Citrus Sinensis ID: 003810

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790----

MSTEENSVIVMPESGIEDSLKSEKQLSDTNGGSNGNLVMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLASTDVPPSTTPANDSSGTTLSLFSRFSFS

ccccccHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccc

cccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccEEEccc

msteensvivmpesgiedslksekqlsdtnggsngnlvmhngmrdehgssndnnEQLLGLVMELKLQNEFLKSQFEglntlrpeddgqesrevvDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDdnknlhrslelrpadnhndkdstgitasqkqdvlnsiPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMerskkregvdMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYlastdvppsttpandssgttlslfsrfsfs

msteensvivmpesgiedsLKSEKQLSDTNGGSNGNLVMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLntlrpeddgqesrevvdvkelRERIESLskelqeeketrgAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGqeikghedkytELDSKFTRLHKRAKQRiqevqkekddletRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMeaastgkeaRFKAAVETVKGELAhlkrehekekesWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAqkeessgqdvqKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLElrpadnhndkdstGITASQKQDVLNSIPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSqqeamlkeefrnmerskkregvdmtyLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLASTDVPPSttpandssgttlslfsrfsfs

MSTEENSVIVMPESGIEDSLKSEKQLSDTNGGSNGNLVMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIeslskelqeekeTRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRaleealketekeMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSaaeqqilllarqqaqreeelaqsqrHIlalqeeleelerenrlHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLASTDVPPSTTPANDssgttlslfsrfsfs

*********************************************************LGLVMELKLQNEFL********************************************************************************************************************************************************************************************************************************************************************************************************************************IAESNCIHTEI**************************LMAAKQEIIHLEREFSSYKIRAHALLQKK************************************************************************************EAWEKNLQTVEESWRLRCELL**************************************************************************************************************************************************************VDMTYLKNVILKLLETGEVEALLPVIAMLLQFSP****************************************

*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NVILKLLE**EVEALLPVIAMLLQFSPEEMQ***************************SLFSRFSFS

********IVMPESGIEDSLKSEKQLSDTNGGSNGNLVMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSK***********AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRD***********************QQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQL************TISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLK**************QAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKA**********QKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSAAEQQILLLARQ************RHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLAS***************TTLSLFSRFSFS

*****NSVIVMPESGIEDSLKSEKQLSDTNGGSNGNLVMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLA****************************

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

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		794	2.2.26 [Sep-21-2011]
Q8S2T0		788	Protein GRIP OS=Arabidops	yes	no	0.937	0.944	0.642	0.0
Q96CN9		775	GRIP and coiled-coil doma	no	no	0.301	0.308	0.280	0.0008

>sp\|Q8S2T0\|GRIP_ARATH Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2	Back alignment and function desciption

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/755 (64%), Positives = 605/755 (80%), Gaps = 11/755 (1%)

Query: 51  NDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVD-----VKELRERIES 105
            +N +QLL ++ EL+L+N+FL+SQFEGL     +    +  E V+     +K+L+E++ S
Sbjct: 34  TENGDQLLQMIAELRLENDFLRSQFEGLKDEVAQGRSLQKAEQVEADSAQLKQLQEQVAS 93

Query: 106 LSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTE 165
           LS+E+  EK+TR AAE+ALEHLR  Y EADAK+QE+S+K ++ +QKL QEIK  ++KY +
Sbjct: 94  LSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIKERDEKYAD 153

Query: 166 LDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225
           LD+KFTRLHKRAKQRIQE+QKEKDDL+ R R+V ETAERASSQ S++QQELERTRQQAN+
Sbjct: 154 LDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELERTRQQANE 213

Query: 226 ALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQA 285
           ALKAMD ERQQLRSANNKLRD IEEL  S QPKE+ +E LQ SL +KDQ+LED++  LQA
Sbjct: 214 ALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILEDLKKQLQA 273

Query: 286 AEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEA 345
            EE++Q ++ ELSAKHQKNLE LEAQ+ DA+S+R KA ETISSLQVL+AEKE+ IAEMEA
Sbjct: 274 VEERKQIAVTELSAKHQKNLEGLEAQVVDALSERDKAAETISSLQVLLAEKESKIAEMEA 333

Query: 346 ASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAA 405
           A+TG+ AR +AA ET+KGELAHLK E+EKEKE+WEA+  A + KLEIAESN +  EIE A
Sbjct: 334 AATGEAARLRAAAETLKGELAHLKSENEKEKETWEASCDALKSKLEIAESNYLQAEIEVA 393

Query: 406 KLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAAN 465
           K+RSQL SE+S+Q Q+LST+DAEL  A++EI  L+ EFSSYKIRAHALLQKKD EL AA 
Sbjct: 394 KMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELAAAK 453

Query: 466 DTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKS 525
           D+EQ+++LEEALKE EKE+ LVSAE+D+A Q+LQ ALA+ +KEL ER  AL +A++QIKS
Sbjct: 454 DSEQIKSLEEALKEAEKEVYLVSAERDRAQQDLQSALASLEKELEERAGALKDASEQIKS 513

Query: 526 IEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQY 585
           +E+KLDS   + Q EK+AWE++L+ +EE+WR RCE L AQ E S  + ++KEL+  KL+ 
Sbjct: 514 LEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNEASPAEGIEKELENAKLRN 573

Query: 586 KRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKD----STGIT 641
           KR+K+EH+S R+LADR++EEKD EISRL+D+  NL +S+E +P  N +           T
Sbjct: 574 KRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVWNKSPSQVHHYGNNNT 633

Query: 642 ASQKQDVLNSIPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQ 701
            SQ+QDV N   SAAE QIL+LARQQAQREEELAQ+QRHILALQEE+EELERENRLHSQQ
Sbjct: 634 ESQQQDVSNLSTSAAEHQILILARQQAQREEELAQTQRHILALQEEIEELERENRLHSQQ 693

Query: 702 EAMLKEEFRNMERSKKREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQ 761
           EA+LK E R MER +KREGVDMTYLKNVILKLLETGEVEALLPV+ MLLQFSPEE+QKCQ
Sbjct: 694 EAVLKTELREMERKQKREGVDMTYLKNVILKLLETGEVEALLPVVGMLLQFSPEEIQKCQ 753

Query: 762 RAYLAS--TDVPPSTTPANDSSGTTLSLFSRFSFS 794
           +AY +S         TP+  S G+ LS+FSRFSFS
Sbjct: 754 QAYHSSTTAATTTEATPSPASEGSGLSVFSRFSFS 788

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q96CN9\|GCC1_HUMAN GRIP and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=GCC1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		794
224081473		791	predicted protein [Populus trichocarpa]	0.991	0.994	0.721	0.0
359476904		798	PREDICTED: protein GRIP [Vitis vinifera]	0.993	0.988	0.727	0.0
356495327		853	PREDICTED: protein GRIP-like [Glycine ma	0.994	0.926	0.670	0.0
356540868		791	PREDICTED: protein GRIP-like [Glycine ma	0.979	0.983	0.675	0.0
297744917		737	unnamed protein product [Vitis vinifera]	0.916	0.987	0.757	0.0
255561383		779	GTP binding protein, putative [Ricinus c	0.968	0.987	0.682	0.0
449456865		798	PREDICTED: protein GRIP-like [Cucumis sa	0.991	0.986	0.679	0.0
357484067		922	Protein GRIP [Medicago truncatula] gi\|35	0.981	0.844	0.668	0.0
30698178		788	protein GRIP [Arabidopsis thaliana] gi\|2	0.937	0.944	0.642	0.0
20303029		788	Golgi-localized protein GRIP [Arabidopsi	0.937	0.944	0.639	0.0

>gi\|224081473\|ref\|XP_002306424.1\| predicted protein [Populus trichocarpa] gi\|222855873\|gb\|EEE93420.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/798 (72%), Positives = 670/798 (83%), Gaps = 11/798 (1%)

Query: 1   MSTEENSVIV-MPESGIEDS-LKSEKQLSDTNGGSNGNLVMHNGMRDEHGS-SNDNNEQL 57
           MSTEE+S +  M ES  EDS LK EKQL+  +   NGN++  NG+ D+        NEQL
Sbjct: 1   MSTEESSSVGEMLESKTEDSPLKLEKQLAG-DVHINGNVLKENGLCDDGNVLEESTNEQL 59

Query: 58  LGLVMELKLQNEFLKSQFEGLNTLR-PEDDGQESREVVDVKELRERIESLSKELQEEKET 116
           L +V+ELK QNEF KSQFEGL + +  E+ GQES E  DVKELRE+I+SL++EL EEK+T
Sbjct: 60  LLMVIELKFQNEFFKSQFEGLKSQQEAEESGQESGESADVKELREKIQSLNRELNEEKQT 119

Query: 117 RGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKR 176
           RGAAE ALEHLR +Y + DAKAQE S KLAEAQQKL +EIK  E+KYTELDSKF RLHKR
Sbjct: 120 RGAAEIALEHLREEYSDTDAKAQELSLKLAEAQQKLDREIKDREEKYTELDSKFQRLHKR 179

Query: 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQ 236
           AKQRIQEVQKEKDDLE R RD  E A++ASS+ S+L+QEL RTRQQAN+ALKAMD ERQQ
Sbjct: 180 AKQRIQEVQKEKDDLEARFRDANEGAKQASSEQSSLKQELARTRQQANEALKAMDAERQQ 239

Query: 237 LRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAE 296
           LRSANNKLRDNIEEL  S QPKE ALEALQ +L EK+QMLEDMR +LQ+AEEK+ AS+ E
Sbjct: 240 LRSANNKLRDNIEELRCSLQPKESALEALQQTLLEKEQMLEDMRGMLQSAEEKKHASMTE 299

Query: 297 LSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKA 356
           LSAKHQK++E+LE Q+ADA++DR+KA ETIS LQVLVAEKE+ IAEM+AAS+G+ AR +A
Sbjct: 300 LSAKHQKSIENLEGQIADALTDRNKAAETISKLQVLVAEKESKIAEMDAASSGETARLRA 359

Query: 357 AVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELS 416
           A+E+VKGELAH K EHEKEKESWEAASQA + KLEIAE N I  EIEA K++SQLE E+S
Sbjct: 360 ALESVKGELAHQKHEHEKEKESWEAASQALKTKLEIAERNYIRAEIEATKMKSQLELEVS 419

Query: 417 VQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEA 476
           VQ+Q+LS +DAEL+A K+EI  LE EFSSYK+RAH LLQKKDAEL AA D+EQL+A+EEA
Sbjct: 420 VQSQMLSKKDAELLAVKEEINRLESEFSSYKVRAHTLLQKKDAELAAAMDSEQLKAIEEA 479

Query: 477 LKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTK 536
           LKE E E+SL S E+DKALQ+LQEALANHDKELA RDAAL++A QQIKS+E KLDS N  
Sbjct: 480 LKEAETEVSLASVERDKALQDLQEALANHDKELATRDAALSSAMQQIKSLETKLDSANVH 539

Query: 537 LQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFR 596
           LQ EKE W+ NLQ +EESWRLRCE LKA+KE  SGQD+Q+EL+EL+LQYK+LK+EHDSFR
Sbjct: 540 LQSEKETWKINLQNLEESWRLRCEALKAEKEVPSGQDIQRELEELELQYKKLKEEHDSFR 599

Query: 597 DLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSAA 656
           +LADRMMEEKD EIS+L+D N+NLH+S+E RP  +H+D DS  ITA  KQD  N   S A
Sbjct: 600 ELADRMMEEKDKEISKLVDSNRNLHQSMESRPRVDHSD-DS--ITAMHKQDGANLSTSIA 656

Query: 657 EQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSK 716
           EQQILLLARQQAQREEELAQSQRHILALQEE+EELERENRLHSQQEAMLK E RNMER++
Sbjct: 657 EQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQEAMLKTELRNMERTQ 716

Query: 717 KREGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLASTDVPPSTTP 776
           KR+GVD+TYLKNVILKLLETGEVEALLPV+AMLLQFSPEE+QKCQ AY ASTDVPPS  P
Sbjct: 717 KRDGVDLTYLKNVILKLLETGEVEALLPVVAMLLQFSPEEVQKCQ-AYRASTDVPPS--P 773

Query: 777 ANDSSGTTLSLFSRFSFS 794
           A+D+ G+ LSLFSRFSFS
Sbjct: 774 ASDTPGSGLSLFSRFSFS 791

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359476904\|ref\|XP_002263406.2\| PREDICTED: protein GRIP [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495327\|ref\|XP_003516530.1\| PREDICTED: protein GRIP-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540868\|ref\|XP_003538906.1\| PREDICTED: protein GRIP-like [Glycine max]	Back alignment and taxonomy information

>gi\|297744917\|emb\|CBI38414.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255561383\|ref\|XP_002521702.1\| GTP binding protein, putative [Ricinus communis] gi\|223539093\|gb\|EEF40689.1\| GTP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449456865\|ref\|XP_004146169.1\| PREDICTED: protein GRIP-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357484067\|ref\|XP_003612320.1\| Protein GRIP [Medicago truncatula] gi\|355513655\|gb\|AES95278.1\| Protein GRIP [Medicago truncatula]	Back alignment and taxonomy information

>gi\|30698178\|ref\|NP_851277.1\| protein GRIP [Arabidopsis thaliana] gi\|205785634\|sp\|Q8S2T0.2\|GRIP_ARATH RecName: Full=Protein GRIP; Short=AtGRIP gi\|332010760\|gb\|AED98143.1\| protein GRIP [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|20303029\|gb\|AAM18966.1\|AF499634_1 Golgi-localized protein GRIP [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		794
TAIR\|locus:2156922		788	ATGRIP [Arabidopsis thaliana (	0.950	0.958	0.559	1.5e-211
DICTYBASE\|DDB_G0286985		1024	zipA "zipper-like domain-conta	0.648	0.502	0.213	8.7e-23
UNIPROTKB\|F1S2Y5		2576	CENPF "Uncharacterized protein	0.726	0.223	0.224	4.5e-22
UNIPROTKB\|F1P9F8		1681	GCC2 "Uncharacterized protein"	0.648	0.306	0.218	5.5e-22
MGI\|MGI:1917547		1679	Gcc2 "GRIP and coiled-coil dom	0.678	0.321	0.205	7.1e-22
UNIPROTKB\|F1SU27		1646	GCC2 "Uncharacterized protein"	0.661	0.318	0.221	8.8e-22
UNIPROTKB\|F1N1F8		3077	CENPF "Uncharacterized protein	0.680	0.175	0.216	3.3e-21
UNIPROTKB\|Q8IWJ2		1684	GCC2 "GRIP and coiled-coil dom	0.651	0.307	0.219	5.3e-21
UNIPROTKB\|E1BB16		1684	GCC2 "Uncharacterized protein"	0.686	0.323	0.209	1.4e-20
RGD\|1305732		1679	Gcc2 "GRIP and coiled-coil dom	0.712	0.337	0.200	1.8e-20

TAIR\|locus:2156922 ATGRIP [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2045 (724.9 bits), Expect = 1.5e-211, P = 1.5e-211
 Identities = 431/771 (55%), Positives = 550/771 (71%)

Query:    22 SEKQLSDTNGGSNGNLVMHNGMRDEHGSSND----NNEQLLGLVMELKLQNEFLKSQFEG 77
             SE + SD  G    + V+    ++ + +SN+    N +QLL ++ EL+L+N+FL+SQFEG
Sbjct:     2 SEDKESDVVGEEEESHVIKED-KELNDASNETLTENGDQLLQMIAELRLENDFLRSQFEG 60

Query:    78 LNTLRPEDDGQESREVVD-----VKELRERIXXXXXXXXXXXXTRGAAEKALEHLRVQYE 132
             L     +    +  E V+     +K+L+E++            TR AAE+ALEHLR  Y 
Sbjct:    61 LKDEVAQGRSLQKAEQVEADSAQLKQLQEQVASLSREIDVEKQTRVAAEQALEHLREAYS 120

Query:   133 EADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLE 192
             EADAK+QE+S+K ++ +QKL QEIK  ++KY +LD+KFTRLHKRAKQRIQE+QKEKDDL+
Sbjct:   121 EADAKSQEYSSKFSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLD 180

Query:   193 TRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELC 252
              R R+V ETAERASSQ S++QQELERTRQQAN+ALKAMD ERQQLRSANNKLRD IEEL 
Sbjct:   181 ARFREVNETAERASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDTIEELR 240

Query:   253 RSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQL 312
              S QPKE+ +E LQ SL +KDQ+LED++  LQA EE++Q ++ ELSAKHQKNLE LEAQ+
Sbjct:   241 GSLQPKENKIETLQQSLLDKDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLEGLEAQV 300

Query:   313 ADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREH 372
              DA+S+R KA ETISSLQVL+AEKE+ IAEMEAA+TG+ AR +AA ET+KGELAHLK E+
Sbjct:   301 VDALSERDKAAETISSLQVLLAEKESKIAEMEAAATGEAARLRAAAETLKGELAHLKSEN 360

Query:   373 EKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAA 432
             EKEKE+WEA+  A + KLEIAESN +  EIE AK+RSQL SE+S+Q Q+LST+DAEL  A
Sbjct:   361 EKEKETWEASCDALKSKLEIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELKGA 420

Query:   433 KQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRXXXXXXXXXXXXMSLVSAEKD 492
             ++EI  L+ EFSSYKIRAHALLQKKD EL AA D+EQ++            + LVSAE+D
Sbjct:   421 REEINRLQSEFSSYKIRAHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEVYLVSAERD 480

Query:   493 KALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVE 552
             +A Q+LQ ALA+ +KEL ER  AL +A++QIKS+E+KLDS   + Q EK+AWE++L+ +E
Sbjct:   481 RAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLE 540

Query:   553 ESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISR 612
             E+WR RCE L AQ E S  + ++KEL+  KL+ KR+K+EH+S R+LADR++EEKD EISR
Sbjct:   541 ETWRRRCEALTAQNEASPAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISR 600

Query:   613 LLDDNKNLHRSLELRPADNHNDKD----STGITASQKQDVLNSIPSXXXXXXXXXXXXXX 668
             L+D+  NL +S+E +P  N +           T SQ+QDV N   S              
Sbjct:   601 LVDEMTNLRKSMESKPVWNKSPSQVHHYGNNNTESQQQDVSNLSTSAAEHQILILARQQA 660

Query:   669 XXXXXXXXXXXHIXXXXXXXXXXXXXXXXHSQQEAMLKEEFRNMERSKKREGVDMTYLKN 728
                        HI                HSQQEA+LK E R MER +KREGVDMTYLKN
Sbjct:   661 QREEELAQTQRHILALQEEIEELERENRLHSQQEAVLKTELREMERKQKREGVDMTYLKN 720

Query:   729 VILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLASTDVPPST--TPA 777
             VILKLLETGEVEALLPV+ MLLQFSPEE+QKCQ+AY +ST    +T  TP+
Sbjct:   721 VILKLLETGEVEALLPVVGMLLQFSPEEIQKCQQAYHSSTTAATTTEATPS 771

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0048193 "Golgi vesicle transport" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S2Y5 CENPF "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P9F8 GCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1917547 Gcc2 "GRIP and coiled-coil domain containing 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SU27 GCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IWJ2 GCC2 "GRIP and coiled-coil domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BB16 GCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1305732 Gcc2 "GRIP and coiled-coil domain containing 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S2T0	GRIP_ARATH	No assigned EC number	0.6423	0.9370	0.9441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V0393	hypothetical protein (791 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		794
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-14
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-13
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
pfam01465		45	pfam01465, GRIP, GRIP domain	3e-11
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-10
smart00755		46	smart00755, Grip, golgin-97, RanBP2alpha,Imh1p and	8e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	8e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-05
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	7e-05
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	8e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR03007		498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	2e-04
pfam13166		713	pfam13166, AAA_13, AAA domain	2e-04
TIGR03185		650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	2e-04
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-04
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.002
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.002
COG2433		652	COG2433, COG2433, Uncharacterized conserved protei	0.002
PRK11448		1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.002
pfam13514		1118	pfam13514, AAA_27, AAA domain	0.002
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.004
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.004
COG3264		835	COG3264, COG3264, Small-conductance mechanosensiti	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score = 77.4 bits (191), Expect = 2e-14
 Identities = 68/277 (24%), Positives = 119/277 (42%), Gaps = 9/277 (3%)

Query: 63  ELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEK 122
           EL+ + E L+ + E L     E   Q S    D+  L   +E L + + +  +     E 
Sbjct: 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761

Query: 123 ALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQ---EIKGHEDKYTELDSKFTRLHKRA-- 177
            +E L  + EEA+ +  E  A++ E + ++ Q   E+K   +   EL ++ T L++ A  
Sbjct: 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

Query: 178 -KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN---DALKAMDIE 233
            ++R++ +++     E RL D+ E  E  S    +L  E+E   +        L+A+  E
Sbjct: 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881

Query: 234 RQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQAS 293
           R  L  A   LR  +EEL    +  E     L+  L+E  + L  +   L+  E +    
Sbjct: 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941

Query: 294 IAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQ 330
              LS ++   LE  EA       D  +A   +  L+
Sbjct: 942 QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|216516 pfam01465, GRIP, GRIP domain	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|197860 smart00755, Grip, golgin-97, RanBP2alpha,Imh1p and p230/golgin-245	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		794
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.96
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.93
smart00755		46	Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-	99.4
PF01465		46	GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g	99.4
PRK02224		880	chromosome segregation protein; Provisional	99.39
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.33
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.29
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.27
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.23
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.21
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.04
PRK03918		880	chromosome segregation protein; Provisional	99.03
PRK03918		880	chromosome segregation protein; Provisional	98.98
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.98
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.92
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.81
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.74
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.64
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.64
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.59
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.58
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.54
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.46
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.41
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.34
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.32
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.21
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.17
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.15
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.11
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	98.1
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.04
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.84
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.83
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.77
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.76
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.7
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.7
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.65
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.6
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.54
KOG0963		629	consensus Transcription factor/CCAAT displacement	97.52
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.49
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.44
PRK01156		895	chromosome segregation protein; Provisional	97.44
PHA02562		562	46 endonuclease subunit; Provisional	97.44
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.36
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.34
PRK11637		428	AmiB activator; Provisional	97.25
PRK11637		428	AmiB activator; Provisional	97.24
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.2
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.18
PRK04778		569	septation ring formation regulator EzrA; Provision	97.17
PRK01156		895	chromosome segregation protein; Provisional	97.12
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.07
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.06
PHA02562		562	46 endonuclease subunit; Provisional	97.05
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.05
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.01
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.0
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.96
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.9
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.89
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	96.85
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.81
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.75
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	96.7
PRK04863		1486	mukB cell division protein MukB; Provisional	96.66
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.51
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.33
KOG0963		629	consensus Transcription factor/CCAAT displacement	96.22
PRK09039		343	hypothetical protein; Validated	96.19
PRK04863		1486	mukB cell division protein MukB; Provisional	96.17
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	96.15
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.15
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	96.14
PRK09039		343	hypothetical protein; Validated	96.12
PF14662		193	CCDC155: Coiled-coil region of CCDC155	96.01
KOG0933		1174	consensus Structural maintenance of chromosome pro	95.87
PF13514		1111	AAA_27: AAA domain	95.78
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.76
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.74
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	95.69
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.53
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.42
PRK10698		222	phage shock protein PspA; Provisional	95.26
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.26
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	95.05
TIGR02977		219	phageshock_pspA phage shock protein A. Members of	94.98
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	94.81
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.74
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	94.7
PF14662		193	CCDC155: Coiled-coil region of CCDC155	94.32
COG4942		420	Membrane-bound metallopeptidase [Cell division and	94.12
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.99
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	93.93
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	93.89
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	93.53
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.51
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.41
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.24
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.08
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	92.89
COG4942		420	Membrane-bound metallopeptidase [Cell division and	92.75
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	92.75
PF09304		107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.75
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	92.67
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	92.06
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	91.87
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.73
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.67
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.44
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.38
KOG0933		1174	consensus Structural maintenance of chromosome pro	91.32
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	91.24
COG1842		225	PspA Phage shock protein A (IM30), suppresses sigm	90.93
KOG0249		916	consensus LAR-interacting protein and related prot	90.82
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.79
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.65
PF13514		1111	AAA_27: AAA domain	90.61
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	90.6
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	90.48
KOG0964		1200	consensus Structural maintenance of chromosome pro	90.45
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	90.33
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	90.07
KOG1003		205	consensus Actin filament-coating protein tropomyos	89.23
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	89.09
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	88.96
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	88.96
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.67
PF09304		107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.55
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	88.35
PRK11281		1113	hypothetical protein; Provisional	88.07
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.97
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	87.7
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.19
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.8
PRK04778		569	septation ring formation regulator EzrA; Provision	86.75
COG5185		622	HEC1 Protein involved in chromosome segregation, i	86.7
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	86.44
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.4
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	86.13
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.91
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.73
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.48
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	85.42
COG4372		499	Uncharacterized protein conserved in bacteria with	85.19
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	84.73
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	84.71
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	84.45
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.14
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	84.06
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	83.57
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.95
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	82.91
KOG0979		1072	consensus Structural maintenance of chromosome pro	82.87
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.69
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.35
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	82.26
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	82.26
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.98
KOG4673		961	consensus Transcription factor TMF, TATA element m	81.81
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	81.76
KOG1003		205	consensus Actin filament-coating protein tropomyos	81.45
PRK10698		222	phage shock protein PspA; Provisional	80.79
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	80.74
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	80.17
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.1

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=6.1e-32  Score=337.33  Aligned_cols=469  Identities=23%  Similarity=0.359  Sum_probs=442.8

Q ss_pred             hhhHHHHHHHHHHhhhh---hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh
Q 003810           93 VVDVKELRERIESLSKE---LQEEKETRGA----AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTE  165 (794)
Q Consensus        93 ~~~v~el~eq~e~l~r~---~ek~k~~l~~----~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~e  165 (794)
                      +++|++|..|++++++.   ++++|+.++.    +..++.++...+.+.+++++.++.++.+++.++++.    .+.+.+
T Consensus      1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~----~~~~~~ 1263 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ----ERLRND 1263 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            88999999999999998   9999999999    999999999999999999999999999999999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003810          166 LDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLR  245 (794)
Q Consensus       166 l~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~  245 (794)
                      +..+.+++           ..|...+..++++.+..++.+++..+++.++|++++.+++++++    .+..+...+++++
T Consensus      1264 l~~q~~~l-----------~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r----~k~~l~~~l~~l~ 1328 (1930)
T KOG0161|consen 1264 LTAKRSRL-----------QNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETR----EKSALENALRQLE 1328 (1930)
T ss_pred             HHHHHHHh-----------hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            99999999           99999999999999999999999999999999999999999999    7899999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810          246 DNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATET  325 (794)
Q Consensus       246 ~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~  325 (794)
                      .+++.|++++++..+....|.+.+.++..++.+|+.+++.....+.+.+.+.|++++..++.++..+..++..+..+.++
T Consensus      1329 ~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~ 1408 (1930)
T KOG0161|consen 1329 HELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKA 1408 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987767788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 003810          326 ISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAASQAFRKKLEIAESNCIHTEI  402 (794)
Q Consensus       326 ~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~~~el~~eLe~aE~~~~r~e~  402 (794)
                      +.+|+.+++                  ++..++++.+.-++.+.+++..|   +++|+..++.+..+++.++.+.+.+++
T Consensus      1409 k~~l~~el~------------------d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~t 1470 (1930)
T KOG0161|consen 1409 KNRLQQELE------------------DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLST 1470 (1930)
T ss_pred             HHHHHhHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999                  88889999988888888888888   999999999999999999999999999


Q ss_pred             HHHHHHhHHHh------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHH
Q 003810          403 EAAKLRSQLES------ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEA  476 (794)
Q Consensus       403 e~~~lk~e~E~------el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~  476 (794)
                      +++.++..++.      .+.+.++.++.++.+++.+..++++.          +|.|.+.++     +.+. ++.+|..+
T Consensus      1471 el~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~----------v~elek~~r-----~le~-e~~elQ~a 1534 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKR----------VHELEKEKR-----RLEQ-EKEELQAA 1534 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-----HHHH-HHHHHHHH
Confidence            99999999977      77888888888888898888888888          999999888     6676 88899999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Q 003810          477 LKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNAN----QQIKSIEIKLDSMN---TKLQVEKEAWEKNLQ  549 (794)
Q Consensus       477 l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r----~qir~lE~~l~~~~---~~~~~~kk~~e~~L~  549 (794)
                      +.|+++.++++.....+++.+++++..+++++|+.+..++++.+    ..|++++..+++..   +.+.+.|++++++++
T Consensus      1535 LeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~ 1614 (1930)
T KOG0161|consen 1535 LEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDIN 1614 (1930)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchH
Confidence            99999999999999999999999999999999999999999998    56888888888776   778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 003810          550 TVEESWRLRCELLKAQKEES--SGQDVQKELQELKLQYKRLKDEHDSFRDLADRMM---EEKDNEISRLLDDNKNLHRSL  624 (794)
Q Consensus       550 ~le~~~r~~~e~le~~~e~a--a~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l---~eke~el~kL~~e~~~l~~~L  624 (794)
                      +++           .++++|  ..++++|+++.++.++++|+.+.++.+....++.   ...++++..|++++..|+..+
T Consensus      1615 elE-----------~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1615 ELE-----------IQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred             HHH-----------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988           888888  7899999999999999999999999988888777   899999999999999999887


Q ss_pred             C
Q 003810          625 E  625 (794)
Q Consensus       625 ~  625 (794)
                      .
T Consensus      1684 ~ 1684 (1930)
T KOG0161|consen 1684 E 1684 (1930)
T ss_pred             H
Confidence            5

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245	Back alignment and domain information

>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK10698 phage shock protein PspA; Provisional	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>TIGR02977 phageshock_pspA phage shock protein A	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PRK10698 phage shock protein PspA; Provisional	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		794
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-21
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-07
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-06
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-04
3ghg_C		411	Fibrinogen gamma chain; triple-stranded coiled coi	1e-04
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 98.8 bits (246), Expect = 3e-21
 Identities = 68/359 (18%), Positives = 148/359 (41%), Gaps = 27/359 (7%)

Query: 142  SAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGET 201
              +  E  Q   +E++  +++  + +++   L ++  Q  +E    ++ L+       E 
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE- 910

Query: 202  AERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDA 261
            AE    + +A +QELE    +    ++  +   QQL++   K++  + +L    + +E A
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 262  LEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSK 321
             + LQL     D  ++ M   +   E++          K  K  + LE +++D  ++ ++
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQN--------NKLTKERKLLEERVSDLTTNLAE 1022

Query: 322  ATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEA 381
              E   +L  L  + E+ I+E+E              E  + EL  +KR+ E E      
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRL--------KKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 382  ASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLER 441
                 + ++   ++     E E     ++LE E S +N  L     ++   +  I  L+ 
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK----KIRELESHISDLQE 1130

Query: 442  EFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQE 500
            +  S K  A    +K+  +L     +E+L AL+  L++T    +     +    ++  +
Sbjct: 1131 DLESEK-AARNKAEKQKRDL-----SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		794
1upt_B		60	Golgi autoantigen, golgin subfamily A member 4; hy	99.11
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.73
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.34
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.28
3bbp_D		71	GRIP and coiled-coil domain-containing protein 2;	97.46
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.73
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	96.35
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.3
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.28
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	96.22
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.88
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.83
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	95.81
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	95.81
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.61
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	95.21
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.88
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	94.68
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.33
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	92.87
3swk_A		86	Vimentin; cytoskeleton, intermediate filament, alp	92.05
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	92.03
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.28
3bas_A		89	Myosin heavy chain, striated muscle/general contro	90.95
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	89.08
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	88.37
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.21
3s84_A		273	Apolipoprotein A-IV; four helix bundle, transport	87.9
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	87.87
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	87.33
1x79_B		112	RAB GTPase binding effector protein 1; rabaptin5,	87.22
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.97
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	86.84
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	86.47
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	85.4
3swk_A		86	Vimentin; cytoskeleton, intermediate filament, alp	85.05
3s4r_A		93	Vimentin; alpha-helix, cytoskeleton, intermediate	85.0
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	84.96
2a01_A		243	Apolipoprotein A-I; four-helix bundle, lipid trans	84.92
1x79_B		112	RAB GTPase binding effector protein 1; rabaptin5,	83.83
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	83.61
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	83.34
2e7s_A		135	RAB guanine nucleotide exchange factor SEC2; coile	82.76

>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*	Back alignment and structure

Probab=99.11  E-value=3.8e-11  Score=97.76  Aligned_cols=47  Identities=23%  Similarity=0.409  Sum_probs=43.4

Q ss_pred             cCCchhHHHHHHHHhhhcCccccchHHHHHhhCCCHHHHHHHHHHHh
Q 003810          719 EGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYL  765 (794)
Q Consensus       719 e~~n~eYLKNV~l~fl~~~e~~~llpvi~tlL~fsp~e~~~~~~a~~  765 (794)
                      +++|+|||||||++||.++++.+|+.||+++|+|||++.+.+.+.-.
T Consensus         3 ~~an~EYLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~il~~e~   49 (60)
T 1upt_B            3 EPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILERED   49 (60)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999987543

PyMOL of 1upt

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}	Back alignment and structure

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*	Back alignment and structure

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		794
d1uptb_		58	Golgi autoantigen, golgin-245 {Human (Homo sapiens	98.3

>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: GRIP domain
superfamily: GRIP domain
family: GRIP domain
domain: Golgi autoantigen, golgin-245
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-07  Score=72.69  Aligned_cols=43  Identities=23%  Similarity=0.483  Sum_probs=40.1

Q ss_pred             CchhHHHHHHHHhhhcCccccchHHHHHhhCCCHHHHHHHHHH
Q 003810          721 VDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRA  763 (794)
Q Consensus       721 ~n~eYLKNV~l~fl~~~e~~~llpvi~tlL~fsp~e~~~~~~a  763 (794)
                      +.++|||||++.||.+++...|..||++|++|+|+..+++.+.
T Consensus         3 tE~EYLRnvLfeYMmG~E~~tlaKVi~av~kF~~~Q~q~iL~k   45 (58)
T d1uptb_           3 TEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILER   45 (58)
T ss_dssp             HHHHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcchhHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998875

PyMOL of d1uptb_