677778888999999999987655555543310 000
Q ss_pred HHHHHHHHHHHHhCCccchhHHHH-----HHHHHHhCCCH--HHH----HHHHHhcCCCChhh---H----------H--
Q 003746 311 KAGTSVHALAVKIGIECYINLQNA-----LIHMYSSCGEI--TTA----EKLFDAGHNLDLIS---W----------N-- 364 (798)
Q Consensus 311 ~~a~~i~~~~~~~g~~~~~~~~~~-----li~~y~~~g~~--~~A----~~~~~~~~~~~~~~---~----------~-- 364 (798)
.|+....|. .+.-.-+..+- +++ .++..-.+.||... | .
T Consensus 353 ---------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 353 ---------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred ---------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 111111111 11111111110 111 11111111222100 1 0
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHhcCCCCHHHH----HHHH-HHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003746 365 ------SMISGYLKCGSVEKARALFDAMIEKDVVSW----STMI-SGYAQHD-QFSETLSLFMEMQHHGIRPDEATLVSV 432 (798)
Q Consensus 365 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~li-~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~l 432 (798)
.-...|.++|+++.|.++++-...+|..+- |.|- --|.+.| ++..|.+.-+...... +-+......-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 011246799999999999888876654432 2222 2334433 4667766666554332 2333333333
Q ss_pred HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChH
Q 003746 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE---EKGVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 433 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 509 (798)
-+.....|+++.|...+.+.+...-.-....|| +.-.+.+.|++++|++.|-++. ..++...-.+.+.|-...+..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 344456789999999999998765433344444 3335778999999999997765 346667777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
+|++++.+.... ++.|...+..|...|-+.|+-.+|.+++-.- +..-| +.++...|..-|....-+++|..+|++
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999877663 3444557788889999999999999887654 44555 799999999999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 589 M-PMSPDVATWGALLGAC-KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 589 ~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
. -++|+..-|..++..| ++.|++..|..+++......|.+..+.-.|..++...|..
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 8 5689999999998887 6789999999999999999999999998888888877753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-11 Score=133.36 Aligned_cols=531 Identities=13% Similarity=0.103 Sum_probs=322.1
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 003746 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188 (798)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (798)
.|+.++|.+++.+.++.. +.+...|.+|...+-..|+.+.+...+-.+.-.. +.|...|..+.....+.|.++.|+-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 366666666666666543 4445556666666666666665555444333333 44556666666666666666666666
Q ss_pred HccCCCCCcchHHHH---HHHHHhCCCHHHHHHHHhhCCCCCc----h----HHHHHHHHHhhcCCHHHHHHHHhcCCC-
Q 003746 189 FDESPVLDLVSWNSI---LAGYVNADNVEEAKFIYNKMPERNI----I----ASNSMIVLFGRKGNVAEACRLFKEMPK- 256 (798)
Q Consensus 189 f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~y~~~g~~~~A~~~f~~~~~- 256 (798)
|.+....++.-|-.+ ...|-+.|+...|++.|.++.+.++ . .--..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 665553333333332 3445566666666666666654332 1 111234445556666777777766554
Q ss_pred -C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------------chhH----HHHHHHHhc
Q 003746 257 -K---DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD----------------------EVVV----VSVLSACAN 306 (798)
Q Consensus 257 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~----~~ll~a~~~ 306 (798)
. +...+|.++..|.+...++.|......+.....++| ...| .-+.-+..+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 344678888888888888888888877766222221 1111 122333445
Q ss_pred cCchHHHHHHHHHHHHhC--CccchhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHH
Q 003746 307 LTVVKAGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGH----NLDLISWNSMISGYLKCGSVEKAR 380 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 380 (798)
....+....+.....+.. ...++..+..+.++|...|++.+|.++|.... -.+...|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 666666677777777776 44567788899999999999999999997632 234568999999999999999999
Q ss_pred HHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 381 ALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQ--------HHGIRPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 381 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
..|+..... +...--+|...+.+.|++++|++.+..+. ..+..|+..........+.+.|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999988543 33444556677889999999999998864 2234455555555555666777776644443
Q ss_pred HHHHHcC----------------------CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhc------CCCC--cc----hH
Q 003746 450 AYIRKNG----------------------LKINSILGTTLIDMYMKLGCVDNALEVFHGT------EEKG--VS----SW 495 (798)
Q Consensus 450 ~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~--~~----~~ 495 (798)
..++... ..........++.+-.+.++......-...- ...+ +. .+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 3333211 1111122222333333333322111111100 0111 11 23
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC---cchHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGV--TPNEI--TF-VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN---SKHYG 567 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~ 567 (798)
.-++..+++.++.++|+.+...+..... .++.. .+ ...+.++...+++..|..+++.|+..++...+ ...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4567788999999999999988876432 22221 22 33456677889999999999999876554433 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH--HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPDVATWGAL--LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
+..+.+.+.|+-.--.+++... ..+|+......+ ..-....+.+.-|+..+-++....|++|.+-..|+-++.+
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6667777777655555555554 223332111112 2223456788899999999999999999888888766644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-12 Score=123.42 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=159.7
Q ss_pred HHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 219 ~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
++-+.......++..||.+.+|--..+.|.+++.+.... +..++|.+|.+-.- ....+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 333333444455666666666666666677776665432 55677777765432 2236788888888888888
Q ss_pred hhHHHHHHHHhccCchHH----HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHH-HHHHH----h--------cCC
Q 003746 295 VVVVSVLSACANLTVVKA----GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFD----A--------GHN 357 (798)
Q Consensus 295 ~t~~~ll~a~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~----~--------~~~ 357 (798)
.||+++|++.++.|+++. +.+++.+|.+.|++|...+|.-+|..+.+.++..+. ..++. + ..+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 899988888888887665 446778888888888888888888888888776543 22221 1 122
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 003746 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEK--------D---VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426 (798)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 426 (798)
.|..-+.+-+..|....+.+.|.++-.-.... + ..-|..+....++....+.-...|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34445666666676777777777776554322 1 123555666777777788888888888777777888
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHcCC
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGL 457 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 457 (798)
.+...++++....+.++-..+++..++..|.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 8888888887777777777777777766653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-11 Score=128.87 Aligned_cols=441 Identities=17% Similarity=0.106 Sum_probs=286.9
Q ss_pred CCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~ 154 (798)
.|++++|.+++.++-. ++...|..|...|-+.|+.+.+...+-..... .+.|..-|..+..-..+.|++..|+-++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999998744 57789999999999999999998876554433 3556677888888889999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc-chH-------HHHHHHHHhCCCHHHHHHHHhhCCC-
Q 003746 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL-VSW-------NSILAGYVNADNVEEAKFIYNKMPE- 225 (798)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~~- 225 (798)
..+++.. +++....-.-..+|-+.|+...|..-|.++...++ +.| -.++..+...++.+.|++.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999988 56666666667899999999999988887664332 212 2335566677777889988887765
Q ss_pred ----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--------------------------CCcccHH----HHHHHHHh
Q 003746 226 ----RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--------------------------KDLVSWS----ALISCYEQ 271 (798)
Q Consensus 226 ----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------------------~~~~~~~----~li~~~~~ 271 (798)
.+...++.++.+|.+...++.|......+.. ++..+|+ -+.-++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2445678888888888888888777655432 1112222 12233444
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHH
Q 003746 272 NEMYEEALVLFMNMIDHRVMV--DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349 (798)
Q Consensus 272 ~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 349 (798)
....+....+........+.| +...|.-+..++...|.+..|..++..+......-+..+|--+..+|-..|.++.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444444444444455555333 445677788889999999999999999988766667888999999999999999999
Q ss_pred HHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH-----HH-------HHHHHHHHhCCChHHHHHHH
Q 003746 350 KLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFDAMIEKDVV-----SW-------STMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 350 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~l~ 414 (798)
+.|++....+ ...-.+|-..+.+.|+.|+|.+++..+..+|.. .| -.....+.+.|+.++=+..-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9998844333 334455666788899999999999988665521 11 22344566677776655544
Q ss_pred HHHHHcC----------------------CCCCHHHHHHHHHHHhcccchhHHHH------HHHHHHHcCCCCcH--HHH
Q 003746 415 MEMQHHG----------------------IRPDEATLVSVISACTHLVALDQGKW------IHAYIRKNGLKINS--ILG 464 (798)
Q Consensus 415 ~~m~~~g----------------------~~pd~~t~~~ll~a~~~~~~~~~a~~------~~~~~~~~~~~~~~--~~~ 464 (798)
..|...+ .+-...+.-.+..+-.+.++...... ........|+..+. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 4443211 01111122222222222222111111 11111122333222 244
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCCCc---------chHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEKGV---------SSWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
.-++..+++.|+.++|..+...+..-++ ..-..++.+....+++..|...++.|..
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566677777777777777665554221 1234455566667777777777777665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-12 Score=123.73 Aligned_cols=361 Identities=11% Similarity=0.071 Sum_probs=243.7
Q ss_pred CCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 157 (798)
.|.+.+ ++-+..++...+|..||.++++-...+.|.++|++......+.+..+|+.+|.+-+ +..++++..+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHH
Confidence 344444 44445556777999999999999999999999999999888999999999998864 44458999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHc----cCC----CCCcchHHHHHHHHHhCCCHHH-HHHHHhhCCC---
Q 003746 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD----ESP----VLDLVSWNSILAGYVNADNVEE-AKFIYNKMPE--- 225 (798)
Q Consensus 158 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~--- 225 (798)
+...+.||.+++|+++...++.|+++.|++.+- +|+ +|...+|..+|..+++.++..+ |..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999999988876653 444 7888999999999999988755 4444444432
Q ss_pred ---------CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC-----------CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 226 ---------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKK-----------DLVSWSALISCYEQNEMYEEALVLFMNM 285 (798)
Q Consensus 226 ---------~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m 285 (798)
.|...+..-++.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+..|..|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14445566667777888888888886554321 2235667788889999999999999999
Q ss_pred HHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 003746 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365 (798)
Q Consensus 286 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 365 (798)
.-.-.-|+..+...++++....+.++...+++..++..|......+.--++..+++. ...|+...-.-
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~------------k~hp~tp~r~Q 492 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD------------KLHPLTPEREQ 492 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC------------CCCCCChHHHH
Confidence 988888999999999999999999999999999999888655444444443333311 11222111111
Q ss_pred HHHHHHhcC-CH-HHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHh
Q 003746 366 MISGYLKCG-SV-EKARALFDAMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI----RPDEATLVSVISACT 437 (798)
Q Consensus 366 li~~~~~~g-~~-~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~ 437 (798)
+-....++- ++ +..+..-.+|... .....+.....+.+.|+.++|.++|....+.+- .|......-++.+..
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 111111110 01 1111111122211 334455566666677777777777766654432 222233334444444
Q ss_pred cccchhHHHHHHHHHHHcCC
Q 003746 438 HLVALDQGKWIHAYIRKNGL 457 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~ 457 (798)
..++..+|...++.+...+.
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCc
Confidence 55555555555555544443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-11 Score=131.28 Aligned_cols=543 Identities=11% Similarity=0.040 Sum_probs=313.5
Q ss_pred HHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 003746 48 QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP----NGFIFNTMMRAYIQRNVPQQAICLYKLML 123 (798)
Q Consensus 48 ~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (798)
.++..+...|+.|+..+|.+|+. .|+ ..|+++.|- +|..|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLia--rYc-~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIA--RYC-TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHH--HHc-ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 35666778899999999999999 999 999999998 88888653 5567899999988888887765
Q ss_pred hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC-CC-CcchHH
Q 003746 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-VL-DLVSWN 201 (798)
Q Consensus 124 ~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~-d~~~~~ 201 (798)
.|-+.||..|+.+|+..||+.. ++...+ -.-.++..+...|--..-..++-.+. .| -...-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~ 143 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE 143 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH
Confidence 6888899999999999998766 222222 12233344445554444444444322 11 111122
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhh-cCCHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCChh
Q 003746 202 SILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGR-KGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYE 276 (798)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~-~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~ 276 (798)
..+.-.+-.|.++.+++++..++.. +++.. .+.-... ...+++-...-.... .++..++.+++.+-..+|+.+
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3344455567777777777766542 11111 1111111 112222222222222 479999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 003746 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356 (798)
Q Consensus 277 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 356 (798)
.|..++.+|++.|++.+...|..+|-+ .++......+..-|...|+.|+..++...+-...+.|....+....+...
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999999998876 78888899999999999999999999988888877666433333222222
Q ss_pred CCChhhHHHHHHHHHhcCCHHH--HHHHHHhcCC-------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC
Q 003746 357 NLDLISWNSMISGYLKCGSVEK--ARALFDAMIE-------KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD 425 (798)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd 425 (798)
-.....+..+.++.....+++. +.-+....+. .....|...+ -...+|+-++..++-..|..-- ..++
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcc
Confidence 2222233333333111111111 1111111111 1223333222 2223566666666655553211 1111
Q ss_pred -HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHh--HHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHH
Q 003746 426 -EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT--TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502 (798)
Q Consensus 426 -~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 502 (798)
...|.. ...++|.++.+... ...++ ..+.............+..... .+|
T Consensus 378 ~V~a~~~------------~lrqyFrr~e~~~~---~~i~~~~qgls~~l~se~tp~vsell~~l-rkn----------- 430 (1088)
T KOG4318|consen 378 NVDAFGA------------LLRQYFRRIERHIC---SRIYYAGQGLSLNLNSEDTPRVSELLENL-RKN----------- 430 (1088)
T ss_pred hHHHHHH------------HHHHHHHHHHhhHH---HHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccc-----------
Confidence 111111 22333433333211 11111 1111111111222222222222 111
Q ss_pred HHcCChHHHHHHHHH-----HHHCCCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 503 AMNGLADKSLEMFSE-----MKKSGVTP-------NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~-----m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
-+++-+.. ..+. ..| -...-+.++..|...-+..++...-+.. +.+-+ ...|..||
T Consensus 431 -------s~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li 498 (1088)
T KOG4318|consen 431 -------SFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLI 498 (1088)
T ss_pred -------hHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHh
Confidence 11111100 1100 111 1112344555555555555555443333 21112 26788999
Q ss_pred HHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh---cCCCCcchHHHHHHHHHhc
Q 003746 571 DLLGRAGMLKEAEELIESMP-----MSPDVATWGALLGACKKHGDHEMGERVGRKLVE---LQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~ 642 (798)
+.+.....+++|..+.++.. ..-|..-+..+.+...+++....+..+++++.+ ..|........+.+--+..
T Consensus 499 ~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~a 578 (1088)
T KOG4318|consen 499 KLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPA 578 (1088)
T ss_pred hhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhc
Confidence 99999999999999988873 223445677788888888888888888877765 3444445555666777888
Q ss_pred CChhHHHHHHHHHHhCCCcc
Q 003746 643 GRWDDVLEVRGMMVRRGVVK 662 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~~~~ 662 (798)
|+.+...+..+-+...|+.-
T Consensus 579 gqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 579 GQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred cCHHHHHHHHHHHHHhhhhh
Confidence 99999999999888887753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-09 Score=110.99 Aligned_cols=568 Identities=12% Similarity=0.055 Sum_probs=322.5
Q ss_pred hhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 003746 66 SRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142 (798)
Q Consensus 66 ~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~ 142 (798)
++++. .+....+++..|+.++....+ .+...|-+-.+.--..|.+..|..+..+=.+. .+-+...| |.++
T Consensus 254 ~sm~p--~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai- 326 (913)
T KOG0495|consen 254 NSMIP--TSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI- 326 (913)
T ss_pred HhcCC--CccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-
Confidence 44555 444256777888888887654 45667877666666778887777665432221 22333334 3332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHH
Q 003746 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFI 219 (798)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 219 (798)
+....+.|+.+...+++.- +.++..|---++.-. +...=.+++.... ..++..|-. .+.....+.|.-+
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~daril 398 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARIL 398 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHH
Confidence 4556777888888888764 455555543333221 2222234443322 234445544 3445566667777
Q ss_pred HhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCC
Q 003746 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMN----MIDHRVMV 292 (798)
Q Consensus 220 ~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p 292 (798)
+.+..+--+. ..-|.-+|++..-++.|..+++...+ .+...|-+-...--.+|+.+...++..+ +...|+..
T Consensus 399 L~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i 477 (913)
T KOG0495|consen 399 LERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI 477 (913)
T ss_pred HHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee
Confidence 7776552211 12244456677788899999887654 4788898888888889999988888765 45678888
Q ss_pred CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc--hhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHH
Q 003746 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY--INLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMI 367 (798)
Q Consensus 293 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li 367 (798)
+...|..=..+|-..|..-....|...++..|++.. -.+++.-.+.+.+.+.++-|+.+|.. ..+.+...|....
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 888888888888888888888888888777776432 34666666667766666666666643 2333444555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 368 SGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
..=-..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+.... +...+...+..-.....++.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHH
Confidence 555555555555555555532 23445555555555556666666665555543211 33444444444555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--C-cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--G-VSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|+.++...... .++..+|.--+...--.+..++|.+++++..+. + ...|-.+...+-+.++.+.|.+.|..-.+
T Consensus 637 aR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k- 713 (913)
T KOG0495|consen 637 ARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK- 713 (913)
T ss_pred HHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-
Confidence 55555555442 234444443344344445555555555544432 1 12444444555555555555555444333
Q ss_pred CCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHH
Q 003746 522 GVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATW 598 (798)
Q Consensus 522 g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 598 (798)
.-|+.+ -|..+...=.+.|.+-.|..++++..-+ -+-+...|-..|.+=.|.|..+.|..+..++ ..+.+...|
T Consensus 714 -~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 714 -KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred -cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 234433 3333333344455555555555554322 1123455555555555555555555554444 222334445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..-|....+.++-.....++++ -..|+-....++.++....+++.|++.|.+....+.
T Consensus 791 aEaI~le~~~~rkTks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHhccCcccchHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4444444444443333333222 224556677788889999999999999998877553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=147.71 Aligned_cols=256 Identities=17% Similarity=0.213 Sum_probs=114.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcC
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 475 (798)
+...+.+.|++++|++++++.......|+...|-.+ ...+-..++.+.|.+.++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566777777777777554433223444444333 33444567777777777777766433 45556667766 6888
Q ss_pred CHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 476 CVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 476 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
++++|.+++...-+ ++...|..++..+...|+++++.++++++.... ..++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988876643 356678888899999999999999999987643 244556777888889999999999999999
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+++ ..|+ ....+.++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 987 4674 778889999999999999988888776 1234667889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.....+++++...|+.++|.++++...+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-11 Score=121.01 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=173.3
Q ss_pred ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 003746 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMF 515 (798)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 515 (798)
.|+.-.+.+-++.+++....++ ..|--+..+|....+.++-...|+.... .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888754433 2366677789999999999999987664 35678888888888889999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 516 SEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 516 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
++.++ +.|+.+ .|..+.-+..+.+.++++...|++.+++ ++.-+++|+.....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 566654 6777777778899999999999999885 4445899999999999999999999999987 4444
Q ss_pred C---------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 594 D---------VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+ +.+-.+++.. .-.+++..|+.+++++++++|.....|..|+.+-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2333333333 3449999999999999999999999999999999999999999999987653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=114.93 Aligned_cols=354 Identities=15% Similarity=0.091 Sum_probs=257.5
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHH-HHHHHHHH
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW-STMISGYA 402 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~li~~~~ 402 (798)
+...|....-...-.+.+.|....|+..|.+....-+..|.+-+....-..+.+.+..+....+..+...- --+..+|.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 44555555555556677788888888888775554455555555444445556666555555544322211 12344666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCC--CCcHHHHhHHHhhHHhcCC--HH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL--KINSILGTTLIDMYMKLGC--VD 478 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~--~~ 478 (798)
...+.+++++-.+.....|+.-+...-+....+.-+..++++|+.+|+.+.+... -.|..+|+.++ |.+..+ +.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH
Confidence 6678889999888888888766555555555555678899999999999998842 13566676665 444332 22
Q ss_pred H-HHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 479 N-ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 479 ~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
- |..++ .+.+--+.|.-.+..-|...++.++|+..|++..+ +.|... .|+.+..-|....+...|.+-++.+++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2 22222 23333456777778889999999999999999998 456654 677777889999999999999999976
Q ss_pred CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH
Q 003746 557 HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 557 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
+.| |-..|-.|+.+|.-.+...-|+-+|++. ..+| |...|.+|..+|.+-++.++|++.|.+++.....+...+.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 566 6888999999999999999999999998 5666 7899999999999999999999999999998877788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
.|+++|.+.++.++|...+++-.+.-.. . | ...|++.++...|.+-+.+++.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~--e----------------g-~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSEL--E----------------G-EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh--h----------------c-ccchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887652210 0 0 0135566677777777766653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=129.24 Aligned_cols=276 Identities=13% Similarity=0.070 Sum_probs=214.3
Q ss_pred CHHHHHHHHHhcCCC--CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 375 SVEKARALFDAMIEK--DV-VSWSTMISGYAQHDQFSETLSLFMEMQHHG-I-RPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
+..+|...|...+.. |. .....+..+|...+++++|.++|+...+.. . .-+..+|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467788888876543 32 334567778888899999999999887642 1 11456677776543221 112222
Q ss_pred -HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003746 450 -AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525 (798)
Q Consensus 450 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 525 (798)
..+++. -+..+.+|.++.++|.-.++.+.|++.|++..+-|. .+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 345788999999999999999999999999887654 5777777778888999999999998876 555
Q ss_pred CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 526 NEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 526 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
... .|..+...|.+.++++.|.-.|+++++ +.| +.....++...+-+.|+.|+|+++++++ ..+| |+..-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 677888899999999999999999965 777 4777788899999999999999999998 4444 55555556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..+...+++++|+..+|++.++.|++...+.+++.+|.+.|+.+.|+.-|.-+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 67777889999999999999999999999999999999999999999999887776544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-10 Score=110.23 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=159.5
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
.+.+...+.+-|.-.++.++|...|++..+-| ...|+.|..-|..-.+...|++-++...+-+ +.|...|-.+.++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 34566677788888899999999999877644 5689999999999999999999999999842 3456689999999
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 613 (798)
|.-.+...-|+-+|+++.+ ++| |...|.+|.+.|.+.+++++|.+.|.+. .-+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999865 677 6899999999999999999999999988 223356788999999999999999
Q ss_pred HHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 614 GERVGRKLVE-------LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 614 A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
|...+++-++ .+|+...+..-|+.-+.+.+++++|..+-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999886 345444455568888899999999987665443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-08 Score=102.51 Aligned_cols=474 Identities=13% Similarity=0.105 Sum_probs=307.6
Q ss_pred hcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC--Cc-hHHHHHHHHHhhcCCHHHHHHHH
Q 003746 178 VCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--NI-IASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~y~~~g~~~~A~~~f 251 (798)
..+++..|+.+|++.. .++...|---+..-.++..+..|..++++.... -+ ..|--.+.|=-..|++..|+++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3455666777776654 344556666666666777777777777665432 11 23444455555668888888888
Q ss_pred hcCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHh-CC-cc
Q 003746 252 KEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GI-EC 327 (798)
Q Consensus 252 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~-~~ 327 (798)
++-. +|+...|++.|.--.+-...+.|..+|++.+- +.|+..+|....+-=-+.|....+++++..+++. |- ..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 7643 57888888888888888888888888888776 4588888877777777778888888888887764 21 22
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCC-hhhHHHHHHHHHhcCC---HHHHHHH-----HHhcCCC---CH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDA----GHNLD-LISWNSMISGYLKCGS---VEKARAL-----FDAMIEK---DV 391 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~---~~~A~~~-----~~~m~~~---~~ 391 (798)
+..++++....=.++..++.|.-+|+- .++.. ...|..+..-=-+-|+ ++++.-- ++.+... |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 344555666666667777788777753 22221 2334444433334444 3444322 2233322 55
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hcccchhHHHHHHHHHHHcCCCCcH
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-------ATLVSVISAC---THLVALDQGKWIHAYIRKNGLKINS 461 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~ 461 (798)
.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+++++...++. ++-..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 67777777777788999999999988764 55521 1122221222 2457888888888888873 44445
Q ss_pred HHHhHHHhhHH----hcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 462 ILGTTLIDMYM----KLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 462 ~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
+++.-+=-+|+ ++.++..|.+++..... |...++..-|..-.+.++++.+..+|++.++-+ +-|-.+|.....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHH
Confidence 55555544553 67888899998877653 344566777777788889999999999998853 224457777776
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACK-----KHG 609 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~g 609 (798)
.-...|+.+.|..+|+-++....+.-....+.+.|+.=...|.++.|..+++++ ...+-..+|-++..--. +.+
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 667789999999999988775444444567777888888899999999999887 33445557776655433 233
Q ss_pred -----------ChhHHHHHHHHHHh----cCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 610 -----------DHEMGERVGRKLVE----LQPDHDGF--HVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 610 -----------~~~~A~~~~~~~~~----~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+...|..+|+++.. ..|..... +...-+.-...|.-.+...+-.+|.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 56678888888764 34432221 2223344455576667666666664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-11 Score=127.23 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=190.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC--CCCcHHHHhHHHhhHHhcCCHHH-HH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG--LKINSILGTTLIDMYMKLGCVDN-AL 481 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~-A~ 481 (798)
-+.++|+.+|.+.... +.-.......+..+|...+++++++.+|+.+.+.. ..-+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 33344677778889999999999999999998763 22356677766644332211111 12
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 482 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.+. .+....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ .
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 222 22234578999999999999999999999999988 567 44577777777777888999999998874 4
Q ss_pred CCcchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 561 PNSKHYGC---MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 561 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.+..+|++ |+-.|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|++++++++.++|.++-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 56667775 456789999999999999988 6667 566777788888899999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.++...+++++|...++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999998873
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-10 Score=122.73 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=137.5
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLV--SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 479 (798)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 33322211 11234444555555555555555443 2234455555555666666666
Q ss_pred HHHHHhhcCCCCcc-----------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 480 ALEVFHGTEEKGVS-----------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 480 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
|.+++..+.+.... +|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66555555433211 2222233333333444444555544332 23344566666777777777777777
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
.+++..+ ..|+.... ++......|+.+++.+.+++. ...| |...+..+...|...+++++|.+.|+++++..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7777654 23333211 222223447777777777766 3334 455667777788888888888888888888888
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 360 ~~~-~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAY-DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 45677778888888888887777553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-10 Score=113.46 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
++.....-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33333444455556677777777777766542 334444444445555666655555554555544 3445667777777
Q ss_pred hHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
-|.-.|+..+|++.|.+...-| -..|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 7778899999999999877655 358999999999999999999998887663 121222344555568888999999
Q ss_pred HHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 547 HRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMP--------MSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.++|.++. ++.| |+.+++-+.-+....+.+.+|..+|+..- .++ ...+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999885 5777 58888888888888999999999998761 112 45578999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+++++.+.|.++.++..++-+|...|+++.|.+.|.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-10 Score=110.13 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=108.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 482 (798)
.+|++++|.+.|++.....-.-....|+.-+ .+-..|++++|...|-.+... +..+..+...+.+.|.-..+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3456666666666655432211112222111 233455666665554433221 12244455555566666666666666
Q ss_pred HHhhcC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Q 003746 483 VFHGTE---EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559 (798)
Q Consensus 483 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 559 (798)
++.+.. ..|+....-|...|-+.|+-.+|.+.+-+--+. ++-|..|.--|...|....-+++++.+|++.. -+
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---li 655 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LI 655 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hc
Confidence 655433 235555666666666666666666554443332 23344455555555556666666777776653 25
Q ss_pred cCCcchHHHHHHH-HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 003746 560 EPNSKHYGCMVDL-LGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHG 609 (798)
Q Consensus 560 ~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 609 (798)
.|+..-|..|+.. +.|.|.+++|.++++.. .++.|......|+..|...|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 6666666666543 34567777777777666 34456666666666666555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-10 Score=119.53 Aligned_cols=278 Identities=12% Similarity=0.046 Sum_probs=128.6
Q ss_pred hCCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--HHHHHHHHHHHHhCCChHHHHHH
Q 003746 341 SCGEITTAEKLFDAGHN--LDL-ISWNSMISGYLKCGSVEKARALFDAMIE--KD--VVSWSTMISGYAQHDQFSETLSL 413 (798)
Q Consensus 341 ~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l 413 (798)
..|+++.|++.+.+..+ |++ ..+-.......+.|+.+.|...|.+..+ ++ ....-.....+.+.|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666654222 222 2223333445566777777776666422 11 22222335556667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH-------HhcCCHHHHHHHHhh
Q 003746 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY-------MKLGCVDNALEVFHG 486 (798)
Q Consensus 414 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~ 486 (798)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-...+ ......+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77776653 1234455566666667777777777777766665433222211111111 111222333344444
Q ss_pred cCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 487 TEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF---VGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 487 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.+. ++...+..++..+...|+.++|++++++..+. .||.... ..........++.+.+.+.+++..+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 443 24555666666666666666666666666653 3333210 111111122244444444444443321111
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIES--M-PMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112333444444444444444444442 1 23344444444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-10 Score=119.79 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=148.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHH
Q 003746 372 KCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 448 (798)
..|+.+.|...++.+.+ .++.....+...|.+.|++++|.+++.++.+.+..++. .+..+-
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------- 228 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------- 228 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------
Confidence 66666666666666543 25566677777777888888888888887776543221 111000
Q ss_pred HHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003746 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525 (798)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 525 (798)
...+..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .|
T Consensus 229 ------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 229 ------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 00111222222233345555666666653 35667777888888888888888888888773 44
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLG 603 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 603 (798)
|.. ..++.+....++.+++.+..+...++ .| |...+.++..++.+.|++++|.+.|++. ...|+...+..|..
T Consensus 295 ~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred CHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 442 11233334558888899888888764 34 4667888899999999999999999887 66788888888999
Q ss_pred HHHHcCChhHHHHHHHHHHhcC
Q 003746 604 ACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
.+.+.|+.++|.+.+++.+.+.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-08 Score=100.71 Aligned_cols=383 Identities=13% Similarity=0.122 Sum_probs=192.5
Q ss_pred HhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHH
Q 003746 238 FGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314 (798)
Q Consensus 238 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (798)
=-..+++..|+.+|++... +++..|---+..-.++.+...|..++++.+..=...|.. |-..+..=-.+|++..++
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHH
Confidence 3345677888888887764 466677777888888888888888888776522111221 111122222345555555
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh--cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 003746 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA--GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392 (798)
Q Consensus 315 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (798)
+++..-.+ ..|+...+++.|++=.+...++.|..++++ ..-|++.+|--...-=.++|++..|+.+|..
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer------- 232 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER------- 232 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence 55554442 345555555555555555555555555544 3334444444444444445555555544444
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcccchhHHHHHHHHHHHcCCCC-cHHHHhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC----THLVALDQGKWIHAYIRKNGLKI-NSILGTTL 467 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 467 (798)
..+. --|...-..++.++ .+...++.|.-++..++..-... ....|..+
T Consensus 233 ------------------------Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 233 ------------------------AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred ------------------------HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3321 01111111222222 22334455555555555432111 12233333
Q ss_pred HhhHHhcCCHHHHHHHH--------hhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------H
Q 003746 468 IDMYMKLGCVDNALEVF--------HGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-------T 529 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t 529 (798)
+..--+-|+........ +.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 33222333322222111 111112 3345555555555566666666666666653 444221 1
Q ss_pred HHHHHHHH---HhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003746 530 FVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL----GRAGMLKEAEELIESM-PMSPDVATWGA 600 (798)
Q Consensus 530 ~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 600 (798)
|.-+=-+| ....+++.+.++++..++ +-| ...++.-+--+| .|+.++..|.+++-.. +.-|-..++..
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 11111111 234566666666666654 333 344444333333 2556666666666554 55566666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.|..-.+.++++....++++.++..|.+..++...+..-...|+++.|..+|....+...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 666656666666666666666666666666666666665666666666666666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-09 Score=117.64 Aligned_cols=278 Identities=12% Similarity=0.055 Sum_probs=202.9
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccchhHHH
Q 003746 372 KCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA--TLVSVISACTHLVALDQGK 446 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~ 446 (798)
..|+++.|++.+....+. ....+-.....+.+.|+++.|.+.+.+..+. .|+.. ............|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 689999999999887543 2334445566778889999999999998764 35442 3333466778899999999
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcc---hHH----HHHHHHHHcCChHHHHHHHHHHH
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS---SWN----ALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~----~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
..++.+.+.. +-+..+...+...|.+.|++++|.+.+....+.++. .+. ....++...+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 446678889999999999999999999988865322 121 11122233334444455666666
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcch---HHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 520 KSGV---TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH---YGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 520 ~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 5421 126667888888999999999999999999874 354331 111222223457888888888776 334
Q ss_pred C-CH--HHHHHHHHHHHHcCChhHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 593 P-DV--ATWGALLGACKKHGDHEMGERVGR--KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 593 p-~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
| |+ ....++...|.+.|++++|.+.|+ .+++..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 34 677899999999999999999999 57788898765 6699999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-07 Score=96.49 Aligned_cols=468 Identities=13% Similarity=0.166 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhh
Q 003746 166 VYVNNTLINMYAVCGDLSAARKLFDESPV-----LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240 (798)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~ 240 (798)
+.+|-.-+....+.|++..-++.|++... .....|...+.-....|-++-++++|++..+-++...+-.|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44566666666677777777777765331 1223566666666666677777777777776666666666777777
Q ss_pred cCCHHHHHHHHhcCCCC----------------------------------------------Cc--ccHHHHHHHHHhc
Q 003746 241 KGNVAEACRLFKEMPKK----------------------------------------------DL--VSWSALISCYEQN 272 (798)
Q Consensus 241 ~g~~~~A~~~f~~~~~~----------------------------------------------~~--~~~~~li~~~~~~ 272 (798)
.+++++|.+.+..+... |. ..|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777776666555321 11 2477777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH----------------------HHHHHHhCC-----
Q 003746 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV----------------------HALAVKIGI----- 325 (798)
Q Consensus 273 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i----------------------~~~~~~~g~----- 325 (798)
|.+++|.++|++.+..- .+..-|..+.++|+.......+..+ ++.+.....
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 77777777777665532 2233344444444432211111111 111110000
Q ss_pred ------ccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003746 326 ------ECYINLQNALIHMYSSCGEITTAEKLFDA---GHNL------DLISWNSMISGYLKCGSVEKARALFDAMIEKD 390 (798)
Q Consensus 326 ------~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (798)
+.++..+..-+..| .|+..+-...|.+ ...| -...|..+.+.|-..|+++.|+.+|++...-+
T Consensus 340 VlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 00000111111110 1112222222211 0000 11234444445555555555555555443221
Q ss_pred -------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHH
Q 003746 391 -------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 391 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
..+|..-...=.++.+++.|+++.+.... .|.... +. +...+..-++ .+..+..+
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~-~yd~~~pvQ~----------rlhrSlki 479 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LE-YYDNSEPVQA----------RLHRSLKI 479 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hh-hhcCCCcHHH----------HHHHhHHH
Confidence 11233333333344444444444443322 111100 00 0000000000 01113455
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH-
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII---GFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACR- 538 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~- 538 (798)
|+..++.-..+|-++....+++++.+--+.|-..++. .+-.|.-++++.++|++-+..=--|+.. .|+..|.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 6666676677788888888888777655444443332 2335566777888777765543345543 3444443332
Q ss_pred --hcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCC
Q 003746 539 --HMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPD--VATWGALLGACKKHGD 610 (798)
Q Consensus 539 --~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~ 610 (798)
..-.++.|..+|++.++ |.+|. ...|-.....=.+.|....|+++++++ .+++. ...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23368888888888876 55554 222333333334567888888888887 33332 3456666654433333
Q ss_pred hhHHHHHHHHHHhcCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 003746 611 HEMGERVGRKLVELQPDHDGFHV--LLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...-..+|+++++.-|++..--. -.+.+-.+.|..+.|+.++..-.+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 45566788888887777544333 345666777888888888865543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=126.50 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=98.7
Q ss_pred hcCCHHHHHHHHHhc-C----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHH
Q 003746 372 KCGSVEKARALFDAM-I----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 446 (798)
+.|++++|.++++.. . ..|+..|..+.......+++++|++.++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 445555555555321 1 113334444444445555566666666655544321 23333333333 4555566665
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
++.....+.. ++...+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.+++..+
T Consensus 98 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~- 174 (280)
T PF13429_consen 98 KLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE- 174 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_pred cccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 5555443332 344445566667777777777777777643 23456777788888888888888888888888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 522 GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 522 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
..|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|...+++. ...| |+.+.
T Consensus 175 -~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 -LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp -H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred -cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 4665 446777888888889999888888888664 2456777788889999999999999999887 3234 67777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+..++...|+.++|.++.+++++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 8888899999999999998888764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-10 Score=110.85 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=165.1
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
.....+..+...|.+.|++++|.+.|++..+. +...+..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566777888999999999999999876643 45678888999999999999999999998853 234456777888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 613 (798)
.+...|++++|.+.++++.+..........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999763222223567778899999999999999999887 3334 46788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-07 Score=102.84 Aligned_cols=528 Identities=13% Similarity=0.068 Sum_probs=305.0
Q ss_pred CCCCCChHHHHHHHhh-ccC--hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHH
Q 003746 24 FKPTINLSILETHLQK-CQS--FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100 (798)
Q Consensus 24 ~~~~~~~~~~~~~l~~-~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~ 100 (798)
.+..|+.-+|.+++.+ |.. .+.+. ++..|.-..+.-+..+++.++. ... ..++.+.+. .|...+|+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~--sh~-~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVA--SHK-EANDAENPK-------EPLADTYT 87 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHh--ccc-ccccccCCC-------CCchhHHH
Confidence 3456777788887654 543 44444 8998888887778888899998 766 777777665 58888999
Q ss_pred HHHHHHHcCCCchHHHHHHHH-HHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh
Q 003746 101 TMMRAYIQRNVPQQAICLYKL-MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL-KAGFDSDVYVNNTLINMYAV 178 (798)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~ 178 (798)
.+..+|.++|+... ++..++ |. .+...+...|.......++-.+. ..++-||. ..++....-
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~ 151 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVL 151 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHH
Confidence 99999999999866 333333 21 12223333333322222222111 11222333 334445556
Q ss_pred cCChHHHHHHHccCCCC--CcchHHHHHHHHHh-CCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCHHHHHHHHhcC
Q 003746 179 CGDLSAARKLFDESPVL--DLVSWNSILAGYVN-ADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKEM 254 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 254 (798)
.|.++.+++++..+|.. +. ..-.++.-... ...+++-...-+...+ +++.++.+++..-...|+++.|..++.+|
T Consensus 152 eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 67778888888777721 11 11112333332 2334444444444554 78999999999999999999999999999
Q ss_pred CCCC----cc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc-
Q 003746 255 PKKD----LV-SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY- 328 (798)
Q Consensus 255 ~~~~----~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~- 328 (798)
.++. .. -|-.+.. .++...+..+++-|.+.|+.|+..|+.-.+..+...|....+.. |.+.+
T Consensus 231 ke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~h 298 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAH 298 (1088)
T ss_pred HHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhh
Confidence 8752 22 3444443 78888899999999999999999999988888877544322211 11111
Q ss_pred ---hhHHHHHHHHHHhCCCHHH-----HHHHHH----hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-------
Q 003746 329 ---INLQNALIHMYSSCGEITT-----AEKLFD----AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK------- 389 (798)
Q Consensus 329 ---~~~~~~li~~y~~~g~~~~-----A~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 389 (798)
..++.++++......+++. ....+. .+.......|...+... .+|.-++...+-..+..+
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcc
Confidence 1122222222111111111 111111 13333334444433322 356656666665555432
Q ss_pred CHHHHHHHHHHHHhC----------------------CChHHHHHHHHHHHHcCCCCCHH--------------------
Q 003746 390 DVVSWSTMISGYAQH----------------------DQFSETLSLFMEMQHHGIRPDEA-------------------- 427 (798)
Q Consensus 390 ~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~m~~~g~~pd~~-------------------- 427 (798)
++..+..++.-|.+. ....+..++.... .||..
T Consensus 378 ~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 378 NVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccch
Confidence 333343333333221 1111111111111 22211
Q ss_pred --------HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc------c
Q 003746 428 --------TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV------S 493 (798)
Q Consensus 428 --------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~ 493 (798)
.-..++..|++.-+..++...-+.....-+ ...|..||+......+.+.|..+.++...+|. .
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 112223333333333333322222222111 25688999999999999999999999887764 3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
-+..+.....+++....+..++++|.+.-. .|+ ..++--++..-...|+.+.-.+.++-+.. +|+.-+ .-++.
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~ 604 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWM 604 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceE
Confidence 578888999999999999999999987432 232 34677777888888888888887776643 455332 33445
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 003746 572 LLGRAGMLKEAEELIESM--PMSPDVATWGALLGAC 605 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 605 (798)
...+.++...|.+.++.. ..+|.+.....+...+
T Consensus 605 vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv 640 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLV 640 (1088)
T ss_pred EEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHH
Confidence 566778887777776554 2344444444444333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-07 Score=97.89 Aligned_cols=514 Identities=12% Similarity=0.104 Sum_probs=230.1
Q ss_pred CCCChhHHHHhhhcC----CC-CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHH
Q 003746 77 PFIEMSYSFKIFAFL----ES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~ 151 (798)
+.|++..-++.|+.. |. .....|...+.-.-..|-++-++.+|++-++.. | ..-.--+.-++..++.++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHH
Confidence 556666666666643 21 233456666666666666667777777666322 2 22333444555666666666
Q ss_pred HHHHHHHHhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHccCCC--CCc--chHHHHHHHHHhCCCHHHHHH
Q 003746 152 LIHDHVLKAG------FDSDVYVNNTLINMYAVCGDLS---AARKLFDESPV--LDL--VSWNSILAGYVNADNVEEAKF 218 (798)
Q Consensus 152 ~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~--~d~--~~~~~li~~~~~~g~~~~A~~ 218 (798)
+.+..++... -+.+-..|..+-+..++.-+.- ....++..+.. +|. ..|++|..-|.+.|.++.|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666554221 1445555555555555543321 22233333332 232 356777777777777777777
Q ss_pred HHhhCCCC--CchHHHHHHHHHhhcC----------------------CHHHHHHHHhcCCCC---------------Cc
Q 003746 219 IYNKMPER--NIIASNSMIVLFGRKG----------------------NVAEACRLFKEMPKK---------------DL 259 (798)
Q Consensus 219 ~~~~m~~~--~~~~~~~li~~y~~~g----------------------~~~~A~~~f~~~~~~---------------~~ 259 (798)
+|++.... .+.-++.+-+.|+... +++-...-|+.+..+ |+
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 77665442 2222223333332211 111122222222110 12
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------chhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc---hh
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD------EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY---IN 330 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~ 330 (798)
..|..-.. ...|+..+-...|.+.... +.|- ...|..+.+-|-..|+++.|+.++....+..++.- ..
T Consensus 350 ~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 350 EEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 22222221 2234445555555554432 1111 11233344444455555555555555555433221 33
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHh
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAG-HNLDLISWNSMISGYLKCGSVEKARALFDAMI------EKDVVSWSTMISGYAQ 403 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~ 403 (798)
+|..-.++=.+..+++.|.++.+.. .-|.... +..|+.+. .++...|...++.--.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----------------~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----------------LEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----------------hhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444555555555555431 0000000 00000000 0022234444444444
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH-HHHhHHHhhHHh---cCCHHH
Q 003746 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMK---LGCVDN 479 (798)
Q Consensus 404 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~ 479 (798)
.|-++....+|+++.+..+.......+.. --+-...-++++.++++.-+..--.|++ .+|+.-+.-+.+ ..+++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyA-mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYA-MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44444444555554443322111111110 0111222334444444433322111211 223333222222 123555
Q ss_pred HHHHHhhcCCCC-c---ch-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 480 ALEVFHGTEEKG-V---SS-WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 480 A~~~~~~~~~~~-~---~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
|+.+|++..+.= . .+ |-.-...--.+|....|+.++++.... +++... .|+..|.--...=-+.....+|++
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 555555443310 0 00 111111112356666777777775543 444432 456555433333334556677777
Q ss_pred HHHhCCCcCCc---chHHHHHHHHHhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 553 MIQEHRLEPNS---KHYGCMVDLLGRAGMLKEAEELIESMP--MSP--DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 553 ~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.++. -|+. ...--..++=.+.|..+.|..++.-.. .+| +...|.+-=.--.+|||-+ .+++|+.
T Consensus 648 aIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned----T~keMLR 718 (835)
T KOG2047|consen 648 AIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED----TYKEMLR 718 (835)
T ss_pred HHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH----HHHHHHH
Confidence 7763 3442 233344566678899999998887651 223 5667888777778899844 4444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-09 Score=110.03 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHc-----CC-CCcH-HHHhHHHhhHHhcCCHHHHHHHHhhcCC-------CC-
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKN-----GL-KINS-ILGTTLIDMYMKLGCVDNALEVFHGTEE-------KG- 491 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 491 (798)
.|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666677777777777777666543 21 1222 2233466677888888888877776542 11
Q ss_pred ---cchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--C
Q 003746 492 ---VSSWNALIIGFAMNGLADKSLEMFSEMKK-----SGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHR--L 559 (798)
Q Consensus 492 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 559 (798)
..+++.|...|...|++++|...+++..+ .|..+..+ -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34677788888888888887777766543 23333322 466777889999999999999998876543 2
Q ss_pred cCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh--
Q 003746 560 EPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-- 623 (798)
Q Consensus 560 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 623 (798)
.++ ..+|+.|..+|...|++++|+++++++ +..+. ...++.|...|.+.++++.|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999887 11222 45678899999999999999999988865
Q ss_pred --cCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 624 --LQPDH---DGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 624 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
..|+. ...|..|+.+|...|++|+|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35554 4567789999999999999999988875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-07 Score=102.04 Aligned_cols=416 Identities=13% Similarity=0.103 Sum_probs=236.6
Q ss_pred CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhH-HHHHH
Q 003746 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV-VSVLS 302 (798)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 302 (798)
+..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.++++-....-.|+..+. ...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 444455555666667777777777766543 24457888888888888888888888776554434544333 33333
Q ss_pred HHh-ccCchHHHHHHHHHHHHh--CC--ccchhHHHHHHHHHHhC----CC-------HHHHHHHHHhcC---CCChhhH
Q 003746 303 ACA-NLTVVKAGTSVHALAVKI--GI--ECYINLQNALIHMYSSC----GE-------ITTAEKLFDAGH---NLDLISW 363 (798)
Q Consensus 303 a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~----g~-------~~~A~~~~~~~~---~~~~~~~ 363 (798)
.|. +.+..++|...-..++.. +. ......+-.+.-.|... .. ..++.+.+++.. ..|+...
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 343 446666666655555552 11 11223333333334321 11 223344444421 2222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 364 NSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
--+---|+-.++++.|.....+.. ..+...|.-+.-.+...+++.+|+.+.+..... ..-|..-...-+..-...
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhc
Confidence 222233555566666666655542 335667777777777777777777777655443 111111111122222234
Q ss_pred cchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC---C--CC-cchHHHHHHHHHHcCChHHHH
Q 003746 440 VALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTE---E--KG-VSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~-~~~~~~li~~~~~~g~~~~A~ 512 (798)
++.+++......+...= -.+. ....|+-....+.+..+. . .| +.++..+..-.... .+.+.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~ 628 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAG 628 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcc
Confidence 55555544444433210 0000 001111122222222221 0 11 22232222222111 11110
Q ss_pred HHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHH
Q 003746 513 EMFSEMKKSGVTPNEI--------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 513 ~l~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
.-.. |...-+.|+.. .|......+.+.+..++|...+.+..+ +.| ....|......+...|.++||.
T Consensus 629 se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 0000 22222223221 244555677888999999988888743 455 4777888888999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 584 ELIESM-PMSPD-VATWGALLGACKKHGDHEMGER--VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 584 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++...|+.++|.+.|....+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 998877 66775 6688999999999999999988 9999999999999999999999999999999999999887643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-09 Score=98.56 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=180.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCC--cHHHHhHHHhhHHhcCCHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKI--NSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 479 (798)
-.++.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|+++|..+.++. ... -....-.|..-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467888888888887742 2223344566677788889999999998888762 221 12344556777899999999
Q ss_pred HHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 480 ALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 480 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
|+.+|..+.+.+. .....|+..|-+..+|++|++.-+++...+-.+..+ .|.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887543 466778999999999999999999999877666654 466677777778899999999998
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..+ ..|+ +..--.+.+.+...|+++.|.+.++.. ...|+ ..+...|..+|...|+.+++...+.++.+..|+.
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 876 3454 455556788999999999999999888 44455 3467888999999999999999999999888776
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHH
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
... ..+...-....-.++|..+..
T Consensus 283 ~~~-l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 283 DAE-LMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred cHH-HHHHHHHHHhhChHHHHHHHH
Confidence 433 334444333333444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-08 Score=97.56 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=167.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHH
Q 003746 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 400 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 479 (798)
-+.-.|+...|..-|+........++.. |.-+...+....+.++....|..+.+.+. .++.+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 3455688888888888888764433332 66666778888888999999998888753 356677777778888899999
Q ss_pred HHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 480 ALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 480 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
|..-|++...-+ +..|--+..+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 999999877643 556777777777888999999999999885 333345888888999999999999999999875
Q ss_pred CCCcCCc---------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 557 HRLEPNS---------KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 557 ~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
++|+. .+--.++-.- =.+++..|.+++.+. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55541 1111222111 238899999999988 5666 46689999999999999999999999987654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-06 Score=91.60 Aligned_cols=379 Identities=15% Similarity=0.163 Sum_probs=226.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhc--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 233 SMIVLFGRKGNVAEACRLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
+-|..|.|.|....|.+.-.. ....|......+..++.+..-+++|=++|+++.. +...+..+.+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 456778888877777665432 1223444455555566666666666666666543 22222223222223
Q ss_pred HHHHHHHHHHHHhCCccchh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003746 311 KAGTSVHALAVKIGIECYIN-LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389 (798)
Q Consensus 311 ~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (798)
..|.++-... ++..++ .-.+-.+-+...|+++.|...|-+.. ....-|.+.....++.+|..+++.+..+
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 3333332221 122111 11233344445566666655553211 1112233444667788888888888776
Q ss_pred CHHH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH
Q 003746 390 DVVS--WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467 (798)
Q Consensus 390 ~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 467 (798)
++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-... .|.+.....|-+-
T Consensus 762 k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAK 830 (1636)
T ss_pred ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHh
Confidence 6554 6667778888888888888886431 2344566777888888776665443 3445556666666
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 545 (798)
..-.-+.|++.+|.+++-.+..|+. -|..|-++|..+..+++.++- .|+. .|-..+..-+...|++..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhH
Confidence 6667778888888888877766663 467788888888888877653 3333 366667777888899999
Q ss_pred HHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC---C-CHHHHHH------HHHHHHHcCChhHHH
Q 003746 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS---P-DVATWGA------LLGACKKHGDHEMGE 615 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~------l~~~~~~~g~~~~A~ 615 (798)
|...|-+.- -|.+-+++|...+.+++|.++-+.-+-. . -...|.. -+..+.++|-.+.|+
T Consensus 901 ae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 901 AEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 988876552 2567788999999999999887765311 0 1122321 222334555544444
Q ss_pred HHH------HHHHh-----cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 616 RVG------RKLVE-----LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 616 ~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
... +-+++ .....+..+..++..+...|++++|-+.+-...+.+.
T Consensus 971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 332 11111 2233456778888888999999999888877665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=87.14 Aligned_cols=50 Identities=26% Similarity=0.474 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 143 (798)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-08 Score=92.88 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=111.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (798)
+.-+..+.++..|+.+++.-...+-+-. ..... +..++-..|++++|..++..+.+.. .++..++-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4455667777788777776553332211 12222 2333456788888888888777654 5666677777777777788
Q ss_pred hHHHHHHHccCCCCCcchHHHHH-HHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--CC
Q 003746 182 LSAARKLFDESPVLDLVSWNSIL-AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK--KD 258 (798)
Q Consensus 182 ~~~A~~~f~~~~~~d~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~ 258 (798)
+.+|..+-...+ +....+-++ ..--+.|+-++-+.+-..+. ....-.-+|.++..-.-.+++|..++.++.. |+
T Consensus 107 Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 107 YIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 888887766544 222233333 33344555444444333332 2233344555555555667888888877654 34
Q ss_pred cccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHh
Q 003746 259 LVSWSAL-ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305 (798)
Q Consensus 259 ~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 305 (798)
-...|.- .-+|.+..-++-+.+++.--.+. -|| .|+..=+.+|.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd-StiA~NLkacn 228 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD-STIAKNLKACN 228 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC-cHHHHHHHHHH
Confidence 4455543 34666777777777777665542 233 34444444543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=98.28 Aligned_cols=306 Identities=12% Similarity=0.128 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhcCCC-C------HHHHHHHHHHHHhCCChHHHH
Q 003746 342 CGEITTAEKLFDAGHNLDLISW---NSMISGYLKCGSVEKARALFDAMIEK-D------VVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~~A~ 411 (798)
..+.++|.++|-.+.+.|+.|+ -+|.+.|.+.|.+|.|.++-+.+.++ | ....-.|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556666666665555554443 34555566666666666666555432 2 122334455566666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 491 (798)
++|..+.+.|. .-......++..|-...++++|..+-+.+.+.+-.+...- +..
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQ---------------------- 181 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHH----------------------
Confidence 66666555431 1223344455555555555555555555554432221100 000
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV-GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
.|--+...+....+.+.|..++.+..+. .|+.+--+ .+.......|+++.|.+.++.+.+. +..--..+...|.
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 1222233333344445555555554442 23322211 2223444455555555555555432 1111134444555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChhH
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH--ASKGRWDD 647 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~ 647 (798)
.+|...|+.++...++.++ ...+....-..+..--....-.+.|...+.+-+...|+--.+|-++..-. +..|++.+
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhh
Confidence 5555555555555555444 22233333333333333333345555555555566666555444443222 23466888
Q ss_pred HHHHHHHHHhCCCccCCccceEEECCEEEEE
Q 003746 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678 (798)
Q Consensus 648 a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~ 678 (798)
..-.++.|....++..|.+.....+-..|+|
T Consensus 337 sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 337 SLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8888888887777766766554444444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-07 Score=94.14 Aligned_cols=257 Identities=15% Similarity=0.096 Sum_probs=158.7
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHH
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHN---LDLISWNSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTM 397 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~l 397 (798)
+...++.+.....+-+-..+++.+..++++...+ +....+..-|.++...|+..+-..+=.++.+. ..++|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 3455666677777777788888888888876443 33445555566777777766655555555432 56788888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHc--C-CCCcHHHHhHHHhhHHh
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKN--G-LKINSILGTTLIDMYMK 473 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~ 473 (798)
..-|..-|+..+|.+.|.+...- .|. ...|.....+++..+.-++|...+..+-+. | ..|. .| +.--|.+
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~ 392 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMR 392 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHH
Confidence 88888888888888888776542 222 345667777788888888888777766654 2 2222 22 3334777
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCcHH
Q 003746 474 LGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS--GVTP----NEITFVGVLGACRHMGLVD 544 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~ 544 (798)
.++++-|.+.|..... .|+...+-+.......+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+..+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8888889888887553 46777888877777788888999888876621 0000 1223444445555555555
Q ss_pred HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 545 EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+|+..+++.+. ..| +..++.++.-.|...|.++.|.+.|.+.
T Consensus 473 eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 473 EAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555443 222 3444444444444444444444444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-07 Score=97.85 Aligned_cols=439 Identities=14% Similarity=0.115 Sum_probs=233.2
Q ss_pred HHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHH--HHHHH--hhcCCHH
Q 003746 173 INMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS--MIVLF--GRKGNVA 245 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--li~~y--~~~g~~~ 245 (798)
++.+.+.|++++|.+..+.+. +.|...+..-+-++++.+++++|+.+.+.-.... +++. +=.+| .+.++.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHH
Confidence 344555556666655555443 2233445555555666666666665544332211 1111 12233 3567788
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHhccCchHHHHHHHH-HHHHh
Q 003746 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVVSVLSACANLTVVKAGTSVHA-LAVKI 323 (798)
Q Consensus 246 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~-~~~~~ 323 (798)
+|...++...+.+..+...=...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+ ..-. .+...
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~q~v 167 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLLQSV 167 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHHHhc
Confidence 88877775544454455555677788888888888888887655322111 1111111111 1111 11111
Q ss_pred CCcc--chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHh-cCCC-----CHH---
Q 003746 324 GIEC--YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA-MIEK-----DVV--- 392 (798)
Q Consensus 324 g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~-----~~~--- 392 (798)
...| +-..+-.....+...|++.+|+++++... ++-.+ +.+. +..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhhHHHHH
Confidence 1111 11111122334455566666655554310 00000 0000 010
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHhcccchhH--HHHHHH-----------HHHH
Q 003746 393 --SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV---ISACTHLVALDQ--GKWIHA-----------YIRK 454 (798)
Q Consensus 393 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~--a~~~~~-----------~~~~ 454 (798)
.--.|.-.+...|+-++|..+|...++.. .+|....... |.+...-.++-. ....++ ....
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 11224445666788888888777777654 3343222211 112222111111 011110 0111
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALIIGFA--MNGLADKSLEMFSEMKKSGVTPNE--IT 529 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t 529 (798)
..-......-++++.+|. +..+.+.++-...+..- ...+.+++.... +.....+|.+++...-+. .|.. +.
T Consensus 303 ~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v 378 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHH
Confidence 111112233355666665 44567777777766543 334444444332 223577888888877764 4444 34
Q ss_pred HHHHHHHHHhcCcHHHHHHHHH--------HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC
Q 003746 530 FVGVLGACRHMGLVDEGHRHFN--------SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--------PMSP 593 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p 593 (798)
....+......|+++.|.+++. .+.+ .+. .+.+..+++.+|.+.++-+-|.+++++. ..++
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 5555566778999999999998 4432 233 3455667889999998877777777665 2222
Q ss_pred C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 594 D-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 594 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
. ..+|.-+...-.++|+-++|...++++++.+|++....+.+..+|+.. +.+.|..+-+.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 234444555556789999999999999999999999999998888765 466666665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-08 Score=95.53 Aligned_cols=274 Identities=15% Similarity=0.117 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCChHHHHHHH
Q 003746 342 CGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSWSTMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 342 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 414 (798)
.|++..|+++..+.- +.....|..-..+--+.|+.+.+-..+.+..+. +....-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 366666666665422 222233444444555666666666666665433 2334445555566666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH-------HHHhHHHhhHHhcCCHHHHHHHHhhc
Q 003746 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-------ILGTTLIDMYMKLGCVDNALEVFHGT 487 (798)
Q Consensus 415 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 487 (798)
.++...+. -+.........+|.+.|++.....+...+.+.|.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66655432 23344555556666666666666666666666554333 22333333333333333333344444
Q ss_pred CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc
Q 003746 488 EE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564 (798)
Q Consensus 488 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 564 (798)
+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.+.+-++...-.+..++..+..+-.| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 42 2344444555555556666666666655555554444 1122233444444444444444444333222 4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
.+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555555555544 444555555555555555555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-11 Score=84.51 Aligned_cols=50 Identities=42% Similarity=0.731 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003746 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438 (798)
Q Consensus 389 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 438 (798)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-07 Score=92.77 Aligned_cols=280 Identities=13% Similarity=0.134 Sum_probs=190.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHH
Q 003746 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351 (798)
Q Consensus 272 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 351 (798)
.|+|.+|.++..+-.+.+-.|- ..|.....+....|+.+.+-..+..+.+..-.+...+.-+......
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----------- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----------- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----------
Confidence 4777777777777666554332 2344444455556666666666666655433444445555555555
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDA---MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-- 426 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-- 426 (798)
..|+.+.|+.-.++ |..+++.........|.+.|++.+...++.+|.+.|+--|.
T Consensus 165 --------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 165 --------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 56666666555444 34556777777888888888888888888888887755443
Q ss_pred -----HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003746 427 -----ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501 (798)
Q Consensus 427 -----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 501 (798)
.++..+++-+...+..+.-+..++..-+. ...++.+..+++.-+.+||+.++|.++..+..++.-.---...-.
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh
Confidence 45666776666666666655566555433 344566667788889999999999998887765421111223334
Q ss_pred HHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
+.+-++.+.-++..++-... +..| -.+.+|...|.+.+.+.+|..+|+..++ ..|+..+|+.+.+.|.+.|+.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChH
Confidence 55677777777777766553 3333 5677888889999999999999998764 6899999999999999999999
Q ss_pred HHHHHHHhC
Q 003746 581 EAEELIESM 589 (798)
Q Consensus 581 ~A~~~~~~~ 589 (798)
+|.+..++.
T Consensus 379 ~A~~~r~e~ 387 (400)
T COG3071 379 EAEQVRREA 387 (400)
T ss_pred HHHHHHHHH
Confidence 999998875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-07 Score=93.64 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=252.8
Q ss_pred HHHHHHHHhcCChHHHHHHHcc--CCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCch------------------
Q 003746 170 NTLINMYAVCGDLSAARKLFDE--SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII------------------ 229 (798)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~f~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 229 (798)
-+-|..|.+.|....|.+.-.. ....|......+..++.+..-++.|=++|+++..++-.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 4557788888888777665432 22334444444444444444444444444444332110
Q ss_pred ---------HHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHH
Q 003746 230 ---------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300 (798)
Q Consensus 230 ---------~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 300 (798)
.-..-..-+...|+++.|..-|-+.. ..---|.+......+.+|+.+++.++... .-...|..+
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~i 771 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEI 771 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHH
Confidence 00111122223344444444332211 11122345566778888888888877643 234467788
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEK 378 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 378 (798)
...|+..|+++.|.+++-.. ..++.-|+||.+.|++++|.++-.+-. +.....|.+-..-+-+.|++.+
T Consensus 772 adhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 89999999999999887553 245778999999999999999998844 4455667777778889999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC
Q 003746 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458 (798)
Q Consensus 379 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 458 (798)
|+++|-.+..|+. -|..|-+.|..++.+++..+-....+ ..|-..+..-+-..|++..|..-|-..-
T Consensus 843 aeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~----- 909 (1636)
T KOG3616|consen 843 AEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG----- 909 (1636)
T ss_pred hhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh-----
Confidence 9999998888874 47788999999999988876432211 2344445556667888888877664432
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-----cchHHHH------HHHHHHcCChHHHHHH-------------
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-----VSSWNAL------IIGFAMNGLADKSLEM------------- 514 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l------i~~~~~~g~~~~A~~l------------- 514 (798)
-+.+-++||-..+-+++|.++-+.--..| ...|.-- +..+-++|..++|+..
T Consensus 910 ----d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdl 985 (1636)
T KOG3616|consen 910 ----DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL 985 (1636)
T ss_pred ----hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH
Confidence 25678889999999999998876443333 1233322 2233455555554432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--C-----cCCcchH---------HHHHHHHHhcCC
Q 003746 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR--L-----EPNSKHY---------GCMVDLLGRAGM 578 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~-----~p~~~~~---------~~l~~~~~~~g~ 578 (798)
-+-..+. -.|. .-..+..-+...|.+++|.+.+-+.++-.. + .|+..-. ..-+.++.+..+
T Consensus 986 ari~~k~-k~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dnd 1062 (1636)
T KOG3616|consen 986 ARIAAKD-KMGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDND 1062 (1636)
T ss_pred HHHhhhc-cCcc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhccc
Confidence 2211111 1111 122233345677899999887777654211 1 0110000 012334444444
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 579 LKEAEELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
+..|.++-+.- .|| +.++..-..+....|++..|+.++-++ ..|+- ..+-|...+.|.+|+++-+
T Consensus 1063 wa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~i------~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1063 WAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPDI------ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhhhheeec--CCCch------HHHHHHHhccChHHHHHHH
Confidence 44444444332 122 123333334444556666665543222 23432 2245677888888887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-06 Score=85.47 Aligned_cols=280 Identities=11% Similarity=0.070 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHH
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 468 (798)
|+.....+...+...|+..+|+..|++.+.. .|+..+-.-+ .-.+...|+.+....+...+.... +.+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 6677778888888888888888888877653 3443321111 111235566666666555554321 11112222222
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
.......+++.|+.+-++..+-| +..+-.-...+.+.|+.++|.-.|+..+. +.|. -..|..|+..|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 23334567788887777665443 44444445677888999999999999887 4554 458999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCcchHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 545 EGHRHFNSMIQEHRLEPNSKHYGCMV-DLLG-RAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
||.-.-+...+. +..+..+.+.+. +.+. ....-++|.+++++. .+.|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 998887777653 333455555442 3222 233457899999887 67787 44677788889999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHH
Q 003746 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700 (798)
Q Consensus 621 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 700 (798)
.+...||+ ..+..|++++...+.+.+|.+.|...... .|+.+....-++.+++
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHh
Confidence 99999986 67899999999999999999999877653 3555666666777777
Q ss_pred HHH
Q 003746 701 KLK 703 (798)
Q Consensus 701 ~~~ 703 (798)
.++
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-06 Score=89.94 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
...|..+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-.+++..+.++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 347999999999999999999887543 35668999999999999999999999877554 4556554 56999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
+|++.+++.|-++++.. |+..-...+..-|...|.++.|.-+|... +.|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887753 78878888899999999999888777654 4577777788888888888776
Q ss_pred HHHHHhCCCccCCc
Q 003746 652 RGMMVRRGVVKIPG 665 (798)
Q Consensus 652 ~~~m~~~~~~~~~~ 665 (798)
-++......+|...
T Consensus 1243 aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVC 1256 (1666)
T ss_pred hhhccchhHHHHHH
Confidence 66665544444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=103.08 Aligned_cols=212 Identities=17% Similarity=0.063 Sum_probs=152.6
Q ss_pred cchhHHHHHHHHHHHcC-CCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHH
Q 003746 440 VALDQGKWIHAYIRKNG-LKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLE 513 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 513 (798)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+. +...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455566666666432 222 2456777788899999999999999887643 46789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 003746 514 MFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--P 590 (798)
Q Consensus 514 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 590 (798)
.|++..+ +.|+. .++..+..++...|++++|.+.|++..+ ..|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 56764 4777788888999999999999999976 4565332222233445678899999999665 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLV-------ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 591 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..|+...| .......|+...+ +.++.+. ++.|+.+..|..++.+|...|++++|...|++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23333222 2233345665544 2444443 45667778899999999999999999999999887554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=93.59 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL 572 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 572 (798)
...|.-+|.+.|+...|.+-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++.++ +.|+ ..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 45577789999999999999999998 467655 888899999999999999999999975 6774 8899999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 573 LGRAGMLKEAEELIESMPMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
+|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++++|+.+.....+.......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999983333 3568999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003746 649 LEVRGMMVRRGV 660 (798)
Q Consensus 649 ~~~~~~m~~~~~ 660 (798)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=87.18 Aligned_cols=306 Identities=13% Similarity=0.088 Sum_probs=184.8
Q ss_pred CCCCCchhHHHHHHHHhcc--CchHHHHHHHHHHHHh-CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 003746 289 RVMVDEVVVVSVLSACANL--TVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365 (798)
Q Consensus 289 g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 365 (798)
.+.|...+....+.+++.. ++-..+.+.+..+.+. -++.++....++.+.|...|+.++|+..|++....|+.+..+
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 3445555555555554432 3333333333333332 456778888888888887777777777777654444433322
Q ss_pred H---HHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 366 M---ISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 366 l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
| .-.+.+.|+.++..++.+.+... ....|-.-....-...+++.|+.+-++..+. .|+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r-------------- 332 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPR-------------- 332 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--Ccc--------------
Confidence 2 12233555555555554444322 1223333333333444555555555444332 111
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFS 516 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 516 (798)
+...+-.-..++...|+.++|.-.|+.... -+..+|.-|+..|...|+..+|.-+-+
T Consensus 333 --------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 333 --------------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred --------------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 111111112334455666666666665432 356677777777777777777766665
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 517 EMKKSGVTPNEITFVGVL-GACR-HMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 517 ~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
...+. +..+..+...+. ..|. ...--++|.+++++..+ +.|+ ....+.+..++.+.|+.+++..++++. ...
T Consensus 393 ~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 393 WTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 54442 222333444332 2332 22235789999988754 7787 667788899999999999999999987 567
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
||....+.|...++..+.+.+|...|..++.++|++..+.-.
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 899999999999999999999999999999999998654433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-08 Score=110.71 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 407 FSETLSLFMEMQHHGIRPDEA-TLVSVISACT---------HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777776653 44432 3333322222 2244678888888887765 3356677778888889999
Q ss_pred HHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 477 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
+++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999987653 3457888899999999999999999999984 56543 333444556678999999999999
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CC
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL---QP 626 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p 626 (798)
+.+. ..|+ ...+..+...|...|++++|.+.++++ +..|+ ...++.+...+...| +.|...++++++. .|
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8763 2354 556778889999999999999999987 44454 445566666777777 4788878877753 44
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.++. .+..+|+-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 366788888999888877 6666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-06 Score=87.29 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=140.9
Q ss_pred chhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhC-C-------CCCCcc
Q 003746 61 DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-N-------VGVDNY 132 (798)
Q Consensus 61 ~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------~~~~~~ 132 (798)
|..+-..+++|-.|. ..|+.+.|.+-...+. +-..|..|.+.+.+..+.+-|.-.+..|... | .+-+..
T Consensus 725 d~~TRkaml~FSfyv-tiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV-TIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred CHHHHHhhhceeEEE-EeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 677888888887899 9999999988777664 4567999999999999998888877777532 1 111213
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc-chHHHHHHHHHhCC
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL-VSWNSILAGYVNAD 211 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g 211 (798)
+=..+.-.....|-+++|+.++.+-.+.+ .|-..|-..|.+++|.++-+.-.+-.. .||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333333456788888988888876643 455678888999999888764322111 25555566666678
Q ss_pred CHHHHHHHHhhCCCC-----------------------CchHHHHHHHHHhhcCCHHHHHHHHhcCCC------------
Q 003746 212 NVEEAKFIYNKMPER-----------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPK------------ 256 (798)
Q Consensus 212 ~~~~A~~~~~~m~~~-----------------------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------ 256 (798)
+.+.|++.|++...+ |...|.--....-..|+++.|..++.....
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG 952 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence 888888888775432 333344334444456777777776665431
Q ss_pred ------------CCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 257 ------------KDLVSWSALISCYEQNEMYEEALVLFMNMI 286 (798)
Q Consensus 257 ------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 286 (798)
.|......+.+-|-..|++.+|...|.+.+
T Consensus 953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244445556666666666666666666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-06 Score=89.95 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=111.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHH
Q 003746 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV---LDLVSWNSILAGYVNADNVEEAK 217 (798)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 217 (798)
|-..+++..+.+..+.+++ +++....+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3456677778888887777 4455556655555566777899999888876554 45578998888888888999999
Q ss_pred HHHhhCCC---CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 003746 218 FIYNKMPE---RNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV- 290 (798)
Q Consensus 218 ~~~~~m~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 290 (798)
+.|+.... .|...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..++++..+...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988764 4566666666666666776665555444332 3567899999999999999999999988876542
Q ss_pred CCCchhH
Q 003746 291 MVDEVVV 297 (798)
Q Consensus 291 ~p~~~t~ 297 (798)
.|+...+
T Consensus 176 ~~s~~~~ 182 (700)
T KOG1156|consen 176 SPSKEDY 182 (700)
T ss_pred CCCHHHH
Confidence 3444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-06 Score=87.08 Aligned_cols=446 Identities=12% Similarity=0.028 Sum_probs=223.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT--LINMYA--V 178 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 178 (798)
+.-+..+|++++|.....++...+ +-|...+.+-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 345567888889998888888655 55566677777777888888888744332 22 1111122 234444 6
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHH-hhcCCHHHHHHHHhcCCCC
Q 003746 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF-GRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~~ 257 (798)
.+..|+|+..++.....|..+...-...+.+.|++++|+++|+.+.+.+...+...+..- ...+..-.+. +.+..+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 789999999998555555546666667788999999999999999776555444333221 1111111221 34444443
Q ss_pred CcccHHHH---HHHHHhcCChhHHHHHHHHHHHCC-------CCC------CchhH-HHHHHHHhccCchHHHHHHHHHH
Q 003746 258 DLVSWSAL---ISCYEQNEMYEEALVLFMNMIDHR-------VMV------DEVVV-VSVLSACANLTVVKAGTSVHALA 320 (798)
Q Consensus 258 ~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~p------~~~t~-~~ll~a~~~~~~~~~a~~i~~~~ 320 (798)
...+|..+ .-.+...|++.+|+++++...+.+ -.- +..+. .-+.-.+-..|+-+++.+++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344433 346678899999999998873211 100 00011 11122334568888888888888
Q ss_pred HHhCCccc---hhHHHHHHHHHHhCCCHH-HHHHHHHhcCCCChhhHHHHHH-------------HHHhcCCHHHHHHHH
Q 003746 321 VKIGIECY---INLQNALIHMYSSCGEIT-TAEKLFDAGHNLDLISWNSMIS-------------GYLKCGSVEKARALF 383 (798)
Q Consensus 321 ~~~g~~~~---~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~A~~~~ 383 (798)
++...... ....|.|+.+-....-++ .++..++........-|-..+. ...-.+..+.++++-
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 87764322 223344443322222122 2333333322111111111110 011233445555555
Q ss_pred HhcCCCC-HHHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccchhHHHHHHH--------
Q 003746 384 DAMIEKD-VVSWSTMISGY--AQHDQFSETLSLFMEMQHHGIRPD--EATLVSVISACTHLVALDQGKWIHA-------- 450 (798)
Q Consensus 384 ~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~-------- 450 (798)
...+... ...+.+++... ++...+.+|.+++...-+. .|+ .+.....+......|+++.|.+++.
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 5554432 22233333221 1222355555555554433 222 2233333444555666666666666
Q ss_pred HHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HH
Q 003746 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-IT 529 (798)
Q Consensus 451 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 529 (798)
.+.+.+..| .+..+++.+|.+.++.+.|..++.+.. ..|..-... .+.. .+
T Consensus 409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai------------------------~~~~~~~t~--s~~l~~~ 460 (652)
T KOG2376|consen 409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI------------------------KWWRKQQTG--SIALLSL 460 (652)
T ss_pred hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH------------------------HHHHHhccc--chHHHhH
Confidence 333333333 333445666666665555555544222 111111000 0000 11
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+.-+...-.+.|+.++|...++++.+. .++|..+...+|.+|++. +.+.|..+-..+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 112222223446666666666666542 234556666666666554 355566555555
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-08 Score=110.48 Aligned_cols=210 Identities=11% Similarity=-0.001 Sum_probs=163.1
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH---------hcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYM---------KLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL 507 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 507 (798)
+++++|...++..++.... +...+..+..+|. ..+++++|...+++..+. +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3557888899988876432 3445555555443 234588999999987754 45688888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHH
Q 003746 508 ADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEEL 585 (798)
Q Consensus 508 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 585 (798)
+++|+..|++..+. .|+. ..+..+..++...|++++|...++++++ +.|+ ...+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999984 5664 4677778889999999999999999976 5565 23334455567778999999999
Q ss_pred HHhC--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 586 IESM--PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 586 ~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+++. ...| +...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 2235 45567778888889999999999999998899988888888888888888 588887777664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-07 Score=100.22 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEH-----RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--------PMSPD 594 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~ 594 (798)
+++.+...|.+.|++++|.++|++++... +..+. ..+++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 56666677777777777777777665432 11222 455667777777788777777777664 23455
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 595 -VATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 595 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+|..|...|...|+++.|+++.++++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45789999999999999999999988873
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-08 Score=95.12 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...+..+...|...|++++|.+.+++..... +.+...+..+...+...|++++|...+....+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 4566777777777888888888877776542 11233333344444444444444444444443321
Q ss_pred HHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 003746 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 549 (798)
.+...+..+...+...|++++|++.|++.......|. ...+..+...+...|++++|...
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1223455555556666666666666666655322222 23445555666677777777777
Q ss_pred HHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 550 FNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 550 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+++..+. .| +...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+..|
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7776542 23 3456666777777777777777777665 22 23455555666677777777777777776665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-06 Score=80.57 Aligned_cols=445 Identities=14% Similarity=0.091 Sum_probs=239.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHH
Q 003746 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVE 214 (798)
Q Consensus 138 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~ 214 (798)
+.-+...+++..|..+++.....+-+....+-.-+...|...|++++|..++..+. .++...|-.+..++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 33445566777788877776654433223344445667778888888888887544 344556766777777777888
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
+|..+-....+. +.--..|...--|.|+-++-..+-+.+... ..---+|.+.....-.+.+|+++|.+....+ |+-
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEY 184 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhh
Confidence 887776655432 222223344445556655555444444321 1222334444455557788888888877643 444
Q ss_pred hhHHHHHHHH-hccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhC--CCHHHHH--HHHHhcCCCChhhHHHHHHH
Q 003746 295 VVVVSVLSAC-ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC--GEITTAE--KLFDAGHNLDLISWNSMISG 369 (798)
Q Consensus 295 ~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~--~~~~~~~~~~~~~~~~li~~ 369 (798)
...+.-+..| .+..-.+.+..+++.-++. ++.++...|.......+. |+..+++ ++-+.+.+. -..+.-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~ 258 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEY 258 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHH
Confidence 4455444444 4556666666666555443 233333333333322221 2221111 111111100 111122
Q ss_pred HHhcC-----CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 370 YLKCG-----SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 370 ~~~~g-----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
+++.+ .-+.|.+++-.+...=+..--.++--|.++++..+|..+.+++.. ..|-......+..+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--------- 327 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--------- 327 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH---------
Confidence 22222 224444444333322223333455556677777777776665421 12222222222211
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC----C-cchHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK----G-VSSWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
++..-......+.-|...|+-.-+. | +.--.+|.+.+.-..++++.+-.+....
T Consensus 328 ---------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 328 ---------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred ---------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122344455555443322 2 2345556666666667777777777666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc-CCcchHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHH
Q 003746 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-PNSKHYG-CMVDLLGRAGMLKEAEELIESMPMSPDVAT 597 (798)
Q Consensus 520 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 597 (798)
.- +.-|.+.-..+..+.+..|.+.+|.++|-.+. |.+ .|..+|. .|...|.+.|..+-|.+++-++.-+.+..+
T Consensus 387 sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs 462 (557)
T KOG3785|consen 387 SY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS 462 (557)
T ss_pred HH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH
Confidence 54 33333444456778888888888888887762 222 2344444 456788889999999998888854444444
Q ss_pred H-HHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 598 W-GALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 598 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
. ..+.+-|.+.+.+--|-++|+.+..++|..
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 3 445567888888888889998888888864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-06 Score=90.62 Aligned_cols=494 Identities=14% Similarity=0.065 Sum_probs=268.8
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHh
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA---LRLSVFEGKLIHDHVLKAGFDSD-----VYVNNTLINMYAV 178 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~---~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~ 178 (798)
...+.+++++.-+......+...+..++..+..++. ..++.++. ++-..+..-+.|. ..++-.++--+.+
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 345566677777777776776777777666655432 33444444 2222222222222 2222222222222
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCC
Q 003746 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMP 255 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 255 (798)
.+.+. .|...|..+.-++.+.|+++.+.+.|++.... ....|+.+...|..+|.-..|..+.++-.
T Consensus 316 ~~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 316 LKKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred Hhhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 22221 23334444555555666666666666655442 33456666666666666666666665543
Q ss_pred C----CCcccHHHHHH-HHH-hcCChhHHHHHHHHHHHC--C----CCCCchhHHHHHHHHhc----cC-------chHH
Q 003746 256 K----KDLVSWSALIS-CYE-QNEMYEEALVLFMNMIDH--R----VMVDEVVVVSVLSACAN----LT-------VVKA 312 (798)
Q Consensus 256 ~----~~~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~a~~~----~~-------~~~~ 312 (798)
. |+..+--.|+. .|. +-|.++++++.-.+.... + +.|- .+..+--+|.. .. ....
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 2 22233333332 222 335666666666555441 1 2222 22222222211 11 1223
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 313 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
+.+.++..++.+. .|+.+.--+.--|+..++++.|.+..++ ....+...|..|.-.+.-.+++.+|+.+.+...+
T Consensus 463 slqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4445555555442 2223333334456677888888777765 3556777888888888888889999888876643
Q ss_pred CCHHHHHH---HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHH--HcCCCCcHHH
Q 003746 389 KDVVSWST---MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR--KNGLKINSIL 463 (798)
Q Consensus 389 ~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 463 (798)
.-..-++. -+..-..-++.++|+.....+... --+...+...+. .| ...+....+. .......+.+
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g---~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EG---KLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hh---hhhhhhcccccCcccccccchh
Confidence 32111111 112222357777777777666431 000000000000 00 0011111000 0011112222
Q ss_pred HhHHHhhHHhcC---CHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003746 464 GTTLIDMYMKLG---CVDNALEVFHGTEEKG------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGV 533 (798)
Q Consensus 464 ~~~li~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 533 (798)
+..+.......+ ..+.....+...+.++ ...|......+...++.++|...+.+... +.|-. ..|...
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 222222211111 1111112222222233 23577777888889999999877777766 33433 355555
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEE--LIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
...+...|..++|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 5677788999999999988754 7886 7888999999999998777776 77766 6666 688999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcc
Q 003746 609 GDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
|+.+.|.+.|.-++++++.+|.
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=96.20 Aligned_cols=231 Identities=11% Similarity=0.095 Sum_probs=163.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 395 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
+.|..+|.+.|.+.+|...|+.-... .|-+.||..+-.+|.+....+.|..++.+-++. ++.++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766654 455556666666677777777776666665554 233444444555666677
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 475 GCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
++.++|.++++...+. ++.+..++..+|.-.+++|-|+..|+++.+.|+. +..-|+.+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7778888887766543 4556666677777788888888888888887754 45567777777777777777777666
Q ss_pred HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
+.... --.| ..-..+|..|.......||+..|.+.|+-++.-+|++...
T Consensus 383 RAlst-at~~------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQP------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCc------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66431 0001 1124567778777788899999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..|+-+-.+.|+.++|+.++...++...
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999888899999999999998876543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-06 Score=94.73 Aligned_cols=582 Identities=11% Similarity=-0.000 Sum_probs=305.7
Q ss_pred HHHHHHHHHHhCCCCch-hhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHH
Q 003746 46 FTQILSQMILTGLIADT-FAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKL 121 (798)
Q Consensus 46 ~~~~~~~~~~~g~~~~~-~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 121 (798)
...+|..+....+.++. ..+..|-. .|. ...+...|.+.|+...+ -+..+|-.....|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~--iYr-d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQ--IYR-DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHH--HHH-HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44556555555544432 34666666 666 66678888888886544 5677899999999999999999888332
Q ss_pred HHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchH
Q 003746 122 MLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200 (798)
Q Consensus 122 m~~~g-~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~ 200 (798)
.-+.. ...-...|..+--.+...++...+..-++...+.. +.|...|..|..+|..+|++..|.++|++....++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22211 00111122333333556678888888888888776 67888999999999999999999999988776555544
Q ss_pred HHH---HHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHH-------HhhcCCHHHHHHHHhcCCC-----------
Q 003746 201 NSI---LAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVL-------FGRKGNVAEACRLFKEMPK----------- 256 (798)
Q Consensus 201 ~~l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~-------y~~~g~~~~A~~~f~~~~~----------- 256 (798)
-.. ....+..|.+.+|+..+...... .....+.|... +.-.|-...|...|+.-.+
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 332 23356688999999888776531 11112222222 2223333334444433211
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch---H---HHHHHHHHHHHhCCccchh
Q 003746 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV---K---AGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~~ 330 (798)
.|...|-.+- .|..+|-+.. .. .|+......+..-.-..+.. + .|-+.+ .....+..+..
T Consensus 711 ~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 711 SDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMY 776 (1238)
T ss_pred hhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccc
Confidence 1222222222 2333443332 11 22222222222212222222 1 011111 11111222233
Q ss_pred HHHHHHHHHHh----CC----CHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhc---CCCCHHHHHH
Q 003746 331 LQNALIHMYSS----CG----EITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAM---IEKDVVSWST 396 (798)
Q Consensus 331 ~~~~li~~y~~----~g----~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ 396 (798)
.+-.|+..|.+ +| +...|...+.+. ...+...||.|.-. ...|++.-|...|-.- .+....+|..
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec
Confidence 34334333332 22 234566777663 33456677776554 5557777777766443 2446778888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccchhHHHHHHHHH--H--HcCCCCcHHHHhHHHhhH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQGKWIHAYI--R--KNGLKINSILGTTLIDMY 471 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~li~~~ 471 (798)
+...+.++.+++.|...|...+.- .| |...+..........|+.-+...++..- . ..|--++..-+-+-....
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 888888888999888888877653 34 3344433333334456555555555542 1 123233333333333344
Q ss_pred HhcCCHHHHHHHHhhcCC-------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHH---
Q 003746 472 MKLGCVDNALEVFHGTEE-------------KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVL--- 534 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll--- 534 (798)
...|+.++-+..-+.+.. .+...|.+.....-+.+.+++|.++..+.... ..+-|..+|+.+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 556665555444443332 12345666666666666666666666554320 0122333444321
Q ss_pred -HHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH--HhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHH
Q 003746 535 -GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL--GRAGMLKEAEELIESM----PMSPDV-ATWGALLGACK 606 (798)
Q Consensus 535 -~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~ 606 (798)
..+...|.++.|..- .+..|-..---.+.-.+ .-.|+++++.+.|+++ ..+.|. +....++.+..
T Consensus 1014 gRL~lslgefe~A~~a-------~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKA-------SWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhcchhhHhhh-------hcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 222333444433322 22222111111111111 2356777777777776 222332 33444555556
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
..+..+.|...+-+...+.|.+......|.-++.-..+-.....+.+++
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred hcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 6677777777777777777666666666655554443333333333333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00023 Score=78.76 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 003746 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422 (798)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 422 (798)
+-+++|..+|++- ..+....+.||. .-+.+|.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 3345555555431 222333333333 34555666655555443 457999999999999999999887543
Q ss_pred CCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC-------------
Q 003746 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE------------- 489 (798)
Q Consensus 423 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 489 (798)
-|+..|.-++.++.+.|.+++-..++..+.+..-+|.+. +.|+-+|++.+++.+-.+++..-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 367789999999999999999999998888876666544 5788899999998887766532110
Q ss_pred ----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Q 003746 490 ----------KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559 (798)
Q Consensus 490 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 559 (798)
.++.-|..|...+...|++..|...-++. .+..||-.+-.+|...+.+.-|. | -|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL 1273 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGL 1273 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCc
Confidence 02334555555566666666555544332 23446666666666554443332 2 122
Q ss_pred --cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 560 --EPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 560 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.....-..-++..|-..|.++|-..+++.. +++. ....++.|.-.|.+. ++++-.+.++-.... -+ .--+
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-vN----ipKv 1347 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-VN----IPKV 1347 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-cc----hHHH
Confidence 223344556777777888888877777765 4443 233455555555443 244333333332211 00 1123
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 003746 636 SNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m 655 (798)
..++.++-.|.|..-++.+-
T Consensus 1348 iRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1348 IRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34555666676666555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-08 Score=94.51 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=162.7
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV-GVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a 536 (798)
|-.--+.+..+|.+.|-+.+|.+.|+.-.+ +-+.+|-.|-.+|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 333445678889999999999999887653 4577899999999999999999999999887 578888865 45578
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChh
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM---PMSPDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 612 (798)
+...++.++|.++++...+ ..| +++...|+...|.-.|+.+-|+.++.++ +. -++..|..+.-+|.-.+++|
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 8889999999999999976 344 6888899999999999999999999876 53 46778899999999999999
Q ss_pred HHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 613 MGERVGRKLVEL--QPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 613 ~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.++..|++++.. +|+ ...+|+.|+.+....|++.-|.+.|+.....+.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999999999864 343 356789999999999999999999998876543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00018 Score=76.42 Aligned_cols=549 Identities=11% Similarity=0.080 Sum_probs=308.0
Q ss_pred CCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 003746 77 PFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~ 153 (798)
..|+-++|......-.+ ++.+.|..+.-.+-...++++|+..|+.....+ +-|...+.-+.-.=++.++++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 57889999887765433 678899998888888899999999999998654 33333444333233456777776666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC-----CCCcchHHHH------HHHHHhCCCHHHHHHHHhh
Q 003746 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-----VLDLVSWNSI------LAGYVNADNVEEAKFIYNK 222 (798)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~d~~~~~~l------i~~~~~~g~~~~A~~~~~~ 222 (798)
-....+.. +.....|..+..++.-.|+...|..+.++.. .++...+.-. .....+.|.+++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 66666654 4556678888888888999999988876533 2333333222 2345678888999988776
Q ss_pred CCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCC--CcccHHHH-HHHHHhcCChhHHH-HHHHHHHHC---CCCC
Q 003746 223 MPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKK--DLVSWSAL-ISCYEQNEMYEEAL-VLFMNMIDH---RVMV 292 (798)
Q Consensus 223 m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~---g~~p 292 (798)
-... ....-..-.+.+.+.+++++|..++..+..+ |.+-|+-. ..++.+--+.-+++ .+|....+. .-.|
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 6543 2334456678899999999999999988764 44444444 34443333334444 555555432 1111
Q ss_pred CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHH----------------Hh--
Q 003746 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF----------------DA-- 354 (798)
Q Consensus 293 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----------------~~-- 354 (798)
-.... +......-.+.....+....+.|+++ ++..+...|-.-...+--+++. +.
T Consensus 291 ~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 291 RRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred hhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 11111 11112222333444555555666543 3344444443222111111111 11
Q ss_pred cCCCChhhHHH--HHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 003746 355 GHNLDLISWNS--MISGYLKCGSVEKARALFDAMIEKDVV---SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429 (798)
Q Consensus 355 ~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 429 (798)
..+|....|+. ++..+-+.|+++.|...++......+. -|-.-...+...|+.++|...+++.++-+ .||...-
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 12455565654 566788899999999999988766443 34444567888899999999998887754 4554443
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHH--------HhH--HHhhHHhcCCHHHHHHHHhhcCCC---------
Q 003746 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSIL--------GTT--LIDMYMKLGCVDNALEVFHGTEEK--------- 490 (798)
Q Consensus 430 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~--li~~~~~~g~~~~A~~~~~~~~~~--------- 490 (798)
.--..-..+.+..++|..+.....+.|. +..- |-. =..+|.+.|++..|++-|..+...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqf 520 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQF 520 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Confidence 3444445567888888888888887765 1111 111 134567777777777776655421
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----cCCcchH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL----EPNSKHY 566 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~ 566 (798)
|-.+| |.+.|-+..=+++++--...--.|.. +. -...|++++-.|...... .++....
T Consensus 521 Dfhty------c~rk~tlrsYv~ll~~~d~L~~~p~y--~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~m 582 (700)
T KOG1156|consen 521 DFHTY------CMRKGTLRSYVELLEWEDNLRSSPYY--LR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKM 582 (700)
T ss_pred hHHHH------HHhcCcHHHHHHHHHHHHhhccChHH--HH----------HHHHHHHHHHHHhcCcccccccchhhhhc
Confidence 11111 12222222111111110000001100 00 012233333333221100 0111111
Q ss_pred H-HHHHHHHhcC-CHHHHHHHHHh--------------CCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCc
Q 003746 567 G-CMVDLLGRAG-MLKEAEELIES--------------MPMSPDVATWGALLGACKK-HGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 567 ~-~l~~~~~~~g-~~~~A~~~~~~--------------~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+ -......+.. +-..|.+.-+. .+..||... +...+.+ ..-.++|.+.+..+....++..
T Consensus 583 s~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~ 659 (700)
T KOG1156|consen 583 SDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKG 659 (700)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccch
Confidence 1 1112221111 11111111111 133455442 2223333 2345778888888888899999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..|.+-..+|.+.|++.-+.+..+.....
T Consensus 660 ~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 660 ETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999888776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-07 Score=91.55 Aligned_cols=226 Identities=10% Similarity=-0.076 Sum_probs=142.4
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 405 DQFSETLSLFMEMQHHG-IRPD--EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
+..+.++.-+.++.... ..|+ ...+......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555554321 1221 1233344444555666666666666666553 235677788888888899999999
Q ss_pred HHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 482 EVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 482 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
..|++..+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 888887643 3567888888899999999999999998874 565542222223345567899999999776542
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCcch
Q 003746 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM----SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP-DHDGF 631 (798)
Q Consensus 559 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 631 (798)
..|+... ..++..+......+++.+.+.+. .. .| ...+|..+...+...|++++|+..|+++++.+| +....
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3344322 23443333222223333333322 11 12 345899999999999999999999999999997 44443
Q ss_pred HHHHH
Q 003746 632 HVLLS 636 (798)
Q Consensus 632 ~~~l~ 636 (798)
...+.
T Consensus 274 ~~~~~ 278 (296)
T PRK11189 274 RYALL 278 (296)
T ss_pred HHHHH
Confidence 33343
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-06 Score=89.40 Aligned_cols=539 Identities=12% Similarity=0.034 Sum_probs=293.6
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHcc
Q 003746 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191 (798)
Q Consensus 112 ~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 191 (798)
...|+..|-+..+..+ .=...|..|-..|....+...|++.|..+.+.+ +.|...+..+.+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5556666555554321 112346777777766667778888888888776 67778888899999999999988887433
Q ss_pred CCCCCc-----chHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHH
Q 003746 192 SPVLDL-----VSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263 (798)
Q Consensus 192 ~~~~d~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 263 (798)
..+.+. ..|--..-.|.+.++...|+.-|+...+. |...|..|..+|.++|++..|.++|++...-++.+|-
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 332222 23444444577788888888888887765 4556778999999999999999999887654444332
Q ss_pred H---HHHHHHhcCChhHHHHHHHHHHHCC-----CCC-CchhHHHHHHHHhccCc-------hHHHHHHHHHHHHhCCcc
Q 003746 264 A---LISCYEQNEMYEEALVLFMNMIDHR-----VMV-DEVVVVSVLSACANLTV-------VKAGTSVHALAVKIGIEC 327 (798)
Q Consensus 264 ~---li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~~~-------~~~a~~i~~~~~~~g~~~ 327 (798)
. ....-+.+|.+.+|+..+......- .+. -..++......+...|- ++...+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 2233466788888888887765321 000 11122222222222221 222222222222222111
Q ss_pred chhHHH-------------------HHHHHHHh----CCCH---H---HHHHHHHh--cCCCChhhHHHHHHHHHh----
Q 003746 328 YINLQN-------------------ALIHMYSS----CGEI---T---TAEKLFDA--GHNLDLISWNSMISGYLK---- 372 (798)
Q Consensus 328 ~~~~~~-------------------~li~~y~~----~g~~---~---~A~~~~~~--~~~~~~~~~~~li~~~~~---- 372 (798)
+...+- .++..+.+ .+.. + -+.+.+-. ....++.+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 211111 11111111 1111 0 00000000 111224445444433332
Q ss_pred cC----CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHH
Q 003746 373 CG----SVEKARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445 (798)
Q Consensus 373 ~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 445 (798)
+| +...|...+.... ..+...||.|.-. ..-|.+.-|...|-+-.... +-+..+|..+--.|....+++.|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 11 2234444444432 2355566665544 44455555555555444321 22444555555556666677777
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-----C---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-----E---KGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
.+.+....... +.+...|--..-.-...|+.-++..+|..-. + ++..-|-.-..-...+|+.++-+...++
T Consensus 870 ~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 77776665542 2233333333333345566666666665411 1 2334455555555667776665544443
Q ss_pred HHH---------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH----HHHHHHHhcCCHHHHHH
Q 003746 518 MKK---------SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 518 m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~ 584 (798)
+-. .|.+.+...|........+.+...+|.+...+.+.-...+-+...|+ ....++...|.++.|..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 321 12333445677777777788888888777766543222334455555 34455667788888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHH
Q 003746 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV---LLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 585 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
-+...+...|..+-.+-+.. .-.++++++.+.|++++.+..++....+ .++......+.-+.|....-+..
T Consensus 1029 a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1029 ASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 77666555555554444444 4458899999999999987555443333 33444456677777776654443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=98.57 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=157.6
Q ss_pred cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
+.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+++..+- |....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555543 234555555655566666666666666665543 455666677777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003746 515 FSEMKKSGVTPNEITFVGV--------LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++.-+... |...-...- -........+....++|-.+....+..+|..++.+|.-+|--.|++++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87765532 111000000 01122233455566777777776676788999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 587 ESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 587 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+.+ .++| |...||-|...+....+.++|+.+|.+++++.|.-....+.|+-.|...|.++||.+.+-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 988 6677 6889999999999999999999999999999999999999999999999999999999876654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-06 Score=89.85 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
++..+...|.+.|++++|.++.++.++ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 445556667788888888888888875 4565 778888888888888888888888877 3333 555555566666
Q ss_pred HHcCChhHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 606 KKHGDHEMGERVGRKLVELQ--PDH-------DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+.|+.++|++.+.....-+ |.. ..+..-.+.+|.+.|++..|++.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888888887775433 221 11234567888888988888887766643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=78.96 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=135.9
Q ss_pred HhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHH
Q 003746 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 512 (798)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|.-..-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333444444444444444432 22445566677777888888888888876543 34556777777788888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 513 EMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 513 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
..|++......-|. ..||..+.-+..+.|+.+.|.++|++.++ +.|+ ......+.+...+.|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888887433333 24777777777888999999999988875 4564 667778888888899999999888877
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 590 -PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 590 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
...++..+.-..+..-...||.+.+.+.-.++....|.....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 334677777777777788888888888888888888876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-05 Score=84.12 Aligned_cols=414 Identities=12% Similarity=0.122 Sum_probs=216.5
Q ss_pred CCchhHHHHHHH--HHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhh
Q 003746 163 DSDVYVNNTLIN--MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240 (798)
Q Consensus 163 ~~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~ 240 (798)
..|..+..++++ .|..-|+.|.|.+-...++ ....|..|.+.+++..+++-|.-.+..|.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~---------------- 784 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMK---------------- 784 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhh----------------
Confidence 356666666665 4667788888887776665 34568888888888888888877776663
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHH
Q 003746 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320 (798)
Q Consensus 241 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 320 (798)
+...|+.+=+....++ ..-.-..-...+.|..++|+.+|++-.+ |..+=..|...|.+++|.++-+.-
T Consensus 785 --~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 785 --NARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred --hhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc
Confidence 2233333322222222 1111111222455666677776666554 222222333445555554443321
Q ss_pred HHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003746 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400 (798)
Q Consensus 321 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 400 (798)
-+..+ ..+|-....-+-..++++.|++.|++...+-...+..|. .+...-+...+.+.++ ..|.-...-
T Consensus 853 DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqY 921 (1416)
T KOG3617|consen 853 DRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQY 921 (1416)
T ss_pred cceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHH
Confidence 11111 123333344444556667777766654333322222221 1222223333444333 333334455
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
.-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++- .|......|..+|...|++.+|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHH
Confidence 5567888999988887654 445666677788888888776542 3566667788999999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCC---------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 481 LEVFHGTEEKGVSSWNALIIGFAMNGL---------------ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 481 ~~~~~~~~~~~~~~~~~li~~~~~~g~---------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
..+|.+.. ++..-|..|..++. .-.|..+|++. |.. +......|-++|.+.+
T Consensus 987 v~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 987 VKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHH
Confidence 98887654 22223333322222 22233333321 111 1122334555666655
Q ss_pred HHHH---------HHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003746 546 GHRH---------FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 546 a~~~---------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
|+++ ++-+.++..-..|+...+--.+.+....++++|..++-... -+..-+.. +...+...-++
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~Alql-C~~~nv~vtee 1126 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQL-CKNRNVRVTEE 1126 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHH-HhcCCCchhHH
Confidence 5543 23333322222345666666666777777777776655431 11222222 23334444444
Q ss_pred HHHHHHh-c--CCCC---cchHHHHHHHHHhcCChhHHHHHH
Q 003746 617 VGRKLVE-L--QPDH---DGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 617 ~~~~~~~-~--~p~~---~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+.+.|-- . .|+. ......++..|.++|.+..|.+-|
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4444431 1 1211 124556788888888877776554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-06 Score=85.60 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=124.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc----------chHHHHH
Q 003746 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV----------SSWNALI 499 (798)
Q Consensus 430 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 499 (798)
..+.++..+..+++.+.+-+...+... .+..-++.....|...|++......-....+.+- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666666666554 4555556666667777766666655544333321 1222344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-chHHHHHHHHHhcCC
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGM 578 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 578 (798)
.+|.+.++++.|+..|.+.......||.. .+....+++....+... -+.|.. .-...-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 46666777778888887766554444432 12223333333333321 133331 111122455666777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+-++....+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666 2334 566667777777777777777777777777777777777766667777777777777776655
Q ss_pred hC
Q 003746 657 RR 658 (798)
Q Consensus 657 ~~ 658 (798)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 53
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-05 Score=73.94 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHhcCCCCHHHHHHHH---HHHHhC
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS---GYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQH 404 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~ 404 (798)
-.--|...+...|++.+|+..|...++.|+..|.++.. .|...|+...|..-|++..+.-+..+.+-| ..+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 33445556666777788888887777777777766653 566667666666666655433222222222 356677
Q ss_pred CChHHHHHHHHHHHHcCCCCC----H----------HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 405 DQFSETLSLFMEMQHHGIRPD----E----------ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd----~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
|.+++|..=|+...+....-+ . ......+..+...|+...++.....+++.. +.|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 888888888887766532110 0 112222334455677777777777777753 4577778788888
Q ss_pred HHhcCCHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH----HH------H---
Q 003746 471 YMKLGCVDNALEVFHGT---EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV----GV------L--- 534 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~l------l--- 534 (798)
|...|++..|+.-++.. ...+....--+-..+...|+.+.++...++-++ +.||..... .| |
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 88888888887665543 345566777777778888888888888888877 577764211 11 1
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKK 607 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 607 (798)
......+.+.++.+-.++.++ .+|. ...+..+-..|...|++.+|++.-.+. .+.|| +.++---..+|..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 112234556666666665554 2333 223334455566667777777766655 44554 5566666667777
Q ss_pred cCChhHHHHHHHHHHhcCCCCcch
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
...++.|+.-|+++.+.+|++..+
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHH
Confidence 777777777777777777776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-05 Score=80.38 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
|.-+...|-..|++++|++++++.... .|+ +..|..-...+-+.|++.+|....+.+..... .|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 345566778888888888888888775 455 44566667778888888888888888887653 47777777888888
Q ss_pred hcCCHHHHHHHHhhcCCCCc----------chH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC-------------CC
Q 003746 473 KLGCVDNALEVFHGTEEKGV----------SSW--NALIIGFAMNGLADKSLEMFSEMKKS--GV-------------TP 525 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~p 525 (798)
++|++++|.+++......+. ..| .....+|.+.|++..|++.|....+. .+ +.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 89999999888887765542 134 33456788888888888777665431 01 11
Q ss_pred CHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHhCCCcCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 003746 526 NEITFVGVLGACRHMG-------LVDEGHRHFNSMIQEHRLEPNSKH-----------YGCMVDLL---GRAGMLKEAEE 584 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~ 584 (798)
+..+|..++...-+.. -...|.+++-.+-........... -..+-.-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233444443332211 122344444444221000000000 00000000 11111112221
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 585 LIE-----------SM----P--MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 585 ~~~-----------~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.-. +. + ..+|+.- ..|+ ....=+++|.++++-+.+..|++..++.+--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 00 1 1122211 1121 122346889999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 003746 648 VLEVRGM 654 (798)
Q Consensus 648 a~~~~~~ 654 (798)
|++.+++
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-05 Score=75.26 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=212.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccc
Q 003746 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS-VISACTHLV 440 (798)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~ 440 (798)
-+.+.+.-.|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+..+ ++||-..-.. -...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4556677899999999999999998888877764 578999999999998888876 5788543222 123467899
Q ss_pred chhHHHHHHHHHHHcCCCCc--HHHH------------hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKIN--SILG------------TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFA 503 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 503 (798)
.+++|..=|..+++.....+ ..++ ...+..+.-.|+...|++....+.+ .|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988753211 1111 1223345567889999988887764 47778888889999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc----hHHHH---HH-----
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK----HYGCM---VD----- 571 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---~~----- 571 (798)
..|.+..|+.=++...+.. .-|..++..+-..+...|+.+.++...++.++ +.||-. +|..| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777642 33445676777778888999888887777654 667632 22222 11
Q ss_pred -HHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 572 -LLGRAGMLKEAEELIESM-PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 572 -~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
...+.+++.++.+-.++. ...|. ...+..+-.+++..|++.+|++...++++++|++..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123456666666665554 44454 22344555666788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 003746 645 WDDVLEVRGMMVRRG 659 (798)
Q Consensus 645 ~~~a~~~~~~m~~~~ 659 (798)
+++|+.-|++..+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-05 Score=78.96 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=143.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchh
Q 003746 366 MISGYLKCGSVEKARALFDAMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443 (798)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 443 (798)
+.++..+..+++.|.+-++...+. ++.-++....+|...|.+.+....-....+.|-. ...-|+.+-
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa---------- 298 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA---------- 298 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH----------
Confidence 344444555666666666555433 2233455556677777666666555544333211 000011100
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 523 (798)
.....+...|.+.++++.|...|.+....-.. -....+....++++...+...- +
T Consensus 299 ------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~ 353 (539)
T KOG0548|consen 299 ------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--I 353 (539)
T ss_pred ------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--h
Confidence 01111444677778888888887764422100 1112223344555555544443 3
Q ss_pred CCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 003746 524 TPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWG 599 (798)
Q Consensus 524 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 599 (798)
.|... -...-...+.+.|++..|...+.++++. .| |...|..-.-+|.+.|.+.+|++-.+.. ...|+ ...|.
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 44432 1222255677889999999999998874 35 5888999999999999999888876665 44554 44555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
-=..++....+++.|.+.|++.++.+|++..+...+...+...
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 5566666778999999999999999999988777777666543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.3e-07 Score=90.02 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcch---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH---YGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLG 603 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 603 (798)
.....+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-...+.+|.-+|+++ ...+++.+.+.+..
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 344444555555666666666655532 2233111 112222222233566777777766 33456677777777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW-DDVLEVRGMMVR 657 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 657 (798)
+....|++++|+++++++++.+|+++.+...++-+....|+. +.+.+++..++.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777778888888888888888888777777777777777777 556667766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-05 Score=80.73 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=147.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh----cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDE-ATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
..+...|++++|.+.+++.... .|+. ..+.. ...+. ..+..+.+.+.+... ....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHH
Confidence 3455667777777777777664 3332 22221 11111 233344444443331 11112223344455667778
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCcHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPNE--ITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~ 547 (798)
.|++++|.+.+++..+. +...+..+...|...|++++|+.++++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888876643 455677778888888888888888888776422 1222 23445667778888888888
Q ss_pred HHHHHHHHhCCCcCCcchH-H--HHHHHHHhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003746 548 RHFNSMIQEHRLEPNSKHY-G--CMVDLLGRAGMLKEAEEL---IESM----PMSPDVATWGALLGACKKHGDHEMGERV 617 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 617 (798)
.++++........+..... + .+...+...|..+.+.+. .... +.............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888874321111111111 1 223333344432222222 1111 1111122223456667788899999999
Q ss_pred HHHHHhcC-C--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 618 GRKLVELQ-P--------DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 618 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++.+.... . .........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88876421 1 134455677788899999999999998877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-05 Score=73.09 Aligned_cols=309 Identities=11% Similarity=-0.006 Sum_probs=145.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHH
Q 003746 99 FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN-TLINMYA 177 (798)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~ 177 (798)
+++.+.-+.+..++.+|++++..-.+.. +.+....+.+..++....++..|...++++-..- |...-|. --...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4555555666666667766666555442 2244445555555556666666666666654432 2221111 1122333
Q ss_pred hcCChHHHHHHHccCCCC-CcchHHHHHHH--HHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 178 VCGDLSAARKLFDESPVL-DLVSWNSILAG--YVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~~~-d~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
+.+.+.+|++|...|... +...-..-+.+ ....+++..+..+.++... .+..+.+.......+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke------------ 157 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE------------ 157 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc------------
Confidence 555666666666555532 11111111111 1234444444444444442 3333344444444444
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHH-
Q 003746 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ- 332 (798)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~- 332 (798)
|+++.|++-|+...+-|--.....|+..+..+ +.++...|.+...+++++|+...+...
T Consensus 158 -------------------gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 158 -------------------GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred -------------------ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 44444444444444332222223333333222 234444444444444444432211100
Q ss_pred ---HHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhC
Q 003746 333 ---NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-----DVVSWSTMISGYAQH 404 (798)
Q Consensus 333 ---~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~ 404 (798)
...+++-.-.+-...++. .-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cceeccCchhcccchHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 000000000000000000 00112233333455889999999999999866 777765544322 23
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
+++.+..+-+.-+..... -...||..++-.||+..-++.|-.++.+
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 555555555555554432 3457888888889988888888777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-06 Score=83.98 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=109.0
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV------SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----T 529 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 529 (798)
....+..+...|.+.|++++|...|+++...+. .+|..+...|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777766543211 24556666667777777777777776653 23221 2
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHHhCCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003746 530 FVGVLGACRHM--------GLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600 (798)
Q Consensus 530 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 600 (798)
+..+..++... |+.++|.+.|+++++. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566666666666543 2332 111111110 0000000 001124
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|.++++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678889999999999999999877654 67889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.4e-05 Score=70.75 Aligned_cols=277 Identities=10% Similarity=0.044 Sum_probs=149.1
Q ss_pred hcCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 372 KCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
..+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+. |..| ...|+..+. ..+.++...|....
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHH
Confidence 45566666666666653 34444444455555666666666666665543 3333 344444433 23445666666666
Q ss_pred HHHHHcCCCC-------------c--------HHHHhHHH-------hhHHhcCCHHHHHHHHhhcCCC-----CcchHH
Q 003746 450 AYIRKNGLKI-------------N--------SILGTTLI-------DMYMKLGCVDNALEVFHGTEEK-----GVSSWN 496 (798)
Q Consensus 450 ~~~~~~~~~~-------------~--------~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 496 (798)
.+++++|+.. | ..+-++++ ..+.+.|+.+.|.+.+..|+.+ |++|..
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 6666554431 1 11122233 3457889999999999999965 567765
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-cCCcchHHHHHHHHH-
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL-EPNSKHYGCMVDLLG- 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~- 574 (798)
.+.-.= ..+++.+..+-+.-+...+.- ...||..++-.|++..-++-|-.++.+-.. ..+ -.+...|+ |++.+.
T Consensus 282 N~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 282 NQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHh
Confidence 553222 244555555555555554332 246999999999999888888887754211 000 01223333 333333
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCh----hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 575 RAGMLKEAEELIESMPMSPDVATWGALLGAC-KKHGDH----EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
..-..++|.+-++.+...-....-..-+..- .++.+- ..+++-+++.+++. ..+...-+++|.+..++..+.
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vE 434 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVE 434 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHH
Confidence 3445666666555441000000000111111 122222 23334445555432 124556778899999999999
Q ss_pred HHHHHHHh
Q 003746 650 EVRGMMVR 657 (798)
Q Consensus 650 ~~~~~m~~ 657 (798)
++|..-.+
T Consensus 435 k~Fr~Sve 442 (459)
T KOG4340|consen 435 KIFRKSVE 442 (459)
T ss_pred HHHHHHHh
Confidence 99987654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=86.76 Aligned_cols=247 Identities=14% Similarity=0.118 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHHh--cCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHH
Q 003746 372 KCGSVEKARALFDA--MIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448 (798)
Q Consensus 372 ~~g~~~~A~~~~~~--m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 448 (798)
-.|++..+..-.+. ..+. +.....-+..+|...|+++.++.-. ... -.|....+..+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 44555555543331 1111 2233444566777777766554322 222 255555544444444332333333332
Q ss_pred HHHHHHcCCC-CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003746 449 HAYIRKNGLK-INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527 (798)
Q Consensus 449 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 527 (798)
+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 2222222222 23344444446677889999999888765 45666677888999999999999999999873 444
Q ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 528 ITFVGVLGACRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 528 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
.+...+..++.. .+.+.+|..+|+++..+ ..+++.+.+.+..++...|++++|.+++++. ...| |..++-.+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 445455554432 33689999999998664 4577888999999999999999999999886 4344 56677788
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHhcCCCCc
Q 003746 602 LGACKKHGDH-EMGERVGRKLVELQPDHD 629 (798)
Q Consensus 602 ~~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 629 (798)
+......|+. +.+.+...++....|+++
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8888888887 677888899888999875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0014 Score=79.44 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=126.8
Q ss_pred ccCchHHHHHHHHHHHHhCCccc----hhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCC--hhhHHHHHHHHHh
Q 003746 306 NLTVVKAGTSVHALAVKIGIECY----INLQNALIHMYSSCGEITTAEKLFDAGH-------NLD--LISWNSMISGYLK 372 (798)
Q Consensus 306 ~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~--~~~~~~li~~~~~ 372 (798)
..|+++.+...+......-...+ ....+.+...+...|++++|...+++.. .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 45555555555555544211111 1233445555666777777766665421 111 1233444555667
Q ss_pred cCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHh
Q 003746 373 CGSVEKARALFDAMIE-------K----DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD--EATLVSVISACT 437 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~ 437 (798)
.|+++.|...+++... . ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 7777777776655421 0 11233444555666788888888877764421 1121 222333344555
Q ss_pred cccchhHHHHHHHHHHHcCC--CCcHH----HHhHHHhhHHhcCCHHHHHHHHhhcCCCCcc-------hHHHHHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGL--KINSI----LGTTLIDMYMKLGCVDNALEVFHGTEEKGVS-------SWNALIIGFAM 504 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~--~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~ 504 (798)
..|+.+.|.+.+..+....- ..... .....+..+...|+.+.|...+......... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 66777777777666643210 00000 0011123344567777777776554432110 12345555666
Q ss_pred cCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKS----GVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
.|++++|..++++.... |..++. .+...+..++...|+.++|...+.++.+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777766665442 222221 1344444555666666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=77.54 Aligned_cols=121 Identities=8% Similarity=0.040 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003746 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P 590 (798)
Q Consensus 513 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 590 (798)
.+|++..+ +.|+. +.....++...|++++|...|+.++. +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44556677788888888888888865 455 4777888888888888888888888887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 591 MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 591 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
..| +...|..+..++...|++++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 67788888888888899999999999999999988888877776643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=76.30 Aligned_cols=108 Identities=10% Similarity=-0.044 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
.++++.++ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555543 4555 3556788899999999999999987 4455 78899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 626 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
|+++..+..++.++...|+.++|.+.++...+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999887543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00046 Score=83.67 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=118.7
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 003746 370 YLKCGSVEKARALFDAMIE----KDV----VSWSTMISGYAQHDQFSETLSLFMEMQHHGI---RPD--EATLVSVISAC 436 (798)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~ 436 (798)
+...|++++|...+++... .+. ..++.+...+...|++++|...+++.....- .+. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3456666666666655421 121 2344555556667777777777766543210 011 12222333344
Q ss_pred hcccchhHHHHHHHHHHHc----CCCC---cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChH
Q 003746 437 THLVALDQGKWIHAYIRKN----GLKI---NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 509 (798)
...|+++.|...++..... +... .... +..+...+...|+++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~~la~~~~~~G~~~ 590 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL-------------------------------LRIRAQLLWEWARLD 590 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH-------------------------------HHHHHHHHHHhcCHH
Confidence 4555565555555444331 1100 1111 222233334445555
Q ss_pred HHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH-----HHHHHHHHhcCCHH
Q 003746 510 KSLEMFSEMKKS--GVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-----GCMVDLLGRAGMLK 580 (798)
Q Consensus 510 ~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~ 580 (798)
+|...+++.... ...|. ...+..+.......|+.++|.+.++.+..-..-......+ ......+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 555555444321 01111 1123333344455566666666665553211100000000 01123334466666
Q ss_pred HHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHH
Q 003746 581 EAEELIESMPMS--PDV----ATWGALLGACKKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 581 ~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
.|.+.+...... ... ..+..+..++...|+.++|...++++++.. ++....+..++.+|...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 666666554211 111 113345555666677777777777666531 11223455666667777777777
Q ss_pred HHHHHHHHh
Q 003746 649 LEVRGMMVR 657 (798)
Q Consensus 649 ~~~~~~m~~ 657 (798)
.+.+.+..+
T Consensus 751 ~~~L~~Al~ 759 (903)
T PRK04841 751 QRVLLEALK 759 (903)
T ss_pred HHHHHHHHH
Confidence 777666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-06 Score=78.56 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=98.7
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hhH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC-KKHGD--HEM 613 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~ 613 (798)
.++.+++...++..++ ..| +...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777765 344 5888999999999999999999999888 4455 677888888874 67677 599
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
|.++++++++.+|+++..+..++.++...|++++|...++++.+...
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999987543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=59.66 Aligned_cols=33 Identities=42% Similarity=0.616 Sum_probs=26.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 003746 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 193 (798)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=73.34 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444556677788999999999999987 4455 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003746 641 SKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~ 658 (798)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-07 Score=57.93 Aligned_cols=33 Identities=42% Similarity=0.799 Sum_probs=23.2
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003746 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387 (798)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (798)
+..||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 456666677777777777777777777777763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0048 Score=64.53 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC-cHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 407 FSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI-NSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
.+.....++++...- ..| ..+|...++..-+..-++.|+.+|..+.+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555555554432 233 3456667777777777888888888888776666 7778888887766 36677777777
Q ss_pred hhcCCC--Cc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-
Q 003746 485 HGTEEK--GV-SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHR- 558 (798)
Q Consensus 485 ~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 558 (798)
+--..+ |. .--+.-+.-+...++-..|..+|++....++.||.. .|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 743322 22 223444555566666667777777777665555543 566666666666666666666666544433
Q ss_pred -CcCCcchHHHHHHHHHhcCCHH
Q 003746 559 -LEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 559 -~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
.+|...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00066 Score=72.31 Aligned_cols=265 Identities=13% Similarity=0.029 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHh---
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGT--- 465 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 465 (798)
...|..+...+...|+.+++...+.+..+.. ..++......+ ...+...|+++.+..+++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 4567777777777888888777776655432 12233222222 2234577999999999999888743 3333333
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMG 541 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 541 (798)
.+.......|..+.+.+.+......+. ..+..+...+...|++++|++.+++..+. .|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 222222335666677777665333332 34445567889999999999999999985 4554 46677778899999
Q ss_pred cHHHHHHHHHHHHHhCCCcCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHHcCChh
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNS--KHYGCMVDLLGRAGMLKEAEELIESM-PMSP--DVATW--G--ALLGACKKHGDHE 612 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~--~--~l~~~~~~~g~~~ 612 (798)
++++|..++++..+.....|+. ..|..+...+...|++++|.+++++. ...| ..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987642222332 34557889999999999999999986 2223 21111 1 2333444556544
Q ss_pred HHHHH---HHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 613 MGERV---GRKLVELQPDH--DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 613 ~A~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.+. ........|.. .......+.++...|++++|.+.++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44443 22211111221 122235667788899999999999988753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-05 Score=88.82 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=105.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGC 568 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 568 (798)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+.+++|....++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777788888888888888888888887 578776 566677888888888888888888865 4564 677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 569 MVDLLGRAGMLKEAEELIESMP-MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
+...+.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|...|+++++...+-..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 8888888888888888888872 234 4778888888888888888888888888876544333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-05 Score=88.33 Aligned_cols=200 Identities=16% Similarity=0.176 Sum_probs=164.4
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--------GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 529 (798)
+.....|-..+.-....+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556666777778889999999998876532 2458999999999999888999999999874 222346
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVATWGALLGAC 605 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 605 (798)
|..|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|.++++++ ..-| -.....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999876 56788999999999999999999999887 2223 344455556666
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
.++|+.+.+..+|+..+.-.|.-...|..+.++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999998889999999989999999999999999987764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=73.49 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003746 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGA 600 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 600 (798)
..|+......+-.++...|+-+....+....... ..-|.......+....+.|++.+|...|.+. .-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4565443355667777888888888887776432 2224556666899999999999999999998 44568999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..+|-+.|+.++|...|.+++++.|+++.++..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988876543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-05 Score=72.09 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=116.1
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
+-.|.+.|+++....-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777888777654443322211 01223566778888888877742 334557888889999999999999
Q ss_pred HHHHHHHHhCCCcC-CcchHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 548 RHFNSMIQEHRLEP-NSKHYGCMVDL-LGRAGM--LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 548 ~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
..|++..+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999875 556 57888888886 467787 59999999998 4455 6788999999999999999999999999
Q ss_pred HhcCCCCcchHHHH
Q 003746 622 VELQPDHDGFHVLL 635 (798)
Q Consensus 622 ~~~~p~~~~~~~~l 635 (798)
+++.|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99988776544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0002 Score=73.50 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
++..+-..+...++.++|+.++.++.+. .|+..| +|+.--.++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHH
Confidence 4555555566666777777777766653 343332 2222222223
Q ss_pred hcC-CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHH
Q 003746 473 KLG-CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLA--DKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 473 ~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 545 (798)
+.| ++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+. .| |...|.....++.+.|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHH
Confidence 333 345666665554432 334555554444445542 5667777777764 33 34466666667777777777
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCh
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA---GM----LKEAEELIESM-PMSP-DVATWGALLGACKKH----GDH 611 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~ 611 (798)
+++.++++++. .| +...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+... ++.
T Consensus 161 eL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 161 ELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 77777777653 23 345555555444443 22 24566666444 4455 678899888888774 345
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKG------------------RWDDVLEVRGMMV 656 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 656 (798)
.+|.+.+.++++.+|+++.....|+++|.... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67888999988899999888899999998642 2356777777763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.1e-05 Score=78.92 Aligned_cols=249 Identities=15% Similarity=0.141 Sum_probs=162.6
Q ss_pred HhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHH
Q 003746 371 LKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGK 446 (798)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~ 446 (798)
.+.|++.+|.-.|+..+.+ +...|--|......+++-..|+..+++.++. .|+ ...+..|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3788888888888887655 4567888888888888888888888887764 554 344445555556666666666
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCC
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTP 525 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p 525 (798)
..++.-++..++- ..+... ...++.+. + ..+..........++|-++. ..+.++
T Consensus 374 ~~L~~Wi~~~p~y-----~~l~~a-~~~~~~~~--------------~-----~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 374 KMLDKWIRNKPKY-----VHLVSA-GENEDFEN--------------T-----KSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHhCccc-----hhcccc-CccccccC--------------C-----cCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 6665555443220 000000 00000000 0 00001111223344454443 444345
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 602 (798)
|......|.-.|.-.|.+++|...|+.++. ++| |...||-|...++...+.++|+.-|.++ .++|. +.++..|.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 555666666667778899999999999875 677 4788999999999999999999999888 77887 55888899
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC-----C-----cchHHHHHHHHHhcCChhHHH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPD-----H-----DGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~ 649 (798)
-+|...|.+++|.+.|-.++.+.+. . ..++..|-.++...++.|-+.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9999999999999999888876554 1 135555655666666655433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0015 Score=70.60 Aligned_cols=211 Identities=11% Similarity=0.113 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 003746 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440 (798)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 440 (798)
..-..+...+...|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.+......
T Consensus 399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 34445566677888888888888874 5788888999999999999888887766 3688888888777776666
Q ss_pred chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+-+ ..+|-....+..+.++++.|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 677777776654322 11222233344678888888887655433 45788888888888888888888888
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 518 MKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 518 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
-.. ..||.. .|+.+-.+|.+.|+-.+|...+++..+ .+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 776 577765 688888888888888888888888866 33 334455556666677888888888888776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.9e-05 Score=74.96 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC-C-cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cc---hH
Q 003746 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK-I-NSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VS---SW 495 (798)
Q Consensus 424 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~---~~ 495 (798)
.....+......+...|+++.|...++.+++.... + ....+..+...|.+.|++++|...++.+.+.+ .. +|
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888999999999999999876432 1 12466778899999999999999999886432 22 46
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH
Q 003746 496 NALIIGFAMN--------GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567 (798)
Q Consensus 496 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 567 (798)
..+..++... |+.++|++.|+++... .|+.......+..... .. ... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~---~~------~~~-~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY---LR------NRL-A--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH---HH------HHH-H--------HHHH
Confidence 6666666654 7889999999999884 5654322111111100 00 000 0 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 568 CMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677889999999999998887 2233 3568889999999999999999998888766653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=70.48 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
..|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4453 455667777888888888888888876 3334 677888888888888999999999999999999998999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.+|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998877643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-05 Score=82.10 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|... ...|| ...||++-.+|.+.|+-.+|..
T Consensus 498 ~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred chhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 4555666666555443 333 2455555666666777777777777665 45564 5577777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.++++.+-++..++....-+....|.|++|.+.+..+.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777777766666655555555556777777777777777653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00044 Score=71.44 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=111.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 569 (798)
...+-...-.+...|.+++|+..++.+... .||...|..+. ..+...++.++|.+.+++++. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566778889999999998874 67777665554 677888999999999998875 5676 5566678
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.++|.+.|++++|..+++.. ..+.|+..|..|..+|...|+..++..... ..|.-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHH
Confidence 88899999999999988887 334478889999999999998887765543 45677899999
Q ss_pred HHHHHHHHHhCC
Q 003746 648 VLEVRGMMVRRG 659 (798)
Q Consensus 648 a~~~~~~m~~~~ 659 (798)
|........++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 998888887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0006 Score=78.50 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=151.1
Q ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-HHHHH
Q 003746 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--------DLISWNSMISGYLKCGSVEKARALFDAMIEK-D-VVSWS 395 (798)
Q Consensus 326 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~ 395 (798)
+.+...|-..|......+++++|++++++..+. -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 344556666777777777777777777652211 1246777777776777777777888777543 3 34577
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK-INSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 474 (798)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++..+++.-.. .......-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888764 3345566777777777777777888888777765222 2344555667777889
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCc
Q 003746 475 GCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGL 542 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~ 542 (798)
|+.+.++.+|+..... -...|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..-...|+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999887643 45689999999999999999999999999988877653 34444443333344
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00029 Score=79.74 Aligned_cols=141 Identities=11% Similarity=0.143 Sum_probs=114.6
Q ss_pred CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003746 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--K-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT-FVG 532 (798)
Q Consensus 457 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 532 (798)
...+...+-.|.....+.|.+++|..+++...+ | +...+..++.++.+.+++++|+..+++... ..|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 455678888899999999999999999998875 3 356788889999999999999999999998 4777765 455
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALL 602 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 602 (798)
+..++.+.|++++|..+|+++... .|+ ...+..+...+...|+.++|...|++. ...|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 557788999999999999999762 344 788889999999999999999999988 2334455555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00023 Score=67.61 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=94.3
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 541 (798)
.-+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3444555556666666665555332 23334555666677777777777777776653 2445556666667777777
Q ss_pred cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHH
Q 003746 542 LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMS--PDVATWGALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (798)
+.++|..-|.+..+ +.| +...++.|.-.|.-.|+++.|..++.+.... .|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776654 344 3556666666677777777777776665222 25556666666666777777776665
Q ss_pred HHH
Q 003746 619 RKL 621 (798)
Q Consensus 619 ~~~ 621 (798)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=53.96 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.025 Score=59.37 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcC---CHHHHHHHHhhcCC---CC-cchHHHHHHHHHHcCChHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG---CVDNALEVFHGTEE---KG-VSSWNALIIGFAMNGLADKSLEMF 515 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~ 515 (798)
+++..+++..+..-..-+..+|..+.+--...- ..+...+.+++... .+ ..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 345556665555433345555554443221111 13444444444432 22 346777788777888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 003746 516 SEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PM 591 (798)
Q Consensus 516 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 591 (798)
.+..+.+..+ +....++++.-++ .++.+-|.++|+.-++.+|- +..--.+.++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4445666666554 57899999999998886543 3445567889999999999999999998 23
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 592 SPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHD----GFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 592 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
.|| ..+|..++.--..-|+...+.++-++....-|.+. ..-..+.+-|.-.+....-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 443 56899999999999999999999988887666221 12334445666666665544444444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.6e-06 Score=53.19 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 003746 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN 131 (798)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 131 (798)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.3e-05 Score=77.68 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
.+++..+...+++++|.++|+++.+. .|+ ....|+..|...++-.+|.+++++. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666667788888888877653 244 4445777777777778888887776 2233 667777777888899
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++++.|+.+++++.++.|++..+|..|+.+|...|++++|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999988775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00068 Score=69.57 Aligned_cols=184 Identities=10% Similarity=0.113 Sum_probs=134.2
Q ss_pred hhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCc-
Q 003746 469 DMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNG-LADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGL- 542 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 542 (798)
..+.+.++.++|+...+.+.+. +..+|+.-...+...| ++++++..++++.+. .|+. ..|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3345567778888888877654 3457777777777777 579999999999985 3443 356655555556665
Q ss_pred -HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCh----
Q 003746 543 -VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH---GDH---- 611 (798)
Q Consensus 543 -~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~---- 611 (798)
.+++..+++++++ ..| +...|+....++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3677888888875 456 5788888888999999999999999998 3333 677888877776554 222
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASK----GRWDDVLEVRGMMVR 657 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 657 (798)
+.++....++++++|++...+..++.++... ++..+|.+......+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677777899999999999999999999873 344567666665443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00052 Score=70.96 Aligned_cols=119 Identities=22% Similarity=0.181 Sum_probs=105.9
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 612 (798)
.+...|..++|+..++.+++. .| |+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 455678999999999999863 45 5777778899999999999999999998 56676 778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|+..+.....-+|+++..|..|+.+|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0019 Score=73.97 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
|--+-..|...++++++..+++.+++.+|.|.....-++..|
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 333444445555555555555555555555544444444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=64.28 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=90.7
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003746 514 MFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P 590 (798)
Q Consensus 514 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 590 (798)
+|++... ..|+.. ....+...+...|++++|.+.|+.+... .| +...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 455543 4556667788889999999999988663 34 5778888999999999999999998887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 591 MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 591 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
..| +...|..+...+...|+++.|...+++++++.|++..+.
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 577888889999999999999999999999999987644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0036 Score=71.79 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=139.5
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAGH--NLDL-ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 404 (798)
+...+..|+..|...+++++|.++.+... .|+. ..|-.+...+.+.++..++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 44566777777877888888877776532 2332 2233333355566665554433 344444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
.++.-+..+...|...+ -+...+..+..+|.+.|..+++..+++.+++.. +-++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 55544444455555432 234466777778888888888888888888877 55778888888888888 888888886
Q ss_pred hhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc
Q 003746 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564 (798)
Q Consensus 485 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 564 (798)
.+. +..|...+++.++.++|.++... .|+.+.+. .++.+.+....+..--+.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHH
Confidence 544 33366777888888888888873 45543321 112222222112122233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACK 606 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 606 (798)
++--+...|-...+++++..+++.+ ...| |.....-++..|+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4444555566666677777776666 3333 4445555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=50.92 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 003746 96 GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129 (798)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 129 (798)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=50.80 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003746 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292 (798)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 292 (798)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.012 Score=56.25 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=39.7
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 578 MLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 578 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 445555555555 23455555555555666666666666666666666666666555555444445555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0044 Score=58.60 Aligned_cols=159 Identities=12% Similarity=0.172 Sum_probs=110.4
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 472 MKLGCVDNALEVFHGTEEKGVSSWNAL---IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
..+|+.+.|..+++.+..+=..++... ..-+-..|++++|+++++.+.+.+ +.|.+++.--+...-..|.--+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 345556666666555443211111111 112345688889999999888865 4456677666666666777778888
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHh
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG---DHEMGERVGRKLVE 623 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 623 (798)
-+....+. +..|.+.|.-+.++|...|++++|.-.++++ -..| +...+..+...+...| +.+.|.+.|.++++
T Consensus 142 ~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888775 5668889999999999999999999999998 3345 5666666766665444 77889999999999
Q ss_pred cCCCCcchHH
Q 003746 624 LQPDHDGFHV 633 (798)
Q Consensus 624 ~~p~~~~~~~ 633 (798)
+.|.+...+.
T Consensus 220 l~~~~~ral~ 229 (289)
T KOG3060|consen 220 LNPKNLRALF 229 (289)
T ss_pred hChHhHHHHH
Confidence 9996544333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=62.18 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=135.2
Q ss_pred cCCHHHHHHHHhhcCCC------Ccc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcH
Q 003746 474 LGCVDNALEVFHGTEEK------GVS---SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLV 543 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~------~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 543 (798)
..+.++..+++.++... +.. .|.-++-+....|+.+.|...++++... + |...-...+- .-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 35678888888776531 122 3444555666788899999999998875 3 5554322222 224456889
Q ss_pred HHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
++|.++++.++++. +.|..+|---+-+.-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998752 335777777777777888877888776665 45568999999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCC
Q 003746 622 VELQPDHDGFHVLLSNIHASKG---RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 622 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 660 (798)
+=+.|-++.++-.++.++.-.| +.+-+++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999998887665 45567778877766443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00051 Score=71.90 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=95.2
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCc
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGL 542 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 542 (798)
...|+..+...++++.|..+|+++.+.+...+..|+..+...++-.+|++++++.... .| |...+..-...|...++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3445555666788888888888888887777777888888888888888888888864 34 33344444556778888
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 593 (798)
.+.|.++.+++++ ..|+ ..+|..|+..|.+.|++++|+..++.+|+.+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888875 5664 6788888888888888888888888886543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00051 Score=62.11 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=62.1
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV----ATWGALLGACKKHGDHEM 613 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 613 (798)
.++.+.+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555666666666655432211 1222223445556666666666666665 111222 234445566666677777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
|+..++.. .-.|-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666552 22333345566677777777777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=59.14 Aligned_cols=92 Identities=23% Similarity=0.218 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 3334 44677778888888899999999999998888888888888888899999
Q ss_pred ChhHHHHHHHHHHh
Q 003746 644 RWDDVLEVRGMMVR 657 (798)
Q Consensus 644 ~~~~a~~~~~~m~~ 657 (798)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=70.30 Aligned_cols=99 Identities=22% Similarity=0.269 Sum_probs=78.9
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEM 613 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 613 (798)
..+.+++.+|+..|.++++ +.| |...|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888875 666 4666666778888888888888877766 55664 5689999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999998776666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.8e-05 Score=62.71 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP---DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 1122 455666678888888888888888888 777777777777778888888888888888
Q ss_pred HHH
Q 003746 652 RGM 654 (798)
Q Consensus 652 ~~~ 654 (798)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.6e-05 Score=58.27 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG-RWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 657 (798)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988765
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=60.63 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIH 639 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 639 (798)
.++..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444445555555554444 11121 2234445555555555555555555555555443 23344555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.|++++|.+.++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.4e-05 Score=47.89 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRV 290 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 290 (798)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0005 Score=72.35 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDH 611 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 611 (798)
..+...|++++|++.|+++++ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 334455666666666666654 233 2445555555555566666666555555 3333 344555555555555666
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHH
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
++|+..++++++++|+++.+...+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666555544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0039 Score=59.41 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=126.4
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK-SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
+-..|...|.......-...-..++......+......-++.+. -.++.+.+.......|.+....-...|.+.|++++
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 44555555654433322222222222333333333333444333 33455566655555555555555678999999999
Q ss_pred HHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHH
Q 003746 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKL 621 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 621 (798)
|.+..... -+.+....=+..+.+..+++-|.+.+++|..-.+..+.+.|..++.+ .+.+..|.-+|+++
T Consensus 127 Al~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 127 ALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 99987652 24555556677788999999999999999544567778878777754 34688899999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 622 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
-+..|..+-.....+.++...|+|++|..+++....+..
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 997777777888888889999999999999999887554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=71.87 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCcchHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CcHHHHHHHHHHHHH
Q 003746 490 KGVSSWNALIIGFAMN--G---LADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHM--------GLVDEGHRHFNSMIQ 555 (798)
Q Consensus 490 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 555 (798)
.+...|...+.+.... + ..++|+.+|++..+ ..||.. .+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555666665554322 2 25577888888777 467653 333332222111 112222333332211
Q ss_pred hCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 556 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1011122344555544444555666666655555 34455555555555555566666666666666666665553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00079 Score=58.45 Aligned_cols=104 Identities=10% Similarity=0.086 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 602 (798)
++..+...+...|++++|.+.|+.+++.+.-.| ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765421111 1234556777788888888888888776 22232 45677888
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.++...|+.+.|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888889999999999999999999876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=58.30 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGC 568 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 568 (798)
|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 377777888888888775 3333 23334456677888888888888888764 22222 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677888889999999888776322 245567778888888999999998888763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=55.60 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=47.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667778888888888888888888888888888888888888888888888876543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.1e-05 Score=47.22 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=27.9
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 003746 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127 (798)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (798)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.2 Score=56.24 Aligned_cols=159 Identities=10% Similarity=0.001 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 494 SWNALIIGFAMNGLAD---KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-+..|.+.|+.+--+ .+..|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567777777777655 455555554442 1223345566677787778888888888776332 4444433331 33
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcC
Q 003746 571 DLLGRAGMLKEAEELIESM-PM-SPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHASKG 643 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 643 (798)
..+...|++..+...++.. .+ ..+ ..+-..+..| .++|.+.+-.++..---.+.-. -..+-....+.....+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566666666665543 10 001 1111222223 3456665544432111111111 1122223445556667
Q ss_pred ChhHHHHHHHHHH
Q 003746 644 RWDDVLEVRGMMV 656 (798)
Q Consensus 644 ~~~~a~~~~~~m~ 656 (798)
+.++-.+.+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 7777776666665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.22 Score=55.96 Aligned_cols=206 Identities=14% Similarity=0.035 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHh-CCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHH
Q 003746 43 FKQFTQILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICL 118 (798)
Q Consensus 43 ~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 118 (798)
++.+.+....+.+. +-.+-.-++.+|.. . +.|+.++|..+++.... .|..+...+-..|...|+.++|..+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl----~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL----F-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH----H-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444433 32333334444443 4 78999999988887643 3666888888899999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHH
Q 003746 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD----------LSAARKL 188 (798)
Q Consensus 119 ~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~ 188 (798)
|++.... -|+......++.++.+.+++..-.++-=++-+. ++.+++.+=++++.+...-. +.-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9988743 577777888888999888887655555444443 46666666666666654321 2334555
Q ss_pred HccCCCCC-c-ch---HHHHHHHHHhCCCHHHHHHHHhh-----CCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC
Q 003746 189 FDESPVLD-L-VS---WNSILAGYVNADNVEEAKFIYNK-----MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256 (798)
Q Consensus 189 f~~~~~~d-~-~~---~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 256 (798)
++.+...+ . .+ .-.-...+-..|++++|++++.. ....+...-+--++++.+.+++.+-.++-.+...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55544333 1 11 11112334467778888887732 2223445555667777777777776665555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=58.29 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
...--+-..|++++|..+|.-+ -.. -+..-|..|..+|...+++++|+..|..+.-+.++||......+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456789999999999877 222 36778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 003746 646 DDVLEVRGMMVR 657 (798)
Q Consensus 646 ~~a~~~~~~m~~ 657 (798)
+.|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.19 Score=54.48 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=145.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC-CCc------------chHHHHHHHHHhCCCHHHHHHHHhhCCCCCch
Q 003746 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDL------------VSWNSILAGYVNADNVEEAKFIYNKMPERNII 229 (798)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~d~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 229 (798)
.|.+..|..|...-.+.-.++.|+..|-+... +.+ ..-.+=|++| -|.+++|.++|-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57888888888777777777777777755331 111 0111222332 5889999999998887775
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 304 (798)
-|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 467788888888888888664332 124788888888888888888888865432 12233444
Q ss_pred hccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003746 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384 (798)
Q Consensus 305 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (798)
.+...+++-..+. ..++.+....-.+.+|+..-|.-++|.+.|-+-..|. +-+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4443333322221 2346677777888999999999999988886644443 23445567778888888877
Q ss_pred hcCCCCHHHHHH--------------HHHHHHhCCChHHHHHHHHHHH
Q 003746 385 AMIEKDVVSWST--------------MISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 385 ~m~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~ 418 (798)
...-|.+.+.-+ -|..+.+.|++-+|.+++.+|.
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 765554443211 1333445555555555555553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=60.16 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGC 568 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 568 (798)
...+..+...+...|++++|+..|++....+..|+ ...+..+...+.+.|++++|...+++.++ ..| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34566666677777777777777777766433322 23566666677777777777777777755 234 2445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
+...|...|+...+..-++.. ...+++|.+.++++++++|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 012577888888888888887 4444455555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0008 Score=62.89 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666777777777777777665 22222 4578888888899999999999999999999998888888888
Q ss_pred HHHhcCC
Q 003746 638 IHASKGR 644 (798)
Q Consensus 638 ~~~~~g~ 644 (798)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=69.91 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR 575 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 575 (798)
....+...|++++|+++|++.++. .|+ ...|..+..++.+.|++++|+..++++++ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 555 45777788899999999999999999976 456 47788889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSPDVATWGALL 602 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 602 (798)
.|++++|...|++. .+.|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 5556544433333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00066 Score=63.22 Aligned_cols=93 Identities=12% Similarity=-0.100 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888877 22222 3578999999999999999999999999999999888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 003746 638 IHA-------SKGRWDDVLEVRGMM 655 (798)
Q Consensus 638 ~~~-------~~g~~~~a~~~~~~m 655 (798)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=53.27 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999888 4456 577899999999999999999999999999999874
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00099 Score=64.70 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.+-+.+.+++++|+..+.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|.....|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34466789999999999987 6666 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003746 648 VLEVRGMMVRR 658 (798)
Q Consensus 648 a~~~~~~m~~~ 658 (798)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999987663
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=64.53 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=90.6
Q ss_pred cC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCcchHH
Q 003746 560 EP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG---DHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 560 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
.| |...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.... ...++..++++++.++|++.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6999999999999999999999999887 4444 6777888887775443 467899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCcc
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 666 (798)
.|+-.+...|++.+|...++.|.+......|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999998765444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0019 Score=52.88 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555554443 1112 234555555666666666666666666665555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0057 Score=62.04 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA-CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 572 (798)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++. +..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57777777778888888888998887542 2233445444444 33356777799999999986 44567888899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 573 LGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999997 22233 358999999999999999999999999999888543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=65.42 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=103.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHhCCCcCCcch-------------
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL--GACRHMGLVDEGHRHFNSMIQEHRLEPNSKH------------- 565 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------- 565 (798)
++...|++++|...--...+. .++. .+..++ .++...++.+.|...|++.++ +.|+-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 445566666666655554442 2211 111122 223345566667777666543 3443211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMS-----PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+..=.+...+.|.+.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++++++|.-...+..-++.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 111234456889999999999887 444 45556777777788899999999999999999999888899999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++|++|.+.+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998887644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0071 Score=66.54 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhc--------CCHHHHHHHHH
Q 003746 522 GVTPNEITFVGVLGACRHM-----GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRA--------GMLKEAEELIE 587 (798)
Q Consensus 522 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 587 (798)
+...|...|...+.+.... +..++|..+|+++++ ..|+ ...|..+..+|... ++++.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456667888888775442 347799999999986 6787 55566554444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 588 SM---P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 588 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+. + ...+..+|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 2335678888877777889999999999999999995 67999999999999999999999998876554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.28 Score=50.59 Aligned_cols=369 Identities=16% Similarity=0.119 Sum_probs=212.9
Q ss_pred CCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHH
Q 003746 59 IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF---IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135 (798)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~ 135 (798)
..|+..|-.|+. -|. ..|..+..++++++|.+|-.. .|.--|++-....+++.+..+|.+.+...+. ...|.
T Consensus 39 PtnI~S~fqLiq--~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQ--YLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWM 113 (660)
T ss_pred chhHHHHHHHHH--HHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHH
Confidence 357889999999 888 899999999999999887544 7999999988899999999999998876544 44444
Q ss_pred HHHHHHhccCChHH------HHHHHHHHHH-hCCCCc-hhHHHHHHHHHHh---cCC------hHHHHHHHccCCC-C--
Q 003746 136 LLAQASALRLSVFE------GKLIHDHVLK-AGFDSD-VYVNNTLINMYAV---CGD------LSAARKLFDESPV-L-- 195 (798)
Q Consensus 136 ~ll~a~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~y~~---~g~------~~~A~~~f~~~~~-~-- 195 (798)
.-|.--.+..+.-. -.+.++.++. .+++|- ...|+..+..+-. .|. +|..++.+.++.. |
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 44444333332222 2345555554 244443 3456665554422 233 3444555554431 1
Q ss_pred -------CcchHHHHHHHHHh---CC----CHHHHHHHHhhCCCC-----------------------------------
Q 003746 196 -------DLVSWNSILAGYVN---AD----NVEEAKFIYNKMPER----------------------------------- 226 (798)
Q Consensus 196 -------d~~~~~~li~~~~~---~g----~~~~A~~~~~~m~~~----------------------------------- 226 (798)
|-..|..=+.-... -| -+-.|...+++...-
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 11111111110000 00 112223333222110
Q ss_pred -------Cc------hHHHHHHH--------------HHhhcCCHHHHHHHHhcCCCCCcccHHHHHH-HHHhcCChhHH
Q 003746 227 -------NI------IASNSMIV--------------LFGRKGNVAEACRLFKEMPKKDLVSWSALIS-CYEQNEMYEEA 278 (798)
Q Consensus 227 -------~~------~~~~~li~--------------~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A 278 (798)
++ .+++..+. -+...++-+.|.+..+.-.+- ..+.+..++ .|--..+-+..
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-SPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-CCchheeHHHHHhhcccHHHH
Confidence 00 11221111 122345666666655443221 111111111 11111111111
Q ss_pred HHHHHHHH----------H----CCC---------------CCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC-Cccc
Q 003746 279 LVLFMNMI----------D----HRV---------------MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECY 328 (798)
Q Consensus 279 ~~l~~~m~----------~----~g~---------------~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~ 328 (798)
...|++.. + .+. .-=...|...+.+..+...++.|+.+|..+.+.| +.++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 11111110 0 011 1123455667777778888999999999999999 6789
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCCC---C--HHHHHHHHHH
Q 003746 329 INLQNALIHMYSSCGEITTAEKLFDAGHN--LDL-ISWNSMISGYLKCGSVEKARALFDAMIEK---D--VVSWSTMISG 400 (798)
Q Consensus 329 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~~li~~ 400 (798)
+.++++++..|+ .|+..-|.++|+.|.. ||. .--+..+.-+...++-+.|+.+|+...++ + ...|..||.-
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~Y 511 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEY 511 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Confidence 999999999887 7888999999987542 444 44466777778899999999999976544 2 3468888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
=..-|+...+..+=++|... -|...+.....+-+
T Consensus 512 Es~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 512 ESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 78888888888887777663 45554444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00037 Score=53.46 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=42.1
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|++.++++++..|++..+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888766553
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00095 Score=52.01 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...|.+.++++.|.+.++++++++|+++..+...+.+|...|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999988888899999999999999999888876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.3 Score=49.54 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=155.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDE--ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
-.|++++|.+-|+.|... |.. .-+..+.-..-+.|+.+.|+++-+..-..- +.-.....++++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 347777777777777642 211 112223333345677777777766665442 22345567788888888999999
Q ss_pred HHHHhhcC-----CCCcc--hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCcHHHHHHH
Q 003746 481 LEVFHGTE-----EKGVS--SWNALIIGFAM---NGLADKSLEMFSEMKKSGVTPNEIT-FVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 481 ~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 549 (798)
+++++.-. ++|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887544 34432 22333333221 2345556655555554 6788763 44445788999999999999
Q ss_pred HHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 550 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
++.+-+ .+|.+...... .+.+.|+- +.+-+++. .++| +..+.-.+..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999854 46666554332 34455542 22222222 3345 4667777888888999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 003746 625 QPDHDGFHVLLSNIHASK-GRWDDVLEVRGMMVR 657 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 657 (798)
.|.. .+|.+|+++-... |+-.++...+.+..+
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 9986 6788898887655 998888888776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00053 Score=52.53 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.|++++|.++|+++ ...| +..++..+..+|.+.|++++|...++++....|+++.++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44455555555444 1122 444455555555555555555555555555555554444333
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0009 Score=53.83 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEA 582 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 582 (798)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..++++ .+ ..|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665322 11233344455666666666666666655 11 2222 22222345555666666666
Q ss_pred HHHHHh
Q 003746 583 EELIES 588 (798)
Q Consensus 583 ~~~~~~ 588 (798)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0079 Score=55.96 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGC 568 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 568 (798)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566666666667777777777777665422221 12555666666666777777766666654 2332 334444
Q ss_pred HHHHHH
Q 003746 569 MVDLLG 574 (798)
Q Consensus 569 l~~~~~ 574 (798)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.071 Score=52.65 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=104.1
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCcc------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGVS------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH- 539 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 539 (798)
....+.+.|++++|.+.|+.+....+. ..-.++.+|.+.+++++|+..|++..+....-..+.+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877654321 2234566777888888888888888774222122344444433321
Q ss_pred -cC---------------c---HHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003746 540 -MG---------------L---VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600 (798)
Q Consensus 540 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 600 (798)
.+ + ..+|...|+.+++++ |+ ..-..+|...+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 233445555554432 32 223344444333331000000 113
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..-|.+.|++.-|..-++.+++--|+.+ .....+..+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45567888999999999999999888754 456678899999999999999887664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00031 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=63.64 Aligned_cols=256 Identities=12% Similarity=0.045 Sum_probs=145.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcccchhHHHHHHHHHH--Hc--CCC-CcHHHHhHHHhhH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDE----ATLVSVISACTHLVALDQGKWIHAYIR--KN--GLK-INSILGTTLIDMY 471 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li~~~ 471 (798)
+++.|+.+..+.+|+...+.|- -|. ..|..+-++|.-.+++++|.++|..=+ .. |-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5666777777777776666552 232 234444556666667777766654311 10 100 0111222233334
Q ss_pred HhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH--
Q 003746 472 MKLGCVDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGL--------------------ADKSLEMFSEMKK-- 520 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~-- 520 (798)
--.|.+++|...-.+-.. + ....+-.+...|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666544322110 0 11234445555544432 2344455544222
Q ss_pred --CCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH---HHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----
Q 003746 521 --SGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSM---IQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM---- 589 (798)
Q Consensus 521 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 589 (798)
.|-. .-...|..|...|.-.|+++.|+..++.- .+++|-.. ....+..+.+.+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 01124555666666678899998876653 23444333 2456778888888999999999888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 590 ---PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVEL----Q--PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 590 ---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+- .....+..+|.+.|....+++.|+..+.+=+.+ + -.....+..|+++|...|..+.|..+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 123456678888888888899998887665542 1 22345677899999999999999887765543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.23 Score=50.55 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCcCC--cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-----NEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPN--SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 564 (798)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45566777888899999999998887643322 121 23444446667788989999888875321 22222 23
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 003746 565 HYGCMVDLLGR--AGMLKEAEELIESMP 590 (798)
Q Consensus 565 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 590 (798)
....|++++-. ...+++|..-|+++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44555666643 346777777777773
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0046 Score=61.50 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSN 637 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 637 (798)
|..-+..+.+.|++++|...|+.. ...|+ ..++..+...|...|+++.|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333344444445555555555554 11222 2344556666666666666666666666665553 334444566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003746 638 IHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777766666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.17 Score=51.25 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=120.6
Q ss_pred cCCHHHHHHHHhhcC---CCCcchHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHH
Q 003746 474 LGCVDNALEVFHGTE---EKGVSSWNALIIG--FAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a 546 (798)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -+..|.-.-.+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544322 2343333333333 2346888888888888876 23222 233444444677888888
Q ss_pred HHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHH--HHHHHHHH---HHcCChhHHHH
Q 003746 547 HRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM----PMSPDVAT--WGALLGAC---KKHGDHEMGER 616 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~--~~~l~~~~---~~~g~~~~A~~ 616 (798)
.++-+..- +..|. .-.....++..+..|+++.|+++.+.- .++++..- --.|+.+- .-..+...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888774 45565 556778888889999999999998765 23454331 22233322 22356778888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..++.|+-...-+.-+.+|.+.|+..++-++++.+.+...
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 88999999999888888888899999999999999998877543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.061 Score=54.79 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHH
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM-GLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLL 573 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 573 (798)
+..|...|++..|-..+.++-+ .|... |++++|.++|++..+-+.-... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444444322 34444 5566666666655443211111 33445566777
Q ss_pred HhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 574 GRAGMLKEAEELIESMP---MS-----PDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
.+.|++++|.++|++.. .. .+.. .+-..+-.+...||...|.+.+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 78888888888877651 11 1111 122233345566888888888888888877543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.14 Score=46.31 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHH
Q 003746 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL-EPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVAT 597 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 597 (798)
..|+...-..|..+....|+..||...|++... |+ .-|....-.+.++....+++.+|...+++. ..+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 466666667777888888888899888888764 44 335677777788888888888888888876 2122 2223
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.-.+...+...|+++.|+..|+.++...|+. ..-...+..+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4456778888999999999999999988874 4455666788999998888776665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0013 Score=50.47 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCC
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG-DHEMGERVGRKLVELQP 626 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 626 (798)
+..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455667777788888888888888776 3445 5668888888898988 79999999999998887
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.054 Score=57.96 Aligned_cols=90 Identities=9% Similarity=0.075 Sum_probs=65.1
Q ss_pred HhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003746 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383 (798)
Q Consensus 304 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 383 (798)
+.+...+..|.++|..+-. ...++++....+++++|.++-++.++--...|-....-++...++++|.+.|
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 3344445555555554432 2467888899999999999999877766666666677777888888887665
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003746 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420 (798)
Q Consensus 384 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 420 (798)
. +.|+-.||.++++++...
T Consensus 828 h------------------kAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 H------------------KAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred H------------------HhcchHHHHHHHHHhhhh
Confidence 4 678889999999887654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.71 Score=48.00 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=51.7
Q ss_pred CCCChhHHHHhhhcCCC---CC------cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccC
Q 003746 77 PFIEMSYSFKIFAFLES---PN------GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA--SALRL 145 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a--~~~~~ 145 (798)
+.+++.+|.++|.++-. .+ .+.-+.+|++|..++-.. -........+. .| ...|..+..+ +-+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~-Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDL-MEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHH-HHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 55666666666665532 11 223445566665543222 11222222211 12 3344444444 23455
Q ss_pred ChHHHHHHHHHHHHh--CC------------CCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 003746 146 SVFEGKLIHDHVLKA--GF------------DSDVYVNNTLINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 146 ~~~~a~~~~~~~~~~--g~------------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 193 (798)
.+..|.+.+..-... +. -+|-+.-+..++.+...|++.+++.++++|.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 566665555544333 11 1223333445555566666666666655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.019 Score=51.07 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=21.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
.-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|...
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444443 233322 2333333334444444444444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.004 Score=64.87 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|+.+..+|...|++++|+..|+++++++|++... |+.++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777777776633 666777777777777777776666653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.74 Score=47.87 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHhcCc-HHHHHHHHHHHHHhCCCcC-CcchHHHHHH----HHHhc---C---CHHHHHHHHHhCCCCC----CHHHHHH
Q 003746 537 CRHMGL-VDEGHRHFNSMIQEHRLEP-NSKHYGCMVD----LLGRA---G---MLKEAEELIESMPMSP----DVATWGA 600 (798)
Q Consensus 537 ~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~----~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ 600 (798)
+.+.|. -++|.++++.+.+ +.| |...-|.+.. .|..+ . ++=+-+.++++.++.| +...-|.
T Consensus 389 lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445555 7777888877754 333 3333332221 12111 1 1223344455666555 3345555
Q ss_pred HHHH--HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGA--CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
|..| +..+|++.++.-...-+.++.| .+.+|.++|-......++++|..++..+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 6555 3578999999988888889999 67899999999999999999999998653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=50.38 Aligned_cols=87 Identities=18% Similarity=0.090 Sum_probs=57.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 003746 569 MVDLLGRAGMLKEAEELIESM---PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPD---HDGFHVLLSNIHA 640 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 640 (798)
+..++-..|+.++|..+|++. +.... ...+-.+...++..|++++|..++++.++..|+ +......++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666655 22211 235556777777888888888888888777777 5556666667777
Q ss_pred hcCChhHHHHHHHHH
Q 003746 641 SKGRWDDVLEVRGMM 655 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m 655 (798)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888887776443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.026 Score=50.82 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=92.6
Q ss_pred HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-
Q 003746 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD- 627 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 627 (798)
+..++....|++.+--.|...+.+.|+..||...|++. .+-.|....-.+.++...-++...|...++++.+-.|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344456788888889999999999999999999987 45568888889999999999999999999999998875
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 628 -HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 628 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.+....+++..|...|+.++|+.-|+-..+.-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678889999999999999999999887643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.77 Score=47.20 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=73.9
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
+.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-.++-|-.++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455667788888887777777777888888888888888776654332 223467777888888888888887
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
.+..++ .+..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 776552 2245677788888888887765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.15 Score=52.78 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=103.7
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC---Ccc----hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK---GVS----SWNALIIGFAM---NGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
|+-.|-...+++.-.++++.+... ++. .-....-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344577777788888887777653 111 11123344445 78889999999886666667777788777666
Q ss_pred HHh---------cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH----HHHHH---HhC-----C--CCC
Q 003746 537 CRH---------MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE----AEELI---ESM-----P--MSP 593 (798)
Q Consensus 537 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~--~~p 593 (798)
|-. ....++|...|.+. +.+.|+..+--.++.++...|...+ ..++- ... . -..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 23477788888766 4566776555455555555554222 22222 111 1 124
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
|-..+.+++.++.-.|+.+.|.+.+++++.+.|..-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 555668899999999999999999999999987754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0044 Score=48.15 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
-..|.+.+++++|.++++++ ...| +...|......+...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35678888999999998887 4445 56778888889999999999999999999999988765443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.038 Score=47.36 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL 573 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 573 (798)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..++++...++.-.+ +......+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999998876653 3567777888999999999999998877532211 122223344567
Q ss_pred HhcCCHHHHHHHHHh
Q 003746 574 GRAGMLKEAEELIES 588 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~ 588 (798)
...|+.++|.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.27 Score=52.93 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHHHHhccCchHHHHHH--HHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 003746 298 VSVLSACANLTVVKAGTSV--HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375 (798)
Q Consensus 298 ~~ll~a~~~~~~~~~a~~i--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (798)
...-.+|.+..++.--+-+ ++.+.+.|-.|+... +.+.++-.|++.+|-++|. ++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCc
Confidence 3334444444444433322 344555565565443 3344555567777777665 5555
Q ss_pred HHHHHHHHHhc
Q 003746 376 VEKARALFDAM 386 (798)
Q Consensus 376 ~~~A~~~~~~m 386 (798)
-..|.++|..|
T Consensus 661 enRAlEmyTDl 671 (1081)
T KOG1538|consen 661 ENRALEMYTDL 671 (1081)
T ss_pred hhhHHHHHHHH
Confidence 56666666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0025 Score=43.66 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
.+|..+..+|...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988877753
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.02 Score=58.06 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR-AGMLKEAEELIESM--PMSPDVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 604 (798)
.+|..++..+.+.+.++.|+.+|.++.+.. ..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888889999999999997532 2245566666666444 56667799999988 445678899999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...++.+.|..+|++++..-|.+. ..|......=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 46777777778889999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=46.44 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccc--------chhHHHHHHHHHHHcCCCCcHHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLV--------ALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
|-...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566667777999999999999999999 999999999999887653 23455778899999999999999
Q ss_pred HhHHHhhHHh
Q 003746 464 GTTLIDMYMK 473 (798)
Q Consensus 464 ~~~li~~~~~ 473 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887665
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.26 Score=47.15 Aligned_cols=136 Identities=8% Similarity=0.031 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-----CCCcHHHHhHHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-----LKINSILGTTLI 468 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li 468 (798)
-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.|+.+.+...++...+.. ......+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 355666677777888888888888876656677777778888888888888888888776653 233333333344
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 531 (798)
..|.-..++..|...|.+++..| ++.-|.-.-+..-.|+..+|++..+.|... .|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45666778888888888877654 555555555555678889999999999874 55544433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.6 Score=48.40 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chHHHHHHHHHhhcC---CHHHHHHHHhcCCC--CCcccHHHHHHHHH
Q 003746 199 SWNSILAGYVNADNVEEAKFIYNKMPERN---IIASNSMIVLFGRKG---NVAEACRLFKEMPK--KDLVSWSALISCYE 270 (798)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~y~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 270 (798)
+-..+|.-++..+.+..|+++-..+..+. ..++.....-+.+.. +-+-+..+=+++.. ..-++|..+.+-..
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 34456778888899999999988887765 566666666666653 33334444455555 46788999998888
Q ss_pred hcCChhHHHHHHHH
Q 003746 271 QNEMYEEALVLFMN 284 (798)
Q Consensus 271 ~~g~~~~A~~l~~~ 284 (798)
+.|+.+-|..+++.
T Consensus 519 ~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 519 QEGRFELARKLLEL 532 (829)
T ss_pred hcCcHHHHHHHHhc
Confidence 99999999888754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.02 Score=60.50 Aligned_cols=123 Identities=8% Similarity=0.052 Sum_probs=92.9
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 425 (798)
|.+..+.+......+++......+++.+..++.+.... -..|..++|..|.+.|..++++.+++.=...|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 44445555666666677666777888888887766432 123456899999999999999999999889999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 426 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+|++.++..+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988888776666666555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=46.20 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=68.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNNNV-GVDNYTYPLLAQASALRL--------SVFEGKLIHDHVLKAGFDSDVYV 168 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 168 (798)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++++.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777888999999999999999999 899999999999976543 23456789999999999999999
Q ss_pred HHHHHHHHHh
Q 003746 169 NNTLINMYAV 178 (798)
Q Consensus 169 ~~~li~~y~~ 178 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.032 Score=55.50 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 602 (798)
.|...+....+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....|..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556778888888887776532111 0245567788888888888888888777 2222 245666677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
..+...|+.+.|...++++++..|+...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7888899999999999999999998753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.8 Score=47.92 Aligned_cols=330 Identities=14% Similarity=0.096 Sum_probs=159.6
Q ss_pred hCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCCC-
Q 003746 124 NNNVGVDNYTYPL-----LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---LSAARKLFDESPV- 194 (798)
Q Consensus 124 ~~g~~~~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~- 194 (798)
+-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++.....-+.+..+ .+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4455555554443 3444555666777777766653322122 5677777777776632 2223333333333
Q ss_pred -CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCccc------HHHHHH
Q 003746 195 -LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS------WSALIS 267 (798)
Q Consensus 195 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~ 267 (798)
.+-++|..+..-..+.|+.+-|..+++.=...... +-.+.+.++.+.|..=--+-..+|.+. ++.+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q-----V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~ 578 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ-----VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR 578 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch-----hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 45567777777777788888887777654332111 111222233333332222222222211 111111
Q ss_pred H--HHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHH-----HhCCccchhHHHHHHHHHH
Q 003746 268 C--YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-----KIGIECYINLQNALIHMYS 340 (798)
Q Consensus 268 ~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-----~~g~~~~~~~~~~li~~y~ 340 (798)
+ +.-..+...|..+|.+..+.. |..+ +-..+....+......++-+.. ..|..|+ .....+.++
T Consensus 579 s~l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a 649 (829)
T KOG2280|consen 579 SSLFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFA 649 (829)
T ss_pred HHHHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHh
Confidence 1 111123444555555543321 1111 1111112222222222221110 0122222 222333333
Q ss_pred hCCCHH-------HHHHHH---Hh-----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 003746 341 SCGEIT-------TAEKLF---DA-----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405 (798)
Q Consensus 341 ~~g~~~-------~A~~~~---~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 405 (798)
+..... +-.+++ +. +..-.-.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 332211 111111 11 222233344455555567788888888888777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHH
Q 003746 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483 (798)
Q Consensus 406 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 483 (798)
++++-+++-+.+. .+.-|.....+|.+.|+.++|..++..... +.-.+.+|.++|++.+|.++
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 7777666554432 245566677777777777777776544311 11466777777777777665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=53.79 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CcHHHHH
Q 003746 489 EKGVSSWNALIIGFAMN-----GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM----------------GLVDEGH 547 (798)
Q Consensus 489 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 547 (798)
.++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555555555555433 55555666677777777777777777777765331 2445677
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
+++++| +.+|+-||.+++..+++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 788888 557888888888888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.074 Score=56.25 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc--CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC----CCcch
Q 003746 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN--GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE----KGVSS 494 (798)
Q Consensus 421 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 494 (798)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777777777777777777776666654 2222233445777777777777777777765443 45667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777766666777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.18 Score=48.26 Aligned_cols=169 Identities=9% Similarity=-0.018 Sum_probs=108.8
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCC--C--------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEK--G--------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 533 (798)
++.|...|.-...+++-...|+.-..+ . ...-+.++..+.-+|.+.-.+.++++.++...+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444444444444433221 1 224466777777788888889999999886655566667777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCC----cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHH
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRL----EPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SP-DVATWGALLGACKK 607 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~ 607 (798)
.+.-.+.|+.+.|..+|++..+..+. .-+.-+...+...|.-++++.+|...+++.+. .| |....|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 78888899999999999977654322 22222333344456667788888888877732 22 44555554445556
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchH
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
-|+...|++..+.+++..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 6888888888888888888755443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.3 Score=45.56 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 003746 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441 (798)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 441 (798)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-.++-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344445555777777888887777777777888888888888888776654321 2244777788888888888
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
..+|..+...+ + +..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 77777666551 1 245778899999999998763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.049 Score=55.66 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.++..|..+|.+.+++..|++...+.++++|+|.-..+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778888899999999999999999999999999999999999999999999999999863
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.2 Score=43.28 Aligned_cols=194 Identities=22% Similarity=0.222 Sum_probs=130.2
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEE-----KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
..........+...+.+..+...+..... .....+..+...+...+++.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45555666667777777777777666542 2344566666677777778888888887776433331 12222222
Q ss_pred -HHHhcCcHHHHHHHHHHHHHhCCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 003746 536 -ACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD--VATWGALLGACKK 607 (798)
Q Consensus 536 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~ 607 (798)
.+...|+++++...+.+... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888888743 223 2333444444566778888888888776 33333 5677788888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.++.+.|...+.++++..|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888999998888888875556666777777667788888887776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.081 Score=52.83 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=111.0
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHh-------hcCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH---H
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFH-------GTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNE---I 528 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~ 528 (798)
.++..++++.++.|.+++++..-- +..+.+ ..+|-.+..++-+..++.+++.+-+.-.. .|..|.. .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 344455555666666555543211 111111 23455555555555555555554443322 2333321 1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--cC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH--
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRL--EP--NSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPDV-- 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-- 595 (798)
...++..+....+.++++++.|+.+.+-..- .| ...+|..|...|++..++++|.-+..+. +++.-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 2333455666667788888888887653211 12 2467888888999888888876665443 322111
Q ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCC----cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 596 ---ATWGALLGACKKHGDHEMGERVGRKLVEL--QPDH----DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 596 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+...|..+++..|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 23344567888889888888888888653 3333 23344688899999988887766544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0076 Score=47.56 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVEL----QPD---HDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777888888888888888877753 222 244667788888888888888888877643
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.048 Score=50.95 Aligned_cols=98 Identities=11% Similarity=0.179 Sum_probs=71.4
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc------------
Q 003746 379 ARALFDAM--IEKDVVSWSTMISGYAQH-----DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL------------ 439 (798)
Q Consensus 379 A~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------ 439 (798)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 455677777777777654 55666666777888888888888888888776542
Q ss_pred ----cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 440 ----VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 440 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345678888889889999999998888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.065 Score=56.23 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+|.++.++. ...| |+.....+..+....++++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444443 2222 4555555555555555566666666666666666666666666666666666666666665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.098 Score=47.21 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=72.5
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP--NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
....|+.+.+...++++..-+.-++ +... ..-.....+.+++. -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677778877777765432211 2111 12222333333332 123566677888899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...+++++..+|-+...+..+..+|...|+..+|.++|+.+.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.31 Score=49.62 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=48.5
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcC-------CC--CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CCHHH
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTE-------EK--GVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVT-PNEIT 529 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t 529 (798)
|..|.+.|.-.|+++.|+..-+.-. .+ .-..+..+..++.-.|+++.|.+.|+.-.. .|-+ ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4445555555566666554433211 00 123556667777777788888777776432 2211 11224
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
..+|..+|.-...+++|+.++.+-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777776553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2 Score=44.61 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH-HHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-GCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 569 (798)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|.++|+.-+..+ ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3467777777777777888999999999888 5667777888887555 578888899998766542 454333 456
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 570 VDLLGRAGMLKEAEELIESM--PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.+.+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.++.|.....-
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~e 539 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHH
Confidence 67778899999999999865 22333 45788888888888999988888888888888764433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=3.3 Score=46.67 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=93.1
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 003746 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184 (798)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (798)
-+.+.|++++|..-|-+-... +.| ..+++-+.....+..-..+++.+.+.|+ .+..--+.|++.|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 345678888888877665521 122 2345555555566666778888888885 444556788999999999998
Q ss_pred HHHHHccCCCCCc-chHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC
Q 003746 185 ARKLFDESPVLDL-VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 185 A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 257 (798)
-.+..+....... .-....+..+-+.+-.++|..+-.+... +..+...+ +-..|++++|.+.+..++-+
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 8888776662211 1345566677777777777776655544 33333333 34568899999999888754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.5 Score=43.29 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-ATL---VSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
+-.....+.+.|++++|++.|+++... -|+. ... ..+..++.+.++++.|...++..++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444555667777777777776653 2222 111 22334455556666666666655554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2.9 Score=46.75 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCC-----chHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 003746 204 LAGYVNADNVEEAKFIYNKMPERN-----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278 (798)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (798)
|.-+.+.+.+++|++.-+.....- ..++...|+.+.-.|++++|-.+.-.|...+..-|-.-+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 444667777777777776665432 245667777777777888887777777777777777766666666665543
Q ss_pred H
Q 003746 279 L 279 (798)
Q Consensus 279 ~ 279 (798)
.
T Consensus 443 a 443 (846)
T KOG2066|consen 443 A 443 (846)
T ss_pred h
Confidence 3
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0088 Score=47.19 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-------P-MSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
.|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444455555555554444443 1 1122 446677777777777777777777777653
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.1 Score=45.22 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=124.3
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
++..+|..-++--.+.|+.+.+.-.|++..-+ =...|--.+.-....|+.+-|-.++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888999999999998877643 233455555555555888888877776655433333333222233
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAE---ELIESM-PMSPDVATWGALLG-----AC 605 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~ 605 (798)
-+...|+.+.|..+++.+.++ . |+ ...-.--+.+..+.|..+.+. +++... +.+-+..+...+.. .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456788999999999999875 3 65 444444567778899999888 555544 22233333333332 23
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
...++.+.|..++.++.+..|++...|..+.++....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999998888876665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.08 Score=44.70 Aligned_cols=90 Identities=21% Similarity=0.114 Sum_probs=72.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCC
Q 003746 571 DLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD----GFHVLLSNIHASKGR 644 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 644 (798)
-+++..|+++.|++.|.+. .+- .....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788899999888876 333 3678899999999999999999999999998754332 347778889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 003746 645 WDDVLEVRGMMVRRGV 660 (798)
Q Consensus 645 ~~~a~~~~~~m~~~~~ 660 (798)
-++|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.7 Score=44.81 Aligned_cols=148 Identities=14% Similarity=0.012 Sum_probs=90.6
Q ss_pred HhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh--hHHhcCCHHHHHHHHhhcCCCCcc---------------hHHHH
Q 003746 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLID--MYMKLGCVDNALEVFHGTEEKGVS---------------SWNAL 498 (798)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 498 (798)
+...++.++|.++-..+++..- ...+...++ ++--.++.+.|...|++...-|+. .|.-=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3566777777777766666531 112222222 233456777788777776643321 23333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKS---GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG 574 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 574 (798)
..-..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 44457788888888888888762 2334444566666677788888888887777643 4443 333333344555
Q ss_pred hcCCHHHHHHHHHhC
Q 003746 575 RAGMLKEAEELIESM 589 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~ 589 (798)
-.+++++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667888888888776
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.37 Score=50.77 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHH---------hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh
Q 003746 508 ADKSLEMFSEMKK-SGVTPNEI-TFVGVLGACR---------HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR 575 (798)
Q Consensus 508 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 575 (798)
.+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.+.-++.++ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4568888888872 23667654 3333332221 12345677777777765 455 57777778888888
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH--HHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL--LSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~ 651 (798)
.|+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-+. ..++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 89999999999998 56675 6678888888889999999999999999999986554443 33355554 46677766
Q ss_pred HH
Q 003746 652 RG 653 (798)
Q Consensus 652 ~~ 653 (798)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 54
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.4 Score=42.22 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=25.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRP--DEATLVSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
...+.+.|++++|++.|+++...-... -......+..++.+.|+.+.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566666666666555431110 1122223344444555555555555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.98 Score=43.34 Aligned_cols=142 Identities=8% Similarity=0.110 Sum_probs=74.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 574 (798)
.....+...|++++|++.|+++...-.... ......+..++.+.|++++|...+++.++.+.-.|.. -+.....+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344556667777777777777776421111 1244555666777777777777777776654333321 1111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch-----------------HHHHHH
Q 003746 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-----------------HVLLSN 637 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 637 (798)
.-..... .+ ......+....|...++.+++..|+++-. -..++.
T Consensus 89 ~~~~~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 00122234556777777777777776433 235678
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003746 638 IHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999988764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.7 Score=49.27 Aligned_cols=129 Identities=19% Similarity=0.309 Sum_probs=72.1
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHH
Q 003746 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321 (798)
Q Consensus 242 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 321 (798)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 56666666665554 334555555556677777777776 4666666555555432 111
Q ss_pred HhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHH--HHHHH
Q 003746 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVS--WSTMI 398 (798)
Q Consensus 322 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~~~li 398 (798)
+. .-++--.-+|.++|+.++|.+.++ .+|++.+|..+-.++... |... -..|+
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEGKDELVILAEELV 1006 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 11 112223446777777777765544 667777777777666543 3222 24555
Q ss_pred HHHHhCCChHHHHHHHHHH
Q 003746 399 SGYAQHDQFSETLSLFMEM 417 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m 417 (798)
.-+...+++-+|-++..+.
T Consensus 1007 s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHcccchhHHHHHHHH
Confidence 6666666666666555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=3.6 Score=48.33 Aligned_cols=156 Identities=16% Similarity=0.195 Sum_probs=92.5
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+. .+.+
T Consensus 895 ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~~ 951 (1265)
T KOG1920|consen 895 RYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLRE 951 (1265)
T ss_pred HHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHHH
Confidence 4555555554443 223333444444566666666664 5777777666655542 1111
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT--FVG 532 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ 532 (798)
.. .++-..-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... --.
T Consensus 952 ~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 952 EL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred hc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11 122334468888998888765 4567888888888777643 122221 245
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|..-+...++.-+|-++..+... . +.--+..|++...+++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66667777887777777766533 1 233566777888888888876665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=5.3 Score=43.96 Aligned_cols=214 Identities=12% Similarity=0.149 Sum_probs=106.5
Q ss_pred ChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHh----------hcCCHHHHHH
Q 003746 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFG----------RKGNVAEACR 249 (798)
Q Consensus 181 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~----------~~g~~~~A~~ 249 (798)
.+++|.+..+.-| .+..|..+.....+.-.++-|...|-+... +.+..-..|-.... --|++++|++
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 3566777666544 455687777776666666667666655432 11111111111111 1255555555
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccch
Q 003746 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329 (798)
Q Consensus 250 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 329 (798)
++-.|.++|. -|..+.+.|++-...++++.- |- ++-+ +.-.
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~-----------------d~dD--------------~~~e 796 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GS-----------------DDDD--------------EGKE 796 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CC-----------------Ccch--------------HHHH
Confidence 5555554442 233334444444433333210 00 0000 0012
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Q 003746 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409 (798)
Q Consensus 330 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 409 (798)
..++.+.+.++....+++|.+.+...... ...+.++.+..++++-+.+-..+++. ....-.|...+...|.-++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHH
Confidence 34566677777666777777766543221 12344455555555555555555443 2334456667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHH
Q 003746 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450 (798)
Q Consensus 410 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 450 (798)
|.+.|-+- + .| ...+..|...+++.+|.++-+
T Consensus 871 AV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 871 AVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 77666432 1 12 234556666666666655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=37.65 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
-.|..++..++..+.... .+..-++-++--....-+=+-..+.++.+-+-+.+ ..+|.+....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356666677777666542 12333444443333333333344444444222222 2344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 584 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
..+-.++ .+......-+.....+|+-+.-.+++..+.+-+..+|.+.+-++++|.+.|...++.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444442 233344556677888899999999999988766667889999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.15 Score=44.19 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc-----------------CCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-----------------PNSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-----------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
|..++..++.++++.|+++....+.+.. +|+. |+..+..+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3456666777777777777766666543 3443 4444444444444444444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.38 Score=50.72 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 584 (798)
..+.+.-+++-++..+ +.||-.+-..++ +-....-+.++.+++++.++... ..+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchh-hhhhcccc---hhh
Confidence 4445555566666665 566654433333 33344567888888888765310 000000 00001111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003746 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662 (798)
Q Consensus 585 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 662 (798)
.+.+-...|-..+=..|..++++.|+.++|++.++++++..|. +......|...+...+++.|+..++.+--+....|
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222334456777778889999999999999877664 45567788889999999999998888765433333
Q ss_pred CCccceE--EECCEEEEEEeCCCCCcCh-------HHHHHHHHHHHHHHHHcCCCCCCcc
Q 003746 663 IPGCSMI--EANGIIHEFLAGDRTHPQI-------NEIDNMLDEMAKKLKLEGYAPDTLE 713 (798)
Q Consensus 663 ~~~~s~i--~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~~~~~g~~~d~~~ 713 (798)
....+|. .++- =..+|+..|+. ......++-+.+-++..+++|+-..
T Consensus 329 SAti~YTaALLka----Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 329 SATICYTAALLKA----RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hHHHHHHHHHHHH----HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 2222221 1110 01222222221 1122345566666777788876543
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=51.47 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=95.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
...|.+.|++..|...|++.... -+ +...-+.++..... ..-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876541 00 01111112222111 1123456678888899999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHHH
Q 003746 579 LKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV-LEVRGMM 655 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 655 (798)
+.+|++.-++. ..+ +|.-...-=..+|...|+++.|+..|+++++++|+|-.+..-|..+-.+..+.++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 46777777788999999999999999999999999988888887666665555544 6778888
Q ss_pred Hh
Q 003746 656 VR 657 (798)
Q Consensus 656 ~~ 657 (798)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.1 Score=43.23 Aligned_cols=189 Identities=16% Similarity=0.141 Sum_probs=101.5
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHH--
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVTPNEITF-- 530 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~-- 530 (798)
++..++.-.+.++++++.|+...+ + ....+-.|.+.|.+..++++|+-+..+..+ .++.--..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355555566667777777765432 1 134677777778888888877766655433 2222111122
Q ss_pred ---HHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C----C--C-CCH
Q 003746 531 ---VGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P----M--S-PDV 595 (798)
Q Consensus 531 ---~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~--~-p~~ 595 (798)
..+.-++...|.+..|.+.-++..+- .|-.| ......++.|.|-..|+.|.|..-++.. + . + -..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22334566677777777777766442 23223 1444567888898899888887777654 1 1 0 012
Q ss_pred HHHHHHHHHHHHcC-----ChhHHHHHHHHHHhcC----CCC--cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 596 ATWGALLGACKKHG-----DHEMGERVGRKLVELQ----PDH--DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 596 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~----p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+...+........ .--.|+++-++++++. -.. -..+..++.+|...|.-++-..-+..
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 22222222222111 1123555555555432 111 12345678888888877665544433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.56 Score=46.38 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG---MLKEAEELIESM-PMSP-DVATWG 599 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~ 599 (798)
|...|..|..+|...|+.+.|..-|....+ +.| +...+..+...+.... .-.++.++|+++ ..+| |..+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 344677777777777777777777777754 344 3555666665544322 345677777777 4455 566677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.|...+...|++.+|...++.|++..|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7778888899999999999999987776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.29 Score=42.90 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCC
Q 003746 573 LGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHASKGR 644 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 644 (798)
..+.|++++|.+.|+.+ |..| ...+--.|+.++.+.+++++|...+++.+++.|.++.+ +...+-++.....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 44567777777777766 2222 23445567788888888888888888888888876543 3333333444333
Q ss_pred ---------------hhHHHHHHHHHHhC
Q 003746 645 ---------------WDDVLEVRGMMVRR 658 (798)
Q Consensus 645 ---------------~~~a~~~~~~m~~~ 658 (798)
..+|..-|+.++++
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 45666666666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=54.62 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV----ATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666777777777777777777664 555553 34777777777777777777777777776
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=49.00 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|..++...|+++.|...|..+.+-.|+. +..+.-|+.+..+.|+.++|..+++.+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4555555555555555555555443332 33445555555555555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=4.1 Score=39.38 Aligned_cols=195 Identities=17% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHH-HHH
Q 003746 429 LVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALII-GFA 503 (798)
Q Consensus 429 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~-~~~ 503 (798)
.......+...+.+..+...+...... ........+..+...+...+.+..+.+.+......+ ...+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444444331 223334444455555666666777777776655422 122333333 688
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC
Q 003746 504 MNGLADKSLEMFSEMKKSGVTP----NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 578 (798)
..|+.++|...|.+... ..| ....+......+...++.+++...+....+. ... ....+..+...+...|+
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 88999999999988855 333 2234444444567788999999999988763 223 36778888888999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 579 LKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+++|...+... ...|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998877 33444 555666666666777899999999999998887
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.066 Score=33.90 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888888999999999999999988875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.049 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888889999999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.2 Score=48.19 Aligned_cols=129 Identities=17% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 003746 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279 (798)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (798)
.+.++.-+-+.|..+.|+++-..- ..-.++..++|+++.|.++.++.. +...|..|.....++|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 455555555566666665553321 223445567788888888887766 5668999999999999999999
Q ss_pred HHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHH
Q 003746 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353 (798)
Q Consensus 280 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 353 (798)
+.|++... |..++-.+...|+.+.-.++.......|- +|.....+.-.|++++..+++.
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99988754 55565566666777766666666665542 2333334443455555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.5 Score=38.76 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC--cchHHHHHHHHHHcCChHH
Q 003746 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG--VSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 433 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 510 (798)
-.++-...+++++...+....+. .+.+...+ -....++.|.-+.+++.+-+ +..++--...|..+|.++.
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34555666677776655554432 11111111 11233455555555555433 3356666777888888887
Q ss_pred HHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----CcCCcchHHHHHHHHHhcCCHHHHHH
Q 003746 511 SLEMFSEMKK--SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----LEPNSKHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 511 A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~ 584 (798)
|-..+++.-+ .++.|+ +|++++++...... ..--...|......|.+..+++||-.
T Consensus 110 AAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7776666443 224444 44444444322110 01113445556677788888888877
Q ss_pred HHHhCC-----C--CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHh----cCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 585 LIESMP-----M--SPDV-ATWGALLGACKKHGDHEMGERVGRKLVE----LQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 585 ~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
.|.+-. . -|+. ..+-+.+-.+.-..++..|++.++..-+ ..|++..+...|...| ..|+.|++.++.
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 766542 1 1222 2344445555566788888888888654 3566666677776664 568888877665
Q ss_pred H
Q 003746 653 G 653 (798)
Q Consensus 653 ~ 653 (798)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.5 Score=39.28 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGV-TP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
.|-.=+..-.+.|++++|.+.|+.+..... .| ...+...++.++-+.++.++|....++.++.++-.|++. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 333344445566666666666666665311 11 123455555566666666666666666666555444432 222222
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc-----------------hHH
Q 003746 572 LLGRAGMLKEAEELIESMP-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-----------------FHV 633 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~ 633 (798)
++. .|...+ ...|. .-...|...|+++++..|+..- .-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 222 111111 00111 1123445555556666665432 234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+++.|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6788899999999999999999875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.1 Score=39.45 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPN---EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 577 (798)
...+.|++++|++.|+.+...= +.. ...-..++.++.+.|++++|...+++.++-+.-.|+ ..|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 3445566666666666655531 111 123444555555666666666666665543222222 23333333333222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 578 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..+.++.-+- +.+.|. +....|...|+++++..|++.
T Consensus 97 ~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 2111111111 111111 235688888999999999874
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=45.05 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=65.4
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
..++..++-++++.|+++....+++..-.-|+.. -...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666777777777777777766543322110 000000 112345789999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 572 (798)
|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999989877777777776653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.37 Score=46.97 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 602 (798)
.|...+. +.+.|++.+|..-|...++.|.-.+ ....+-.|...+...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3355678888888888777542221 2444556888888888888888887776 3333 245666777
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.+....|+.++|...++++.+..|+.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77888889999999999999888887653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.1 Score=44.57 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--H--HHHHhcCcHHHHH
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV--L--GACRHMGLVDEGH 547 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~a~ 547 (798)
|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... -.||...|..+ + -++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 24444554445555555555555555544432 12333211111 1 1223444555555
Q ss_pred HHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 548 RHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 548 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+.-++..+ +.| |.-.-.++...+...|+.+++.++..+-
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44444432 222 2223333444444455555555554443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.3 Score=44.77 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 571 DLLGRAGMLKEAEELIESM-P-MSP-----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
+-+.+.|++++|..-|..+ . .++ ..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4456778888888777665 1 111 23345555667788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 003746 644 RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 644 ~~~~a~~~~~~m~~~~~ 660 (798)
++++|++-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999987544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.8 Score=37.26 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHH
Q 003746 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215 (798)
Q Consensus 136 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 215 (798)
.++..+...+........++.+++.+ ..+....|.++..|++.+. ......+.. ..+......++..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444444555555555555554 3455566666666665532 333343431 2233444445555666666666
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhhc-CCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 003746 216 AKFIYNKMPERNIIASNSMIVLFGRK-GNVAEACRLFKEMPKKDLVSWSALISCYE 270 (798)
Q Consensus 216 A~~~~~~m~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 270 (798)
+.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 88 ~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 88 AVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 6666555422 11122222222 5566666666552 24445666555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.5 Score=41.79 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=85.7
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA---LLGACKKHGDH 611 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 611 (798)
.....|+..++...|+..... .| +...--.|+..|...|+.++|..++..+|.+-...-|.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888999988888663 33 466777889999999999999999999975544444433 22333333333
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.. .+++-+..+|+|...-+.|+..|...|+.++|.+.+=.+..+
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3322 234445679999999999999999999999999987666544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.29 Score=47.29 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=76.8
Q ss_pred HHHHHhhcC--CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 003746 480 ALEVFHGTE--EKGVSSWNALIIGFAMN-----GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG----------- 541 (798)
Q Consensus 480 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 541 (798)
....|.... ++|-.+|-+++..+..+ +..+--...++.|.+.|+.-|..+|..||..+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 56777888888887654 455666667888999999999999999998765432
Q ss_pred -----cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCH
Q 003746 542 -----LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 542 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 579 (798)
+-+=++.++++| +..|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 233478899999 5689999999999999999998864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.8 Score=46.06 Aligned_cols=115 Identities=18% Similarity=0.067 Sum_probs=83.9
Q ss_pred cCcHHHHHHHHHHHHHhCCCcCCcchHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCChh
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEAEELIESMPM-S-----PDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 612 (798)
....+.+.++++.+.++ -|+...|.. -...+...|++++|.+.|++.-. + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45788899999998764 366555543 34667789999999999997521 1 13345566777888899999
Q ss_pred HHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCCh-------hHHHHHHHHHHh
Q 003746 613 MGERVGRKLVELQPDHDGFHV-LLSNIHASKGRW-------DDVLEVRGMMVR 657 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 657 (798)
+|.+.+.++.+...-...+|. ..+-.|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999987665444444 556667788988 888888877754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.4 Score=45.07 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM--SPD--VATWGALLGACK 606 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~~~~ 606 (798)
..+..++.+.|+.+||.+.|+++++++.......+...|+..|...+.+.++..++.+... -|. ...|+..+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456667788999999999999987643222355667889999999999999999888731 133 334555444444
Q ss_pred HcCCh---------------hHHHHHHHHHHhcCCCCcch
Q 003746 607 KHGDH---------------EMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 607 ~~g~~---------------~~A~~~~~~~~~~~p~~~~~ 631 (798)
..++. ..|.++..++++.+|..+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 33331 23567889999988876654
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.043 Score=49.38 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHH
Q 003746 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215 (798)
Q Consensus 136 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 215 (798)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777788888888777667789999999999999988888888874443 444567777788888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 003746 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274 (798)
Q Consensus 216 A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 274 (798)
|.-++.++...+.. +..+.+.++++.|.+.+.+. .|...|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 88777665321110 00122223333444333332 256677777777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.27 E-value=18 Score=41.13 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcC
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 643 (798)
++..+.+..+.+++..+.+..+.. |+..|-.+++-+.+.+..+.-.+...+.++ +.-++...-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 445566677778888887777533 777888888888888876666665555553 22222222233445555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.67 Score=41.69 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCcCCcc
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ----EHRLEPNSK 564 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 564 (798)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+++.+ +.|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344555555666666666666666531 22344566666666666666666666655432 345555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.98 E-value=6.5 Score=39.00 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCC
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGM 578 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 578 (798)
......|+..+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhc
Confidence 34456677777777777776642 112334555667777788888888777765321 1111 1112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChh-HHHHHHHH
Q 003746 579 LKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLSNIHASKGRWD-DVLEVRGM 654 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~-~a~~~~~~ 654 (798)
..+..++-.+..-.| |...-..+...+...|+.+.|.+.+-.++.. .-++...--.|..++...|.-+ .+.+++++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555553345 5666667777777888888887777666653 3345556666666666666333 34445554
Q ss_pred H
Q 003746 655 M 655 (798)
Q Consensus 655 m 655 (798)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.5 Score=47.27 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=82.9
Q ss_pred HHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCH
Q 003746 501 GFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 579 (798)
.....|+++++.++.+.-. -..+ | ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677777666554111 1111 1 33466677777788888888876544322 34566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 580 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.|.++.++. ++...|..|......+|+++.|++.+++.- -+..|.-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988887765 477789999999999999999888888863 24556667888888877777766666555
Q ss_pred C
Q 003746 660 V 660 (798)
Q Consensus 660 ~ 660 (798)
-
T Consensus 404 ~ 404 (443)
T PF04053_consen 404 D 404 (443)
T ss_dssp -
T ss_pred C
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.94 Score=43.99 Aligned_cols=111 Identities=8% Similarity=0.116 Sum_probs=80.7
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----------
Q 003746 378 KARALFDAMI--EKDVVSWSTMISGYAQH-----DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV---------- 440 (798)
Q Consensus 378 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------- 440 (798)
..++.|...+ ++|-.+|-+++..|... +..+=.-..++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56777777777776554 456666667788999999999999999998765532
Q ss_pred ------chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH-HHHHHHHhhcC
Q 003746 441 ------ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV-DNALEVFHGTE 488 (798)
Q Consensus 441 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 488 (798)
.-+-+..++++|...|+.||-.+-..|++.+++.+.. .+..++.--|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2344778899999999999999999999999988764 33334433333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.1 Score=44.57 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH----HHHhcCCH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD----LLGRAGML 579 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~ 579 (798)
.+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...+++++.. ..|+...|..+-. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999875 5566677777778999999999999999988753 3566655554443 44589999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH----DGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
++|++.-++. .+.| |...-.++...+...|++.++.+...+-.....+. .-.|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 56666788888889999999999887765543321 1123345556777899999999997
Q ss_pred HHHhCCCccCCcc
Q 003746 654 MMVRRGVVKIPGC 666 (798)
Q Consensus 654 ~m~~~~~~~~~~~ 666 (798)
.=.-....|..++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 7654445555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=4.1 Score=36.78 Aligned_cols=84 Identities=10% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
+.+.|++++|..+|+-+... .|... -+..|..+|-..+++++|...|.....- . .-|+..+--....|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34455555555555555442 22222 2333444444455666666655554321 1 112222223455555566666
Q ss_pred HHHHHHHhC
Q 003746 581 EAEELIESM 589 (798)
Q Consensus 581 ~A~~~~~~~ 589 (798)
.|+..|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666655554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=12 Score=36.54 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=105.2
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 003746 471 YMKLGCVDNALEVFHGTEEKGV------SSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRH---M 540 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~---~ 540 (798)
-.+.|++++|.+.|+.+..+.+ .+--.++-++-+.+++++|+...++....- -.|| +.|..-|.+.+. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 3467999999999998886532 244556777889999999999999988742 3333 344444444332 1
Q ss_pred ----Cc---HHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCh
Q 003746 541 ----GL---VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW--GALLGACKKHGDH 611 (798)
Q Consensus 541 ----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~ 611 (798)
.+ ..+|..-|+..+.++ |+.. --.+|..-+... .|.... ..+..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKL---NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCh
Confidence 12 233444444444432 3321 112222222211 011111 2355678889999
Q ss_pred hHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 612 EMGERVGRKLVELQPDHDG---FHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
..|..-++.+++.-|+... .+..+..+|...|..++|.+.-+-+...-
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 9999999999988776544 45567788999999999999888776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.4 Score=45.38 Aligned_cols=128 Identities=20% Similarity=0.145 Sum_probs=82.6
Q ss_pred hHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchH
Q 003746 494 SWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHY 566 (798)
Q Consensus 494 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~ 566 (798)
.|..++..+.. ....+.|.++++++... -|+..-|...- ..+...|++++|.+.|++......--|. ...+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444433 35677888999988873 78877665544 4566789999999999976531111122 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHH-HHcCCh-------hHHHHHHHHHHh
Q 003746 567 GCMVDLLGRAGMLKEAEELIESMP-MS-PDVATWGALLGAC-KKHGDH-------EMGERVGRKLVE 623 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~ 623 (798)
--+...+.-.+++++|.+.|.++. .. .+..+|..+..+| ...|+. ++|.++++++-.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456667888999999999999883 22 2344555555555 456777 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.96 E-value=8.5 Score=34.14 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=18.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 539 (798)
.++..+...+.......+++.+...+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444431 233344444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.26 Score=31.13 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888888888888888888888874
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.55 E-value=20 Score=37.66 Aligned_cols=148 Identities=8% Similarity=0.002 Sum_probs=81.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCcCCcchH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP---NEITFVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHY 566 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 566 (798)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++..++. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34578888899999999999999988887743222 2233444455566778888998888887662 1111111111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 567 GCMVDLLGRAGMLKEAEEL-IESMPMSPDVATWGALLGACKKH------GDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
..+...+.. ..+..... ........-..++..+..-+... ++.+.+...|+++.++.|+....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7888999999999999998887777777654
Q ss_pred H
Q 003746 640 A 640 (798)
Q Consensus 640 ~ 640 (798)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=9.1 Score=36.01 Aligned_cols=161 Identities=18% Similarity=0.125 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
...+|-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|++.-|.+-|...-+ -.|+-..-...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 346777777778888888888888887774 3332 2332223334456777777765554433 233321111111
Q ss_pred HHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhc
Q 003746 571 DLLGRAGMLKEAEELI-ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLSNIHASK 642 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 642 (798)
-.-.+.-+..+|..-+ ++.. ..|..-|...+..+.- |++.+ +.+++++.+-..++ ..+|..|+.-|...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1222344566666544 3332 3455566655554433 22111 12333333322222 34688899999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 003746 643 GRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~~ 660 (798)
|..++|..+|+......+
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999999887654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.17 E-value=13 Score=37.76 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--c----cchhHHHHHHHHHHHcCC---CCcHHHHhHHHhhHHhcCCH
Q 003746 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTH--L----VALDQGKWIHAYIRKNGL---KINSILGTTLIDMYMKLGCV 477 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 477 (798)
+++.+.+++.|.+.|++-+..++.+.+..... . .....+..+|+.|.+... .++...+..|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888887777664433322 1 123345556666655421 1222222222211 11111
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCc--HHHHHHHHHHH
Q 003746 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRH-MGL--VDEGHRHFNSM 553 (798)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~~ 553 (798)
+. -.+++...|+.+.+.|+..+.. .+.+-+-++.. ... +.++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245667788888878766654 34333333332 222 44677788888
Q ss_pred HHhCCCcCCcchHHHHHHHH
Q 003746 554 IQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 554 ~~~~~~~p~~~~~~~l~~~~ 573 (798)
.+ .|+++...+|..++-+-
T Consensus 209 ~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HH-cCCccccccccHHHHHH
Confidence 55 58888888887665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.99 E-value=15 Score=35.28 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003746 99 FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178 (798)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (798)
|-.-..+|-...+++.|...+.+..+ +.+-|...|.. .+ ..+.|..+...+.+. +.-+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-AK------ayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-AK------AYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-HH------HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33334455566667776666555542 12222222221 11 233444444444432 2334456666777777
Q ss_pred cCChHHHHHHHcc
Q 003746 179 CGDLSAARKLFDE 191 (798)
Q Consensus 179 ~g~~~~A~~~f~~ 191 (798)
+|..+.|-..+++
T Consensus 104 ~GspdtAAmaleK 116 (308)
T KOG1585|consen 104 CGSPDTAAMALEK 116 (308)
T ss_pred hCCcchHHHHHHH
Confidence 7777766655554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.98 E-value=3.9 Score=34.92 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGML 579 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 579 (798)
.+..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|+.-+++.++-.|-... ...|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44555555666666555542 1123345555566666666666666655555543232211 11222233345555666
Q ss_pred HHHHHHHHhC
Q 003746 580 KEAEELIESM 589 (798)
Q Consensus 580 ~~A~~~~~~~ 589 (798)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 6665555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.38 Score=30.99 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
|..|...|...|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.47 E-value=11 Score=34.43 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhC--CCHHHHHHHHhhCCCCCchH
Q 003746 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA--DNVEEAKFIYNKMPERNIIA 230 (798)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~ 230 (798)
....+.+.|++++..++..+++.+.+.|++..-..++.--.-+|.......+-.+... .-..-|++++.++.. .
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~----~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT----A 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----h
Confidence 3344445666777777777777777777776666666554434433222222211111 012233333433321 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 003746 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282 (798)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 282 (798)
+..++..+...|++-+|.++.+....-+.+.-..++.+-.+.++..--..+|
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 2233444445555555555555544334444444555555554443333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.66 Score=31.49 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+..+...|.+.|++++|.+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555555
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.29 E-value=14 Score=33.25 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMP-MSPDVATWGALLGACKKHGD 610 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~ 610 (798)
++..-.+.++.+++..++..+. -+.|. ..+-..-+..+.+.|++++|..+|+++. ..|....-.+|+..|....+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344456678888888888774 36775 4444455667788999999999998883 23444455667666655444
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 003746 611 HEMGERVGRKLVELQPDH 628 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~ 628 (798)
-..=....+++++..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADP 110 (160)
T ss_pred ChHHHHHHHHHHhcCCCh
Confidence 333444556666666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.73 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.82 E-value=33 Score=35.93 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---C----HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 369 GYLKCGSVEKARALFDAMIEK---D----VVSWSTMISGYAQ---HDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
+|....+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.+++.|+..+...+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455777777777777777543 1 1122233445556 688889999888866666677777777665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.23 E-value=18 Score=34.65 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=44.0
Q ss_pred hcCcHHHHHHHHHHHHHhC----CCcCCcchHHHHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH--H-
Q 003746 539 HMGLVDEGHRHFNSMIQEH----RLEPNSKHYGCMVDLLGRA-GMLKEAEELIESM-----PMSPDVATWGALLGA--C- 605 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~--~- 605 (798)
+.+++++|.+.++..++-+ .+.--..++-.+.+.|..- .+++.|+..++.. +-+.+...-..++.+ |
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3346666665555443311 0111122333455555543 5566666666655 111222222223322 2
Q ss_pred HHcCChhHHHHHHHHHHhcCCCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
...+++.+|+.+|++.....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 35578888898888887644444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=32 Score=34.83 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 575 (798)
..+.++.+.|+ ++|+..+-.+.. .+|...-...+.++.+.+ ...++...+..+.. .++..+-..-+.++++
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHc
Confidence 34444444443 345555554443 233333333333444332 12344444444432 3455555556666666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 576 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.|+.+-...+++.+. .++ .....+.++...|+. +|...+.++++..||
T Consensus 219 ~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 219 RKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred cCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 666332222333333 122 233455666666663 566666666666663
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.61 E-value=34 Score=34.62 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=14.8
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 003746 603 GACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~ 622 (798)
..+.+.++++.|.+.|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788999998888654
|
It is also involved in sporulation []. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=60 Score=37.30 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH
Q 003746 505 NGLADKSLEMFSEMKKSG-VTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 581 (798)
..+.+.|..++.+..... ..+... ....+.......+..+++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 445678888888775432 333322 223333222332225566666665432 11244445555555568888888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 582 AEELIESMPM--SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 582 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...|..|+. +-...-.-=+..++...|+.++|...|+++.. + .++|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 8888888842 11222223356666668899999988888743 2 24565554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.36 E-value=3.3 Score=37.15 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=36.3
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345666777777776666777777666666677777777777777777665443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.8 Score=43.27 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD 610 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 610 (798)
..-|.++|.+++|+..|...+. +.| +...+..-..+|.+..++..|+.-.+.. .+.. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4567888999999999987754 566 7888888888899988888777655443 1111 12234444444455678
Q ss_pred hhHHHHHHHHHHhcCCCCcc
Q 003746 611 HEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~ 630 (798)
.++|.+-++.+++++|++..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88888889999999998543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.17 E-value=26 Score=32.69 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH-----HHHHHHHhcCCHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEITFV--GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-----CMVDLLGRAGMLKEA 582 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 582 (798)
+.....+++....-+....++. .+...+...|++++|...++..+. .|.-..+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555432122222222 233556778888888888877643 23333333 344567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 583 EELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 583 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
+..++...- ++ ...-..-...+...|+.++|+..|+++++..+++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999887631 22 2223334567788899999999999998887554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.14 E-value=5.3 Score=37.52 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 615 (798)
..|..+-|+-=|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3455566666666554 36786 778888888888999999999999887 55553 222222223344568899999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHH
Q 003746 616 RVGRKLVELQPDHDGFHVLLSNIHASK--GRWDDVLE 650 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~ 650 (798)
+-+-+.-+-+|+|| |..| +.|... =+..+|..
T Consensus 154 ~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~t 187 (297)
T COG4785 154 DDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKT 187 (297)
T ss_pred HHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHH
Confidence 98888888899886 2222 344433 34445543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.88 E-value=7.1 Score=42.43 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=96.1
Q ss_pred hcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC
Q 003746 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 257 (798)
-.|+++.|..++..++.+ .-+.++.-+-+.|..++|+++--.- | .-.....+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D~---d-----~rFelal~lgrl~iA~~la~e~~-- 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTDP---D-----QRFELALKLGRLDIAFDLAVEAN-- 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCCh---h-----hhhhhhhhcCcHHHHHHHHHhhc--
Confidence 457777777777766622 3355666667778888887653221 1 11233456788999988876543
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 337 (798)
+..-|..|..+..+.|++..|.+.|.+.+. |..++-.+...|+-+....+-....+.|.. |.-.-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHH
Confidence 677899999999999999999999988765 566777777777776655555555555532 22223
Q ss_pred HHHhCCCHHHHHHHHH
Q 003746 338 MYSSCGEITTAEKLFD 353 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~ 353 (798)
.|...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4454455555444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.1 Score=40.61 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKK-----SGVTPNEITFVG 532 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 532 (798)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445677888899999999999999888765 456899999999999999999999988765 567776655444
Q ss_pred HHHH
Q 003746 533 VLGA 536 (798)
Q Consensus 533 ll~a 536 (798)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.70 E-value=23 Score=32.33 Aligned_cols=129 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred HHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhcCCCCHHHHH
Q 003746 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG--SVEKARALFDAMIEKDVVSWS 395 (798)
Q Consensus 318 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~ 395 (798)
.-+.+.+++++..++..+++.+.+.|++.....++.-..-+|.......+-.+.... -..-|.+.+.++. ..+.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~ 93 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE 93 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence 334456777777788888888888888888888877766666655544443332211 1234445555443 2455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
.++..+...|++-+|+++.++.... +......++.+..+.++...--.++.....
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777888999999999988775322 222334556666666666555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.56 E-value=3.8 Score=36.16 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=45.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..++.++++.++..+--+.|+.+..-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888888888888888998888888888888899999999999888876553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=6 Score=39.51 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..-++...++-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3567778889999999999999999999999998788889999999999999998888876543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.92 E-value=55 Score=35.28 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
..-+++..+.++..+.-...+..+|..-| -+...+..++..+... ..+.--.+++.+.+..+. |+.....|++.|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 44567777778888888888888887754 4566777778777766 556667777777776654 5566667777777
Q ss_pred hcCCHHHHHHHHhhcCCCCc---------chHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCc
Q 003746 473 KLGCVDNALEVFHGTEEKGV---------SSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACRHMGL 542 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 542 (798)
+ ++.+.+...|.++..+=+ ..|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 7 777788777776542211 1344443211 1233344444444332 2222223334444445555566
Q ss_pred HHHHHHHHHHHHH
Q 003746 543 VDEGHRHFNSMIQ 555 (798)
Q Consensus 543 ~~~a~~~~~~~~~ 555 (798)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665544
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.67 E-value=13 Score=41.40 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHhcccchhHHHHHHHHHHHc-C-CC
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE----------ATLVSVISACTHLVALDQGKWIHAYIRKN-G-LK 458 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~ 458 (798)
..+-..++-.|....+++..+++.+.++.- ||. +.|...++--.+-|+-+.|..+.-.+++. | +.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 345566777888888999999998888763 332 22334444444567777777766665544 2 23
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT---FVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~ 535 (798)
| ++||-||++-+ .|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..|+.
T Consensus 278 p---------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 278 P---------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLR 331 (1226)
T ss_pred C---------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHH
Confidence 3 46777776532 221 12334455667788888888877 6777643 444554
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
+-.+ .++...++-. + | -.|-.+++|.|.++.-.++++-. ..+.+-.-..++.+|.
T Consensus 332 aaG~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kai 386 (1226)
T KOG4279|consen 332 AAGE--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAI 386 (1226)
T ss_pred Hhhh--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHH
Confidence 4322 1222221111 1 1 13456678999888877765533 2233444567899999
Q ss_pred HHHHHHHhcCCCC
Q 003746 616 RVGRKLVELQPDH 628 (798)
Q Consensus 616 ~~~~~~~~~~p~~ 628 (798)
++.++|+++.|..
T Consensus 387 qAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 387 QAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHhccCCce
Confidence 9999999998864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.44 E-value=12 Score=40.90 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=101.8
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
-.|+++.|..++..+++. ..+.++.-+...|..++|+++ .||..-. .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 457778777777666632 344556666677777777763 3333321 1123467888888887655
Q ss_pred HHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 553 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+...+|..+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 4 245668899999999999999999998863 26677777888888887666666666666655433
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 003746 633 VLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 633 ~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+|...|++++..+++..
T Consensus 729 ----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHh
Confidence 256678999998887754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.56 E-value=18 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444555555555555555555555544444332 3444455555555555555555444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.53 E-value=1.6 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.+..++.+.|+.++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455556666666666666666666665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.37 E-value=40 Score=35.40 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQP----DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
....+|..++..++++|+++.|...+.++.+..+ ..+...+.-+......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999987652 24566667788899999999999998888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.05 E-value=2.2 Score=30.29 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
-.+.-++.+.|+++.|.+..+.+++++|++..+..+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3466788999999999999999999999997655443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.03 E-value=84 Score=35.84 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=100.9
Q ss_pred HHHHHhcCChHHHHHHHccCCCC-----CcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHH
Q 003746 173 INMYAVCGDLSAARKLFDESPVL-----DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A 247 (798)
++-+.+.+.+++|...-+..... -...|...|..+.-.|++++|-...-.|...+..-|.--+.-+...+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777888888887665421 2246888899999999999999998888888777777777777766666554
Q ss_pred HHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCc
Q 003746 248 CRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326 (798)
Q Consensus 248 ~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 326 (798)
..+.-.-+. -+...|..++..+.. -+...-.++.++. +++...-..++++. ..+..+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~------------~~q~~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT------------EPQIKQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc------------chHHHhh--c
Confidence 444322222 144567777777766 2222222222211 12222222222221 1111111 1
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh
Q 003746 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361 (798)
Q Consensus 327 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 361 (798)
.+..+...|+..|...+++++|.+++-+...++..
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 12233344999999999999999998776666544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.93 E-value=20 Score=29.16 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 003746 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 429 (798)
..+...|++++|..+.+.+..||...|-++... +.|..+++..-+.+|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345578888888888888888888888777654 5666677777777777665 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.64 E-value=10 Score=35.32 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKG------VSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999988653 346778888889999999998888877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.3 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=83.49 E-value=29 Score=30.05 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
..-+......|+-+.-.+++.++.+ +-+|+......+..||.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445666677777777777777664 2366677777777888888888888877777755
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.28 E-value=1.9 Score=27.25 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 003746 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186 (798)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (798)
+.++++.. |.|...|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667788888888888888888875
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.10 E-value=2.3 Score=37.96 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (798)
+..+.+.+.+......+..+.+.+...+..+.+.++..|++.++.++..+.++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444445555555666666666655566677888888888888777777777774222 33344555555666666666
Q ss_pred HHHHhc
Q 003746 381 ALFDAM 386 (798)
Q Consensus 381 ~~~~~m 386 (798)
-++.++
T Consensus 91 ~Ly~~~ 96 (143)
T PF00637_consen 91 YLYSKL 96 (143)
T ss_dssp HHHHCC
T ss_pred HHHHHc
Confidence 665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.07 E-value=8.2 Score=35.37 Aligned_cols=45 Identities=13% Similarity=-0.039 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHH
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR----WDDVLEVRGMM 655 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 655 (798)
+++|+.-|++++.++|+...++..++++|...|. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677778888899999999999999999988764 33444444444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.99 E-value=94 Score=35.63 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=41.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHHh---
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMK--- 473 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 473 (798)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667899999988876 3345566777766665543322222211 2222211 11112456678888875
Q ss_pred cCCHHHHHHHHhhcCC
Q 003746 474 LGCVDNALEVFHGTEE 489 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~ 489 (798)
..+..+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4678888888876654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.71 E-value=8.2 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 707 (798)
..+.++-.+.+.|++++|.+..+.+.+. .|...++....+.+.++|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3556777899999999999999998763 35566777777778888887763
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.63 E-value=2.6 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466667777777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.55 E-value=13 Score=30.28 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 236 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
..+...|++++|..+.+....||...|-+|-.. +.|..+++..-+.+|-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 345667999999999999988999999887653 5677777777777776655
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.52 E-value=5.7 Score=39.61 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445555666666777777777777777777767777777777777777777777766654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.06 E-value=11 Score=34.60 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+++|...|+++.+.+|++..+...|- + .++|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~------~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-M------AAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-H------HHTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-H------HHhhHHHHHHHHHHHhh
Confidence 56788888888999999976555553 2 24577788888776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.90 E-value=2.3 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.73 E-value=9.8 Score=34.46 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=71.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHH-----HHHhccCChHHHHHHHHHHHHhCCCCchh-HHHH
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA-----QASALRLSVFEGKLIHDHVLKAGFDSDVY-VNNT 171 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll-----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 171 (798)
.|..-+. +++.+..++|+.-|..+...|.. .|..|. ...+..|+...|...|+.+-+--..|-.. -...
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3433333 35667777888888877766543 233332 22456677777888887776654333332 1111
Q ss_pred H--HHHHHhcCChHHHHHHHccCCCC-Cc---chHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003746 172 L--INMYAVCGDLSAARKLFDESPVL-DL---VSWNSILAGYVNADNVEEAKFIYNKMPE 225 (798)
Q Consensus 172 l--i~~y~~~g~~~~A~~~f~~~~~~-d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (798)
| .-.+...|.+++.....+.+..+ ++ ..-..|.-+-.+.|++.+|...|.++..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 22345677777777766655422 22 2334555666678888888888887765
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.55 E-value=3 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666677777777777777766664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.29 E-value=43 Score=30.55 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc-hHHHH--HHHHHhcC
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK-HYGCM--VDLLGRAG 577 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 577 (798)
+++.+..++|+.-|.++.+.|...-.+ ...-........|+...|...|.++-++.. .|.+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 356777888888888888876543322 222233445678889999999998865422 23221 11222 23456788
Q ss_pred CHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 578 MLKEAEELIESMPMS--P-DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 578 ~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.+++.....+.+..+ | -...-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888777322 3 234556777778889999999999998876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.50 E-value=99 Score=34.19 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=76.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (798)
-+...|+.+|.---.....+.+...+..++.. -|..+-| .....-=.+.|..+.+.++|+..++ |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 35557887776555555555666667766632 3444432 2222223466777777788877765 356666667666
Q ss_pred HHHHHh-cCChHHHHHHHccCCC------CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHH
Q 003746 173 INMYAV-CGDLSAARKLFDESPV------LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232 (798)
Q Consensus 173 i~~y~~-~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (798)
...... .|+.+..++.|+.... .....|...|.--..++++.....+|++..+-...-++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 655543 3666666666665431 22334555555555555666666666655554433333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.29 E-value=8.2 Score=38.82 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 577 (798)
..-|.+.|.+++|+..|..-.. +.| |.+++..-..+|.+...+..|..-...++. . -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3569999999999999998776 577 889999999999999988888776665543 1 123456666655
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 003746 578 -------MLKEAEELIESM-PMSPDV 595 (798)
Q Consensus 578 -------~~~~A~~~~~~~-~~~p~~ 595 (798)
...||.+-.+.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 445554444443 456663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 1e-12
Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 7/186 (3%)
Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
+ P E L ++ ++LD + + L +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 477 VDNALEVFHGTEEKG-------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
+ A + + + +NA+++G+A G + + + +K +G+TP+ ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
+ L + + L+ + ++ RA +LK ++ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 590 PMSPDV 595
+ P +
Sbjct: 263 SLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 8e-09
Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 8/139 (5%)
Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-------DVVSWSTMISGYAQHDQ 406
A + + L + A L + + ++ ++ G+A+
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-IHAYIRKNGLKINSILGT 465
F E + + ++ G+ PD + + + + + GLK+ ++
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 466 TLIDMYMKLGCVDNALEVF 484
L+ + + +V
Sbjct: 241 VLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 1e-08
Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN- 357
+L + + + + A ++ A L H
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 358 ------LDLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSWSTMISGYAQHDQF 407
L L +N+++ G+ + G+ ++ + + + D++S++ + + DQ
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 408 SETLSLFM-EMQHHGIRPDEATLVSVISAC 436
+ T+ + +M G++ ++S
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 2e-07
Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 12/169 (7%)
Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD-- 190
L Q + +LS+ + +A + L A L
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 191 -----ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRK 241
+ +L L +N+++ G+ +E ++ + + + + + GR+
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 242 GNVAEAC-RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
A R ++M ++ L + + E L +
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 84/559 (15%), Positives = 169/559 (30%), Gaps = 178/559 (31%)
Query: 19 NAKPIFKPTINLSILETH--LQKC-QSFKQFTQILSQ-MILTG---LIADTFAASRLIKF 71
N +F N+S L+ + L++ + +L ++ +G + D + +
Sbjct: 121 NDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---- 175
Query: 72 STDLLPFIEMSYSFKIF----AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
++ FKIF SP + Q + Y++ N
Sbjct: 176 -------VQCKMDFKIFWLNLKNCNSPETVL------------EMLQKLL-YQIDPNWTS 215
Query: 128 GVDN-YTYPLLAQASALRLS-VFEGK------LIHDHV-----LKAGFD---------SD 165
D+ L + L + + K L+ +V A F+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRF 274
Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
V + L L V L L Y++ +P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCR--------PQDLPR 320
Query: 226 RNIIASN----SMIVLFGRKGNVAEACRL--FKEMPKKDL-----VSWSALISCYEQNEM 274
++ +N S+I R G +K + L S + L E +M
Sbjct: 321 E-VLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKM 374
Query: 275 YEEALVLFMN--MIDHRVM------VDEVVVVSVLSACANLTVV----KAGT-SVHALAV 321
++ L +F I ++ V + V+ V++ ++V K T S+ ++ +
Sbjct: 375 FDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 322 KIGIEC--YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
++ ++ L +++ Y+ K FD+ + + Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYN-------IPKTFDSDDLIPPY-----LDQY--------- 472
Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
+ + I G+ H ++H + TL +
Sbjct: 473 --------------FYSHI-GH--H---------LKNIEHP----ERMTLFR-------M 495
Query: 440 VALDQGKWIHAYIRKNGLKINSI--LGTTLIDM--YMKLGCVD--------NALEVF-HG 486
V LD +++ IR + N+ + TL + Y C + NA+ F
Sbjct: 496 VFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 487 TEEKGVSSWNALIIGFAMN 505
EE + S ++ A+
Sbjct: 555 IEENLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 50/346 (14%), Positives = 111/346 (32%), Gaps = 107/346 (30%)
Query: 2 TLATKLAHLSSTIKSSVNAKPIFKPTINLSILETHL-QKCQSF-KQFTQILSQMILTGLI 59
+ L+ ++T S + P S+L +L + Q ++ + + +I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SII 333
Query: 60 A----------DTF------AASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF--NT 101
A D + + +I+ S ++L E F + +F +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--------VFPPSA 385
Query: 102 MMRAYIQRNVPQQAICLY---------KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
++P + L +++N L + S + E +
Sbjct: 386 --------HIPTILLSLIWFDVIKSDVMVVVN-----------KLHKYSLVEKQPKESTI 426
Query: 153 -IHDH--VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-VLDLVSWNSILAGY- 207
I LK +++ ++ ++++ Y ++ D P LD ++ I G+
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHI--GHH 480
Query: 208 -VNADNVEEA----------KFIYNKM----PERNIIAS--NSMIVLFGRKGNVAEACRL 250
N ++ E +F+ K+ N S N++ L K + +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 251 FKEM------------------PKKDLVSWSALISCYEQNEMYEEA 278
++ + DL+ AL+ E ++EEA
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLR-IALM--AEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 79/610 (12%), Positives = 162/610 (26%), Gaps = 213/610 (34%)
Query: 154 HDHVLKAGFDSDV----YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
H H+ D + Y +++++ A FD V D+ SIL+
Sbjct: 4 HHHM-----DFETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMP--KSILSK--- 48
Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG-NVAEACRLFKEMPKKDLVSWSALISC 268
EE I + + + + K + + + +E+ + + + L+S
Sbjct: 49 ----EEIDHIIM-SKDA-VSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINY-KF--LMSP 97
Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
+ E + +++ M + + ++ V + V + ++ Y
Sbjct: 98 I-KTEQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSR-------------LQPY 137
Query: 329 INLQNAL----------IH-MYSSCGEIT-TAEKLFDAG---HNLDLISWNSMISGYLKC 373
+ L+ AL I + G+ + I W L
Sbjct: 138 LKLRQALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNL 189
Query: 374 GSVEKARALFDAM------IEKDVVSWSTMISGYAQH-DQFSETLS-LFMEMQHHGIRPD 425
+ + + + I+ + S S S L L + +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----E 244
Query: 426 EATLVSVISACTHLVALD--QGKWIHAYIRKNGLKINS-ILGTTLIDMYMKLGCVDNALE 482
LV L Q N ++ IL TT + V + L
Sbjct: 245 NCLLV-----------LLNVQNAKA-----WNAFNLSCKILLTT------RFKQVTDFLS 282
Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS---EMKKSGVTPNEITFVGVLGACRH 539
T S + + D+ + + + + P E+ + R
Sbjct: 283 AATTTHI----SLDHHSMTLT----PDEVKSLLLKYLDCRPQDL-PREV----LTTNPRR 329
Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
+ ++ E R + N KH C ++L + S +V
Sbjct: 330 LSIIAESIRDGLATWD------NWKHVNC--------------DKLTTIIESSLNV---- 365
Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
L+P E R M R
Sbjct: 366 ------------------------LEPA----------------------EYRKMFDRLS 379
Query: 660 V----VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
V IP + + D +++ +++++ K +E ++
Sbjct: 380 VFPPSAHIPTILL--------SLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 716 FDIDQEEKET 725
I E K
Sbjct: 429 PSIYLELKVK 438
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 25/190 (13%), Positives = 66/190 (34%), Gaps = 9/190 (4%)
Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE----MPKKDLVSWSALIS 267
+ + + + E++ + K EA +++ + KK+++ + A
Sbjct: 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329
Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
E YE+ ++ ++ + +V + + +K+G + A +
Sbjct: 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389
Query: 328 Y-INLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS---WNSMISGYLKCGSVEKARALF 383
+ + + AL+ Y + + A K+F+ G + I R LF
Sbjct: 390 HHVYVTAALMEYYC-SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448
Query: 384 DAMIEKDVVS 393
+ ++ +
Sbjct: 449 ERVLTSGSLP 458
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 15/195 (7%)
Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
+ RAY+ + + + + + + A+ A D +
Sbjct: 40 LYRAYLAQRKYGVVL----DEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 162 FD-SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
D ++ ++Y + AA + + L + + D ++ A+
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--DSLECMAMTVQILLKLDRLDLARKEL 153
Query: 221 NKMPERN-----IIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQN 272
KM +++ + + + L + +A +F+EM K L+ + +C+
Sbjct: 154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213
Query: 273 EMYEEALVLFMNMID 287
+E A + +D
Sbjct: 214 GRWEAAEGVLQEALD 228
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 15/207 (7%)
Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE-----MPKKDLVSWSALI 266
+ + + + E++ + K EA +++ + K L+ + A
Sbjct: 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL-YFAYA 106
Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
E YE+ ++ ++ + +V + + +K+G + A +
Sbjct: 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166
Query: 327 CYIN-LQNALIHMYSSCGEITTAEKLFDAG-----HNLDLISWNSMISGYLKCGSVEKAR 380
+ + AL+ Y S + + A K+F+ G + + I R
Sbjct: 167 RHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTR 223
Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQF 407
LF+ ++ + +A+ F
Sbjct: 224 VLFERVLTSGSLPPEKSGEIWARFLAF 250
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 11/151 (7%)
Query: 534 LG-ACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEELIE-SMP 590
L + G + E H+ I R+ P Y M + L ++ A + ++
Sbjct: 49 LASVLQQQGKLQEALMHYKEAI---RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 591 MSPDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
++P A L K G+ R ++L+PD + L++ W D
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
E +++ V + +H +
Sbjct: 166 E----RMKKLVSIVADQLEKNRLPSVHPHHS 192
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.74 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.74 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.54 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.39 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.38 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.23 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.22 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.15 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.99 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.99 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.87 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.25 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.24 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.19 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.53 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.26 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.91 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.56 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.94 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.28 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.92 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.83 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.34 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.92 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 82.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.15 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.86 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.25 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=391.36 Aligned_cols=500 Identities=9% Similarity=-0.039 Sum_probs=294.8
Q ss_pred cCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 003746 73 TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152 (798)
Q Consensus 73 ~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~ 152 (798)
.+. +.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|+++.|..
T Consensus 62 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTS-TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccc-ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 455 788899999999999999999999999999999999999999999984 45777888888888888888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHH
Q 003746 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232 (798)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (798)
+++.+... ++++.+++.++.+|.++|++++|.++|+++...+... .++.+.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~---------------------- 189 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKL---------------------- 189 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------------------------------
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccc----------------------
Confidence 88877543 5778888888888888888888888888543222110 000000
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHH
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 312 (798)
++ ++.-...++.+|+.++.+|.+.|++++|+++|++|.+. .|+..+....+..+........
T Consensus 190 ---------~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 190 ---------LM-------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp ----------C-------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHH
T ss_pred ---------cc-------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhH
Confidence 00 00111236788999999999999999999999999874 3555444333333322221111
Q ss_pred HHHH----HHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 313 GTSV----HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 313 a~~i----~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
...+ +..+...+......+++.++.+|. +.|++++|.++|+++.+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-------------------------------HEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-------------------------------THHHHHHHHHHHHTSTT
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHc-------------------------------CcchHHHHHHHHHHhhc
Confidence 1111 222333333334444555555565 55555555555555544
Q ss_pred --CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 389 --KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 389 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..+++.
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 455555555555555556666665555555443 2244455555555555566666666555555432 334555566
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 543 (798)
++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 66666666666666666665432 234566666666666666666666666666542 23445666666666666666
Q ss_pred HHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHH
Q 003746 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD--VATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A 614 (798)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666666542 1224555666666666666666666666655 23454 45666666666666666666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
++.+++++++.|+++.++..++.+|...|++++|.++++++.+.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.22 Aligned_cols=458 Identities=11% Similarity=0.035 Sum_probs=348.8
Q ss_pred HHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE--RNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ++..++..++..|.+.|++++|..+|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44566667777777777777777888888888888888888888887753 5667777788888888888888888888
Q ss_pred CC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 254 MP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 254 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
+. .++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++. ..+.+.+..+
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~~~~~~~~~~ 202 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------DGGIKLEASM 202 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------CSSCCHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------ccccchhHHH
Confidence 73 4677888888888888888888888887532 2220 01111111111 1245667888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHH--H-HHhcCCC----CHHHHHHHHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHN---LDLISWNSMISGYLKCGSVEKARA--L-FDAMIEK----DVVSWSTMISGY 401 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~----~~~~~~~li~~~ 401 (798)
++.++..|.+.|++++|.++|+++.. .+...|..+...+...+..+.+.. + |..+... ....|+.++..|
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 334455555554443332222211 1 3333333 344677788999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
.+.|++++|.++|++|... .++..++..++.++.+.|++++|..+++.+.+.+. .+..+++.++.+|.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999765 58999999999999999999999999999998764 37788999999999999999999
Q ss_pred HHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Q 003746 482 EVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557 (798)
Q Consensus 482 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 557 (798)
++|+.+.+ .+..+|+.++..|.+.|++++|+++|+++.+. .| +..+|..++.++.+.|++++|.++|+++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 436 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL- 436 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 99998863 46789999999999999999999999999884 44 4669999999999999999999999999763
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCC-
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVEL------QPDH- 628 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~- 628 (798)
.+.+...|..++.+|.+.|++++|.++|+++ . .+.+..+|+.++..|.+.|++++|++.++++++. +|++
T Consensus 437 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 437 -FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 2347899999999999999999999999998 2 2347899999999999999999999999999987 5554
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..++.+|...|++++|.++++++.+.+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 56889999999999999999999999987653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=252.68 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=169.3
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc---------hhH
Q 003746 379 ARALFDAMIEK-----DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA---------LDQ 444 (798)
Q Consensus 379 A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~ 444 (798)
+..+.+.+.++ ....++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555433 2345888999999999999999999999999999999999999999987554 678
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE----KGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
|.++|+.|.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875 5788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc
Q 003746 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576 (798)
Q Consensus 521 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 576 (798)
.|+.||..||+.|+.+|++.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999965 58999999999999988763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=226.68 Aligned_cols=369 Identities=11% Similarity=0.084 Sum_probs=266.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCchh-HHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH
Q 003746 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVV-VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345 (798)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 345 (798)
..+.+.|++++|++.++++.+. .|+... +..+...+...++.+.+...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3344555555555555555442 233322 2222233344455555555555554432 44556667777777777777
Q ss_pred HHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003746 346 TTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419 (798)
Q Consensus 346 ~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 419 (798)
++|.+.|++. .+.+...|..+..++.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777652 233345677777777777777777777776642 2455677777777777888888888887776
Q ss_pred cCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHH
Q 003746 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWN 496 (798)
Q Consensus 420 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 496 (798)
.. +-+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++... .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 52 2245667777777778888888888888877764 23566777788888888888888888886553 3467888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 575 (798)
.+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++++. .+++...+..++..|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8899999999999999999999884 454 457888888999999999999999998764 23467888899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
.|++++|.+.++++ ...| +..+|..+..++.+.|++++|...+++++++.|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999887 4445 577899999999999999999999999999999999999999988877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-23 Score=221.12 Aligned_cols=348 Identities=13% Similarity=0.138 Sum_probs=304.8
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHH
Q 003746 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEK 378 (798)
Q Consensus 302 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 378 (798)
..+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++. ..+.+...|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34556799999999999888764 44566778888899999999999999976 456677899999999999999999
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 379 ARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-ATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 379 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
|...|+++. ..+..+|..+...+.+.|++++|++.|+++... .|+. ..+..+...+...|++++|...+..+++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999884 346678999999999999999999999999885 4554 4556677778889999999999999998
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITF 530 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 530 (798)
.. +.+...+..+...|.+.|++++|...|+++.+. +...|..+...+...|++++|+..|++.... .|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 75 345788899999999999999999999988643 4568999999999999999999999999884 565 5688
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKK 607 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 607 (798)
..+..++...|++++|.+.|+++++ ..| +...|..++..|.+.|++++|.+.++++ . .+++..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8899999999999999999999986 355 4778999999999999999999999988 2 34578899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=241.85 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=150.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCccchh
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV---------VKAGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 330 (798)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987554 677888888888888888888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCC
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~ 406 (798)
+||+||.+|+ +.|++++|.++|++|. .||.++||++|.+|++.|+
T Consensus 107 tyn~lI~~~~-------------------------------~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 107 TFTNGARLAV-------------------------------AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-------------------------------hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 8888888777 6666666666666663 4577778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|..|+..+|+.+++.|+..
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888887777653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-21 Score=215.04 Aligned_cols=421 Identities=10% Similarity=-0.019 Sum_probs=290.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhc
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACAN 306 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 306 (798)
.+..+...|.+.|++++|.+.|+++.+ ||...|..+..+|.+.|++++|+..|+++.+.+ |+. ..+..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 445556666677777777777766542 566666777777777777777777777666532 332 355555555666
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHH---HHHHhcCCHHHH
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMI---SGYLKCGSVEKA 379 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li---~~~~~~g~~~~A 379 (798)
.|+.+.|...+..+.+.+. ++......++..+.+......+.+.+.. ...++...+.... ............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 6666666666666655542 2222223333333322222222222210 0000000000000 000001111111
Q ss_pred HHHHHhcC----------CCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 003746 380 RALFDAMI----------EKDVVSWSTMISGYAQ---HDQFSETLSLFMEMQH-----HGIRP--------DEATLVSVI 433 (798)
Q Consensus 380 ~~~~~~m~----------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 433 (798)
...+.... ..+...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11221111 1124455555555554 8999999999999987 31122 345677777
Q ss_pred HHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHH
Q 003746 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 434 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 510 (798)
..+...|++++|...+..+.+.... ...+..+...|.+.|++++|...|+.+... +...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999999987654 888889999999999999999999987643 56789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 511 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|+..|++..+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999853 224568888889999999999999999999874 34 5788899999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 590 ----PMSPD----VATWGALLGACKK---HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 590 ----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..++ ..+|..+...+.. .|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4489999999999 999999999999999999999999999999999999999999999998874
Q ss_pred C
Q 003746 659 G 659 (798)
Q Consensus 659 ~ 659 (798)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=216.77 Aligned_cols=432 Identities=11% Similarity=-0.034 Sum_probs=289.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC--CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCC
Q 003746 200 WNSILAGYVNADNVEEAKFIYNKMPE--RNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEM 274 (798)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 274 (798)
|......+.+.|++++|+..|+++.. ++...+..+...|.+.|++++|.+.|+++.+ .+..+|..+..+|.+.|+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555554432 3444555555556666666666666655432 245677777778888888
Q ss_pred hhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHH---HHHHHhCCCHHHHHHH
Q 003746 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL---IHMYSSCGEITTAEKL 351 (798)
Q Consensus 275 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~~A~~~ 351 (798)
+++|+..|+++...+. ++......++..+........+...++.+.+.+..++....+.- ............+...
T Consensus 89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 8888888887776542 33333333333333222222222222111111111100000000 0000011111111111
Q ss_pred HHhc----------CCCChhhHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-CHHHHHHHHHHH
Q 003746 352 FDAG----------HNLDLISWNSMISGYLK---CGSVEKARALFDAMIE----------------K-DVVSWSTMISGY 401 (798)
Q Consensus 352 ~~~~----------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~ 401 (798)
+... .+.+...+......+.. .|++++|...|+++.. + +..+|..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 1110 01223444444444444 7889999998887654 1 356788899999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
...|++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998864 447778888889999999999999999998764 345678888999999999999999
Q ss_pred HHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 482 EVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 482 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
..|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99998653 356789999999999999999999999998852 23456888889999999999999999999976422
Q ss_pred CcCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 559 LEPN----SKHYGCMVDLLGR---AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 559 ~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
-.++ ...+..++..|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 2222 3388999999999 99999999999987 3334 678899999999999999999999999999999988
Q ss_pred chHHHHH
Q 003746 630 GFHVLLS 636 (798)
Q Consensus 630 ~~~~~l~ 636 (798)
..+..+.
T Consensus 484 ~~~~~~~ 490 (514)
T 2gw1_A 484 EKLQAIT 490 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=207.04 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=267.3
Q ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHH
Q 003746 326 ECYINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMIS 399 (798)
Q Consensus 326 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 399 (798)
+.+...+..+...|.+.|++++|.++|++ ..+.+...|..+..++.+.|++++|...|+++. ..+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44567788888899999999999999986 345567888899999999999999999998874 346788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHhcccchhHHHHHHHHHHHcCCCCcHHH
Q 003746 400 GYAQHDQFSETLSLFMEMQHHGIRPDE----ATLVSV------------ISACTHLVALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 400 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
.|.+.|++++|+..|+++... .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999874 4543 344444 334788899999999999998875 447788
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHH------
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT-FVGV------ 533 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------ 533 (798)
+..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.. ..|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998764 4678999999999999999999999999987 4566553 3333
Q ss_pred ------HHHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 003746 534 ------LGACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGA 600 (798)
Q Consensus 534 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 600 (798)
...|.+.|++++|..+|+++++. .|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999874 454 457899999999999999999999987 3344 6899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH------------HHHHhcC-----ChhHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS------------NIHASKG-----RWDDVLEVRGM 654 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 654 (798)
++.+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998 4466666 44556666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-20 Score=206.92 Aligned_cols=440 Identities=10% Similarity=0.004 Sum_probs=287.7
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003746 96 GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175 (798)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (798)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4578888899999999999999999998765 4567788888899999999999999999999987 6678899999999
Q ss_pred HHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCC------chHHHHHHHHHhhcCCHHHHHH
Q 003746 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------IIASNSMIVLFGRKGNVAEACR 249 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~y~~~g~~~~A~~ 249 (798)
|...|++++|...|+.+. .++...+..+..+...+...+|+..++++...+ .......+..|....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999996433 233333334555666666677888887776532 1223344555555666666666
Q ss_pred HHhcCCCCCcc---cHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHH
Q 003746 250 LFKEMPKKDLV---SWSALISCYEQN--------EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318 (798)
Q Consensus 250 ~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 318 (798)
.+......+.. .+..+...+... |++++|+.+|+++.+. .|+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~----------------------- 236 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDD----------------------- 236 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH-----------------------
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcc-----------------------
Confidence 66555543332 222222222111 2344444444444331 11110
Q ss_pred HHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 003746 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398 (798)
Q Consensus 319 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 398 (798)
.++..+ ..+|..+.
T Consensus 237 -----------~~~~~~-------------------------------------------------------~~~~~~~g 250 (537)
T 3fp2_A 237 -----------PLRENA-------------------------------------------------------ALALCYTG 250 (537)
T ss_dssp -----------HHHHHH-------------------------------------------------------HHHHHHHH
T ss_pred -----------hhhHHH-------------------------------------------------------HHHHHHHH
Confidence 000000 11233344
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
..+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4555555666666666655553 3444555555555666666666666666665543 234566777777888888888
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+|.+.|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++++
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888877653 346688888888999999999999999888752 23345778888888999999999999998876
Q ss_pred hCCCcCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 003746 556 EHRLEPN----SKHYGCMVDLLGRA----------GMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 556 ~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
...-.++ ...+..+...|.+. |++++|...++++ ...| +..+|..+...+...|++++|.+.++
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4211111 12234455677777 9999999999887 3334 57888999999999999999999999
Q ss_pred HHHhcCCCCcchHH
Q 003746 620 KLVELQPDHDGFHV 633 (798)
Q Consensus 620 ~~~~~~p~~~~~~~ 633 (798)
+++++.|+++....
T Consensus 487 ~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 487 DSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHC--CHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99999998766544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=207.64 Aligned_cols=247 Identities=9% Similarity=0.022 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 405 DQFSETLSLFMEMQHHGIRPD--------EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
|++++|+.+|+++... .|+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 4678888888888764 343 2245556667788899999999999999875 447788889999999999
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 477 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
+++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|..+++++
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998764 356789999999999999999999999999853 223568888999999999999999999999
Q ss_pred HHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHHc----------CChhHH
Q 003746 554 IQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMS----PDVATWGALLGACKKH----------GDHEMG 614 (798)
Q Consensus 554 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~----p~~~~~~~l~~~~~~~----------g~~~~A 614 (798)
.+. .| +...+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|
T Consensus 371 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 371 KLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 874 34 4778999999999999999999999986 111 1223355566777777 999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999988754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=198.39 Aligned_cols=344 Identities=13% Similarity=0.023 Sum_probs=224.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 337 (798)
++..|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.+.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888889999999999999999887642 2244566666666777777777777777777664 334566777777
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 338 MYSSCGEITTAEKLFDAGHNL---DL---ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
.|.+.|++++|.+.|++.... +. ..|..++..+... .+..+...+.+.|++++|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 777777777777777653222 22 4444443331110 1111233355556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK- 490 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 490 (798)
..|+++.... +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655432 2244555555555666666666666666655542 234555666666666666666666666655422
Q ss_pred --CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 491 --GVSSWNAL------------IIGFAMNGLADKSLEMFSEMKKSGVTPN-----EITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 491 --~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
+...|..+ ...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22333333 7788888888899988888887 3455 2356777788888899999999888
Q ss_pred HHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHcC-----Ch
Q 003746 552 SMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA------------CKKHG-----DH 611 (798)
Q Consensus 552 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~ 611 (798)
++++. .| +...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ |...| +.
T Consensus 320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 88763 45 4778888888888999999999888887 5555 45666666633 33334 66
Q ss_pred hHHHHHHHH-HHhcCCCCc
Q 003746 612 EMGERVGRK-LVELQPDHD 629 (798)
Q Consensus 612 ~~A~~~~~~-~~~~~p~~~ 629 (798)
+++.+.+++ +++..|++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp THHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 788888987 778888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-15 Score=171.98 Aligned_cols=354 Identities=10% Similarity=0.087 Sum_probs=199.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHH
Q 003746 263 SALISCYEQNEMYEEALVLFMNMIDHRV--MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340 (798)
Q Consensus 263 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 340 (798)
...+.+|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +...+........+ .....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHH
Confidence 4467899999999999999999984421 11122233344333333 44444444333321 11334666677
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003746 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420 (798)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 420 (798)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 77777777777776531 1111222222 555666666666654 23455666666666666666666666442
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH
Q 003746 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500 (798)
Q Consensus 421 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 500 (798)
-|...|..+..+|.+.|+++++.+.+...++.. +++.+.+.++.+|++.+++++..... ...+...|..+..
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 344555556666666666666666666555543 22222333555566665555433332 2233344444555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------C
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE-----------------------H 557 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-----------------------~ 557 (798)
.|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.... .
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555555555555555542 24555555555555555555554443110 0
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCC-----CC
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH--GDHEMGERVGRKLVELQP-----DH 628 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~ 628 (798)
++..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+. ++..++.+.|..-..+.| ++
T Consensus 1275 ~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1275 HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 12224455667777788888888888888665 4444 344565566555543 466666677776666665 55
Q ss_pred cchHHHHHHHHHhcCChhHHHH
Q 003746 629 DGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
...|.-+..+|.+.|+|+.|..
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHH
Confidence 6667777778888888888874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=181.92 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=64.3
Q ss_pred hhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003746 62 TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141 (798)
Q Consensus 62 ~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~ 141 (798)
+...+.|+. +.|++++|...+++++.|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++
T Consensus 6 ~~a~~~ll~------~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~a 71 (449)
T 1b89_A 6 TSAVQVLIE------HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH------HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHH
Confidence 344566776 8999999999999997775 899999999999999999999975 36888999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHh
Q 003746 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221 (798)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 221 (798)
...|++++|...+..+.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988875 46688999999999999999999988864 677799999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 003746 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283 (798)
Q Consensus 222 ~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 283 (798)
.+ ..|..|++.+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|.....
T Consensus 147 ~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 147 NV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred Hh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 77 468888888888888888888888873 78888888888888888888855443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-16 Score=169.16 Aligned_cols=302 Identities=13% Similarity=0.101 Sum_probs=216.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGY 401 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 401 (798)
++..+..+...|.+.|++++|...|++ ..+.+...|..+...+...|++++|...|+++. ..+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345566777777877777777777765 233455667777777777777777777777653 23556677777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRP---DEA-TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~p---d~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 477 (798)
...|++++|+..|+++... .| +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777653 34 211 11111100 00 11122345677888888
Q ss_pred HHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 478 DNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 478 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
++|.+.|+.+.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887653 356678888888888888999998888888752 3345577788888888889999999888887
Q ss_pred HhCCCcCC-cchHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHH
Q 003746 555 QEHRLEPN-SKHYG------------CMVDLLGRAGMLKEAEELIESM-PMSPD-V----ATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 555 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 615 (798)
+. .|+ ...+. .++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|+
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 63 343 22222 3366788999999999999887 22343 3 23556788899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-17 Score=170.69 Aligned_cols=317 Identities=11% Similarity=0.016 Sum_probs=232.1
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHH
Q 003746 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYL 371 (798)
Q Consensus 295 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 371 (798)
..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++. .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 456667778889999999999999999875 456788999999999999999999999873 3446688999999999
Q ss_pred hcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHH
Q 003746 372 KCGSVEKARALFDAMIEKD------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 445 (798)
+.|++++|...|++....+ ...|..+...+. ...+......+...|++++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 9999999999999885433 334444421100 00111222333444444555
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
...+..+.+.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+...|...|++++|+..|++..+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 54444444432 23445566666777777777777777776553 24557777778888888888888888887763
Q ss_pred CCCCHH-HHH------------HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-----chHHHHHHHHHhcCCHHHHHH
Q 003746 523 VTPNEI-TFV------------GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-----KHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 523 ~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~ 584 (798)
.|+.. .+. .+...+...|++++|...++++.+. .|+. ..+..+...|.+.|++++|.+
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 34433 222 2356688899999999999999774 3442 335568889999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 585 LIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 585 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
.+++. ...| +..+|..+...+...|++++|...+++++++.|+++.....+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99987 3344 788999999999999999999999999999999999888888766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-14 Score=164.80 Aligned_cols=379 Identities=12% Similarity=0.096 Sum_probs=239.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCC--CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV--GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (798)
|+.+ ...+.+|...|.+.+|+++|++....+- .-+...-+.++.+..+. +...+.......- .+....
T Consensus 985 PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~e 1054 (1630)
T 1xi4_A 985 PEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPD 1054 (1630)
T ss_pred HHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHH
Confidence 4444 4567888888999999999988873321 11223334444444444 4455555444432 122444
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHH
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f 251 (798)
+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++. .++.+|..+..++.+.|++++|...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6777778888888888888764 11112222222 667788888888766 34667778888888888888888888
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
.+. .|...|..++..+.+.|++++|++.|...++.. ++......+..++++.++++..... ++ .++...
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHH
Confidence 664 567777778888888888888888887766644 3333333477777777776643333 21 334455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
+..+.+.|...|++++|...|.+. ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 556778888888888888888774 47888888888888888888888766 45567776666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh--cCCHHHHHHHHhhcCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK--LGCVDNALEVFHGTEE 489 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~ 489 (798)
..... +..++..+..++..|.+.|.+++|..+++..+... +.....++-|..+|++ -+++.++.+.|..-..
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 55442 22334445566666666777777777666655443 3344455555555544 3445555555553332
Q ss_pred --------CCcchHHHHHHHHHHcCChHHHH
Q 003746 490 --------KGVSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 490 --------~~~~~~~~li~~~~~~g~~~~A~ 512 (798)
.+...|..++..|.+.|+++.|+
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12345666666666666666666
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-16 Score=162.45 Aligned_cols=274 Identities=9% Similarity=0.015 Sum_probs=179.3
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc-chhH
Q 003746 369 GYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV-ALDQ 444 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~ 444 (798)
.+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.... +.+...+..+...+...| ++++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 33344444444444444321 123334444444455555555555555554431 123334444444445555 5555
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|...+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 555555554432 22345566677777777777777777776553 23556777888888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-------CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR-------LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 522 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
. +.+...+..+...+...|++++|..+++++.+... .+.....+..+...|.+.|++++|.+.+++. ...|
T Consensus 189 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 189 A-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred C-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 2 23345777788888888888888888888876321 1223668888899999999999999988887 2233
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCh
Q 003746 594 -DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA-SKGRW 645 (798)
Q Consensus 594 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 645 (798)
+..+|..+...+...|++++|.+.+++++++.|+++..+..++.++. ..|+.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 57788889999999999999999999999999999888888888873 44543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-17 Score=167.25 Aligned_cols=321 Identities=14% Similarity=0.112 Sum_probs=127.9
Q ss_pred hhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHH
Q 003746 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318 (798)
Q Consensus 239 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 318 (798)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999653 677789999999999999999999888
Q ss_pred HHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 003746 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398 (798)
Q Consensus 319 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 398 (798)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77774 45578899999999999999999888864 66679999999999999999999999987 3788999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
.++.+.|++++|++.++++ .++.||..++.+|...|+++.|...... +...+.....++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv---------- 214 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI---------- 214 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH----------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH----------
Confidence 9999999999999999887 2677888888888888888887433222 112222222344
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACR--HMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 555 (798)
..|.+.|++++|+.+++..... .+. ...|+.+..+++ +-+++.+.++.|..
T Consensus 215 ---------------------~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--- 268 (449)
T 1b89_A 215 ---------------------NYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--- 268 (449)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---
T ss_pred ---------------------HHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence 4445555555555555554432 222 223333333333 33445555555442
Q ss_pred hCCCcC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 556 EHRLEP------NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 556 ~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+-+++| +...|.-++-+|...++++.|...+-+-+ |+..--........+-.+.|.--++..=-++..|
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 234444 47788889999999999999888765552 2322223333344455555544443333333333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=168.97 Aligned_cols=254 Identities=11% Similarity=-0.005 Sum_probs=178.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+...|.+
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555544432 2233344444444445555555555555544443 2234445555555555
Q ss_pred cCCHHHHHHHHhhcCCCC---cchHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 003746 474 LGCVDNALEVFHGTEEKG---VSSWNA---------------LIIGFAMNGLADKSLEMFSEMKKSGVTPN---EITFVG 532 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~---~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ 532 (798)
.|++++|.+.|+++...+ ...+.. .+..+...|++++|+..|+++.+. .|+ ..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHH
Confidence 555555555555443221 111110 133334889999999999999884 444 678889
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG 609 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 609 (798)
+...+...|++++|...|+++++. .| +...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999773 45 4788999999999999999999999987 3334 6889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 610 DHEMGERVGRKLVELQPDH-----------DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
++++|...+++++++.|++ ...+..++.+|...|++++|.+++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999998887 78899999999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-14 Score=160.88 Aligned_cols=365 Identities=12% Similarity=0.043 Sum_probs=256.4
Q ss_pred CCchHHHHHHHHHhh----cCCHHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCchh
Q 003746 226 RNIIASNSMIVLFGR----KGNVAEACRLFKEMPK-KDLVSWSALISCYEQ----NEMYEEALVLFMNMIDHRVMVDEVV 296 (798)
Q Consensus 226 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 296 (798)
.++..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 355556666666665 5666666666655432 244555556666655 566666666666655433
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----CCCHHHHHHHHHhcC-CCChhhHHHHHHHHH
Q 003746 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS----CGEITTAEKLFDAGH-NLDLISWNSMISGYL 371 (798)
Q Consensus 297 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~ 371 (798)
+...+..|..+|.. .+++++|.+.|++.. ..++..+..|...|.
T Consensus 110 -------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 110 -------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF 158 (490)
T ss_dssp -------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333444445554 455666666655422 123445555555555
Q ss_pred h----cCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----
Q 003746 372 K----CGSVEKARALFDAMIE-KDVVSWSTMISGYAQ----HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH---- 438 (798)
Q Consensus 372 ~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---- 438 (798)
. .++.++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+..+...+..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGV 235 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 5 6677777777776543 366777777777777 788888888888887764 44555555555554
Q ss_pred ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHc-----CCh
Q 003746 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAMN-----GLA 508 (798)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~ 508 (798)
.++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+. +...+..+...|... ++.
T Consensus 236 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Confidence 678888888888887764 44566667777777 88999999999987754 566788888888887 899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHH
Q 003746 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG---LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKE 581 (798)
Q Consensus 509 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 581 (798)
++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .+++++
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999865 4456666777776656 889999999999763 357788889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 003746 582 AEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPD---HDGFHVLLSNIHAS 641 (798)
Q Consensus 582 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 641 (798)
|.+.|++.-...+...+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999987323467888999999988 89999999999999999854 66666666665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-16 Score=160.85 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=226.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
++..+..++..+...|++++|+++|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55567778888999999999999999998764 3345566667788899999999999999999875 346778888999
Q ss_pred hHHhcC-CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 470 MYMKLG-CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 470 ~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
.|...| ++++|.+.|++..+. +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 999999999987643 46789999999999999999999999999853 2235677778899999999999
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCChhH
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM----------SPDVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 613 (798)
|.++++++.+ ..| +...+..++..|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++
T Consensus 178 A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 178 AERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999976 345 4788999999999999999999999876 11 2346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999977653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-15 Score=165.04 Aligned_cols=209 Identities=7% Similarity=-0.024 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHh-------cCCHH-------HHHHHHhhcCC---C-CcchHHHHHHHHHHc
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMK-------LGCVD-------NALEVFHGTEE---K-GVSSWNALIIGFAMN 505 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 505 (798)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ + +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4556666666552 3356666666666664 57765 78888887653 2 456788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH-HHhcCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL-LGRAGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 581 (798)
|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|++.++. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45553 36777777777788888888888888652 333 3333332222 335788888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 582 AEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG----FHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 582 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
|..+|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++. .+..........|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876 2234 5778888888888888888888888888887766554 5656666677778888888888777
Q ss_pred HhC
Q 003746 656 VRR 658 (798)
Q Consensus 656 ~~~ 658 (798)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-15 Score=150.25 Aligned_cols=267 Identities=10% Similarity=0.033 Sum_probs=190.3
Q ss_pred hcCCHHHHHHHHHhcCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 447 (798)
..|++..|...++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45555555555555443322 1233345566666666666654433 123445555555556666666666666
Q ss_pred HHHHHHHcCC-CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003746 448 IHAYIRKNGL-KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526 (798)
Q Consensus 448 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 526 (798)
.++.+++.+. +.+...+..+...|.+.|++++|.+.+++ ..+...+..++..|.+.|+.++|++.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 6666665543 23455566677889999999999999998 456778999999999999999999999999985 466
Q ss_pred HHHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 527 EITF---VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 527 ~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
.... ...+..+...|++++|..+|+++++. .+.+...++.+..+|.+.|++++|.+.++++ ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5422 12233344568999999999999875 3446888999999999999999999999997 4445 68899999
Q ss_pred HHHHHHcCChhH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 602 LGACKKHGDHEM-GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 602 ~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999876 5789999999999997544 3455666666655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=163.81 Aligned_cols=257 Identities=10% Similarity=-0.051 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
.|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555432 2234455555555555555555555555555543 224555666666666
Q ss_pred hcCCHHHHHHHHhhcCCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKG-------------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACR 538 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~ 538 (798)
+.|++++|...|+++.+.+ ...+..+...|...|++++|++.|+++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 6777777776666654321 123445578888999999999999999885322 14678889999999
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
..|++++|..+|+++++. .| +...|..++..|.+.|++++|.+.|+++ ...| +..+|..+..+|...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999874 44 5788999999999999999999999987 3345 5889999999999999999999
Q ss_pred HHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 616 RVGRKLVELQPD------------HDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 616 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
..+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998877 366788999999999999999877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-14 Score=157.11 Aligned_cols=394 Identities=11% Similarity=0.065 Sum_probs=268.1
Q ss_pred CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH
Q 003746 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--K-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302 (798)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 302 (798)
.+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.+... |+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 36678888888 4788999999999999865 3 55689999999999999999999999998754 66555555554
Q ss_pred HH-hccCchHHHHH----HHHHHHHh-CCcc-chhHHHHHHHHHHh---------CCCHHHHHHHHHhcCC-CCh---hh
Q 003746 303 AC-ANLTVVKAGTS----VHALAVKI-GIEC-YINLQNALIHMYSS---------CGEITTAEKLFDAGHN-LDL---IS 362 (798)
Q Consensus 303 a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~-~~~---~~ 362 (798)
.. ...|+.+.+++ ++..+++. |..+ +..+|...+....+ .|+++.|.++|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666655 66666654 5543 46778888877665 6889999999988543 221 23
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHhc------C-------CCC--------HHHHHHHHHHHHhC----
Q 003746 363 WNSMISGY-------------LKCGSVEKARALFDAM------I-------EKD--------VVSWSTMISGYAQH---- 404 (798)
Q Consensus 363 ~~~li~~~-------------~~~g~~~~A~~~~~~m------~-------~~~--------~~~~~~li~~~~~~---- 404 (798)
|....... .+.++++.|..++..+ . .++ ...|...+.....+
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 1234566677666541 1 111 24566665443332
Q ss_pred CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------ccchh-------HHHHHHHHHHHcCCCCcHHHHhH
Q 003746 405 DQF----SETLSLFMEMQHHGIRPDEATLVSVISACTH-------LVALD-------QGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 405 g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
++. ++|+.+|++..... +-+...+......+.+ .|+++ +|..+++..++.-.+.+..++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 36777888877642 2345566666665554 57776 77888888776323446777888
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC---Cc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK---GV-SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGA-CRHM 540 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 540 (798)
++..+.+.|++++|..+|++..+. +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 888888888888888888876542 22 36888888888888888888888888774 333 2333332222 3357
Q ss_pred CcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChhH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSPD--VATWGALLGACKKHGDHEM 613 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~ 613 (798)
|+.++|..+|++.++. .| +...+..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.
T Consensus 405 ~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred CChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888764 34 4677888888888888888888888876 22332 4478887887888888888
Q ss_pred HHHHHHHHHhcCCCC
Q 003746 614 GERVGRKLVELQPDH 628 (798)
Q Consensus 614 A~~~~~~~~~~~p~~ 628 (798)
+..+.+++.+..|++
T Consensus 482 ~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 482 ILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCchh
Confidence 888888888888754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-13 Score=151.34 Aligned_cols=336 Identities=12% Similarity=0.012 Sum_probs=274.2
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----CCCHHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCCHH
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS----CGEITTAEKLFDAGH-NLDLISWNSMISGYLK----CGSVE 377 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~ 377 (798)
.++.+.|...+....+.| +...+..|..+|.. .+++++|.+.|++.. ..++..+..|...|.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 445555555555555443 44566778888888 899999999998743 3466778888888888 88999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchhHHHHH
Q 003746 378 KARALFDAMIEK-DVVSWSTMISGYAQ----HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH----LVALDQGKWI 448 (798)
Q Consensus 378 ~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~ 448 (798)
+|...|+...+. ++.++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 999999987654 67788889888887 789999999999998875 56677777777776 7999999999
Q ss_pred HHHHHHcCCCCcHHHHhHHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHH
Q 003746 449 HAYIRKNGLKINSILGTTLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMK 519 (798)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 519 (798)
+....+.| +...+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 99999876 56677788888886 89999999999987654 56678888888888 899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC---CHHHHHHHHHhCCC
Q 003746 520 KSGVTPNEITFVGVLGACRHM-----GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG---MLKEAEELIESMPM 591 (798)
Q Consensus 520 ~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 591 (798)
+.| +...+..+...+... ++.++|..+|++..+. .+...+..|..+|.+.| ++++|.+.|++.-.
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 764 455667777777776 8999999999999763 24567788888888867 88999999998833
Q ss_pred CCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 592 SPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
..+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 360 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 360 KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3578899999999998 899999999999998864 57789999999998 8999999999999988663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=153.47 Aligned_cols=247 Identities=9% Similarity=0.014 Sum_probs=202.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDE--ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+......+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345567999999999876533 34543 3446677899999999999875543 245677888889999999999
Q ss_pred HHHHHHHHhhcCC----C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE----K-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 477 ~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
.++|.+.++++.. + +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998642 3 456778888999999999999999987 3566788888999999999999999999
Q ss_pred HHHHhCCCcCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 552 SMIQEHRLEPNSKHY---GCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99874 4663221 23445566679999999999998 3345788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 003746 627 DHDGFHVLLSNIHASKGRWDD-VLEVRGMMVRRGV 660 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 660 (798)
+++.++..++.++...|++++ +.++++++.+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999986 5788888877543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=161.58 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHhcccchhHHHHHH
Q 003746 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS-LFMEMQHHGI-RP--DEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 374 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~-~p--d~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
+.++.+...|+.+...+.. .+...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3344578888888 7776543211 11 3455777888899999999999999
Q ss_pred HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003746 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526 (798)
Q Consensus 450 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 526 (798)
..+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++... .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 44677888999999999999999999998763 35778999999999999999999999999985 344
Q ss_pred HHH-HHH---------------HHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 527 EIT-FVG---------------VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 527 ~~t-~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
... +.. .+..+...|++++|..+|+++++...-.++...+..++..|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332 211 233444889999999999999875322224788999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334 68899999999999999999999999999999999999999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=163.13 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIG 501 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 501 (798)
+...+......+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999999875 34688899999999999999999999998764 356799999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-----------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++++...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 44432 223457788999999999999999987533222578899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
..|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003746 649 LEVRGMMVRR 658 (798)
Q Consensus 649 ~~~~~~m~~~ 658 (798)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=152.38 Aligned_cols=368 Identities=9% Similarity=-0.027 Sum_probs=202.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC-CccchhHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALI 336 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li 336 (798)
....||.|...+...|++++|++.|++..+. ........ .+....+++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla 101 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYA 101 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHH
Confidence 3457899999999999999999999886541 00000000 011223445555
Q ss_pred HHHHhCCCHHHHHHHHHhc-------CC----CChhhHHHHHHHHHhc--CCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 003746 337 HMYSSCGEITTAEKLFDAG-------HN----LDLISWNSMISGYLKC--GSVEKARALFDAMI---EKDVVSWSTMISG 400 (798)
Q Consensus 337 ~~y~~~g~~~~A~~~~~~~-------~~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~---~~~~~~~~~li~~ 400 (798)
..|...|++++|...+++. .. ....++..+..++.+. +++++|...|++.. +.++..+..+...
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555555431 00 1123344333333333 34666766666553 2244444444433
Q ss_pred ---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 401 ---YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 401 ---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
+...++.++|++.|++..+.. +.+..++..+...+. ..++.++|.+.++...+.. +.+..++..+...|.+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 334566667777777666542 123333333333332 2355666777777666654 3345556667777777
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAM-------------------NGLADKSLEMFSEMKKSGVTPN-EITF 530 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~ 530 (798)
.|++++|...|++..+. +..+|..+...|.. .+..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 77777777777765532 33455555544432 23356777788877764 343 3467
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc----hHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK----HYGCMVDL-LGRAGMLKEAEELIESM-PMSPDVATWGALLGA 604 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 604 (798)
..+...+...|++++|...|+++++. .|+.. .+..+... +...|+.++|++.|++. .+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---
Confidence 77778888889999999999888752 33321 23333332 34678889998888876 555654433322
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceE
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 669 (798)
.+.+.+++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456677888889999999999999999999999999999999988765544444454
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=152.67 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
...|..+...+...|++++|..+|+++. ..+...|..+...+...|++++|+..|+++.... +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555566666666666666666553 2245556666666666666666666666655532 22333444444444
Q ss_pred hcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHH-HH-HHHHcCChHHHHHH
Q 003746 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL-II-GFAMNGLADKSLEM 514 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l 514 (798)
...|++++|...+..+.+..... ...+..+.... ++......+ .. .+...|++++|++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQY-EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-TTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 44444444444444444332110 00010000000 000000111 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++..|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99988753 235668888889999999999999999999763 34 4778899999999999999999999987 333
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 593 P-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD------------HDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 593 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
| +..+|..+...+...|++++|.+.+++++++.|+ ++..+..++.+|...|++++|.++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 6889999999999999999999999999999999 7888999999999999999999988644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=156.44 Aligned_cols=348 Identities=9% Similarity=-0.005 Sum_probs=201.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCc-hhHHHHHHHHh--ccCchHHHHHHHHHHHHhCCccc
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDH-----R-VMVDE-VVVVSVLSACA--NLTVVKAGTSVHALAVKIGIECY 328 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~ 328 (798)
..++|+.+...|...|++++|...|++..+. + ..++. .++...-.++. ..++.+.|...+..+++.. +.+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4568999999999999999999999887542 1 11222 23333333333 3457888999998888765 233
Q ss_pred hhHHHHHHHH---HHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcC---CCCHHHHH
Q 003746 329 INLQNALIHM---YSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLK----CGSVEKARALFDAMI---EKDVVSWS 395 (798)
Q Consensus 329 ~~~~~~li~~---y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~---~~~~~~~~ 395 (798)
+..+..+... +...++.++|.+.+++ ..+.+...+..+...+.. .|+.++|.+.+++.. ..+...|.
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~ 251 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4444444444 4456777788887776 234455556555554443 456778888887653 34677788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+...|...|++++|+..|++..+. .|+ ..++..+..++...+... ... ............
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~ 313 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHH
Confidence 8888888889999998888888775 344 333433333322111000 000 000111112223
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCcHHHHHH
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLG-ACRHMGLVDEGHR 548 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~ 548 (798)
+..+.|...|+...+ .+..+|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|+.
T Consensus 314 ~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 346777777776553 356789999999999999999999999999854333322 2222222 3457899999999
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
.|++.++ +.|+....... .+.+.+++++. ... .+..+|..|...|...|++++|++.|++++++.|
T Consensus 394 ~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999876 56664332222 23334444433 223 4678999999999999999999999999999999
Q ss_pred CCcchHHHHH
Q 003746 627 DHDGFHVLLS 636 (798)
Q Consensus 627 ~~~~~~~~l~ 636 (798)
.+|.....+|
T Consensus 462 ~~p~a~~~~G 471 (472)
T 4g1t_A 462 LIPSASSWNG 471 (472)
T ss_dssp ----------
T ss_pred CCCcHhhcCC
Confidence 9887766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=172.79 Aligned_cols=147 Identities=13% Similarity=0.146 Sum_probs=120.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMI-------EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 432 (798)
..|||+||++||+.|++++|.++|++|. .+|++|||+||.+|++.|+.++|.++|++|...|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3578888888889999999999997763 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcC
Q 003746 433 ISACTHLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----GVSSWNALIIGFAMNG 506 (798)
Q Consensus 433 l~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 506 (798)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 788999999999999999999999998888776555555554433321 1334444556666555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-16 Score=173.94 Aligned_cols=151 Identities=9% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQ---HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 467 (798)
.++||+||.+|++.|+.++|.++|++|. ..|+.||.+||+++|.++++.|++++|.++|+.|.+.|+.||..+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998875 4578889888888888888888888888888888888888888887777
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
|+++++.|+. .++|.++|++|.+.|+.||.+||++++.++.+.+-++..
T Consensus 207 I~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V- 255 (1134)
T 3spa_A 207 LQCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV- 255 (1134)
T ss_dssp HHHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH-
T ss_pred HHHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH-
Confidence 7766665542 245667888999999999999999999877765444443
Q ss_pred HHHHHHHHhCCCcCC------cchHHHHHHHHHhcC
Q 003746 548 RHFNSMIQEHRLEPN------SKHYGCMVDLLGRAG 577 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g 577 (798)
+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 256 ---rkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ---HKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ---GGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ---HHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 33322 34433 556667888888766
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=147.43 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=182.1
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGY 401 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 401 (798)
+...+..+...+.+.|++++|..+|++. .+.+...|..+...+.+.|++++|...|+++. ..+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 4455677888999999999999999873 44567789999999999999999999999874 34678899999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH-Hh-hHHhcCCHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEAT-LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL-ID-MYMKLGCVD 478 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 478 (798)
...|++++|++.|+++... .|+... +..+...+ ++......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 9999999999999999875 343322 22221000 001111112 11 244555666
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+|.+.++++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666655442 234566666666777777777777777766632 22345666667777777777777777777765
Q ss_pred hCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 556 EHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-------------DVATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 556 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
. .| +...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...+++
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 33 3566777777777777777777777765 1122 356777888888888888888888777
Q ss_pred HHhcCC
Q 003746 621 LVELQP 626 (798)
Q Consensus 621 ~~~~~p 626 (798)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 665444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=137.14 Aligned_cols=194 Identities=15% Similarity=0.087 Sum_probs=156.6
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGV 533 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 533 (798)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456667778888899999999999999987643 4678999999999999999999999999984 5654 577888
Q ss_pred HHHHHhc-----------CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003746 534 LGACRHM-----------GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGA 600 (798)
Q Consensus 534 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 600 (798)
..++... |++++|...|++.++ +.|+ ...+..+..+|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 999999999999987 4564 788899999999999999999999987 22278889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=137.70 Aligned_cols=228 Identities=10% Similarity=0.008 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 471 (798)
..|..+...+...|++++|+..|++..... .+...+..+..++...|++++|...+..+++......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 456666666777777777777777666554 4444444444444444444444444444433210000
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
.+.. .....|..+...|...|++++|++.|++.... .|+. ..+...|++++|...++
T Consensus 73 ---~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 73 ---ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH
T ss_pred ---cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH
Confidence 0000 00356777778888888888888888888773 4553 34566788999999999
Q ss_pred HHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 552 SMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 552 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
++.+ ..| +...+..+...|...|++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++++..|++
T Consensus 130 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 130 AEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 8876 344 4677888999999999999999999887 22 3468889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..+..++.+|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=136.40 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMIE--KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD----EATLVS 431 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~~ 431 (798)
...|..+...+...|++++|...|++... .+...|..+...|...|++++|+..|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987632 678899999999999999999999999987642 1112 244444
Q ss_pred HHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHH
Q 003746 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511 (798)
Q Consensus 432 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 511 (798)
+...+...|++++|...+..+.+... + ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~--~--------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHR--T--------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--C--------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc--h--------------------------------------hHHHHHHhHHHHH
Confidence 44455555555555555555444321 1 1234455666777
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 512 LEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+..++++... .|+. ..+..+...+...|++++|...++++++.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777663 3433 356666677777888888888888876631 224677778888888888888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCCcchHHHHHH
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSN 637 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 637 (798)
...| +..+|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 2234 57788889999999999999999999999888 777666655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-13 Score=134.02 Aligned_cols=240 Identities=10% Similarity=-0.111 Sum_probs=175.3
Q ss_pred CCChHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 404 HDQFSETLSLFMEMQHHGIR--P-DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 404 ~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
.|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666554211 1 23445555556666666666666666666553 23566777788888888888888
Q ss_pred HHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Q 003746 481 LEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557 (798)
Q Consensus 481 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 557 (798)
.+.|++..+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887664 3567899999999999999999999999988 4566665555666667789999999999888764
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...+++++++.|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4778888889999999999887 33332 5788999999999999999999999999999987554
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 003746 632 HVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+ +.++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 55778889999887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=131.45 Aligned_cols=238 Identities=10% Similarity=0.021 Sum_probs=124.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCC
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGC 476 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 476 (798)
..+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.+..+ ....+..+...|.+.|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444444444444443321 1112233333334444444444444444444321111 12224445555555555
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 477 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
+++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+.. .+..+...+...+++++|.+.|++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554432 23445666666666666666666666665553 33332 344444233344466666666666
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCChhHHHHHH
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGM---LKEAEELIESM----PMSPD------VATWGALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 618 (798)
+++. .|+ ...+..+...+...|+ +++|...++++ ...|+ ..+|..+...|...|++++|.+.+
T Consensus 168 a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 168 VLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6552 343 4555556666666665 55555555544 11122 246777888888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhc
Q 003746 619 RKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 619 ~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
+++++++|+++...-.+..+....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999988777776554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-12 Score=138.35 Aligned_cols=376 Identities=10% Similarity=0.032 Sum_probs=189.5
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCH---HHHHHHHhcCCCCCcccHHHHHHHHHhcC-----C
Q 003746 204 LAGYVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNV---AEACRLFKEMPKKDLVSWSALISCYEQNE-----M 274 (798)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~ 274 (798)
...+.+.|++++|+++|++..+ .++..+..|..+|...|+. ++|.+.|++..+.+...+..|...+...| +
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3344455556666666555433 2445555566666666666 77777777766556667777776555555 6
Q ss_pred hhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHH---HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHH
Q 003746 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA---GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351 (798)
Q Consensus 275 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 351 (798)
+++|+..|++..+.|... .+..+-..+...+..+. +.+.+......| +......|..+|...+.+++
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~---- 159 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ---- 159 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG----
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc----
Confidence 677888887777755322 33333333332222111 222222222222 22333334444442222111
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHH
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD---QFSETLSLFMEMQHHGIRPDEAT 428 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t 428 (798)
..+.+..+++.....++.++..+...|...| +.++|++.|++....| .++...
T Consensus 160 -----------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 160 -----------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp -----------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred -----------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 3445556666666666667777777777777 7777777777776665 222222
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHH-H--HHc
Q 003746 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG-F--AMN 505 (798)
Q Consensus 429 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~ 505 (798)
+..+...+... ....+++++|.+.|++....+...+..+... | ...
T Consensus 216 ~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 216 VDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 22222222211 1112566666666666552244556666555 3 346
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----c
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-----LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----A 576 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 576 (798)
|++++|++.|++..+.| +...+..+...|. .| ++++|.++|++.. .-+...+..|..+|.. .
T Consensus 265 ~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCC
Confidence 77777777777777765 4455555555555 44 7788888877663 2245666667766665 3
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCChhHHHH
Q 003746 577 GMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS--KGRWDDVLE 650 (798)
Q Consensus 577 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~ 650 (798)
.++++|...|++.-..-+......|...|.. ..|.++|...++++.+..+.. ....+..+... .++.++|.+
T Consensus 336 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~ 413 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQR 413 (452)
T ss_dssp CCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHH
Confidence 3788888888776322344455566666653 357888888888887766543 33334333222 234445555
Q ss_pred HHHHH
Q 003746 651 VRGMM 655 (798)
Q Consensus 651 ~~~~m 655 (798)
+.+.-
T Consensus 414 ~~~~~ 418 (452)
T 3e4b_A 414 LVQQE 418 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-12 Score=126.27 Aligned_cols=197 Identities=12% Similarity=-0.013 Sum_probs=140.7
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555666666677777777777766543 245567777777777777777777777777642 22445667777777
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 614 (798)
...|++++|.++++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877754 223443 566777777788888888888887776 2223 567777888888888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++++++..|++...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888887778888888888888888888888776643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-12 Score=121.79 Aligned_cols=197 Identities=13% Similarity=-0.010 Sum_probs=153.7
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
+...+..+...|.+.|++++|.+.|+...+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777777888888888888876553 345678888888888888888888888887742 2345577777888
Q ss_pred HHhc-CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 537 CRHM-GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 537 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
+... |++++|..+++++.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 333443 567778888888889999988888876 2233 5778888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 613 MGERVGRKLVELQP-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 613 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998888 88888888888888889999998888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-12 Score=133.49 Aligned_cols=242 Identities=11% Similarity=0.020 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccc-hhHHHHHHHHHHHcCCCCcHHHHhHHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILGTTLI 468 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 468 (798)
...|+.+...+.+.|++++|+..|++.... .| +...+..+..++...|+ +++|...++.+++... .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 456777788888888888888888888774 34 45566677777777885 8888888888887653 3667788888
Q ss_pred hhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCcH
Q 003746 469 DMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRH-MGLV 543 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~ 543 (798)
.+|.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888888999999998887764 35678999999999999999999999999884 454 4578888888888 5665
Q ss_pred HHH-----HHHHHHHHHhCCCcCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-----
Q 003746 544 DEG-----HRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAG--MLKEAEELIESMPMSP-DVATWGALLGACKKHG----- 609 (798)
Q Consensus 544 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g----- 609 (798)
++| +..|+++++ +.|+ ...|..+..+|.+.| ++++|.+.++++...| +...+..++..|...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 588888876 4664 778888888898888 6899999888874445 5678888888888764
Q ss_pred ---C-hhHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 003746 610 ---D-HEMGERVGRKL-VELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 610 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~ 640 (798)
+ .++|+++++++ .+++|....+|..++..+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 8999999888888876654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-11 Score=122.03 Aligned_cols=223 Identities=10% Similarity=-0.030 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchhHHHHHHHHHHHcCCCCcHHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH----LVALDQGKWIHAYIRKNGLKINSILGT 465 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (798)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666666677777777776666522 23334444444444 455555555555544443 333444
Q ss_pred HHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 466 TLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 466 ~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
.+..+|.. .|++++|.+.|++..+. +..++..+...|.. .|++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444444 45555555444443322 23344444444444 444455555554444432 22333333334
Q ss_pred HHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 003746 537 CRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----H 608 (798)
Q Consensus 537 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 608 (798)
+.. .+++++|..+|++..+. .+...+..+...|.. .
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence 433 44444444444444331 233444445555555 5
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 659 (798)
+++++|+..++++++..| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555443 3444555555555 555555555555554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-11 Score=121.19 Aligned_cols=192 Identities=9% Similarity=-0.067 Sum_probs=161.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVL 534 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 534 (798)
+...+..+...|.+.|++++|.+.|++..++ +..++..+...|.. .|++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4455666777888888899998888877655 45678888888888 999999999999998875 667788888
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003746 535 GACRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESMPMSPDVATWGALLGACK 606 (798)
Q Consensus 535 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 606 (798)
..+.. .+++++|.++|++..+. + +...+..+..+|.+ .|++++|.+.+++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888 99999999999999763 2 67788889999999 9999999999998722236778888988998
Q ss_pred H----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 607 K----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 607 ~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
. .+++++|+..++++++.. ++..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 8 899999999999999874 46788999999999 9999999999999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-11 Score=120.31 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...|..+...|...|++++|++.|+++.... +.+. ..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence 4567777777888888888888887776542 1123 334445555
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHH
Q 003746 471 YMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 546 (798)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 23456667777777778888888888877764345544 4667777888888999999
Q ss_pred HHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 547 HRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+++++.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|.+.++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999888763 34 4677888899999999999999999887 333 4677888899999999999999999999999
Q ss_pred cCCCCcchHHH
Q 003746 624 LQPDHDGFHVL 634 (798)
Q Consensus 624 ~~p~~~~~~~~ 634 (798)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=126.05 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=142.0
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
....+..+...+.+.|++++|...|++..+. +...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4455666777778888888888888876543 45678888888888888888888888888742 2345677778888
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999988887632 235677888888888999999999888876 22 23677888888888999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888888889999999999999999998887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-12 Score=138.64 Aligned_cols=261 Identities=11% Similarity=0.013 Sum_probs=178.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhcccchhHHHHHHHHHHHc----C-CCCcHHHHh
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPD-E----ATLVSVISACTHLVALDQGKWIHAYIRKN----G-LKINSILGT 465 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 465 (798)
.+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...+..+++. + .......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555666666666666655542 22 1 23444455555566666666655555432 1 112334566
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEK---------GVSSWNALIIGFAMNGL-----------------ADKSLEMFSEMK 519 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 519 (798)
.+...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6677777777777777777654421 13467777888888888 888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 520 KS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 520 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11122 236777778888999999999999988653211112 237788999999999999999998876
Q ss_pred ---CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 590 ---PMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 590 ---~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+... ...+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 25678889999999999999999999998875433 3478889999999999999999999887
Q ss_pred hC
Q 003746 657 RR 658 (798)
Q Consensus 657 ~~ 658 (798)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-12 Score=135.76 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=166.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPD----EATLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILG 464 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 464 (798)
|......+...|++++|+..|++....+. .+ ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444444444555555555544444311 11 123333444444445555555444443322 111 123345
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCC--------------------hHHHHHHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGL--------------------ADKSLEMF 515 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 515 (798)
..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55666667777777777666654421 1 2367777777777787 78888877
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 003746 516 SEMKKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 516 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++.... +..|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775441 11222 235677778888889999999998888653211122 337788888999999999999888
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHH
Q 003746 587 ESM----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 587 ~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
++. +..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876 11122 5577888889999999999999999998765443 457778999999999999999999
Q ss_pred HHHHh
Q 003746 653 GMMVR 657 (798)
Q Consensus 653 ~~m~~ 657 (798)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-12 Score=136.41 Aligned_cols=343 Identities=11% Similarity=0.029 Sum_probs=206.1
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH---HHHHHHHHhcCCCChhhHHHHHHHHHhcC--
Q 003746 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI---TTAEKLFDAGHNLDLISWNSMISGYLKCG-- 374 (798)
Q Consensus 300 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 374 (798)
+.....+.|+++.|...+..+.+.| +...+..|..+|...|+. ++|.+.|++....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566788889999988888776 333445566677777777 88888888765556667777777555554
Q ss_pred ---CHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHH
Q 003746 375 ---SVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFS---ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447 (798)
Q Consensus 375 ---~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 447 (798)
+.++|...|++..++ +...+..|...|...+..+ ++.+.+.+....|. ......+...+...+.++.+..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 677888888776544 4456777777777665533 44555555554443 3344445555555554444443
Q ss_pred HHHHHHHcCCCCcHHHHhHHHhhHHhcC---CHHHHHHHHhhcCCCCc---chHHHHHHHHHHc----CChHHHHHHHHH
Q 003746 448 IHAYIRKNGLKINSILGTTLIDMYMKLG---CVDNALEVFHGTEEKGV---SSWNALIIGFAMN----GLADKSLEMFSE 517 (798)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~----g~~~~A~~l~~~ 517 (798)
....+.+.-...++..+..|..+|.+.| +.++|.+.|++..+.+. ..+..+...|... +++++|++.|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 3333332222233346777888888888 78888888887665432 2335666666544 578888888888
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC-----CHHHHHHHHHhC
Q 003746 518 MKKSGVTPNEITFVGVLGA-C--RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG-----MLKEAEELIESM 589 (798)
Q Consensus 518 m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 589 (798)
.. .| +...+..+... + ...++.++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 76 32 33344444444 3 4577888888888887652 3 5566667777776 45 888888888888
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 590 PMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 590 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
- ..+...+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7 5567777777776665 33788888888887763 456677788888775 4578888888888877664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-12 Score=124.98 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
....|..+...+...|++++|+..|+++... .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445666666777777777777777776653 22 12334444555
Q ss_pred hHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
.|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55556666666666655432 245567777777888888888888888887743 23455777788888889999999
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999888763 2235778888899999999999999999887 223 46788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHH
Q 003746 625 QPDHDGFHVLLSNIHA 640 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~ 640 (798)
.|+++..+..++.+..
T Consensus 223 ~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGH 238 (243)
T ss_dssp CTTCHHHHHHHTC---
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999888777665443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-12 Score=130.54 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=168.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHHhHH
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPD-----EATLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILGTTL 467 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 467 (798)
...+...|++++|+..|+++.... |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555544432 21 123334444444455555555544443322 111 123455566
Q ss_pred HhhHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEE-----KG----VSSWNALIIGFAMNGL--------------------ADKSLEMFSEM 518 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 518 (798)
...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777777665432 11 2367777777777787 78888877776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 519 KKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 519 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
... +..|. ...+..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 11122 235677778888899999999999888653211112 347788889999999999999998876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 590 ----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 590 ----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 5577888899999999999999999998865543 336778999999999999999999988
Q ss_pred HhC
Q 003746 656 VRR 658 (798)
Q Consensus 656 ~~~ 658 (798)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-10 Score=124.52 Aligned_cols=449 Identities=9% Similarity=0.043 Sum_probs=260.9
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 003746 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---LSAAR 186 (798)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~ 186 (798)
....+.+..|++.+... +-|..+|..+++.+.+.+++..++.+++.+++. ++.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34556666667666554 568888999999988888999999999999887 47778888888888888888 99999
Q ss_pred HHHccCC--C---CCcchHHHHHHHHHhCCCH----HHHH----HHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 187 KLFDESP--V---LDLVSWNSILAGYVNADNV----EEAK----FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 187 ~~f~~~~--~---~d~~~~~~li~~~~~~g~~----~~A~----~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
.+|++.. . +++..|...+.-..+.++. +++. ++|+... ....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl------------------------~~vG- 178 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVV------------------------DKCA- 178 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHH------------------------HHTT-
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH------------------------HHhC-
Confidence 9998754 2 6666777766654443332 2222 3333211 0000
Q ss_pred CCCC-CcccHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 003746 254 MPKK-DLVSWSALISCYE---------QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323 (798)
Q Consensus 254 ~~~~-~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 323 (798)
+-.+ +...|...+.-.. .+++.+.+..+|++.+......-..+|..... +.+.-+...+..+....
T Consensus 179 ~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~--- 254 (679)
T 4e6h_A 179 IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL--- 254 (679)
T ss_dssp TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---
T ss_pred cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---
Confidence 0011 1223444443222 22345566666666653111000111111000 00000000011111110
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHh------cCC----CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDA------GHN----LDLISWNSMISGYLKCGSVEKARALFDAMIE----- 388 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 388 (798)
..+++.|...+.. ... ....+.+ ....+.
T Consensus 255 ------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~------------------~~~~p~~~~~~ 298 (679)
T 4e6h_A 255 ------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQAT------------------ESNLPKPNEYD 298 (679)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC------------------TTTSCCTTCCC
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHhHhhccccccccch------------------hccCCCCchhH
Confidence 0011122222211 000 0000000 000000
Q ss_pred -CCHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHH-HHHHHHHHcCCCC
Q 003746 389 -KDVVSWSTMISGYAQHD-------QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKI 459 (798)
Q Consensus 389 -~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~ 459 (798)
.....|...+.---.++ ..+.+..+|++.... ..-+...|.....-+...|+.+.|. .+++..+.. .+.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 01233444444332222 122345566666554 2334555555555566667777775 788777764 344
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-------------------------CcchHHHHHHHHHHcCChHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK-------------------------GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
+..++-..+....+.|+++.|.++|+.+... ....|-..+....+.|..+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666777777778888888888888766531 123688888888888999999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 003746 515 FSEMKKS-GVTPNEITFVGVLGACRHM-GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM 591 (798)
Q Consensus 515 ~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 591 (798)
|.+..+. +. +....|......-.+. ++.+.|..+|+..++.+ +-+...+...++.....|+.+.|..+|++. ..
T Consensus 457 f~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999875 21 1233343333222333 55899999999998863 334666778899899999999999999997 22
Q ss_pred CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 592 SP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 592 ~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 23 3568999999999999999999999999999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=115.71 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=137.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGC 568 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 568 (798)
+...|..+...|...|++++|++.|++..+. .|+. ..+..+..++.+.|++++|...+..+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 3456888888888888888888888888874 5554 47788888888999999999999888663 34 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 646 (798)
+...+...+++++|.+.+++. ...| +..+|..+...+...|++++|++.++++++++|+++.++..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888888999999999988877 3334 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 003746 647 DVLEVRGMMVRRG 659 (798)
Q Consensus 647 ~a~~~~~~m~~~~ 659 (798)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-11 Score=116.22 Aligned_cols=207 Identities=12% Similarity=0.066 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
+...|..+...+...|++++|++.|+++.... +.+.. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHH
Confidence 45567777777777777777777777766542 11233 3444555
Q ss_pred hHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 470 MYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMN-GLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
.|...|++++|.+.|++..+ .+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 55555666666555555432 2345667777777788 888888888888877434454 346777778888889999
Q ss_pred HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 545 EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-S-PDVATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
+|...++++.+. .| +...+..++..|.+.|++++|.+.++++ .. + .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999998888763 34 4677888888999999999999998887 22 2 4667777788888899999999999999
Q ss_pred HHhcCCCCcchHHHH
Q 003746 621 LVELQPDHDGFHVLL 635 (798)
Q Consensus 621 ~~~~~p~~~~~~~~l 635 (798)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999988766554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-12 Score=132.07 Aligned_cols=225 Identities=10% Similarity=0.063 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC-HHHHHHHHhhcCC---CCcchHHHHHHHH
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC-VDNALEVFHGTEE---KGVSSWNALIIGF 502 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 502 (798)
..+..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++... .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 445666677788999999999999999875 3467888999999999997 9999999998774 3567999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh-cCCH
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR-AGML 579 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 579 (798)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+++++ +.| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999984 555 45888899999999999999999999987 456 47889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------
Q 003746 580 KEA-----EELIESM-PMSP-DVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG------- 643 (798)
Q Consensus 580 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 643 (798)
++| ++.+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..|+.+|...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777766 4445 6789999999999888 689999999998 999999999999999999875
Q ss_pred --ChhHHHHHHHHH-HhC
Q 003746 644 --RWDDVLEVRGMM-VRR 658 (798)
Q Consensus 644 --~~~~a~~~~~~m-~~~ 658 (798)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999988 553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=117.85 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=92.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003746 358 LDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434 (798)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 434 (798)
++...|..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++.... .|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence 3444555555555555555555555554422 23445555555555555555555555555443 222
Q ss_pred HHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc-----------CCHHHHHHHHhhcCC---CCcchHHHHHH
Q 003746 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-----------GCVDNALEVFHGTEE---KGVSSWNALII 500 (798)
Q Consensus 435 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~ 500 (798)
+...+..+...|.+. |++++|...|++..+ .+...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 222333333333333 555555555555432 23445555566
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 579 (798)
.|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+++++ ..| +...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence 6666666666666666666544 4455555566666666666666666666654 234 345555556666666666
Q ss_pred HHHHHHHHhC
Q 003746 580 KEAEELIESM 589 (798)
Q Consensus 580 ~~A~~~~~~~ 589 (798)
++|.+.+++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-12 Score=133.80 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=178.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAG---HNLD----LISWNSMISGYLKCGSVEKARALFDAMIEK---------DV 391 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~ 391 (798)
....+..+...+.+.|++++|...|++. .+.+ ...|..+...+...|++++|...|++.... ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556666777777777777776652 1112 234555556666666666666665554210 13
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
.+|..+...|...|++++|+..+++....... ++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 34555555666666666666666555432100 010 0012234444555
Q ss_pred HHhcCC--------------------HHHHHHHHhhcCC-----C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 471 YMKLGC--------------------VDNALEVFHGTEE-----K----GVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 471 ~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|...|+ +++|.+.+++... . ...+|..+...|...|++++|+..|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 5555555543321 1 1236777778888888888888888877642
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 003746 522 GV-TPN----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM--- 589 (798)
Q Consensus 522 g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 589 (798)
.. .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 122 126777778888899999999999887653111111 567788889999999999999998876
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCChh
Q 003746 590 -PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQP------DHDGFHVLLSNIHASKGRWD 646 (798)
Q Consensus 590 -~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 646 (798)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 55788899999999999999999999987633 33456777888888877664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-11 Score=121.62 Aligned_cols=227 Identities=7% Similarity=-0.061 Sum_probs=184.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCc----chHHHHHHH
Q 003746 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGV----SSWNALIIG 501 (798)
Q Consensus 428 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 501 (798)
.+......+...|++++|...+..+++... .+...+..+...|.+.|++++|.+.|++..+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556677889999999999999998753 3455778888899999999999999998765 222 248999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 580 (798)
|...|++++|++.|++..+.. +.+...+..+...+...|++++|...|+++++ ..| +...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999852 22446888999999999999999999998864 456 4677777873444456999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCChhH
Q 003746 581 EAEELIESM-PMSP-DVATWGALLGACKKHGD---HEMGERVGRKLVELQ---PDH-----DGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 581 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 647 (798)
+|.+.|+++ ...| +...|..+...+...|+ .++|...+++++++. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 3344 47788889999988888 889999999999865 542 2578889999999999999
Q ss_pred HHHHHHHHHhCC
Q 003746 648 VLEVRGMMVRRG 659 (798)
Q Consensus 648 a~~~~~~m~~~~ 659 (798)
|.+.+++..+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998744
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=139.33 Aligned_cols=207 Identities=10% Similarity=0.009 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH-HHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV-DNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEM 518 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 518 (798)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444443332 234566777777788888888 888888877653 34668899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc--------CCHH
Q 003746 519 KKSGVTPNEITFVGVLGACRHM---------GLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA--------GMLK 580 (798)
Q Consensus 519 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~ 580 (798)
.+. .|+...+..+...+... |++++|.+.|+++++ +.| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 884 68877888888999999 999999999999987 356 478889999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 581 EAEELIESM-PMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 581 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+|.+.|++. ...| +...|..+..+|...|++++|++.++++++++|+++..+..++.++...|++++|.+.++++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 3345 78899999999999999999999999999999999999999999999999999999766443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=122.91 Aligned_cols=217 Identities=14% Similarity=0.016 Sum_probs=179.3
Q ss_pred hcccchhHHHHHHHHHHHcCC---CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHH
Q 003746 437 THLVALDQGKWIHAYIRKNGL---KINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 510 (798)
...+++++|...+..+++... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999988642 22567888899999999999999999998764 357789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 511 SLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 511 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|++.|++..+. .| +...+..+...+...|++++|..+|+++.+ +.|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999985 34 467888899999999999999999999976 4566555555666667889999999999766
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 590 --PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 590 --~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
..+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2233444444 777777888899999999999987764 36788999999999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=139.68 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 569 (798)
..+|+.|...|.+.|++++|++.|++.++ +.|+. ..+..+..++.+.|++++|.+.|+++++ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45788888888899999999999998888 46664 5788888999999999999999999876 5675 7888999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
..+|.+.|++++|++.|++. .+.| +..+|..+..++...|++++|++.++++++++|+++..+..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 4455 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003746 648 VLEVRGMMVR 657 (798)
Q Consensus 648 a~~~~~~m~~ 657 (798)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-11 Score=128.34 Aligned_cols=267 Identities=12% Similarity=0.075 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcC---CCCh----hhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHH
Q 003746 330 NLQNALIHMYSSCGEITTAEKLFDAGH---NLDL----ISWNSMISGYLKCGSVEKARALFDAMIEK---------DVVS 393 (798)
Q Consensus 330 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~ 393 (798)
..+..+...+...|++++|.+.|++.. +.+. ..|..+...|...|++++|...|++.... ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344556667777777777777776521 2222 35666666677777777777766655321 2345
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYM 472 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~ 472 (798)
|..+...|...|++++|+..|++.....- +.+ ......++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 66666666666777777766666543200 000 0111223444444555
Q ss_pred hcCC-----------------HHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 003746 473 KLGC-----------------VDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TP 525 (798)
Q Consensus 473 ~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 525 (798)
..|+ +++|.+.+++..+ + ...+|..+...|...|++++|++.|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555544321 1 123677777778888888888888877765211 11
Q ss_pred C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC
Q 003746 526 N----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDLLGRAGMLKEAEELIESM-PM---SP 593 (798)
Q Consensus 526 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p 593 (798)
+ ...+..+...+...|++++|..+++++.+...-.. ....+..+...|.+.|++++|.+.+++. .. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 12667777888889999999999888765321111 1467778889999999999999998876 11 11
Q ss_pred C----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 594 D----VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 594 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+ ..++..+...|...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 447888999999999999999999999987664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.3e-11 Score=122.89 Aligned_cols=265 Identities=10% Similarity=0.052 Sum_probs=156.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAG---HNLD----LISWNSMISGYLKCGSVEKARALFDAMIEK---------DVVSWS 395 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~ 395 (798)
+......+.+.|++++|...|++. .+.+ ...|..+...+...|++++|...|++.... ...+|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334455666666666666666542 1112 234555555556666666666555543211 123455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+...|...|++++|+..+++...... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555555555556555555555433110 00100 0122344444555555
Q ss_pred CC--------------------HHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 003746 475 GC--------------------VDNALEVFHGTEE-----KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-T 524 (798)
Q Consensus 475 g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 524 (798)
|+ +++|.+.+++... .+ ..++..+...|...|++++|++.+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 11 23567777778888888888888877654210 1
Q ss_pred CC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-C---CC
Q 003746 525 PN----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-P---MS 592 (798)
Q Consensus 525 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~ 592 (798)
++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 126677777888889999999988887653111111 556778888999999999999988876 1 11
Q ss_pred CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 593 PD----VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 593 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 447888999999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-11 Score=110.58 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=141.9
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 535 (798)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999998764 35678999999999999999999999998875 344 446677778
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
.+...++++.+...+.+..+ ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88899999999999999876 345 4778889999999999999999999987 3444 6889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 003746 613 MGERVGRKLVELQPDHD 629 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~ 629 (798)
+|++.++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=112.38 Aligned_cols=218 Identities=9% Similarity=-0.000 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cccch-------hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 408 SETLSLFMEMQHHGIRPDEATLVSVISACT-------HLVAL-------DQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 408 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
++|+..|++..... +-+...+......+. ..|++ ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223334444444333 23554 6677777777663123355577777777788
Q ss_pred cCCHHHHHHHHhhcCCC---Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCcHHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVS-SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR-HMGLVDEGHR 548 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 548 (798)
.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888776542 233 68888888888888888888888887743 223334443333322 3688888888
Q ss_pred HHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 549 HFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P---MSP--DVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 549 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
+|+++++. .| +...|..+++.+.+.|++++|..+|++. . ++| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888763 34 4677788888888888888888888877 2 344 3567888888888888888888888888
Q ss_pred HhcCCCCcc
Q 003746 622 VELQPDHDG 630 (798)
Q Consensus 622 ~~~~p~~~~ 630 (798)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=126.15 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc------C-C
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHH-------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN------G-L 457 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~-~ 457 (798)
.+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44555666666666666666666655442 11112233333444444445555554444444332 1 1
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS----- 521 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 521 (798)
+.....+..+...|...|++++|.+.|++..+. ....|..+...|...|++++|++.|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666665543311 1223444455555555555555555554432
Q ss_pred -CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003746 522 -GVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593 (798)
Q Consensus 522 -g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 593 (798)
+..|+. .++..+...+...|++++|.++++++.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 112221 133444444444455555555554443310 00010000000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....+..+...+...+.+.++...++++....|....++..++.+|...|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222233334445566666667777666777777777777777777777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-08 Score=114.10 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=93.6
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhCC-CCchhHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS---VFEGKLIHDHVLKAGF-DSDVYVN 169 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 169 (798)
.|..+|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+..+|+..+.... +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58889999999999999999999999999965 45555667777777778888 9999999999988652 4788899
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHccCC------CC-CcchHHHHHHHHHh---------CCCHHHHHHHHhhCCC
Q 003746 170 NTLINMYAVCGDL--------SAARKLFDESP------VL-DLVSWNSILAGYVN---------ADNVEEAKFIYNKMPE 225 (798)
Q Consensus 170 ~~li~~y~~~g~~--------~~A~~~f~~~~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 225 (798)
..-+....+.++. +..+++|+... .+ +...|...+.-... +++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888777666654 33447776521 22 23467766654332 2345666777776664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-10 Score=120.07 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-----SPD-VAT 597 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~ 597 (798)
++..+...+...|++++|.+++++..+- .+..| ....+..+...|.+.|++++|.+.+++. .. .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445555555555555555554331 01112 2344555555555555555555555443 00 111 112
Q ss_pred HHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 598 WGALLGACKKHGD---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 598 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..+...+...|+ .++|+..+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444455555 44444444443 2233333455556666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=123.42 Aligned_cols=288 Identities=9% Similarity=0.014 Sum_probs=209.2
Q ss_pred HHhCCCHHHHHHHHHh------cC--CCChhhHHHHHHH--HHhcCCHHHHH-----------HHHHhcCCC--CHHH--
Q 003746 339 YSSCGEITTAEKLFDA------GH--NLDLISWNSMISG--YLKCGSVEKAR-----------ALFDAMIEK--DVVS-- 393 (798)
Q Consensus 339 y~~~g~~~~A~~~~~~------~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~--~~~~-- 393 (798)
+.+.+++++|..++++ .. .++...|-.++.. ....+.++.+. ..++.+... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 5689999999999875 22 2333444444432 12223344444 555554321 1111
Q ss_pred ----HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccchhHHHHHHHHHHHcC--C----C
Q 003746 394 ----WSTMISGYAQHDQFSETLSLFMEMQHH----GIRP-DEATLVSVISACTHLVALDQGKWIHAYIRKNG--L----K 458 (798)
Q Consensus 394 ----~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~ 458 (798)
|......+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.. . .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 122556678899999999999998763 1122 23567778888899999999999999887641 1 1
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTP 525 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 525 (798)
....+++.+...|...|++++|.+.|++..+. + ..+|..+...|...|++++|++.|++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12457788889999999999999999876531 2 247889999999999999999999998772 3324
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--cC-CcchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHH
Q 003746 526 N-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL--EP-NSKHYGCMVDLLGRAGM---LKEAEELIESMPMSPD-VAT 597 (798)
Q Consensus 526 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 597 (798)
+ ..++..+...+...|++++|..++++..+...- .| ....+..+...|...|+ +++|..++++.+..|+ ..+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4 347888889999999999999999998753211 12 13346778889999999 9999999999965544 447
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...|...|++++|...+++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999987543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-10 Score=106.20 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 574 (798)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444455555555555555444321 123334555555555666666666666665542 1123455566666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 575 RAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12356677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 003746 653 GMMVRR 658 (798)
Q Consensus 653 ~~m~~~ 658 (798)
+...+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-10 Score=110.57 Aligned_cols=162 Identities=12% Similarity=0.029 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL 572 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 572 (798)
.|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++.++ ..|+ ...+..+...
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHH
Confidence 33344444444444444444444444432213333333344444444444444444444433 2232 3344444444
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHh
Q 003746 573 LGRAGMLKEAEELIESM-PMSP-DV-------ATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSNIHAS 641 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 641 (798)
|.+.|++++|.+.+++. ...| +. .+|..+...+...|++++|+..++++++++|+ ++..+..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 44444444444444443 1112 12 23444444444445555555555555555554 44444444444444
Q ss_pred cCC---------------------------hhHHHHHHHHHHhC
Q 003746 642 KGR---------------------------WDDVLEVRGMMVRR 658 (798)
Q Consensus 642 ~g~---------------------------~~~a~~~~~~m~~~ 658 (798)
.|+ +++|...+++..+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444 48888888888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-10 Score=108.99 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIG 501 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 501 (798)
|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 456666677777778888888888888877765455566666777778888888888877776543 34567777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC---cchHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNE--------ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN---SKHYGCMV 570 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 570 (798)
|...|++++|++.|++..+. .|+. ..|..+...+...|++++|.+.|+++++ +.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 88888888888888877763 4442 2355566666777777888887777754 3454 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 571 DLLGRAGML--KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 571 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
..|...|+. ++|..+. ..+...+..+. ....+.+++|+..+++++++.|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666555433 2222111 12233333222 23445679999999999999999988887777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-09 Score=109.92 Aligned_cols=260 Identities=11% Similarity=-0.063 Sum_probs=171.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHHhHHH
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEA----TLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILGTTLI 468 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 468 (798)
...+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+. +.. ........+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555667777777766665543111221 2333444555667777776666665542 110 0122345566
Q ss_pred hhHHhcCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEE-------K----GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT--P--NEITFVGV 533 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 533 (798)
..|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777888888888888776542 1 1235666778888899999999999988763221 1 12456777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-----CMVDLLGRAGMLKEAEELIESM-PMSPD-----VATWGALL 602 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~ 602 (798)
...+...|++++|..++++......-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888899999999999998865321111111122 2335577999999999999988 22221 33567788
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
..+...|++++|...++++++..+.. ...+..++.+|...|+.++|.+.++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999999998754321 23667789999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=112.39 Aligned_cols=212 Identities=8% Similarity=-0.027 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHH-------hcCCH-------HHHHHHHhhcCC---C-CcchHHHHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYM-------KLGCV-------DNALEVFHGTEE---K-GVSSWNALIIGFAM 504 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 504 (798)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... + +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 446677777777765 35885 899999998665 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHH-hcCCHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLG-RAGMLK 580 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 580 (798)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+++++ ..| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 466543 788888999999999999999999976 334 3455544444422 379999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 581 EAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVEL---QPD-HDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 581 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
+|.++|++. ... .+...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 222 36889999999999999999999999999985 553 666888889999999999999999999
Q ss_pred HHhCCC
Q 003746 655 MVRRGV 660 (798)
Q Consensus 655 m~~~~~ 660 (798)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 887544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-09 Score=110.23 Aligned_cols=228 Identities=12% Similarity=-0.007 Sum_probs=102.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcccchhHHHHHHHHHHHcC--C---C-CcHHHHh
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGI-RPD----EATLVSVISACTHLVALDQGKWIHAYIRKNG--L---K-INSILGT 465 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 465 (798)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777654311 122 2234444445555555555555555444320 0 0 0122334
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhc
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTPN-EITFVGVLGACRHM 540 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~ 540 (798)
.+...|...|++++|.+. |++..+. +-.+. ..++..+...+...
T Consensus 187 ~lg~~y~~~~~~~~A~~~-------------------------------~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPH-------------------------------LEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 444444455555555444 4443321 10000 12344444455555
Q ss_pred CcHHHHHHHHHHHHHhC---CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC
Q 003746 541 GLVDEGHRHFNSMIQEH---RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM----PM--SPD-VATWGALLGACKKHGD 610 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~ 610 (798)
|++++|.+++++.++-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555555544310 11111344445555555555555555555443 10 111 1223333333344444
Q ss_pred ---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 611 ---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 611 ---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.++|+..+++. ...|+....+..++.+|...|++++|.+.+++..
T Consensus 316 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444431 1222333344556666666666666666665554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=121.49 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=156.8
Q ss_pred CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 003746 476 CVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLA-DKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHF 550 (798)
Q Consensus 476 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 550 (798)
.++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665543 3567899999999999999 9999999999984 555 568899999999999999999999
Q ss_pred HHHHHhCCCcCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 003746 551 NSMIQEHRLEPNSKHYGCMVDLLGRA---------GMLKEAEELIESM-PMSP-DVATWGALLGACKKH--------GDH 611 (798)
Q Consensus 551 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~ 611 (798)
+++++ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+..+|... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99975 568888899999999999 9999999999987 3344 688999999999998 999
Q ss_pred hHHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 612 EMGERVGRKLVELQP---DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987644
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=101.01 Aligned_cols=168 Identities=14% Similarity=0.003 Sum_probs=143.0
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788899999999999999988754 46688899999999999999999999998852 33456788888999
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999774 2335778889999999999999999999987 22 346788999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 003746 616 RVGRKLVELQPDHDGF 631 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~ 631 (798)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=118.92 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------C---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC-
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIE--------K---DVVSWSTMISGYAQHDQFSETLSLFMEMQHH------GIRP- 424 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p- 424 (798)
|..+...+...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +-.|
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 33444444455555555555544422 1 2345666667777777777777777766543 2122
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHc------CC-CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-------
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKN------GL-KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK------- 490 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 490 (798)
...++..+...+...|++++|...+..+.+. +. +.....+..+...|.+.|++++|.+.|++..+.
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2445566666677777777777777776654 22 234556778889999999999999999876532
Q ss_pred -C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH
Q 003746 491 -G---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566 (798)
Q Consensus 491 -~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 566 (798)
+ ..+|..+...|...|++++|++.|+++.+.. |+. .+..+- ....... .....+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~~~~~ 247 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MHAEER 247 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HHHHHH
Confidence 2 3478889999999999999999999998731 110 000000 0000000 011122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 567 GCMVDLLGRAGMLKEAEELIESMP-MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|.+.+++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 223334445566666666666662 233 4667889999999999999999999999988775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-09 Score=105.85 Aligned_cols=204 Identities=10% Similarity=-0.000 Sum_probs=134.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---G---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPN-EITFV 531 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 531 (798)
+...+-.+...+.+.|++++|...|+.+.+. + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666677777777777777776543 2 34566667777777777777777777776321 112 22455
Q ss_pred HHHHHHHh--------cCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 003746 532 GVLGACRH--------MGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602 (798)
Q Consensus 532 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 602 (798)
.+..++.. .|++++|...|+++++. .|+ ......+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 67777777777777653 233 22222221111111100 11256778
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCccceE
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASK----------GRWDDVLEVRGMMVRRGVVKIPGCSMI 669 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i 669 (798)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------- 227 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-------- 227 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC--------
Confidence 889999999999999999999999854 4788899999877 9999999999998874432
Q ss_pred EECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
+|...++...+.++...+.+
T Consensus 228 ---------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 ---------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------CTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-09 Score=111.43 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=141.9
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CCC-HHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSG--V---TPN-EITFV 531 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p~-~~t~~ 531 (798)
....+...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+.. . .+. ..++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566778888888888765431 2 3467888888999999999999998876521 1 111 33678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhC---CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCC-CHHHHHH
Q 003746 532 GVLGACRHMGLVDEGHRHFNSMIQEH---RLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P-----MSP-DVATWGA 600 (798)
Q Consensus 532 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~ 600 (798)
.+...|...|++++|.+.|++.++.. +-.+ ....+..+...|...|++++|.+.+++. . ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 88899999999999999999987632 2222 2567889999999999999999999886 2 334 3667889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCC---hhHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPD-----HDGFHVLLSNIHASKGR---WDDVLEVRGM 654 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 654 (798)
+...+...|++++|...+++++++.+. ....+..+..+|...|+ .++|..+++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999987443 23345567788888888 7777777665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=110.21 Aligned_cols=186 Identities=9% Similarity=-0.060 Sum_probs=123.4
Q ss_pred hHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV---TPN--EITFVGVLG 535 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~ 535 (798)
.|...|++++|.+.|++..+- + ..+|+.+...|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666665555543321 1 34667777777777777777777777654210 111 236777888
Q ss_pred HHHhc-CcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 003746 536 ACRHM-GLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DV-----ATWGAL 601 (798)
Q Consensus 536 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 601 (798)
.|... |++++|...|++.++-..-..+ ...+..+...|.+.|++++|.+.|++. ...| +. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999998763211111 356788899999999999999999887 2222 21 157778
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCChhHHHHHHHHH
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGF-----HVLLSNIHA--SKGRWDDVLEVRGMM 655 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 655 (798)
..++...|++++|+..+++++++.|+.... +..+...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888999999999999999999999986543 334556664 457788888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=124.63 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=141.6
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 535 (798)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788889999999999999999988764 3467899999999999999999999999988 46664 58899999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
++...|++++|.+.|+++++ +.|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999986 5675 788999999999999999999999987 5556 5788999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003746 613 MGERVGRKLVELQP 626 (798)
Q Consensus 613 ~A~~~~~~~~~~~p 626 (798)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=108.76 Aligned_cols=221 Identities=10% Similarity=0.090 Sum_probs=156.0
Q ss_pred hcccchhHHHHHHHHHHHc-------CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHH
Q 003746 437 THLVALDQGKWIHAYIRKN-------GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNAL 498 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 498 (798)
...|+++.|...++..++. ..+....++..+...|...|++++|...|++..+. ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777653 22335677888999999999999999998876521 24578889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCcC-Ccch
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKS------GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEH-----RLEP-NSKH 565 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 565 (798)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++++.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11233 3467788888999999999999999987631 1133 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHHcCChh------HHHHHHHHHHhcCCCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-P---------MSP-DVATWGALLGACKKHGDHE------MGERVGRKLVELQPDH 628 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~p~~ 628 (798)
+..+...|.+.|++++|.+.++++ . ..+ ....|..+.......+... .+...++......|+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998876 1 122 2334444444444433332 2222233222334556
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788999999999999999999998765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-10 Score=101.13 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=101.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 578 (798)
.+...|++++|++.+++... ..|+.. .+..+...|...|++++|.+.|+++++ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34445666666666666544 233322 455566777777777777777777765 345 36777778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 579 LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERV-GRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
+++|...|++. ...| +..+|..+...+...|+.++|.+. ++++++++|+++.++...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4445 577888999999999998776655 589999999999999988888888775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-07 Score=95.41 Aligned_cols=162 Identities=9% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCc--HHHH-h
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIR--P--DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN--SILG-T 465 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~ 465 (798)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...++...+....++ .... .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4555666777777777777777776553211 1 123344455555666666666666666554311111 1111 1
Q ss_pred ---HHHhhHHhcCCHHHHHHHHhhcCCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHH-HH
Q 003746 466 ---TLIDMYMKLGCVDNALEVFHGTEEKGV-------SSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTPNEI-TF 530 (798)
Q Consensus 466 ---~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~ 530 (798)
..+..+...|++++|...++.....+. ..+..+...+...|++++|...+++.... |..++.. .+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 233445667777777777766654321 13445556666666666666666655431 1111111 33
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444555555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.2e-09 Score=105.68 Aligned_cols=223 Identities=10% Similarity=-0.042 Sum_probs=136.5
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcccchhHHHHHH
Q 003746 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH----GIRPD-EATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
++++|...|+.. ...|...|++++|+..|++.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467776666553 66677778888888777766442 11111 233444444444444444444444
Q ss_pred HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 003746 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN-GLADKSLEMFSEMKKSGVT-PN- 526 (798)
Q Consensus 450 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~- 526 (798)
...++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 443321 1112222221 23577788888886 8999998888887763110 01
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 003746 527 ---EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK-----HYGCMVDLLGRAGMLKEAEELIESM-PMSPDVA- 596 (798)
Q Consensus 527 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 596 (798)
..++..+...+...|++++|..+|+++.+...-.+... .|..++.+|...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 23577888889999999999999999876321111111 4677888899999999999999987 4445322
Q ss_pred -----HHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 597 -----TWGALLGACK--KHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 597 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
.+..++.++. ..+++++|+..|+++.+++|........
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 3445566664 3467888888888888888866443333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-07 Score=94.40 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=105.1
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 480 ALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 480 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 23344456666677777777777777776554432233 3555666777777777777777777754
Q ss_pred hCCCcC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 003746 556 EHRLEP-----NSKHYGCMVDL--LGRAG--MLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL- 624 (798)
Q Consensus 556 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 624 (798)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..+++++...|++++|++.++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 23333334333 22223 777777777777 32344333334444667777777777777766665
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 625 ---------QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 625 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+|+++.++..++.+....|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777666666666676 7777777776644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-08 Score=98.61 Aligned_cols=201 Identities=12% Similarity=0.085 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHH------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (798)
..+|..+...|...|++++|+..|++.... +-.| ....++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~~~~~~ 88 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----------------------------------AVAATL 88 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----------------------------------HHHHHH
Confidence 345666667777777777777777666542 1111 122334
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS------GVTPN- 526 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~- 526 (798)
..+...|...|++++|.+.|++.... ...+|..+...|...|++++|+..|++..+. +-.|+
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555555443311 1345666777777777777777777776653 11333
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCcCC-cchHHHHHHHHHhc------CCHHHHHHHHHhCC-CC
Q 003746 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEPN-SKHYGCMVDLLGRA------GMLKEAEELIESMP-MS 592 (798)
Q Consensus 527 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~ 592 (798)
..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+... ..+.++...++... ..
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2367777888888899999999888886531 12232 33444444444332 33555555666553 22
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 593 P-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 593 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
| ...+|..+...|...|++++|...+++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 35578889999999999999999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-08 Score=94.03 Aligned_cols=180 Identities=10% Similarity=-0.018 Sum_probs=117.3
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHhhcCC--CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFHGTEE--KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----TFV 531 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 531 (798)
..+..+...+.+.|++++|...|+.+.. ++ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667778888888888887664 22 135677777888888888888888887763 34321 333
Q ss_pred HHHHHHHh------------------cCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 003746 532 GVLGACRH------------------MGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMS 592 (798)
Q Consensus 532 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 592 (798)
.+..++.. .|+.++|...|+++++. .|+ ...+.....+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33334432 35566666666666542 233 2222111110 0000000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123466778899999999999999999999986 46888999999999999999999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=99.90 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---C---cchHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---G---VSSWN 496 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~ 496 (798)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+. + ..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666677778889999999999999999874322 1567788999999999999999999987642 1 34677
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH
Q 003746 497 ALIIGFAM--------NGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567 (798)
Q Consensus 497 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 567 (798)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 99999999999999984 45532 11111 111111110 011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCcch-
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKH----------GDHEMGERVGRKLVELQPDHDGF- 631 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~- 631 (798)
.+...|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788888999999999998887 22232 45777788888765 88999999999999999998643
Q ss_pred --HHHHHHHHHhcCCh
Q 003746 632 --HVLLSNIHASKGRW 645 (798)
Q Consensus 632 --~~~l~~~~~~~g~~ 645 (798)
...+..++...|++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 33444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-08 Score=86.96 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.+..++..+...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3334444444444444444444443 1 1123455666666666666677777777776666666666666677777777
Q ss_pred CChhHHHHHHHHHHh
Q 003746 643 GRWDDVLEVRGMMVR 657 (798)
Q Consensus 643 g~~~~a~~~~~~m~~ 657 (798)
|++++|.+.++.+.+
T Consensus 117 ~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 117 GDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 777777777666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=113.63 Aligned_cols=167 Identities=12% Similarity=0.007 Sum_probs=121.0
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003746 472 MKLGCVDNALEVFHGTE-----------EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRH 539 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 539 (798)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 55677777777777665 234567777777788888888888888887773 444 3466777777788
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.|++++|.+.|+++++ +.| +...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 345 36677778888888888888 7777776 3334 56678888888888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
.++++++++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888877766555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-08 Score=84.73 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888888899999999999888753 234567777888888899999999999998763 123466788889999
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 574 GRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999887 22 3467888999999999999999999999999988863
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-08 Score=100.07 Aligned_cols=175 Identities=7% Similarity=-0.009 Sum_probs=136.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
.+.....+......+...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555554445556777788888999999999999998884 5654 4777788889999999999999998854
Q ss_pred hCCCcCCcchHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--cc
Q 003746 556 EHRLEPNSKHYGC-MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH--DG 630 (798)
Q Consensus 556 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~ 630 (798)
..|+...... ....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4565433322 233466778888888888776 3344 68899999999999999999999999999999988 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=90.55 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=91.0
Q ss_pred CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 558 RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 558 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45664 667788888999999999999999887 3445 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 635 LSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.1e-09 Score=93.74 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDH 611 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 611 (798)
..+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 445567899999999988743 4554 566778999999999999999999987 4455 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV-RGMMVRR 658 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 658 (798)
++|+..++++++++|+++..+..++.+|...|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987765 4776653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-07 Score=88.51 Aligned_cols=172 Identities=9% Similarity=-0.051 Sum_probs=133.0
Q ss_pred HHHHHhhcCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHH
Q 003746 480 ALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG----LVDEGHRHFNSMI 554 (798)
Q Consensus 480 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 554 (798)
|.+.|++..+ .+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 355677777777777888888888888887765 45566666666666 6 8899999998885
Q ss_pred HhCCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 003746 555 QEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESM-PMSPD---VATWGALLGACKK----HGDHEMGERVGRKLV 622 (798)
Q Consensus 555 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 622 (798)
+. -+...+..|..+|.. .+++++|.++|++. ...|+ ...+..|...|.. .++.++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 246677788888877 88999999999987 33343 7888999999988 789999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 003746 623 ELQPDHDGFHVLLSNIHASK-G-----RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 623 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 660 (798)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66777899999999764 3 89999999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-08 Score=91.92 Aligned_cols=155 Identities=7% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH-HHh
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL-LGR 575 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 575 (798)
+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++++.+ ..|+...+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHh
Confidence 33444445555555555554443 12322 2344444455555555555555554432 22222111111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH--DGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11222345555554 2334 57788888888899999999999999999988875 45788888999999999999888
Q ss_pred HHHHHh
Q 003746 652 RGMMVR 657 (798)
Q Consensus 652 ~~~m~~ 657 (798)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-06 Score=91.79 Aligned_cols=350 Identities=10% Similarity=-0.034 Sum_probs=165.6
Q ss_pred CCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCCCCc-hhHHHHHHHHhc----cCchHH
Q 003746 242 GNVAEACRLFKEMPK--KDLVSWSALISCYEQNEM-YEEALVLFMNMIDH-RVMVDE-VVVVSVLSACAN----LTVVKA 312 (798)
Q Consensus 242 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~a~~~----~~~~~~ 312 (798)
|+++.+..+|++... |++..|...+.-..+.+. .+....+|+..+.. |..|+. ..|...+.-+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888887654 677788877776666653 35566677766543 544433 344444443322 345667
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----C
Q 003746 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----E 388 (798)
Q Consensus 313 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 388 (798)
++.++..++......-..++......-.. .....+.++..+ ..+.+..|+.+++.+. .
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~-----------------~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD-----------------TLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHhh
Confidence 77777777763221111222222221111 111111111111 1112233333333221 1
Q ss_pred CCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH
Q 003746 389 KDVVSWSTMISGYAQHDQ-------FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461 (798)
Q Consensus 389 ~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 461 (798)
.+...|...+.--..++. .+.+..+|+++.... +-+...+...+.-+...|+++.|..+++..++. +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 233456555544322211 234556777766542 333455555555566677777777777777776 3333
Q ss_pred HHHhHHHhhHHhcCCHHHH-HHHHhhcC------------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003746 462 ILGTTLIDMYMKLGCVDNA-LEVFHGTE------------EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 528 (798)
..+.. |+...+.++. ..+.+... ......|-..+..+.+++..+.|..+|++. .. ..++..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 32221 2221111111 01111100 001124555555555556666666666666 21 112222
Q ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003746 529 TFVGVLGACR-HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607 (798)
Q Consensus 529 t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 607 (798)
.|......-. ..++.+.|..+|+..++.++- +...+...++...+.|+.+.|..+|+++. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3322111111 122466667777666664322 23334455666666666666666666662 234555555555555
Q ss_pred cCChhHHHHHHHHHH
Q 003746 608 HGDHEMGERVGRKLV 622 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~ 622 (798)
+|+.+.+..++++.+
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 565555555555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=89.71 Aligned_cols=101 Identities=7% Similarity=-0.005 Sum_probs=88.3
Q ss_pred CcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455 3666777888899999999999999887 3334 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.+|...|++++|.+.+++..+..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.74 E-value=5.4e-07 Score=90.01 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----GVSSWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
+...++..++.+ .++......+...|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 344455567888899999999999999887433 34577788899999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 520 KSGVTP-----NEITFVGVLGAC--RHMG--LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 520 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+ ..| +..+...+..++ ...| +..+|..+|+++.++ .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 467 356666666663 3334 899999999998654 344233344455889999999999998765
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 590 PM----------SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 590 ~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.. .| |+.+.-.++......|+ .|.+.++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 56677566666666776 88999999999999997543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=91.22 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=93.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 574 (798)
.+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+++++ +.|+ ...+..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3788888999999999999998884 554 45778888888899999999999999876 4564 777888888887
Q ss_pred hcCC--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 575 RAGM--LKEAEELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 575 ~~g~--~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..|+ .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 345556666553 333 3345556667777889999999999999999974
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=91.60 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=116.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVG----------------VLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++.++ +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---KA 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HC
Confidence 34456677777777777777776 345433 4444 77889999999999999999987 45
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 561 P-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD--HEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 561 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
| +...+..+..+|...|++++|.+.|++. ...| +..+|..+...+...|+ .+.+...++++....|.. ..+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHH
Confidence 6 4788999999999999999999999988 4445 57889999988876654 445566666665443332 245667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.++...|++++|...+++..+..
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888999999999999987643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=107.33 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 549 (798)
.|++++|.+.|++..+. +...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987753 4678999999999999999999999999984 555 55788888999999999999999
Q ss_pred HHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHHh
Q 003746 550 FNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH---GDHEMGERVGRKLVE 623 (798)
Q Consensus 550 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 623 (798)
+++.++. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999873 45 4788999999999999999999999987 3344 678899999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 003746 624 LQPDHDGFHVLLS 636 (798)
Q Consensus 624 ~~p~~~~~~~~l~ 636 (798)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-08 Score=84.14 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+......+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 445555566666666666666666654 234 3556666666666666666666666655 2233 456667777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...|++++|++.++++++++|+++.++..|++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777777777777666655554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-08 Score=112.05 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=133.6
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHH
Q 003746 503 AMNGLADKSLEMFSEMK--------KSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~--------~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 572 (798)
...|++++|++.|++.. + ..|+ ...+..+..++...|++++|...|+++++ ..| +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHH
Confidence 77899999999999998 4 3454 45788888999999999999999999987 356 47889999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 573 LGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
|.+.|++++|.+.|++. ...| +...|..+..++...|++++ +..|+++++++|+++..+..++.+|...|++++|.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999987 4445 57789999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 003746 651 VRGMMVRRG 659 (798)
Q Consensus 651 ~~~~m~~~~ 659 (798)
.+++..+..
T Consensus 556 ~~~~al~l~ 564 (681)
T 2pzi_A 556 TLDEVPPTS 564 (681)
T ss_dssp HHHTSCTTS
T ss_pred HHHhhcccC
Confidence 999776543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.8e-07 Score=93.58 Aligned_cols=220 Identities=11% Similarity=0.027 Sum_probs=155.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH-LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
..|++++|.+++++..+.. +.. +.. .++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999998876531 111 111 46677776666554 45677788888888
Q ss_pred HHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCcHHHHH
Q 003746 482 EVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSG---VTPN--EITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 482 ~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 547 (798)
..|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888765431 1 3478888999999999999999999876521 1222 2467778888888 9999999
Q ss_pred HHHHHHHHhCCCc---C-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChhHHH
Q 003746 548 RHFNSMIQEHRLE---P-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM---SPD----VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 548 ~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~ 615 (798)
.+|++.++-+.-. + ....+..+...|.+.|++++|.+.|++. .. .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987632111 1 1467888999999999999999999887 11 122 236677777888889999999
Q ss_pred HHHHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 003746 616 RVGRKLVELQPDHDGF-----HVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 651 (798)
..+++++ +.|+.... ...++.+| ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99976543 33445555 56776666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-07 Score=92.09 Aligned_cols=164 Identities=9% Similarity=-0.076 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 564 (798)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677788899999999999888775322111 12334455667888999999999988753211112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------Cc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM----PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPD------HD 629 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 629 (798)
.|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|+..+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998876 11222 258899999999999999999999999876432 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDV-LEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 657 (798)
.++..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-08 Score=83.56 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=91.3
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.|+ ...+...+..|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5665 567888999999999999999999987 4444 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998774
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=82.84 Aligned_cols=100 Identities=12% Similarity=0.010 Sum_probs=85.7
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4443 555666778888899999999988887 3334 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-06 Score=87.15 Aligned_cols=161 Identities=9% Similarity=-0.087 Sum_probs=120.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGV-TPNEI----TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYG 567 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 567 (798)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+++.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877421 22221 2234556667778999999999998763222223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchH
Q 003746 568 CMVDLLGRAGMLKEAEELIESMP-------MS-PD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFH 632 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 632 (798)
.+...|...|++++|.+.++++- .. +. ..++..+...|...|++++|+..+++++++.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 11 22 3478899999999999999999999999865433 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 003746 633 VLLSNIHASKGR-WDDVLEVRGMMVR 657 (798)
Q Consensus 633 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 657 (798)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=86.53 Aligned_cols=125 Identities=8% Similarity=-0.042 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKK 607 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 607 (798)
+..+...+...|++++|...|+++ +.|+...+..+...|.+.|++++|.+.+++. ... .+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445556667777777776654 3456666777777777777777777777665 222 356778888888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 608 HGDHEMGERVGRKLVELQPDHD----------------GFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888888776 788888999999999999999988887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=102.94 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=64.0
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFS 516 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 516 (798)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555554432 123444555555555555555555555544332 23445555555555555555555555
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 003746 517 EMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA---GMLKEAEELIESM 589 (798)
Q Consensus 517 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 589 (798)
+..+. .|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...|... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55542 232 234455555555555555555555555442 23 244455555555555 5555555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=86.84 Aligned_cols=184 Identities=11% Similarity=-0.023 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--C-cc---hHHH
Q 003746 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK--G-VS---SWNA 497 (798)
Q Consensus 426 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~ 497 (798)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+. + .. +|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677889999999999999999874332 2456777899999999999999999987642 2 21 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 498 LIIGFAM------------------NGLADKSLEMFSEMKKSGVTPNEIT-FVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 498 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
+..++.. .|+.++|+..|+++.+. .|+... ..... +.+ .+...+ .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~-~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRL-A--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHH-H---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHH-H---
Confidence 5555554 57899999999999984 566532 11111 100 011111 0
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 559 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|++.++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11235678899999999999999987 22343 257888999999999999999999999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-07 Score=91.60 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=112.3
Q ss_pred CCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003746 525 PNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGAL 601 (798)
Q Consensus 525 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 601 (798)
|+. ..+..+...+...|++++|...|+++++ ..| +...+..+..+|.+.|++++|.+.++++ ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 4677778888999999999999999987 456 4778889999999999999999999998 445765544333
Q ss_pred H-HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 602 L-GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 602 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
. ..+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.+..+.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 346678889999999999999999999999999999999999999999999998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=82.85 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=117.5
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA-CRHM 540 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~ 540 (798)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3456678889999999999998774 35678899999999999999999999988764 4443322221111 1222
Q ss_pred CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChhHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD---VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~ 615 (798)
+...+|...+++.++ ..|+ ...+..+...|...|++++|.+.++++ ...|+ ...|..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233357888888876 4564 788889999999999999999999987 44554 568999999999999999999
Q ss_pred HHHHHHHh
Q 003746 616 RVGRKLVE 623 (798)
Q Consensus 616 ~~~~~~~~ 623 (798)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=83.92 Aligned_cols=144 Identities=6% Similarity=-0.039 Sum_probs=81.1
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 544 (798)
..+...|.+.|++++|.+.|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3344455555666666666655554455555555555555555555555555555431 112334445555555555555
Q ss_pred HHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
+|.+.|+++.+. .|+..... +...| +...| ...+|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555432 12100000 00000 01223 246788899999999999999999999999
Q ss_pred cCCCC
Q 003746 624 LQPDH 628 (798)
Q Consensus 624 ~~p~~ 628 (798)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99986
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-07 Score=82.85 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=84.4
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--h
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA-CKKHGDH--E 612 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 612 (798)
..|++++|...+++.++. .| +...+..+...|...|++++|.+.|++. ...| +...|..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345666666666666553 23 3566667777777777777777777665 2223 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+|+..++++++..|+++..+..++.+|...|++++|.+.++.+.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888888888888876543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.9e-06 Score=81.75 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=101.9
Q ss_pred CHHHHHHHHhhcCC---CCcchHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH-
Q 003746 476 CVDNALEVFHGTEE---KGVSSWNALIIGF----AMN---GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD- 544 (798)
Q Consensus 476 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 544 (798)
+++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|...|..-.....+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 45555555554442 2233444443333 333 55666666666666532 223345555555555555555
Q ss_pred -HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH-
Q 003746 545 -EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM------LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEM- 613 (798)
Q Consensus 545 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~- 613 (798)
+++++++++++. .| |...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+...
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666552 23 34445444445555554 66677766655 2233 67777777777766666433
Q ss_pred HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 614 GERVGRKLVELQ---PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 614 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....++++++++ |.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 445666666655 66666777777777777777777777777664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-07 Score=92.99 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=132.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 535 (798)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344566677778888888888888887653 35667888888899999999999999988874 554 457777888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
++...|++++|...|+++.+. .|+ ...+...+....+.++...... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 899999999999999888653 342 2222223333322222222222 222333344444444433 2 36899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASK-GRWDDVLEVRGMMVRR 658 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 658 (798)
++.++++++++|++......+..++... +++++|.++|..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999877777777777776 7899999999888653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=75.03 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGAC 605 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 605 (798)
..+..+...+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455666666777777777777777776531 224566677777777888888888877776 22 34677888899999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888776544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-07 Score=94.02 Aligned_cols=197 Identities=7% Similarity=-0.047 Sum_probs=150.1
Q ss_pred cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
..|++++|.++++...+.... . .+...|+++.|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899988888764221 0 12225889999988765 36778899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 518 MKKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEH---RLEP-NSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 518 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
..+. |-.+. ..+|..+...|...|++++|...|++.++-+ |-.+ ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 2378888889999999999999999986532 1111 14678889999988 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHH
Q 003746 589 M-PM---SPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHD------GFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 589 ~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
. .+ ..+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 45788999999999999999999999999876553 2566778888899999999999998
Q ss_pred HH
Q 003746 655 MV 656 (798)
Q Consensus 655 m~ 656 (798)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=79.61 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++.++. .| +...+..+...|...|++++|.+.+++. ...| +..+|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555556666777777777777777653 33 4666777777888888888888887776 2233 577888999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHH--HHHHHhcCChhHHHHHHHHHHh
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLL--SNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...|++++|...+++++++.|++...+..+ +..+...|++++|.+.+....+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877544 4448888999999999887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=82.53 Aligned_cols=104 Identities=8% Similarity=0.019 Sum_probs=82.1
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 523 VTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 523 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
+.|+.. .+..+...+.+.|++++|...|+++++ +.| +...|..+..+|.+.|++++|.+.|+++ .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 455544 566667777888888888888888876 455 4777888888888888888888888877 3344 56788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8.6e-07 Score=92.04 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 367788888888999999999888887 3334 68889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 003746 641 SKGRWDDV-LEVRGMMV 656 (798)
Q Consensus 641 ~~g~~~~a-~~~~~~m~ 656 (798)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=75.41 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 604 (798)
..+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34555666667777777777777777653 23 4566777777777888888888877766 2233 57788888899
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
+...|++++|...+++++++.|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988899999888888775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=76.39 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|+++++ ..| +...+..+...|...|++++|.+.+++. ... .+...|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455555566666666666666666643 233 3555666666666777777777766665 222 3567888888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
...|++++|++.+++++++.|++...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 899999999999999999999888888888888876653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-05 Score=75.58 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccc--chhHHHHHHHHHHHcCCCCcHHHHhHHHhhH----Hhc---
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEAT-LVSVISACTHLV--ALDQGKWIHAYIRKNGLKINSILGTTLIDMY----MKL--- 474 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 474 (798)
...++|++++.++... .|+..| ++.--.++...+ .++++...++.++....+ +..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3345666666666553 343332 333334444455 666666666666655432 333333332223 333
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc------H
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLAD--KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL------V 543 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 543 (798)
+++++++++++.+.+ ++..+|+--...+.+.|.++ ++++.++++.+... -|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 678889988888775 45668888888888889888 99999999998643 255567666666666666 8
Q ss_pred HHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChhHHHH
Q 003746 544 DEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKE-AEELIESM-PM----SPDVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
+++++++++++. ..| |...|+.+..++.+.|+..+ +.++.++. .. ..+...+..++..+.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999987 355 58888888899999888554 55677765 22 2478899999999999999999999
Q ss_pred HHHHHHh-cCCCCcchHHHHH
Q 003746 617 VGRKLVE-LQPDHDGFHVLLS 636 (798)
Q Consensus 617 ~~~~~~~-~~p~~~~~~~~l~ 636 (798)
+++.+.+ .+|....++...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 9999996 8998877776554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-05 Score=80.30 Aligned_cols=158 Identities=9% Similarity=-0.094 Sum_probs=121.6
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCc--------c-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGV--------S-SWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNE----ITFVG 532 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 532 (798)
.+..+.+.|++++|...++...+... . .+..+...+...|++++|+..|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988664321 1 2334667777788999999999999884322 232 26888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC----CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEH----RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD-VATWG 599 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 599 (798)
+..+|...|++++|..+|+++++.. +..+. ...|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999987522 22222 457889999999999999999998876 11222 67899
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHhc
Q 003746 600 ALLGACKKHGD-HEMGERVGRKLVEL 624 (798)
Q Consensus 600 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 624 (798)
.+..++...|+ +++|.+.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999864
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=73.23 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=85.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSN 637 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 637 (798)
+...+..+...+.+.|++++|...+++. ... .+..+|..+...+...|++++|+..++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3567777888888999999999988876 223 36778899999999999999999999999999999 9899999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCC
Q 003746 638 IHASK-GRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 638 ~~~~~-g~~~~a~~~~~~m~~~~~ 660 (798)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=94.41 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=91.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
.+...|++++|.+.|+++++. .| +...|..+...|.+.|++++|.+.+++. ...| +..+|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445677888888888877663 45 3677788888888888888888888776 3444 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNI--HASKGRWDDVLEVRGM 654 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 654 (798)
+|++.+++++++.|++...+..++.+ +...|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8888999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=75.01 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44566677778888888888888776 3334 678888899999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 003746 642 KGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 642 ~g~~~~a~~~~~~m~~~ 658 (798)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=9.2e-07 Score=76.22 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=84.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999887 3345 688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 003746 642 KGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 642 ~g~~~~a~~~~~~m~~~~ 659 (798)
.|++++|.+.+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-06 Score=83.26 Aligned_cols=162 Identities=8% Similarity=-0.086 Sum_probs=120.5
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHhhcCCCC---------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 003746 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKG---------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV---TPN--EI 528 (798)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 528 (798)
.+...+..+...|++++|.+.++...+.. ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888999999998887544321 12344566667888999999999999876321 122 33
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-P------MSP-DV 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~ 595 (798)
++..+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732212232 258889999999999999999999876 1 111 16
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 003746 596 ATWGALLGACKKHGDHEMG-ERVGRKLVEL 624 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 624 (798)
.+|..+...|...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6889999999999999999 7778888753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-06 Score=78.97 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----H
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P---MSP-D----V 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 595 (798)
.+..+...+...|++++|...+++.++. .+..| ....+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444445555555555555555554431 11122 2345556666666666666666666554 1 011 2 3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQP--DHD----GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++..+...+...|++++|...+++++++.+ .++ ..+..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3566777777788888888888888776422 121 2346788888888888888888877654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-05 Score=76.25 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----chhHHHHHHHHHHHcCCCCcHHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV----ALDQGKWIHAYIRKNGLKINSILGT 465 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (798)
++.++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666666666666667777777776666554 33444444444444 4 5666666666665544 344555
Q ss_pred HHHhhHHh----cCCHHHHHHHHhhcCCCC-----cchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003746 466 TLIDMYMK----LGCVDNALEVFHGTEEKG-----VSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVG 532 (798)
Q Consensus 466 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 532 (798)
.|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55566655 667777777777666544 3566666666666 66677777777776664 223334455
Q ss_pred HHHHHHhc-C-----cHHHHHHHHHHHHH
Q 003746 533 VLGACRHM-G-----LVDEGHRHFNSMIQ 555 (798)
Q Consensus 533 ll~a~~~~-g-----~~~~a~~~~~~~~~ 555 (798)
+...|... | +.++|..+|++..+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55555432 2 66777777766654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-05 Score=83.26 Aligned_cols=336 Identities=7% Similarity=-0.080 Sum_probs=176.9
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCC-HHHH
Q 003746 271 QNE-MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE-ITTA 348 (798)
Q Consensus 271 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 348 (798)
+.| +++.|..+|+.+... -|. ++.+.+..+++..+.. .|++.+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366777777776551 122 6677777777777663 3566677776666665553 2334
Q ss_pred HHHHHh-----c-CCCChhhHHHHHHHHH----hcCCHHHHHHHHHhcCCC---CH-HHHHHHHHHHHhCCChHHHHHHH
Q 003746 349 EKLFDA-----G-HNLDLISWNSMISGYL----KCGSVEKARALFDAMIEK---DV-VSWSTMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 349 ~~~~~~-----~-~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~---~~-~~~~~li~~~~~~g~~~~A~~l~ 414 (798)
..+|+. + ...+...|...+.-+. ..++++.++++|++...- +. ..|...... .+......+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~- 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKI- 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHH-
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHH-
Confidence 445543 1 1234455666555433 234566666666665321 11 112211111 000111111111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc--CC-----HHHHHHHHhhc
Q 003746 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL--GC-----VDNALEVFHGT 487 (798)
Q Consensus 415 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~ 487 (798)
+... .+.+..|+.++..+.+.--..+...|...++.-... |- .+.+..+|+++
T Consensus 146 ------------------~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 146 ------------------VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp ------------------HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 122333444444333210001233444444432211 10 23455666665
Q ss_pred CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC------
Q 003746 488 EE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR------ 558 (798)
Q Consensus 488 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 558 (798)
.. .....|-..+.-+.+.|+.++|..+|++.... |+...+.. +|......++ .++.+.+.+-
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC------
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccch
Confidence 53 24567888888888899999999999999886 55433222 1221111111 1333322210
Q ss_pred --CcC---CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCcch
Q 003746 559 --LEP---NSKHYGCMVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKK-HGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 559 --~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
..+ ....|...++.+.+.|.++.|.++|+++..+ .+..+|-..+..-.. .++.+.|..+++.+++..|+++..
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 001 1345667777777888899999999988322 234445332222222 336999999999999988988877
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 003746 632 HVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+...++...+.|+.+.|+.+++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777788889999999999876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=78.31 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=86.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 523 VTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 523 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
+.|+.. .+..+...+...|++++|...|+++++ ..| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 345443 566667778888888888888888876 345 5777788888888999999999888887 3334 56788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
..+..++...|++++|+..+++++++.|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 8999999999999999999999999999987764433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-06 Score=76.13 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655 2223 56666677777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003746 641 SKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~ 658 (798)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=75.61 Aligned_cols=94 Identities=6% Similarity=-0.017 Sum_probs=79.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc-------hHHH
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-------FHVL 634 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 634 (798)
..+..++..|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|++.+++++++.|++.. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566788888889999998888876 3445 5788999999999999999999999999999887654 5677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003746 635 LSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999988765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.7e-06 Score=74.06 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777888888888888887776 2233 5778888999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...|++++|.+.++...+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999998887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-06 Score=77.19 Aligned_cols=129 Identities=9% Similarity=0.107 Sum_probs=100.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHH-HHhcCCH-
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL-LGRAGML- 579 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 579 (798)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++++. .| +...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35677888888888887742 234567888888888999999999999998763 44 46777788888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 580 -KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 580 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999887 3334 578899999999999999999999999999999987655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-06 Score=79.73 Aligned_cols=152 Identities=14% Similarity=0.032 Sum_probs=102.6
Q ss_pred hcCCHHHHHH---HHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 473 KLGCVDNALE---VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 473 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++..+ .+..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 54443333355677777778888888888888877665 222222 235666777888888888
Q ss_pred HHHHHHHHHHHhCCCcC-----CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 003746 545 EGHRHFNSMIQEHRLEP-----NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSPD----VATWGALLGACKKHGDH 611 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 611 (798)
+|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888888765421122 1345777888888899999888888765 11122 23467788888999999
Q ss_pred hHHHHHHHHHHhc
Q 003746 612 EMGERVGRKLVEL 624 (798)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (798)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988865
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=68.33 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555666666666666666542 23 3455556666666666666666666655 2223 466677777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
...|++++|...++++++..|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777778888888887777777777666665544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=85.45 Aligned_cols=135 Identities=11% Similarity=-0.029 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLL 573 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 573 (798)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677777888888877777653 355544444455677888888888888755321 1 111 23566778888
Q ss_pred HhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 574 GRAGMLKEAEELIESM---PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.+.|++++|++.|++. +..|. ...+..+..++.+.|+.++|...|++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888888877 22143 346777888889999999999999999999998 6555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-06 Score=70.53 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677888999999999999999987 3334 78889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003746 641 SKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~~ 659 (798)
..|++++|.+.++...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=74.79 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=85.8
Q ss_pred CCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 003746 524 TPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWG 599 (798)
Q Consensus 524 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 599 (798)
.|+.. .+..+...+...|++++|...|+++++ ..| +...|..+..+|.+.|++++|...|++. ...| +...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 44333 455566677788888888888888876 345 4677778888888888888888888877 3334 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
.+..++...|++++|+..+++++++.|+++........+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 899999999999999999999999999988766554433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=73.24 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD-V---ATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIH 639 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 639 (798)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|+..++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776665 11222 2 466677777777888888888888888888877 56677778888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|.+.++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888777653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.3e-06 Score=78.12 Aligned_cols=168 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred hHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
.....|.++.|.+.++...+. ....|..+...+...|++++|+..|++..+. .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 334455566666555433221 2345666666777777777777777776663 2221100000 00000
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
. .. .....+..+..+|.+.|++++|...+++. ...| +..+|..+..++...|++++|+..+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245667778888888888888888776 3333 6778999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 003746 625 QPDHDGFHVLLSNIHASKGRWDDVL-EVRGMMVRR 658 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 658 (798)
.|+++..+..++.++...|+.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888888777 445555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=70.68 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788899999999999999999987 22 3468889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003746 641 SKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~~ 659 (798)
..|++++|.+.++.+.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=71.57 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
.+..+...+...|++++|...|++.++ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 444444555555555555555555543 2343 345555666666666666666666554 2223 566777788
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
.++...|++++|...+++++++.|++...+..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888877666665553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.6e-06 Score=80.58 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=136.7
Q ss_pred hcCCHHHHHHHHhhcCCCC---cchHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 003746 473 KLGCVDNALEVFHGTEEKG---VSSWNAL-------IIGFAMNGLADKSLEMFSEMKKSGVTPNEI-------------- 528 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~---~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 528 (798)
..++...|.+.|.+....| ...|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998877543 4578877 4566666666666666555443 333321
Q ss_pred --------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 003746 529 --------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV----A 596 (798)
Q Consensus 529 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 596 (798)
....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 233455678889999999999988753 3454326667777899999999999999977433433 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQ--PD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++..+..++...|++++|+..++++..-. |. .+...+.++.++.+.|+.++|..+++++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78889999999999999999999998543 55 44577889999999999999999999998743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-05 Score=73.96 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 604 (798)
..+..+...+...|++++|...|++.++. .| +...|..+...|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35666667777788888888888887663 44 4677778888888888888888888876 3344 58889999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...|++++|+..+++++++.|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-06 Score=72.61 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667888899999999999999999987 56676 678999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003746 637 NIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.8e-06 Score=70.48 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++.++. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555566667777777777777777653 34 4667777778888888888888887776 3334 577888899999
Q ss_pred HHcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSNIH 639 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 639 (798)
...|++++|+..+++++++. |++......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999998 88777766665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-06 Score=72.17 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=88.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3667888999999999999999999987 4445 6889999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-06 Score=74.25 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVEL-------QPDHDGFH----VLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|++.|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999999999999 99999999 99999999999999999999988763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=73.30 Aligned_cols=65 Identities=9% Similarity=0.159 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..+|..+..+|...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34678888999999999999999999999999999999999999999999999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-06 Score=70.73 Aligned_cols=98 Identities=6% Similarity=-0.011 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+...|++++|.+.+++. ... .+..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567778889999999999999999987 333 36888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...|++++|.+.++...+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=70.01 Aligned_cols=127 Identities=11% Similarity=-0.016 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHH
Q 003746 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVD 571 (798)
Q Consensus 493 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 571 (798)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777888888888888888877742 224556777778888888888888888888763 34 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGA--LLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888999888888876 2233 4455533 33346777888888888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=68.32 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLS 636 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 636 (798)
+..+...+...|++++|...+++. .. +.+..+|..+...+...|++++|...+++++++.|++ +..+..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344445555555555555555544 11 2245555556666666666666666666666655544 45555666
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003746 637 NIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+|...|++++|.+.++...+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=81.97 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE----------------ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
...|..+...|.+.|++++|+..|++..+. .|+. ..+..+..++.+.|++++|...++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346777777788888888888888888774 3443 6788888889999999999999999876
Q ss_pred hCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 003746 556 EHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG-ERVGRKLVE 623 (798)
Q Consensus 556 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 623 (798)
+.| +...|..+..+|...|++++|.+.|+++ ...| +..+|..+..++...|+.++| ...++++++
T Consensus 225 ---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 ---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 4778888999999999999999999887 3444 577888899999999999888 456777764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-05 Score=84.56 Aligned_cols=116 Identities=9% Similarity=0.085 Sum_probs=56.1
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGL 542 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 542 (798)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 33445555666666666654432 23445555555555555566665555555553 333 2345555555555555
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL--LGRAGMLKEAEELIE 587 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 587 (798)
+++|.+.|+++++. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555555442 232 2333333333 444555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=68.91 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
+...+..+...+...|++++|...|++.++. .| +...+..+...|...|++++|...+++. ...| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556777777777788888888888877653 34 3667777888888888888888888776 3334 577888999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.++...|++++|+..+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999998887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-06 Score=72.90 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 576 AGMLKEAEELIESM-PM---SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
.|++++|+..|++. .. .| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666555 32 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 003746 651 VRGMMVR 657 (798)
Q Consensus 651 ~~~~m~~ 657 (798)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=69.27 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACK 606 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 606 (798)
+..+...+.+.|++++|...|+++++ ..| +...+..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34445566677777777777777765 345 4666777777788888888888887776 3344 5678888888888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCc
Q 003746 607 KHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..|++++|+..++++++++|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88999999999999999888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=85.28 Aligned_cols=143 Identities=9% Similarity=-0.034 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -++..+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666777777777777777776652 2222100 0 000000 000 01456778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999888887 3334 68889999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHH
Q 003746 650 EV-RGMMV 656 (798)
Q Consensus 650 ~~-~~~m~ 656 (798)
+- ++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 53 45554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-05 Score=65.80 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-c---chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-S---KHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLG 603 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 603 (798)
+...+...|++++|...|+++++. .|+ . ..+..+...|.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555667777777777776653 233 2 35666777777778888887777766 22232 566788888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
++...|++++|...++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999999999998876554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=70.28 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCcc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQP------DHDG 630 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 630 (798)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555666666666666665554 00111 34566777777888888888888888776522 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567788888889999999888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00036 Score=71.09 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcCCC---CcchHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH-------
Q 003746 477 VDNALEVFHGTEEK---GVSSWNALIIGFAMN-G-LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD------- 544 (798)
Q Consensus 477 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~------- 544 (798)
++++++.++.+... +..+|+.-...+... + ++++++++++++.+.. .-|...|..-.....+.|..+
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 55555555554432 234555555444444 4 5566666666666532 113334444444444434333
Q ss_pred -HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh--
Q 003746 545 -EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM-------LKEAEELIESM-PMSP-DVATWGALLGACKKHGDH-- 611 (798)
Q Consensus 545 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-- 611 (798)
+++++++++++. .| |...|+....++.+.|+ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 184 GSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 677777777653 33 45566666666666665 67777777665 3334 677888777777766654
Q ss_pred ------------------hHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 612 ------------------EMGERVGRKLVELQ------PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 612 ------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
........++.... +..+.....|+++|...|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222222 34555677899999999999999999999864
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0019 Score=65.76 Aligned_cols=231 Identities=14% Similarity=0.073 Sum_probs=154.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccc-chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc-C
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-G 475 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 475 (798)
....+.+..++|++++.++... .|+.. .++.--..+...+ .++++..+++.+++... .+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 3344455566777777777764 34433 3444444444555 47777777777776543 3555666655555555 6
Q ss_pred -CHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-
Q 003746 476 -CVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLAD--------KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL- 542 (798)
Q Consensus 476 -~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 542 (798)
++++++++++.+.+.| ..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7788999998888654 457777666666666666 8999999999853 2355677777777777665
Q ss_pred ------HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC---
Q 003746 543 ------VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML--------------------KEAEELIESM-PM--- 591 (798)
Q Consensus 543 ------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~--- 591 (798)
++++++++++++. ..| |...|+-+-.++.+.|+. .+..++..++ ..
T Consensus 218 ~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 7889999988876 456 577777777777777653 3444444444 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hcCCCCcchHHHHH
Q 003746 592 ----SPDVATWGALLGACKKHGDHEMGERVGRKLV-ELQPDHDGFHVLLS 636 (798)
Q Consensus 592 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 636 (798)
.+....+..|+..|...|+.++|.++++.+. +.+|-...++....
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2577889999999999999999999999987 67887666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=83.29 Aligned_cols=164 Identities=10% Similarity=-0.084 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcCC-cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEI----TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEPN-SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~ 564 (798)
++..++..|...|++++|.+.+.++...- ..++.. ....+-..+...|+.+++..+++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36677888888888888888888765421 112221 1222223344568889999888877542 122222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CC----c
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-----P--MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP---DH----D 629 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~ 629 (798)
.+..++..|...|++++|..++++. . .++ ...++..++..|...|++++|...+++++...| ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778899999999999999998875 1 122 245788889999999999999999999886532 22 2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++..++.++...|++++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566778888899999999988876643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00079 Score=68.24 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=60.0
Q ss_pred HhCCCh-HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccc----------hhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 402 AQHDQF-SETLSLFMEMQHHGIRPDEAT-LVSVISACTHLVA----------LDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 402 ~~~g~~-~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
.+.|.+ ++|++++..+... .|+..| ++.=-..+...+. ++++..+++.++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344544 4778888877763 455443 2221111111111 345555555555543 224445544444
Q ss_pred hHHhcC--CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC-hHHHHHHHHHHHHC
Q 003746 470 MYMKLG--CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL-ADKSLEMFSEMKKS 521 (798)
Q Consensus 470 ~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~ 521 (798)
.+.+.| .++++..+++.+.+. |..+|+--...+...|. ++++++.++++++.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 445555 356666666655532 34456555555555565 36666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=71.18 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-P-------MSPD-VATW----GALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3775 5688 999999999999999999999999999998765
Q ss_pred HHHH
Q 003746 632 HVLL 635 (798)
Q Consensus 632 ~~~l 635 (798)
.--+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-05 Score=64.22 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVATWGALLG 603 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 603 (798)
.+..+...+...|++++|...|+++++. .| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444555566666666666666666552 23 3556666777777777777777777765 2233 4778888888
Q ss_pred HHHHc-CChhHHHHHHHHHHhcCCCCc
Q 003746 604 ACKKH-GDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 604 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 629 (798)
.+... |++++|++.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999998888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.6e-05 Score=66.71 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 571 (798)
+|..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.+++.++ +.|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHH--
Confidence 3445555566666666666666665552 333 23455555556666666666666655543 1221 1111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
..+|..+..++...|++++|++.++++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666666677777777777777766664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=81.38 Aligned_cols=137 Identities=8% Similarity=0.010 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHH
Q 003746 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVD 571 (798)
Q Consensus 493 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 571 (798)
..|..+...+.+.|++++|++.|++.++. .|+. ..... .+.. ....| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~---~~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADG---AKLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHH---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHH---HHHHHHHHHHHHHHHH
Confidence 34666677777777777777777766641 1100 00000 1111 01233 3677888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|+..+++++++.|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5555 57889999999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 003746 650 EV 651 (798)
Q Consensus 650 ~~ 651 (798)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=5.7e-05 Score=65.27 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM----SPD----VATWGA 600 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 600 (798)
+..+...+...|++++|..+|+++++. .+.+...+..+...|...|++++|...++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555442 1123444555555556666666666655554 11 122 567778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+...|++++|...++++++..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 88888888888888888888888888 455555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-05 Score=77.91 Aligned_cols=103 Identities=8% Similarity=-0.124 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
+...+..+...+...|++++|...|+++++. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456677777888888888888888888763 45 4677778888888888888888888776 4445 567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.++...|++++|+..+++++++.|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 88888888888888888888888776433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=71.84 Aligned_cols=76 Identities=16% Similarity=0.012 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD-GFHVLLSNI 638 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 638 (798)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467788888899999999999988877 3344 678899999999999999999999999999999987 445455433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-05 Score=70.35 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 688889999999999999999999999999999999999999999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=68.52 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=65.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.|++++|+..|+++++...-.| +...+..+...|.+.|++++|.+.|++. ...| +..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677777777654100024 3566777777788888888888887776 3334 57788888889999999999999
Q ss_pred HHHHHHhcCCCCcchHH
Q 003746 617 VGRKLVELQPDHDGFHV 633 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~ 633 (798)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-05 Score=69.55 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cch
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNE----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKH 565 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 565 (798)
+..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555555555555555554432100 111 24555556666677777777777665542111111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-------PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 666777777777777777777665 1111 134677788888888999999999988887543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-05 Score=81.60 Aligned_cols=147 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 466677777888888888888888776 3455432 223344444432221 13667788888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChhHHHH
Q 003746 574 GRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH-ASKGRWDDVLE 650 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~ 650 (798)
.+.|++++|...+++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..|..+. ...+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 3334 6778888888899999999999999999999998888888887774 44567778888
Q ss_pred HHHHHHhCCC
Q 003746 651 VRGMMVRRGV 660 (798)
Q Consensus 651 ~~~~m~~~~~ 660 (798)
.++.|.....
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8888765443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00023 Score=78.97 Aligned_cols=167 Identities=8% Similarity=-0.014 Sum_probs=135.1
Q ss_pred CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003746 476 CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL----------ADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMG 541 (798)
Q Consensus 476 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 541 (798)
..++|.+.++.+... +..+|+.--..+...|+ ++++++.++++.+. .|+ ...|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 346777777776643 34577777777777777 89999999999985 444 457888888888888
Q ss_pred --cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 003746 542 --LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG-MLKEAEELIESM-PMSP-DVATWGALLGACKKH------- 608 (798)
Q Consensus 542 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 608 (798)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++.+.++++ ...| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999873 45 5777888888888889 899999999988 4455 788999888887763
Q ss_pred -------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 609 -------GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 609 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
+.++++++.++++++++|++...|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6e-05 Score=81.54 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=91.7
Q ss_pred HHhcCcHHHHHHHHHHHHHhCC--CcC---C-cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHR--LEP---N-SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGA 600 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 600 (798)
+...|++++|..++++.++... +-| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777777766654311 112 2 456777888888888888888877765 33454 457899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCcchH---HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVE-----LQPDHDGFH---VLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|...|...|++++|+.+++++++ +.|+++.+- ..|..++...|++++|..++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 578876554 467788889999999999999998643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=82.62 Aligned_cols=114 Identities=6% Similarity=-0.071 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
.+..+...+.+.|++++|...|+++++. .|+.. .+...|+.+++...+. ...|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667778889999999999988763 34322 1334455555554432 13788899999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999887644
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0018 Score=65.66 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=150.5
Q ss_pred cccch-hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC----------HHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 003746 438 HLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC----------VDNALEVFHGTEE---KGVSSWNALIIGFA 503 (798)
Q Consensus 438 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 503 (798)
+.|.+ ++|..+.+.++..+.. +..+|+.--..+...|. ++++..+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33444 3677888887775432 33444443333333332 6788888887764 45678888888888
Q ss_pred HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---
Q 003746 504 MNGL--ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL-VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA--- 576 (798)
Q Consensus 504 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 576 (798)
..|+ +++++++++++.+.. .-|...|+.-...+.+.|. +++++++++++++. .| |...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence 8884 899999999999853 2355677777777777887 69999999999874 45 566677666666554
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHhcCCCCcchH
Q 003746 577 -----------GMLKEAEELIESM-PMSP-DVATWGALLGACKKH-----------GDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 577 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
+.++++++.+++. ...| |..+|+.+-..+... +.++++++.++++++++|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5688999998887 3334 788898776666654 457899999999999999985544
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHhCC
Q 003746 633 VLLSNIH---ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 633 ~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 659 (798)
..++.+. ...|..++....+.++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4333221 23577778888888887643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7.1e-05 Score=61.58 Aligned_cols=66 Identities=24% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999988753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=77.02 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=115.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPN----------------EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS- 563 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 563 (798)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34567788888888887776422211 1236778899999999999999999887643222222
Q ss_pred ---chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CC
Q 003746 564 ---KHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL------QP 626 (798)
Q Consensus 564 ---~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p 626 (798)
.+.+.+...+...|++++|.+++++. ...+. ..++..|...+...|++++|...+++++.. .|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23445555666789999999988765 22232 567888999999999999999999998753 23
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....++..++.+|...|++++|..++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3345788899999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-05 Score=64.79 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVL 634 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 634 (798)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..+++++++.|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667778888888888888888876 3334 67889999999999999999999999999999998 667778
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 003746 635 LSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~ 653 (798)
++.++...|+.++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888777777655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=76.72 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACK 606 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 606 (798)
..+..+...+.+.|++++|.+.|+++++.. |.. ...-..+++. ...| +..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356666677777888888888887776521 110 0001111111 1223 4678999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=69.86 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD----------HEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34445555555444 2223 44555555555554444 569999999999999999999999999999875
Q ss_pred -----------ChhHHHHHHHHHHhCCC
Q 003746 644 -----------RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 644 -----------~~~~a~~~~~~m~~~~~ 660 (798)
++++|.+.|++..+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999987543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=58.66 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777777778888887777766 2233 57788888889999999999999999999999999888888888876
Q ss_pred hcC
Q 003746 641 SKG 643 (798)
Q Consensus 641 ~~g 643 (798)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=62.22 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=64.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 581 EAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 581 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 67788899999999999999999999999999999999999999999999999999999888653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00028 Score=76.44 Aligned_cols=112 Identities=9% Similarity=-0.078 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
.+..+...+.+.|++++|...|+++++. .|+...+ .-++..+ .+. -...+|..+..+|.+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~-~~~----~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL-----------SEKESKA-SES----FLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC-----------CHHHHHH-HHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC-----------ChHHHHH-HHH----HHHHHHHHHHHHHHHh
Confidence 4555666666677777777777666542 2221110 0011110 000 0256888999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00046 Score=55.53 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
++|...|..+..++...++ .++|..+++++++++|+++.....++.++...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3578888888888876655 79999999999999999999999999999999999999999999988654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=77.86 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCcc---hHH
Q 003746 572 LLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHDG---FHV 633 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 633 (798)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999998775 22343 45789999999999999999999999986 4566654 567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
.|+.+|..+|++++|..++++..+.-.. .. ...||...++..+|.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988652111 11 12499999999888888776544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=5.9e-05 Score=66.74 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 542 LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM----------LKEAEELIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
.+++|.+.++..++ +.| +...|..+..++...|+ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44444444444443 223 24444444444444433 34666666555 3344 355666666666655
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 609 -----------GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 609 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
|++++|++.|+++++++|++..+...+. ..++|.++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccc
Confidence 5899999999999999999865444432 234555555544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00026 Score=75.40 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=83.6
Q ss_pred HHHHhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---chH
Q 003746 571 DLLGRAGMLKEAEELIESM------PMSP---D-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHD---GFH 632 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~ 632 (798)
+-+.+.|++++|++++++. -+.| + ..+++.|+.+|...|++++|+.+++++++ +.|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654 1122 2 44788888999999999999999998885 355554 456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 003746 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703 (798)
Q Consensus 633 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 703 (798)
..|+.+|...|++++|..++++..+.-. +.- ...||...+++..|++...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988865211 111 1249999999999988888775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00037 Score=58.09 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788999999999999999999999999999999999999999999999999999999988754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00025 Score=75.36 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---chHHHHHH
Q 003746 576 AGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHD---GFHVLLSN 637 (798)
Q Consensus 576 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~ 637 (798)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 22233 34678888888888888888888888875 345554 45667888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003746 638 IHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999998888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=57.03 Aligned_cols=111 Identities=7% Similarity=-0.081 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHH
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERV 617 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 617 (798)
++++|.++|++..+. | .|+ .. |..+|...+..++|.+.|++.-..-+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666665442 2 122 22 555565666666666666665223456666666666666 6777777777
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
++++.+. .++.....|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777765 456677777777777 7788888888877776653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.29 E-value=7e-06 Score=84.38 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=193.7
Q ss_pred CCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 003746 77 PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~ 156 (798)
..++++.|...-++...|. .|..+..+....+...+|++-|-+ .-|+..|.-++.++.+.|.+++-...+..
T Consensus 37 ~i~~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~M 108 (624)
T 3lvg_A 37 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 108 (624)
T ss_dssp GGCCSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHT
T ss_pred hccccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455665555555554454 588899999999999999876632 24777899999999999999999988887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHH
Q 003746 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236 (798)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 236 (798)
+.+. ..++.+-+.|+-+|++.+++.+-.+.+ ..+|+.-...+..-+...|.++.|.-+|..+.. |..|..
T Consensus 109 aRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAs 178 (624)
T 3lvg_A 109 ARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLAS 178 (624)
T ss_dssp TSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSS
T ss_pred HHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHH
Confidence 7765 466778899999999999976644433 256777777888888888888888877776543 344555
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 316 (798)
.+.+.|++..|.+.-++. .++.||-.+-.+|...+.+.-|.-.--.++-. ||. +..++..|-..|.+++-..+
T Consensus 179 tLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 179 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHH
Confidence 566777777776554432 47889999999999999998876665444422 221 22344556677777777766
Q ss_pred HHHHHHhCC-ccchhHHHHHHHHHHhCCCHHHHHHHHH---h-cCCC-------ChhhHHHHHHHHHhcCCHHHHHH
Q 003746 317 HALAVKIGI-ECYINLQNALIHMYSSCGEITTAEKLFD---A-GHNL-------DLISWNSMISGYLKCGSVEKARA 381 (798)
Q Consensus 317 ~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~---~-~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 381 (798)
++..+ |+ .....+++-|.-.|+|- +.++-.+.++ + ..-| ....|.-++-.|.+-.++|.|..
T Consensus 252 lEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 252 LEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 66554 33 35677888888888876 3444444443 2 2222 23458888888888888887753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0033 Score=69.64 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=121.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCc----------HHHHHHHHHHHHHhCCCcC-CcchHHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGL----------VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 572 (798)
....++|++.++++.. ..|+.. .|+.--.++.+.|+ ++++.+.++++++. .| +...|+.-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445688999999998 567765 46655555666666 89999999999873 45 46778888888
Q ss_pred HHhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-----
Q 003746 573 LGRAG--MLKEAEELIESM-PMS-PDVATWGALLGACKKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASK----- 642 (798)
Q Consensus 573 ~~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 642 (798)
+.+.| ++++|.++++++ ... .+..+|+.-..++...| .++++++.++++++.+|++..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 333 47889999999998988 899999999999999999999999999988774
Q ss_pred ---------CChhHHHHHHHHHHhC
Q 003746 643 ---------GRWDDVLEVRGMMVRR 658 (798)
Q Consensus 643 ---------g~~~~a~~~~~~m~~~ 658 (798)
++++++.+.++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0036 Score=63.58 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 003746 490 KGVSSWNALIIGFA--MNGL---ADKSLEMFSEMKKSGVTPNEI-TFVGVLGAC 537 (798)
Q Consensus 490 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 537 (798)
.+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46667777665543 2233 4678888988888 567753 344433333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00092 Score=53.21 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=54.71 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
+...|+++++ ..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555665543 334 3566667777777777777777777765 2233 56778888888888888888888888888
Q ss_pred hcCCCC
Q 003746 623 ELQPDH 628 (798)
Q Consensus 623 ~~~p~~ 628 (798)
++.|+.
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0023 Score=67.89 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHHHHhC--CCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEH--RLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGA 604 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~ 604 (798)
|++++|..++++.++.. -+-|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555555555544321 11121 345666666677777777776666654 33454 4578899999
Q ss_pred HHHcCChhHHHHHHHHHHh-----cCCCCcchHHH
Q 003746 605 CKKHGDHEMGERVGRKLVE-----LQPDHDGFHVL 634 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 634 (798)
|...|++++|+.+++++++ +.|+++.+-.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 9999999999999999986 57888755443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0058 Score=53.38 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 581 (798)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998877 44433 556667777888899999998663 356777888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 003746 582 AEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 582 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 626 (798)
|.+.|++.-..-+...+..|...|.. .++.++|.+.++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988333577888889888888 8899999999999988743
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0044 Score=54.13 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcc
Q 003746 592 SPDVATWGALLGACKKHG---DHEMGERVGRKLVELQ-P-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 666 (798)
.++..+...+.+++.+.+ +.++|+.+++++++.+ | ++..+++.|+-.|.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 367777778888888877 5668888888888877 6 45677788888888888888888888888763
Q ss_pred ceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCC
Q 003746 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708 (798)
Q Consensus 667 s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 708 (798)
.|...++....+.+.+++++.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 244455666666667777777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0051 Score=65.39 Aligned_cols=99 Identities=14% Similarity=0.018 Sum_probs=65.7
Q ss_pred HHhcCcHHHHHHHHHHHHHhCC--CcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHR--LEPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGA 600 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 600 (798)
+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666666543211 1121 345666677777777777777776654 33454 457889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCcchHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVE-----LQPDHDGFHVLL 635 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l 635 (798)
|...|...|++++|+.+++++++ +.|+++.+-..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999986 578887665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.018 Score=67.42 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHHhcCChHHHHH-HHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 175 MYAVCGDLSAARK-LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 175 ~y~~~g~~~~A~~-~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
.....+++++|.+ ++..++. ......++..+.+.|..++|+++.+.- ..-.......|++++|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3345788888887 6644441 112366777778888888888766421 1223456678999999999877
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHH
Q 003746 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333 (798)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 333 (798)
+. +...|..+...+.+.|+++.|.++|.++.. |..+...+...++.+....+-......|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 64 567899999999999999999999998854 44444444445655555444444443331 12
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 003746 334 ALIHMYSSCGEITTAEKLFD 353 (798)
Q Consensus 334 ~li~~y~~~g~~~~A~~~~~ 353 (798)
.-...|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 33334555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0074 Score=61.33 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHH--hc---CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH----hcC-------CHHHHHHHH
Q 003746 524 TPNEITFVGVLGACR--HM---GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG----RAG-------MLKEAEELI 586 (798)
Q Consensus 524 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~----~~g-------~~~~A~~~~ 586 (798)
+.|...|...+.+.. .. ....+|..+|+++++ +.|+ ...|..+..+|. ..+ .+..|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445556666665543 22 346899999999987 5786 455554444332 111 112233322
Q ss_pred HhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 587 ESMPM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 587 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..+.. +.+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++......
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23322 347888988888888889999999999999999975 56788999999999999999999998876543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0041 Score=50.43 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677788888888888776 3334 566 88889999999999999999999999999998876532 344
Q ss_pred hHHHHHHHH
Q 003746 646 DDVLEVRGM 654 (798)
Q Consensus 646 ~~a~~~~~~ 654 (798)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0027 Score=51.56 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDG-FHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=48.28 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555556666666666555553 232 23455555555555666666655555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.14 Score=59.57 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
+.|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. +..+...+...++.+....+-+.
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 6677777777766553 456778888888888888888888776642 22333333345555554444444
Q ss_pred HHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 452 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
....|. ++....+|.++|++++|.+++ .+.+++++|+.+-+.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 444331 233344566677777777664 344666666665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.013 Score=57.04 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=68.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhH
Q 003746 579 LKEAEELIESM-PMSPD---VATWGALLGACKK-----HGDHEMGERVGRKLVELQPDH-DGFHVLLSNIHASK-GRWDD 647 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 647 (798)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.|++++++.|+. ...++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 44555 5577788877777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003746 648 VLEVRGMMVRRGVVKIPG 665 (798)
Q Consensus 648 a~~~~~~m~~~~~~~~~~ 665 (798)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664455
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.32 Score=40.71 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=91.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
-.|..++..++..+.... .+..-++-++--....-+=+-..+.++.+-+-+.+ ..+|.+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666666666666542 23334444443333333444444455544222222 2456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 584 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
..+-.++ .+....+.-+.....+|+.++-.+++..++.-+|-++.+.+-++++|.+.|+..+|.+++++.=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6666664 244445666778889999999999999987777777899999999999999999999999999999985
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.028 Score=46.02 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-----P----MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.|+..+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...+++++++.|+++.....+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4445555555555555555443 0 123467889999999999999999999999999999997765544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.037 Score=44.18 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 561 PNSKHYGCMVDLLGRAGM---LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
++...+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|+..++++++..|.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 356667777777754444 68888888877 4445 5778888888889999999999999999999888443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.034 Score=48.45 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 562 NSKHYGCMVDLLGRAG---MLKEAEELIESM-PMS-P--DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
+..+.-.+..++.+.+ +.+++..++++. ... | ....+..|.-+|.+.|++++|.+.++++++++|++.....+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444444444444444 334455444443 112 3 24566778888999999999999999999999998765554
Q ss_pred H
Q 003746 635 L 635 (798)
Q Consensus 635 l 635 (798)
.
T Consensus 111 k 111 (152)
T 1pc2_A 111 E 111 (152)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.8 Score=40.94 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=81.1
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
+...++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456688888888887766 3566788888888888888888888887543 3444444555667665554
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44433221 1 24444555667788888888887775322221 1223456666666665554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.086 Score=44.16 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PDVATWGALLGACKKHGDHEM---GERVGRKLVELQ-P-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|+..+-..+.+++.+..+... ++.+++.++... | ..-.+.+.|+-.+.+.|++++|+++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444455555555444333 555555555544 3 2334455555556666666666666665554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=5.8 Score=43.76 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGV----LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 581 (798)
.+.+.|..+|......+ ..+......+ .......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 2233322222 22233344345666666665332 2333333444455557899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 582 AEELIESMPMSP-D-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 582 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
|...|+.|+..+ + ....-=+..+....|+.++|..+|+++.+ + .++|-.|
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 999999995432 2 22223355577788999999999999875 3 2456555
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.82 Score=38.92 Aligned_cols=91 Identities=8% Similarity=0.056 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccc
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 667 (798)
.|+..+-..+.+++.+..+ ..+++.+++.++...|. .-.+.+.|+-.|.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777776654 45778888888877774 4456667777888888888888888887763
Q ss_pred eEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCC
Q 003746 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708 (798)
Q Consensus 668 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 708 (798)
.|...++...-+.+.++|.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 244455666666667777777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.58 Score=41.83 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 316 (798)
...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|++... +..++-.+...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877665 3567899999999999999999999888754 34444444445665555544
Q ss_pred HHHHHHh
Q 003746 317 HALAVKI 323 (798)
Q Consensus 317 ~~~~~~~ 323 (798)
-+.....
T Consensus 83 a~iA~~~ 89 (177)
T 3mkq_B 83 QNIAQTR 89 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 4444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.044 Score=53.33 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCC
Q 003746 565 HYGCMVDLLGRA-----GMLKEAEELIESM-PMSP--DVATWGALLGACKK-HGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 565 ~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~ 627 (798)
.|..|+..|.+. |+.++|.+.|++. .+.| +..++......++. .|+.+++.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444444444442 5555555555554 3333 13444444444444 25555566666666555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.19 Score=52.26 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=221.8
Q ss_pred CchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHH
Q 003746 60 ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139 (798)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~ 139 (798)
..+.+|+.|-. ++. +.|++.+|...| +...|...|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-
T Consensus 52 n~p~VWs~Lgk--AqL-~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAK--AQL-QKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHH--HTT-TSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CCccHHHHHHH--HHH-ccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 45678888888 887 778888886655 34467778899999999999999999988766654 344455578899
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC------------------------CC
Q 003746 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP------------------------VL 195 (798)
Q Consensus 140 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------~~ 195 (798)
++++.+++.+-.... -.||..-...+.+-+...|.++.|.-+|..+. ..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998875544332 14666666777888888888888888887643 23
Q ss_pred CcchHHHHHHHHHhCCCHHHHHH----HHhhCCC-----------------------------CCchHHHHHHHHHhhcC
Q 003746 196 DLVSWNSILAGYVNADNVEEAKF----IYNKMPE-----------------------------RNIIASNSMIVLFGRKG 242 (798)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~----~~~~m~~-----------------------------~~~~~~~~li~~y~~~g 242 (798)
++.+|-.+-.+|+..+.+.-|-- +.-...+ ...-.++-|.-.|+|-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 67789999888888776654422 2111110 1334567777777764
Q ss_pred CHHHHHHHHhc----CCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchH
Q 003746 243 NVAEACRLFKE----MPKK-------DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311 (798)
Q Consensus 243 ~~~~A~~~f~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 311 (798)
+.++-.+-++. +--| +...|.-++-.|.+-.+++.|... |.+.. |+...-........+..+++
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~--~~Aw~h~~Fkdii~KVaN~E 351 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHP--TDAWKEGQFKDIITKVANVE 351 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCH--HHHCCGGGGTTTGGGCSCSH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCC--hhhccHHHHHHHHHHcchHH
Confidence 23333333222 2112 456788888888888888876543 22210 01010111111122222322
Q ss_pred HHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh-------------cCCCChhh-HHHHHHHHHhcCCHH
Q 003746 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-------------GHNLDLIS-WNSMISGYLKCGSVE 377 (798)
Q Consensus 312 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------------~~~~~~~~-~~~li~~~~~~g~~~ 377 (798)
.--+ ++..-+.-.+...|.|+..+...=+...+.++|++ ....|... -.++-..|....+++
T Consensus 352 iyYK----Ai~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 352 LYYR----AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp HHHH----HHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHH----HHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 2111 11111222333344455444444444444455443 22233332 334445556666655
Q ss_pred HHHHHHHhcC------------CCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 378 KARALFDAMI------------EKDVVSWSTM-ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 378 ~A~~~~~~m~------------~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
.-+...+.-. +.+..-+..+ ...|.++++|++++.+.++ .++ |.-.+...+.+++.+-
T Consensus 428 ~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAietAa~S~~~el 498 (624)
T 3lvg_A 428 ALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQYASESKDTEL 498 (624)
T ss_dssp HHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGTTTTTCCCTTH
T ss_pred HHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHHHHHHcCCHHH
Confidence 5444333222 2233333332 3457778888888776542 222 2223444567888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
+.++++..++.|-. ..+.+.+-.+...=++|.+.++-
T Consensus 499 aeeLL~yFv~~g~~---EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 499 AEELLQWFLQEEKR---ECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHHHHHHHHHCST---HHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCch---HHHHHHHHHHhhccChHHHHHHH
Confidence 88888888887632 33334443444444566666653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.24 Score=40.28 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQ-------PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..-+..|+..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556788999999999999999999998753 334567889999999999999999999998764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.69 Score=52.02 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
-..-|...|+++.|+++++++...-|++-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556778999999999999999999999999999999999999999999988874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.80 E-value=1 Score=37.61 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=50.0
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKE---AEELIESM-PMS-P--DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
|+..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444455555555554444 55555554 212 3 2334566778899999999999999999999999977655
Q ss_pred HH
Q 003746 634 LL 635 (798)
Q Consensus 634 ~l 635 (798)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.63 E-value=0.93 Score=38.06 Aligned_cols=66 Identities=8% Similarity=0.015 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.|+..+--.+.+++.+..+ ..+++.+++.+++..|. .-.+++.|+-.+.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555556666655543 34677777777766663 345566667777777777777777777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.08 E-value=1.6 Score=37.51 Aligned_cols=55 Identities=9% Similarity=-0.061 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 576 AGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.++.++|.++|+.+ .. +.=..+|-....--.++|+.+.|.+++.+++++.|.+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 36667777777666 11 111667777777777889999999999999998887643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.96 E-value=20 Score=35.73 Aligned_cols=164 Identities=13% Similarity=0.065 Sum_probs=87.9
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCchhHHHHHHHHhccC
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF----MNMIDHRVMVDEVVVVSVLSACANLT 308 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 308 (798)
++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 445556666777777666532 223445566665555444 33445677777777766666666544
Q ss_pred chH-----HHHHHHHHHHHhC--CccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003746 309 VVK-----AGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381 (798)
Q Consensus 309 ~~~-----~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 381 (798)
.-+ -......+-.+.| ..-|+.....+...|.+.+++.+|+..|=.+..+.+..+..++--+.+.+...++
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~-- 186 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA-- 186 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--
Confidence 321 1222333334444 3456777888888888888888887777544444445554444433333321111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003746 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 382 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 418 (798)
|. .....+--|...++...|..+|+...
T Consensus 187 --------dl-fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------PL-YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------HH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------HH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 11223334555566666666555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.09 E-value=1.6 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=45.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
.+|.++|.++|+.++.+...-+-++...+..-.+.|+...|++++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 379999999999998875555667777788888999999999999998876653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.94 E-value=50 Score=38.06 Aligned_cols=215 Identities=8% Similarity=0.008 Sum_probs=96.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CC---CHHH--HHHHHHH
Q 003746 369 GYLKCGSVEKARALFDAMIE----KDV--VSWSTMISGYAQHDQFSETLSLFMEMQHHGI--RP---DEAT--LVSVISA 435 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---d~~t--~~~ll~a 435 (798)
|....|+.+++..+++.... .+. ..-..+.-|....|..++++.++.......- .- +... -..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 44566677777777776554 121 2233344455666666667776665544211 00 0111 1111111
Q ss_pred Hhcccc-hhHHHHHHHHHHHcCCCCcH--HHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChH
Q 003746 436 CTHLVA-LDQGKWIHAYIRKNGLKINS--ILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 436 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 509 (798)
.+..|. -+++...+..++...- ... ...-+|.-.|.-.|+-+....++..+.+. ++.-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222222 1233333333333211 111 11122333344556666656655543321 1222233334455667777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEI-TFV---GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 585 (798)
.+..+.+.+... +|.. -|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777777652 2322 232 2334566777776666677776542 112222222222233335555555555
Q ss_pred HHhC
Q 003746 586 IESM 589 (798)
Q Consensus 586 ~~~~ 589 (798)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.28 E-value=27 Score=34.42 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred HHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH----H
Q 003746 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL----F 282 (798)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~ 282 (798)
-...|++=||.+.++ ++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 344566666666544 455666666777777766532 22344556776655554 3
Q ss_pred HHHHHCCCCCCchhHHHHHHHHhccCc-----hHHHHHHHHHHHHhCC--ccchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 003746 283 MNMIDHRVMVDEVVVVSVLSACANLTV-----VKAGTSVHALAVKIGI--ECYINLQNALIHMYSSCGEITTAEKLFDAG 355 (798)
Q Consensus 283 ~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 355 (798)
+-..+.+++++......++..+..... ..-.........+.|- ..|+.....+...|.+.|++.+|+..|-.+
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 444456777777777777766654321 1222333333333332 346778888888888888888887777544
Q ss_pred CCCChhhHHHHHHHH
Q 003746 356 HNLDLISWNSMISGY 370 (798)
Q Consensus 356 ~~~~~~~~~~li~~~ 370 (798)
...|...+..++--+
T Consensus 161 ~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 161 THDSMIKYVDLLWDW 175 (312)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 333444444444333
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.67 E-value=23 Score=32.13 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
++..+-...+..+++.|+.+....+...+..+|...-...+.++.+.|. .++...+.++..
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444444444443333333333444454444455555555554 345555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.23 E-value=6.9 Score=32.83 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
...+-.|.-++.+.|+++.|.+..+.+++.+|++..+..+
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4456678888999999999999999999999998765544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.16 E-value=5.9 Score=44.57 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003746 332 QNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (798)
.+.-++.+...|+++.|+++-++ ..+.+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34445667778999999999887 345567789999999999999999999999887
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.92 E-value=11 Score=32.01 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
...-.|.-++.+.|+++.|.+..+.+++.+|++..+..+.
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3455677889999999999999999999999997655443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.83 E-value=7.5 Score=30.48 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
.+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++-.+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 4566799999999999988899999988765 45677777777776776554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.53 E-value=7.2 Score=30.51 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=41.3
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
.+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++-.+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 4567799999999999999999999988865 46788888887777776655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.34 E-value=19 Score=30.25 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=49.7
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
.+|++......+-.+.. +....+.-+.....+|+-+.-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44444444444433322 223344455666677777777777666433 2456666777777777777777777777777
Q ss_pred HHHcCCC
Q 003746 452 IRKNGLK 458 (798)
Q Consensus 452 ~~~~~~~ 458 (798)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7666643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.92 E-value=38 Score=33.36 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=102.4
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH----HH
Q 003746 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL----FM 415 (798)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~ 415 (798)
...|++-+|.+. |.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 345566666554 34555566677777777776543 23345566776655554 44
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcccchh-HHHHHHHHHH----HcC--CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC
Q 003746 416 EMQHHGIRPDEATLVSVISACTHLVALD-QGKWIHAYIR----KNG--LKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488 (798)
Q Consensus 416 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 488 (798)
-..+.++++|..+...++..+.....-+ .-..+...++ +.| ..-++.....+...|.+.|++.+|+.-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 4556678888887777777665533211 1233333333 332 23477788888899999999999988775322
Q ss_pred CCCcchHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 489 EKGVSSWNALIIGFAMN---GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 489 ~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
..+...+..|+.-+... |...++-- ..-.+++ -|.-.|++..|...|+...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 22344444444433333 33322211 1112222 344567888888888877553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=82.40 E-value=29 Score=31.67 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH
Q 003746 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302 (798)
Q Consensus 223 m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 302 (798)
+..++..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|.. +++..+.++.. .++...-...+.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 33344444444455555555444333444444444444444444555554443 23333333332 133333334444
Q ss_pred HHhccCc
Q 003746 303 ACANLTV 309 (798)
Q Consensus 303 a~~~~~~ 309 (798)
++...+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 4444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.81 E-value=37 Score=35.66 Aligned_cols=203 Identities=10% Similarity=0.089 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHhHHHh----hHHhc
Q 003746 405 DQFSETLSLFMEMQHH-----GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLID----MYMKL 474 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~-----g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~ 474 (798)
|++++|++.+..+.+. +..........++..|...++++...+....+.+. |..+.. ...++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 7889999888776542 23445667888999999999999887777666544 333222 223333 23233
Q ss_pred CCHH--HHHHHHhhcCC---CCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q 003746 475 GCVD--NALEVFHGTEE---KGV-------SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-----ITFVGVLGAC 537 (798)
Q Consensus 475 g~~~--~A~~~~~~~~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~ 537 (798)
...+ .-..+.+.... .-+ .....|...|...|++.+|.+++.++...-...+. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22333333321 111 13456788899999999999999998753222222 2466667889
Q ss_pred HhcCcHHHHHHHHHHHHHh-CCC--cCC--cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003746 538 RHMGLVDEGHRHFNSMIQE-HRL--EPN--SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 612 (798)
...+++.+|..++.++... +.. .|+ ...|.+++..+...+++.+|...|.+. ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 9999999999999987432 111 222 456788899999999999998876664 33444455555
Q ss_pred HHHHHHHHH
Q 003746 613 MGERVGRKL 621 (798)
Q Consensus 613 ~A~~~~~~~ 621 (798)
....++..+
T Consensus 256 ~~~~~L~~~ 264 (445)
T 4b4t_P 256 KWKPVLSHI 264 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=3.7 Score=42.59 Aligned_cols=60 Identities=15% Similarity=-0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...++..+...|+++++...++.++..+|-+...+..|..+|.+.|+..+|.+.|+...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667778889999999999999999999988999999999999999999999887753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.06 E-value=12 Score=32.88 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
..-+.++..|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46677889999999999999998865
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.86 E-value=7.1 Score=34.23 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
++..+..++...|++.+|...|++.++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344555566666666666666666543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=80.25 E-value=35 Score=31.14 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 003746 409 ETLSLFMEMQH 419 (798)
Q Consensus 409 ~A~~l~~~m~~ 419 (798)
++...+.++..
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 798 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 2e-07
Identities = 47/417 (11%), Positives = 115/417 (27%), Gaps = 53/417 (12%)
Query: 240 RKGNVAEACRLFKEMPKKD---LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
+ G+ A R ++ +++ L S + Q + + I ++
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---- 66
Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
E Y NL N I
Sbjct: 67 ----------------------------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
+ N + +A A+ + G +
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158
Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTTLIDM---YM 472
++ +P+ A S + + QG+ A + + ++ I++
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFN----AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 473 KLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
+ D A+ + L + GL D +++ + + + P+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPD 272
Query: 530 FVGVLG-ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE- 587
L A + G V E +N+ ++ ++ + ++ G ++EA L
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 588 SMPMSPDVATWGALLG-ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
++ + P+ A + L ++ G + ++ + + P + + N
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 4e-07
Identities = 40/333 (12%), Positives = 103/333 (30%), Gaps = 14/333 (4%)
Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFD 384
+ L ++ C + + + +++++ + Y + G +++A +
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
+ I+ A + + V
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 445 GKWIHAYIRKNGLKINSILGTT-LIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALII 500
+ Y++ + N + + L ++ G + A+ F + ++ L
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC-RHMGLVDEGHRHFNSMIQEHRL 559
+ D+++ + + L GL+D + I+
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGN--LACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIE--SMPMSPDVATWGALLGACKKHGDHEMGERV 617
P++ Y + + L G + EAE+ + L ++ G+ E R+
Sbjct: 270 FPDA--YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
RK +E+ P+ H L+++ +G+ + L
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.3 bits (91), Expect = 0.001
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 575 RAGMLKEAEEL----IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
G L++A EL I++ P + + + GD E + + ++L P++
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASL--RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
L ++ + D + G
Sbjct: 66 GASQLRHLVKAAQARKDFAQGAATAKVLG 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 80.27 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5.6e-19 Score=186.51 Aligned_cols=369 Identities=11% Similarity=0.056 Sum_probs=262.5
Q ss_pred HHHHHhhcCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 234 MIVLFGRKGNVAEACRLFKEMPK--K-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 234 li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
+...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+. .|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~----------------- 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPL----------------- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------
Confidence 34556666777777777766532 2 4556666666677777777777777666552 122
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhc-
Q 003746 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAM- 386 (798)
Q Consensus 311 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 386 (798)
+..++..+...|.+.|++++|.+.+... .+.+...+..........+....+.......
T Consensus 66 -----------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 66 -----------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp -----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334455555566666666666665542 2222233333333333334333333333222
Q ss_pred --CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHH
Q 003746 387 --IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464 (798)
Q Consensus 387 --~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (798)
.......+..........+....+...+.+..... +-+...+..+...+...+..+.|...+..+++.. +.+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 23344455556666667777777777777766542 2244556666677777888888888888877764 3356677
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHM 540 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 540 (798)
..+...|...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+. .|+ ..++..+..++...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 7888889999999999998887654 34567888889999999999999999999884 555 45788888999999
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (798)
|++++|.+.++..... .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..+
T Consensus 285 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998763 3345788889999999999999999999986 5566 5778999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 619 RKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 619 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
+++++++|+++.++..|+.+|.+.|+
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-17 Score=176.48 Aligned_cols=352 Identities=13% Similarity=0.133 Sum_probs=279.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCC
Q 003746 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344 (798)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 344 (798)
+...+.+.|++++|++.|+++.+. . +.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~----------------------------------p~~~~~~~~la~~~~~~~~ 48 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--E----------------------------------PDNTGVLLLLSSIHFQCRR 48 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--C----------------------------------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--C----------------------------------CCCHHHHHHHHHHHHHcCC
Confidence 344566677777777777766552 1 2244556777888889999
Q ss_pred HHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003746 345 ITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 345 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 418 (798)
+++|...|++. .+.+..+|..+...|.+.|++++|...+..... .+...+..........+....+........
T Consensus 49 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999873 345567899999999999999999999988753 345555566666666677777777666665
Q ss_pred HcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchH
Q 003746 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSW 495 (798)
Q Consensus 419 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 495 (798)
..... ...............+....+........... +.+...+..+...+...|++++|...++...+ .+..+|
T Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 206 (388)
T d1w3ba_ 129 QYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206 (388)
T ss_dssp HHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccccc-cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH
Confidence 55433 33344444555566677777777777776654 34566777888999999999999999987653 346689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG 574 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 574 (798)
..+...+...|++++|+..|++....+ ..+...+..+...+.+.|++++|...|+++++ +.|+ ...+..+...|.
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998853 33456778888999999999999999999976 4564 778899999999
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 575 RAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
..|++++|.+.++.. ..+.+...+..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|.+.+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887 234578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 003746 653 GMMVRR 658 (798)
Q Consensus 653 ~~m~~~ 658 (798)
++..+.
T Consensus 363 ~~al~l 368 (388)
T d1w3ba_ 363 KEAIRI 368 (388)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9e-13 Score=134.73 Aligned_cols=239 Identities=13% Similarity=-0.011 Sum_probs=161.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcC
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 475 (798)
....+.+.|++++|+..|+++.+. .| +..++..+..++...|+++.|...+..+++... .+...+..+...|.+.|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 455677788888888888887764 34 344555556666666666666666666665432 23445555555555666
Q ss_pred CHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 476 CVDNALEVFHGTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
++++|.+.++.....+.. .+....... ...+.......+..+...+...++.+.|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666655555543321110 000000000 000000111122334455678888899988
Q ss_pred HHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 553 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
+++...-.++...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|++.++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 8764333345677888999999999999999999987 3344 5888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
++..++.+|...|++++|.+.+++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.1e-12 Score=130.64 Aligned_cols=268 Identities=15% Similarity=0.070 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
+--....+.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 33456678899999999999999853 367899999999999999999999999988753 22466777788889999
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
|++++|.+.+..+.+.... ............. ..+.......+..+...+...+|.+.|.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPA--YAHLVTPAEEGAG---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTT--TGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccc--hHHHHHhhhhhhh---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999998875422 1110000000000 0011111112233445566778888888877
Q ss_pred HCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 003746 520 KSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DV 595 (798)
Q Consensus 520 ~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 595 (798)
+... .++...+..+...+...|++++|...|++.++. .|+ ...|..+...|.+.|++++|.+.|++. ...| +.
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 6422 234567778888899999999999999998763 454 778889999999999999999999987 4445 57
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH-----------HHHHHHHHhcCChhHHHHH
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH-----------VLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~~~ 651 (798)
.+|..++.+|...|++++|+..|++++++.|++...+ ..+..++...|+++.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999999999999999998876543 3456666667776655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.2e-08 Score=102.35 Aligned_cols=259 Identities=12% Similarity=-0.051 Sum_probs=169.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcccchhHHHHHHHHHHHcC----C-CCcHHHHhHHHh
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPD----EATLVSVISACTHLVALDQGKWIHAYIRKNG----L-KINSILGTTLID 469 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~ 469 (798)
..+...|++++|++++++........+ ...+..+..++...|++++|...+..+.+.. . ......+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666666666554311111 1233344445556666666666665554321 0 011233445566
Q ss_pred hHHhcCCHHHHHHHHhhcCC-------CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEE-------KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT----PNEITFVGVL 534 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll 534 (798)
.|...|++..|...+..... +. ...+..+...+...|+++.+...+.+....... ....++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67777887777777665331 11 124556677888889999999998887763222 1223555566
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHH
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-----DVATWGALLG 603 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~ 603 (798)
..+...+...++...+.+......-..+ ...+..+...+...|++++|...+++. ...| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6777888899888888776543222111 334566777888999999999999887 2221 2446677888
Q ss_pred HHHHcCChhHHHHHHHHHHh------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 604 ACKKHGDHEMGERVGRKLVE------LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++...|++++|...+++++. ..|+....+..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999874 4466667888999999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=4.8e-08 Score=97.89 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=142.7
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---C-cchHHHHHHHHHHcCChHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---G-VSSWNALIIGFAMNGLADKSLEMF 515 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~ 515 (798)
+..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345677888888887655666777888888888999999999999886542 2 236888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 003746 516 SEMKKSGVTPNEITFVGVLG-ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM----P 590 (798)
Q Consensus 516 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 590 (798)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+++. .+.+...+...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 998875432 2333433332 234468899999999999874 2335778888899999999999999999886 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 591 MSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 591 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
..|+ ...|...+.--..+|+.+.+..+.+++.++.|+...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 3442 557888888888899999999999999888887643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=4.5e-09 Score=105.69 Aligned_cols=189 Identities=6% Similarity=0.091 Sum_probs=112.2
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003746 463 LGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL-ADKSLEMFSEMKKSGVTPNE-ITFVGVLGAC 537 (798)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 537 (798)
.++.+...+.+.+..++|++.++++.+. +..+|+....++...|+ +++|+..+++..+. .|+. .+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 3344444555566666666666665532 34456666666665543 66666666666653 3443 3566666666
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD---- 610 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---- 610 (798)
.+.|++++|++.++++++ +.| +...|..+...+.+.|++++|.+.++++ ...| +...|+.+...+...++
T Consensus 123 ~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 666666666666666654 344 3566666666666666666666666665 3333 45566666555554443
Q ss_pred --hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 611 --HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 611 --~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+++|++.+.+++++.|++...+..++.++...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 456666677777777777766666666654443 4556666655544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=5.3e-09 Score=106.57 Aligned_cols=228 Identities=9% Similarity=-0.085 Sum_probs=160.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV--ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 482 (798)
|++++|+.++++..... +-+...+.....++...+ +.+++...+..+++.........+..+...+...|..++|..
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence 44567777777766542 223334444444444443 456777777777766433222233344567777899999999
Q ss_pred HHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Q 003746 483 VFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559 (798)
Q Consensus 483 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 559 (798)
.++...+. +..+|+.+...+...|++++|...+++.... .|+. ......+...+..+++...+...... -
T Consensus 166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~ 238 (334)
T d1dcea1 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--R 238 (334)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--C
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--C
Confidence 99988765 4568888999999999998887766554442 2222 22333445566777788888877652 2
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 560 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
+++...+..++..+...|+.++|.+.+.+. ...| +..+|..++..+...|++++|++.++++++++|++..+|..|+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 334667777888889999999999998877 5555 46788999999999999999999999999999999888888876
Q ss_pred HHH
Q 003746 638 IHA 640 (798)
Q Consensus 638 ~~~ 640 (798)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=2.7e-07 Score=94.00 Aligned_cols=284 Identities=10% Similarity=-0.024 Sum_probs=138.9
Q ss_pred HHHHHhCCCHHHHHHHHHhc--CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHH
Q 003746 336 IHMYSSCGEITTAEKLFDAG--HNLD------LISWNSMISGYLKCGSVEKARALFDAMIE-----KD----VVSWSTMI 398 (798)
Q Consensus 336 i~~y~~~g~~~~A~~~~~~~--~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li 398 (798)
...+...|++++|.+++++. ..|+ ...++.+...|...|++++|...|++... .+ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44455666666666666541 1111 12344445555566666666666555421 11 12344455
Q ss_pred HHHHhCCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 399 SGYAQHDQFSETLSLFMEMQHH----GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
..+...|++..+...+.+.... +..+.. .....+..+...|...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~--------------------------------~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLP--------------------------------MHEFLVRIRAQLLWAW 146 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST--------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhh--------------------------------HHHHHHHHHHHHHHHh
Confidence 5555666666666655544321 111000 0111223334444555
Q ss_pred CCHHHHHHHHhhcCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHhc
Q 003746 475 GCVDNALEVFHGTEEK--------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTPNE--ITFVGVLGACRHM 540 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~--~t~~~ll~a~~~~ 540 (798)
|+++.|...+...... ...++..+...+...|+..++...+.+.... +..+.. ..+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 5555555544433210 1123344444455555666555555544321 111111 1233344455666
Q ss_pred CcHHHHHHHHHHHHHhCCCcC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC
Q 003746 541 GLVDEGHRHFNSMIQEHRLEP--NSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD-VATWGALLGACKKHGD 610 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~ 610 (798)
|+.++|...++...+...-.+ ....+..+...|...|++++|...+++. +..|+ ..+|..+...|...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 677777766665533211111 1233445666677777777776666654 22232 3456667777777777
Q ss_pred hhHHHHHHHHHHhcCC---------CCcchHHHHHHHHHhcCChhHHHHH
Q 003746 611 HEMGERVGRKLVELQP---------DHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
+++|.+.+++++++.+ +.......+...+...++.+++.+-
T Consensus 307 ~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 7777777777766432 1223334444556667777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.3e-08 Score=102.16 Aligned_cols=161 Identities=6% Similarity=0.024 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCcCC-cchHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPN-SKHYGCMV 570 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 570 (798)
.++.+...+.+.+++++|+++++++++ +.|+.. .|.....++...| ++++|...++++++ +.|+ ...|..+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~---~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HHHhhhhHHHHHh
Confidence 567778889999999999999999999 578776 5677777777766 59999999999987 4564 88999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR---- 644 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---- 644 (798)
..+.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++++|++...|..++.++...|+
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999999998 4445 688999999999999999999999999999999999999999999888877
Q ss_pred --hhHHHHHHHHHHhCC
Q 003746 645 --WDDVLEVRGMMVRRG 659 (798)
Q Consensus 645 --~~~a~~~~~~m~~~~ 659 (798)
+++|.+.+.+..+..
T Consensus 200 ~~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV 216 (315)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhHHhHHHHHHHHHhC
Confidence 467887777776544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.2e-08 Score=99.48 Aligned_cols=87 Identities=18% Similarity=0.072 Sum_probs=39.9
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGL 542 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 542 (798)
+..+|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.|++..+. .|+ ..++..+..++...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhh
Confidence 34444444455555444444332 23344444555555555555555555554442 222 2234444444444555
Q ss_pred HHHHHHHHHHHHH
Q 003746 543 VDEGHRHFNSMIQ 555 (798)
Q Consensus 543 ~~~a~~~~~~~~~ 555 (798)
+++|...|++.++
T Consensus 121 ~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=5.3e-08 Score=94.75 Aligned_cols=195 Identities=10% Similarity=-0.081 Sum_probs=122.3
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC
Q 003746 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL 507 (798)
Q Consensus 431 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 507 (798)
.+..++.+.|++++|...+..+++.. +.++.+++.+..+|.+.|++++|.+.|++..+. +..+|..+...|...|+
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 33444555555555555555555543 235666777888888888888888888876642 45678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC----HHHH
Q 003746 508 ADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM----LKEA 582 (798)
Q Consensus 508 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A 582 (798)
+++|++.|++..+. .|+ ......+..++.+.+..+....+...... ..+....++ ++..+..... .+.+
T Consensus 121 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 99999999998874 444 33333444455555655555555555433 223333332 2333322222 2222
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 583 EELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 583 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222111 11232 34678889999999999999999999999999886444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=5.7e-07 Score=89.77 Aligned_cols=183 Identities=8% Similarity=-0.011 Sum_probs=143.7
Q ss_pred hcCCHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEE----KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
..+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|.+++|.+
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 44556788888887542 35567898999999999999999999999875333234478888999999999999999
Q ss_pred HHHHHHHhCCCcC-CcchHHHHHHHH-HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 549 HFNSMIQEHRLEP-NSKHYGCMVDLL-GRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 549 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
+|+++++. .| +...|...+... ...|+.+.|..+|+++ ..+.+...|...+..+...|+.+.|..+|+++++.
T Consensus 156 i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999763 34 455555555443 4468999999999988 23346889999999999999999999999999998
Q ss_pred CCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 625 QPDHDG----FHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 625 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.|.++. .+......-...|+.+.+.++.+++.+.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 776543 4555666667789999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=9.1e-09 Score=104.78 Aligned_cols=254 Identities=7% Similarity=-0.119 Sum_probs=179.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-H---HHHHH-------HhcccchhHHHHHHHHHHHcCCCCcHHH
Q 003746 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL-V---SVISA-------CTHLVALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 395 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~---~ll~a-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
..++......+..++|++++++.... .|+..+. + .++.. ....+.++++..+++.+++.. +.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33444444445568999999988774 5765442 1 22222 233455778888888888765 335566
Q ss_pred HhHHHhhHHhcC--CHHHHHHHHhhcCCC---CcchHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003746 464 GTTLIDMYMKLG--CVDNALEVFHGTEEK---GVSSWNAL-IIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGA 536 (798)
Q Consensus 464 ~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 536 (798)
+..+..++...+ ++++|...++.+.+. +...|... ...+...|.+++|+..+++.... .|+ ...|..+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 666666665554 588999998887543 45555544 46677789999999999988875 444 4578888888
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
+...|++++|...+....+. .|+ ...+...+...+..++|...+.+. ..+++...+..++..+...|+.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888888776666554331 222 112334455667777777777665 2234555677778888888999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...+.+.++.+|++..++..++.+|...|++++|.+.+++..+..
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999987743
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2e-07 Score=77.72 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
+..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44555666666666666665 2233 456666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhC
Q 003746 648 VLEVRGMMVRR 658 (798)
Q Consensus 648 a~~~~~~m~~~ 658 (798)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777666653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=1.5e-07 Score=87.45 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.+...+..|.+.|++++|+..|+++ ...| +...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3334444455555555555555443 2222 3445555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHH
Q 003746 643 GRWDDVLEVRGMMV 656 (798)
Q Consensus 643 g~~~~a~~~~~~m~ 656 (798)
|++++|...+++..
T Consensus 86 ~~~~~A~~~~~~al 99 (201)
T d2c2la1 86 ESYDEAIANLQRAY 99 (201)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.9e-07 Score=75.28 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=89.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHG 609 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 609 (798)
-...+...|++++|..+|+++++ ..| +...|..+..+|.+.|++++|++.+++. .+. .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 34567788999999999999876 355 4778889999999999999999999887 333 47889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
++++|+..++++++++|+++.++..+.++-+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888876643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.9e-06 Score=78.90 Aligned_cols=139 Identities=8% Similarity=0.016 Sum_probs=95.9
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 547 (798)
..+...|+++.|++.|+++..++..+|..+...|...|++++|++.|++.++. .|+. ..|..+..++.+.|++++|.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHH
Confidence 34567788888888888877777777888888888888888888888888773 4544 46777777788888888888
Q ss_pred HHHHHHHHhCCCcCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 548 RHFNSMIQEHRLEPNSK-HYGCMVDLLGRAGMLKEAEELIESMPMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
..|++.+.. .+++.. .|. ..| ...+.+ ..++..+..++.+.|++++|.+.+++++++.
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888877652 122210 010 000 001111 3456677788888999999999999999888
Q ss_pred CCCc
Q 003746 626 PDHD 629 (798)
Q Consensus 626 p~~~ 629 (798)
|+..
T Consensus 151 ~~~~ 154 (192)
T d1hh8a_ 151 SEPR 154 (192)
T ss_dssp CSGG
T ss_pred CCcc
Confidence 8753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.42 E-value=2.9e-07 Score=75.94 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 567 GCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
-.++..+.+.|++++|...|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999987 4445 688999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 003746 645 WDDVLEVRGMM 655 (798)
Q Consensus 645 ~~~a~~~~~~m 655 (798)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.1e-06 Score=77.85 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG 609 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 609 (798)
....|.+.|++++|...|+++++ +.| +...|..+...|...|++++|.+.|+++ ...| +..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34567788999999999999876 456 4788888999999999999999999887 4445 5789999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChhHHHHH
Q 003746 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIH--ASKGRWDDVLEV 651 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 651 (798)
++++|...+++++++.|+++.++..+..+. ...+.++++...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998887776554 333456666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=5.8e-07 Score=83.28 Aligned_cols=111 Identities=8% Similarity=-0.147 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 525 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
|+...+......+.+.|++++|+..|+++++ +.| +...|..+..+|.+.|++++|...|+++ .+.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 5666677777888889999999999988876 345 4778888999999999999999999887 5667 47789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
..+|...|++++|+..+++++++.|++...+......
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999999999999999888765544433333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.7e-06 Score=76.48 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
.....|.+.|++++|...|++. ...| +...|..+..+|...|++++|+..++++++++|++..++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3466788999999999999988 4445 6889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 003746 646 DDVLEVRGMMVRRG 659 (798)
Q Consensus 646 ~~a~~~~~~m~~~~ 659 (798)
++|.+.+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=8.7e-06 Score=74.25 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=78.1
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 614 (798)
+...|++++|++.|.++ .+|+...|..+...|...|++++|.+.|++. .+.| +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34455566666555443 2344455555666666666666666666655 3333 466777777777777777777
Q ss_pred HHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHD----------------GFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..|+++++..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777777776544332 346688999999999999999998887644
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-06 Score=72.58 Aligned_cols=106 Identities=15% Similarity=0.050 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM---LKEAEELIESM-PMSPDV---ATWGALL 602 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~ 602 (798)
..+++.+...+++++|.+.|++.++ +.| +..++..+..+|.+.++ +++|+++++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3567778888899999999999876 445 47888888888887554 45699999887 444432 3788999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
.+|.+.|++++|++.++++++++|++..+...+..+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999988776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=3.7e-06 Score=82.78 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=128.6
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEE-----KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV---TPN--EITFV 531 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~ 531 (798)
...++|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678888888888888876653 12 34788889999999999999999988654211 111 23455
Q ss_pred HHHHHHH-hcCcHHHHHHHHHHHHHhC---CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC---C----C-HHH
Q 003746 532 GVLGACR-HMGLVDEGHRHFNSMIQEH---RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMS---P----D-VAT 597 (798)
Q Consensus 532 ~ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p----~-~~~ 597 (798)
.+...|. ..|++++|.+.++++.+-. +-.+. ..++..+...|...|++++|.+.++++ ... + . ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 4699999999999886421 21221 456788899999999999999999886 111 1 1 123
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch-----HHHHHHHHHh--cCChhHHHHHHHHH
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-----HVLLSNIHAS--KGRWDDVLEVRGMM 655 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~m 655 (798)
+...+..+...|+++.|...++++.+++|..+.. ...|..+|.. .+++++|.+.|+.+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455566778899999999999999998864432 3345555554 35678888877543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=5.4e-06 Score=74.00 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.|+.+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5677888899999999999999887 4455 7889999999999999999999999999999999999999998887766
Q ss_pred CChhHH
Q 003746 643 GRWDDV 648 (798)
Q Consensus 643 g~~~~a 648 (798)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=3.6e-05 Score=75.40 Aligned_cols=204 Identities=9% Similarity=-0.048 Sum_probs=110.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHH----GIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 471 (798)
....|...|++++|++.|.+.... +-.++ ..+|..+..++.+.|++++|...+....+. +
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~---------------~ 107 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------F 107 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------h
Confidence 456677778888888888776542 11111 123333344444444444444443332221 1
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCcHHH
Q 003746 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM-NGLADKSLEMFSEMKK----SGVTPN-EITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~ 545 (798)
.+.|+...+. .++..+...|.. .|++++|++.|++..+ .+..+. ..++..+...+...|++++
T Consensus 108 ~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 108 THRGQFRRGA-----------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHTTCHHHHH-----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccchhHH-----------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 1222222221 234455555533 5777777777777643 121221 2256677788888888888
Q ss_pred HHHHHHHHHHhCCCcCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHc--CCh
Q 003746 546 GHRHFNSMIQEHRLEPNS-----KHYGCMVDLLGRAGMLKEAEELIESM-PMSPD------VATWGALLGACKKH--GDH 611 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~--g~~ 611 (798)
|..+|+++.+...-.+.. ..+..++..+...|+++.|...+++. ...|+ ......++.++... +.+
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence 888888876632211111 12344555667788899998888887 33332 22445566665542 346
Q ss_pred hHHHHHHHHHHhcCC
Q 003746 612 EMGERVGRKLVELQP 626 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p 626 (798)
++|+..|+++.+++|
T Consensus 257 ~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 257 SEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhhcCH
Confidence 777777776666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9.4e-06 Score=68.40 Aligned_cols=92 Identities=9% Similarity=0.068 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-------FHVLLS 636 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 636 (798)
+..+++.|.+.|++++|++.|++. ...| +..+|..+..+|.+.|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888889999999888877 3344 6888999999999999999999999999999888765 455677
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003746 637 NIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.4e-05 Score=71.12 Aligned_cols=112 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
.+......+.+.|++++|...|.+.++-....+..... . ......+ -..+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~--~---------~~~~~~~--------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--E---------AQKAQAL--------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH--H---------HHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH--H---------Hhhhchh--------HHHHHHHHHHHHHhh
Confidence 34444556777788888888887776643222221110 0 0000000 123577788899999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++++|+..++++++++|+++.++..++.+|...|++++|...++...+..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5e-06 Score=69.16 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCC--cchHHHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG---DHEMGERVGRKLVELQPDH--DGFHVLLSNI 638 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~ 638 (798)
...+++.+...+++++|++.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|++ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788889999999999999988 3334 6788999999987644 5567999999999988765 3478899999
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 003746 639 HASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 639 ~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|.+.|++++|.+.++++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999998743
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=2.9e-05 Score=67.68 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+|..+..+|.+.|++++|++.++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=4.7e-05 Score=67.47 Aligned_cols=92 Identities=9% Similarity=-0.025 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.|+.+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666888899999999999999887 3334 6889999999999999999999999999999999999988888887766
Q ss_pred CChh-HHHHHHHHHH
Q 003746 643 GRWD-DVLEVRGMMV 656 (798)
Q Consensus 643 g~~~-~a~~~~~~m~ 656 (798)
+... ...++++.|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 6554 3455555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=2.4e-05 Score=69.56 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL 573 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 573 (798)
+......+...|++++|++.|++.++. +..........+. ..+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 445556677788888888888776541 0000000010000 11233 355677888899
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 574 GRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
.+.|++++|+..++++ .+.| +..+|..+..++...|++++|+..|+++++++|++..+...|..++.....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5556 578899999999999999999999999999999998888888776654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=4.9e-05 Score=66.11 Aligned_cols=126 Identities=9% Similarity=-0.123 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH
Q 003746 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572 (798)
Q Consensus 493 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 572 (798)
..+......+.+.|++.+|+..|++.+.. .|... ............. .....|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 35666777888888888888888887763 11100 0000000000000 113467778899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 573 LGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
|.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999987 4445 6889999999999999999999999999999999988877776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=2.9e-05 Score=69.05 Aligned_cols=65 Identities=9% Similarity=-0.047 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45578888999999999999999999999999999999999999999999999999999998874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.92 E-value=0.00069 Score=64.81 Aligned_cols=225 Identities=10% Similarity=-0.020 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchhHHHHHHHHHHHcCCCCcHHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH----LVALDQGKWIHAYIRKNGLKINSILGT 465 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (798)
|+..|..+...+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45677778778888888889988888887765 33333333333322 233444444444443333
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR--- 538 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--- 538 (798)
+...+..+...+.. .++.+.|...+++..+.|..+ ....+...+.
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCC
Confidence 12222223222222 345556666666666554221 1111211111
Q ss_pred -hcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 003746 539 -HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESMPMSPDVATWGALLGACKK----HG 609 (798)
Q Consensus 539 -~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 609 (798)
.......+...+..... ..+...+..|...|.. ..+...+...++...-..+...+..|...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 23345566666655533 2345556666666654 44666777777665323466667677666665 56
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
+++.|+..|+++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8999999999998874 46778889999876 3478999999999988775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.00011 Score=64.90 Aligned_cols=64 Identities=8% Similarity=-0.055 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.+|..+..+|.+.|++++|+..++++++++|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566788889999999999999999999999999999999999999999999999999988743
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.5e-06 Score=89.94 Aligned_cols=106 Identities=9% Similarity=-0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKK 607 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 607 (798)
+..+...+.+.|+.++|...+...... .| ...+..+++++...|++++|...|++. ...| +...|+.|+..+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 333444444444444444444433220 11 123444455555555555555555444 2223 23445555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
.|+..+|+..|.+++...|+.+.++..|+.++
T Consensus 199 ~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 55555555555555555554444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=1.1e-05 Score=69.54 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+++.|.+.|+++++++|++..++..|+.. ..|.+++....++|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999998777777544 456666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.75 E-value=0.0082 Score=56.84 Aligned_cols=228 Identities=9% Similarity=-0.038 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003746 359 DLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQ----HDQFSETLSLFMEMQHHGIRPDEATLVSVI 433 (798)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 433 (798)
|+..+..|...+.+.+++++|.+.|++..+. +..++..|...|.. ..+...|...++.....+. | .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhccc
Confidence 4667778888888999999999999988544 67777777777776 5678889988888777652 2 2222222
Q ss_pred HHH----hcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH----hcCCHHHHHHHHhhcCC-CCcchHHHHHHHHHH
Q 003746 434 SAC----THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM----KLGCVDNALEVFHGTEE-KGVSSWNALIIGFAM 504 (798)
Q Consensus 434 ~a~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 504 (798)
..+ ....+.+.+...+....+.|.... ...+...+. .......|...+..... .+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 222 224556667777777666653221 111222222 12233444444333222 223333333333332
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLK 580 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 580 (798)
.. + ...+...+..+++...+. .+......+..+|.. ..+++
T Consensus 155 ~~---------------~----------------~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR---------------G----------------TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS---------------S----------------SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC---------------C----------------cccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 10 0 123444444444444321 123333344444443 45677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCC
Q 003746 581 EAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 581 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 627 (798)
+|...|++....-++..+..|...|.. ..|.++|.+.|+++.+..+.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 777777766222355566666666654 33777888888888776544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.0068 Score=59.07 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=120.0
Q ss_pred CCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 003746 77 PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~ 156 (798)
+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+.. +..+|..+..+|........+ .
T Consensus 26 ~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-----~ 89 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-----Q 89 (336)
T ss_dssp ---CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----H
T ss_pred HCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----H
Confidence 66778888888876543 7778888888888888888776542 455777777887776655443 2
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC-------
Q 003746 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER------- 226 (798)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 226 (798)
+.......++.-...++..|-..|.+++...+++... ..+...++-++..|++.+ .++-++.++.....
T Consensus 90 i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~ 168 (336)
T d1b89a_ 90 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVL 168 (336)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHH
Confidence 2222333455556678888888888888888887543 345556778888888764 44555555443221
Q ss_pred ----CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 227 ----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 227 ----~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
....|..++-.|.+.|++++|..+.-.-+ +++......+..+.+..+.+...++.....+
T Consensus 169 ~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 169 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 22334556667777777777766553322 1333445566667777776666555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.72 E-value=7.5e-05 Score=60.87 Aligned_cols=85 Identities=8% Similarity=-0.062 Sum_probs=41.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHh
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGR 575 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 575 (798)
+...+.+.|++++|+..|++.... .|+ ...|..+..++.+.|++++|...|+++++ +.|+ ...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 344445555555555555555542 333 23444444555555555555555555543 2332 4444444444445
Q ss_pred cCCHHHHHHHHH
Q 003746 576 AGMLKEAEELIE 587 (798)
Q Consensus 576 ~g~~~~A~~~~~ 587 (798)
.|++++|.+.++
T Consensus 97 ~g~~~~A~~~l~ 108 (112)
T d1hxia_ 97 EHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 555555544444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.036 Score=53.80 Aligned_cols=274 Identities=11% Similarity=0.088 Sum_probs=161.7
Q ss_pred CCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003746 92 ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171 (798)
Q Consensus 92 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (798)
..||..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.+++..|..+.... .+..+|..
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~ 74 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 74 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHH
Confidence 34666555667778889999999999998765 3678888888999998887766543 45678888
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchHHHHHHHHHhhcCCHHHHH
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---ERNIIASNSMIVLFGRKGNVAEAC 248 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~y~~~g~~~~A~ 248 (798)
+...+........|.- .......++.....++..|-..|.+++...+++... ..+...++-++.+|++.+. ++-.
T Consensus 75 ~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHH
Confidence 8888888877765533 222233455556788999999999999999999754 3466788999999999764 3333
Q ss_pred HHHhcCCCC-----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHH
Q 003746 249 RLFKEMPKK-----------DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317 (798)
Q Consensus 249 ~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 317 (798)
+.+.....+ ....|.-++-.|.+.|++++|+.+. .+ -.++.......+..+.+..+.+...++.
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHH
Confidence 333332111 2223555555666666666555443 22 1233334444555566666766666666
Q ss_pred HHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHH
Q 003746 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWST 396 (798)
Q Consensus 318 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ 396 (798)
...++. ++...+.|+......-+..+..+.++ +.+++......++..... +....++
T Consensus 228 ~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~~l~li~p~Le~v~~~n~~~vn~a 285 (336)
T d1b89a_ 228 QFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFS------------------KVKQLPLVKPYLRSVQNHNNKSVNES 285 (336)
T ss_dssp HHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHH------------------HTTCTTTTHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHH------------------hcCCcHHHHHHHHHHHHcChHHHHHH
Confidence 655542 23344555655555555555555554 444444444555444332 4456677
Q ss_pred HHHHHHhCCChHH
Q 003746 397 MISGYAQHDQFSE 409 (798)
Q Consensus 397 li~~~~~~g~~~~ 409 (798)
+...|...++++.
T Consensus 286 l~~lyie~~d~~~ 298 (336)
T d1b89a_ 286 LNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHhCcchhHH
Confidence 7777877777544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00025 Score=63.11 Aligned_cols=115 Identities=13% Similarity=0.006 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 610 (798)
..........|++++|.+.|.+.+.-+.-.+-... ...........-++. .....|..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 33445677889999999999998763221110000 000011111111111 124578889999999999
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+++|+..++++++++|.+...|..++.+|...|++++|.+.|+.+.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=3.3e-05 Score=66.44 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=64.6
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
|.+.+.+++|...|+..++ +.| +...+..+..+|...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 3344555566666655554 234 24455555555544443333322 124467899
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCC-----------hhHHHHHHHHHHhC
Q 003746 616 RVGRKLVELQPDHDGFHVLLSNIHASKGR-----------WDDVLEVRGMMVRR 658 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~ 658 (798)
..++++++++|+++.++..++.+|...|+ +++|.+.|++..+.
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 99999999999999999999999988764 57888888887763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00021 Score=62.26 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDH-----------DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|+.+..+|...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888899999988888888654321 225678999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00022 Score=55.92 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM----P----MSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
.++..+.+.|++++|...|++. + ..++ ..+++.|..++.+.|++++|+..++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4555556666666666665544 1 1122 56788999999999999999999999999999999888777543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.0004 Score=57.94 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLL 573 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 573 (798)
..+...|...|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|.+.++++++ +.|+ ...+..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~---- 78 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQI---- 78 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHH----
Confidence 34445555555555555555555553 222 33444455555555555555555555543 1221 1111111
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
..+|..+...+...+++++|++.+++.+...|+
T Consensus 79 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 79 ---------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 124455556666667777777777777766654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=5.9e-05 Score=80.11 Aligned_cols=259 Identities=10% Similarity=-0.067 Sum_probs=136.4
Q ss_pred HHHHHHHhcC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 378 KARALFDAMI--EK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 378 ~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
+|.+.|++.. ++ ...+|..+...|...|++++| |+++... .|+...-..+...+- ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 4556666553 22 334566667777777777766 6666543 232111000100000 1123344555555554
Q ss_pred cCCCCcHH--HHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003746 455 NGLKINSI--LGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529 (798)
Q Consensus 455 ~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 529 (798)
..-.++.. ....+...+...|.++.|...+....+ .+...|..+...+.+.|+.++|...+++.... .| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence 33222222 111222233445667777777765543 34567888888899999999999888876642 22 346
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACK 606 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 606 (798)
+..+...+...|++++|..+|+++.+ +.|+ ...|+.|..+|...|+..+|...|.+. . .+|-..++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 77788889999999999999999976 5675 789999999999999999999999887 3 3467888988888776
Q ss_pred HcCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 607 KHGDHEMGERVGRKLVELQPD---HDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+..+...+. +..+. ....++.+...+...+.+++..++.+.+
T Consensus 232 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 544322111 11111 1223445555666677777766665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.25 E-value=0.00026 Score=67.31 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=77.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 581 (798)
+.|++++|+..+++.++. .|+. ..+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 467788888888887774 4544 4677777788888888888888888765 4564 4444455555544444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 582 AEELIESM--PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 582 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
+..-.... ..+|+ ...+......+...|+.++|...++++.++.|+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33322221 11232 3334444556677788888888888888888876654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0013 Score=56.85 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM--------PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
.|+.+..+|...|++++|.+.+++. ...++ ..++..+..+|...|++++|+..|++++++.|+..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 4555666666666666666665553 11222 23567788999999999999999999998866543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0011 Score=51.59 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...+..++..+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445678899999999999999999999875543 3468889999999999999999999988743
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.81 E-value=0.00031 Score=66.80 Aligned_cols=120 Identities=12% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEM 613 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 613 (798)
..+.|++++|+..+++.++ ..| +...+..++.+|+..|++++|.+.++.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 3467999999999999987 456 5899999999999999999999999988 45564 5566666655554444333
Q ss_pred HHHHHHHHH-hcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 614 GERVGRKLV-ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 614 A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.....+.. ..+|++...+...+.++...|+.++|.+.++.+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 322222111 1245555556677888999999999999999887643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.0062 Score=53.64 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=38.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
..+..++..+.+.|++++|...++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555666677777777777777666 3334 5666777777777777777777777665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.082 Score=42.06 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PDVATWGALLGACKKHG---DHEMGERVGRKLVELQPDHD-GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|...+.....+++.++. +.++|+.+++++++.+|.+. .+++.|+-+|.+.|++++|++.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444555554432 34456666666666555443 4555666666666666666666666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.59 E-value=0.75 Score=35.92 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=89.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHH
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 582 (798)
.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+.+. .++.+...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 3456666666666666542 233344444444334444444555555553333332 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 583 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
...+-.+. .+....+.-+....++|+-+.-.++++.+++-+.-+|.+..-++++|.+.|...++-+++.+.=++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444442 233345556677888899999999999988877667889999999999999999999999999998875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=3.4 Score=41.28 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGVL----GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 581 (798)
.+.+.|..++........ .+......+- ......+..+.+...+...... ..+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 456667776666554321 1222111111 1222344556666666555332 2233333344445556677777
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 582 AEELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 582 A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
+...++.++..|. ..-.-=+..++...|+.+.|...+..+-.
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777777743331 22223355667777777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.52 E-value=0.39 Score=39.04 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHH
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERV 617 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 617 (798)
++++|.++|++..+. | +......|. .....+.++|.+++++.-..-+......|...|.. ..|.++|.+.
T Consensus 8 d~~~A~~~~~kaa~~-g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-N---EMFGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHT-T---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-C---Chhhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 667788888877552 3 222222232 23456788888888876323456666666666654 4578899999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 82 ~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 82 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99988764 45677888888877 4688999999999888775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.36 Score=38.19 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 568 CMVDLLGRAG---MLKEAEELIESM-PMSP-D-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 568 ~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
....++.+.. +.++++.++++. ...| + ...|..|.-+|.+.|+++.|.+.++++++++|++..+..+
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 3444444433 344566666555 1223 3 3577788889999999999999999999999999765444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.73 E-value=1.5 Score=35.31 Aligned_cols=46 Identities=7% Similarity=-0.061 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Q 003746 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRH----MGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 507 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 555 (798)
+.++|+++|++..+.| +......|...|.+ ..+.++|.++|++..+
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 4556666666666554 22233333333333 2456667777766643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=80.27 E-value=11 Score=29.20 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=55.9
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
+|+++......+-.+. .+..-.+.-++...+.|+-+.-.++++.+.+. -+|+......+..||.+.|...++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555544443332 23334455667777888888888888886663 477777888888888888888888888888
Q ss_pred HHHhCCC
Q 003746 553 MIQEHRL 559 (798)
Q Consensus 553 ~~~~~~~ 559 (798)
+-++ |+
T Consensus 146 ACe~-G~ 151 (161)
T d1wy6a1 146 ACKK-GE 151 (161)
T ss_dssp HHHT-TC
T ss_pred HHHH-hH
Confidence 7653 44
|