Citrus Sinensis ID: 003812
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| 224118294 | 821 | predicted protein [Populus trichocarpa] | 0.989 | 0.956 | 0.645 | 0.0 | |
| 224135139 | 824 | predicted protein [Populus trichocarpa] | 0.989 | 0.952 | 0.636 | 0.0 | |
| 359490807 | 818 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.958 | 0.640 | 0.0 | |
| 255551217 | 771 | conserved hypothetical protein [Ricinus | 0.949 | 0.976 | 0.616 | 0.0 | |
| 356518641 | 801 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.970 | 0.570 | 0.0 | |
| 356507578 | 781 | PREDICTED: uncharacterized protein LOC10 | 0.943 | 0.957 | 0.583 | 0.0 | |
| 307135880 | 817 | hypothetical protein [Cucumis melo subsp | 0.987 | 0.958 | 0.555 | 0.0 | |
| 449511046 | 818 | PREDICTED: uncharacterized LOC101206875 | 0.983 | 0.953 | 0.556 | 0.0 | |
| 357463965 | 797 | hypothetical protein MTR_3g091650 [Medic | 0.965 | 0.961 | 0.566 | 0.0 | |
| 449457065 | 808 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.941 | 0.534 | 0.0 |
| >gi|224118294|ref|XP_002317783.1| predicted protein [Populus trichocarpa] gi|222858456|gb|EEE96003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/812 (64%), Positives = 638/812 (78%), Gaps = 27/812 (3%)
Query: 8 LITSEEKSDSLYPMYFGVSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRV 67
L+ SE KSDS YPMYFGVSCAF AL++L+ + +DD+WSEL DKML+GSAQLLGLLVW++
Sbjct: 11 LMVSEGKSDSFYPMYFGVSCAFLALKVLTRPDKEDDRWSELCDKMLQGSAQLLGLLVWKI 70
Query: 68 QRDGANGEKCKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQ 127
QR GANG+ C+L KL+ A++EI ELKK+R EDAKANEKVV I+A+QEQ+W ERK+LRQ
Sbjct: 71 QRGGANGQ-CELLHKLETAKKEIMELKKIRCEDAKANEKVVSIYASQEQNWLIERKKLRQ 129
Query: 128 QIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEK 187
IGAL+NELR L+KK +E+ISELNEKL +MELLV+SKD+ +EE+E KRKELEEK++ EK
Sbjct: 130 HIGALMNELRFLEKKNEEAISELNEKLNEMELLVQSKDKAVEEEEYKRKELEEKLAKTEK 189
Query: 188 IAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLE 247
IAEELRE AK+EAQEHS ++ KHKTAF+ELVSN RQLEAE+GRA RQ+EA+++ELD VLE
Sbjct: 190 IAEELRETAKREAQEHSTDLWKHKTAFLELVSNHRQLEAEMGRALRQLEAKRQELDSVLE 249
Query: 248 QKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQ 307
QKEESV QKLS+E+VKMRKDL+QKDKILSAMLRKSK DT EK++LLKEVK+SKAKR+Q
Sbjct: 250 QKEESVLLTQKLSMEVVKMRKDLEQKDKILSAMLRKSKMDTTEKELLLKEVKLSKAKRKQ 309
Query: 308 AELETERWKAASQSRHERHSLRSMFVSQANSR-------LAASSGAKGKTRS-SATVECE 359
AELE ERWK+ S+S+HERHSLRSMF AN R AS G+++S +E E
Sbjct: 310 AELERERWKSVSESKHERHSLRSMFSHHANLRSDDPPIETGASQAVNGRSQSIDYDIEYE 369
Query: 360 HIELKKDSDVFSPLSDYYSAEGNEE---QADGKRLEGWVRLEAEKYAAVIEKRHHLELEA 416
+ E +K+S+ FSPLS+ YS GN+E AD KRLEGWVR EA+KYAA IEK+HHLE+ A
Sbjct: 370 NPEFQKNSEAFSPLSNLYSPGGNDELAITADVKRLEGWVRSEAQKYAAAIEKKHHLEIGA 429
Query: 417 FAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEE 476
FAEQMR+KDEKLE +RWR LSMEIESKRLQSH+EGLN + SQ+RH++MKLEALL ER+EE
Sbjct: 430 FAEQMRLKDEKLEAFRWRTLSMEIESKRLQSHIEGLNRDVSQIRHESMKLEALLLERQEE 489
Query: 477 LHSLKEQFISQLKSFSCQNNILTSSLHDPALTHDAIWSKDKSVKRRPKEKEKETETSSVE 536
+ LK Q Q+K CQ L+SSL DPA+ HDAI S K+V + P E ++ T+ +E
Sbjct: 490 ITELKRQLKVQVKPQFCQKANLSSSLEDPAVAHDAICSNAKNVMKEPTENDQGTKVHQME 549
Query: 537 MAQGKGIDIEEKTPSS--KESKN-VKLVQSPEK----ENDASVDSPIQEEKMSLVEVDTV 589
++ + EE + KN VK VQSPEK E D + QEE S V VDTV
Sbjct: 550 TSREMDPEKEEDDEEGLHNQFKNVVKTVQSPEKEFEEEKDVASHGGTQEESASPVVVDTV 609
Query: 590 EKVASSSQSPSNTNNSPWRMDLHALGVSYKLKRLKQQLLMLERFTGK--SGEDTESNDD- 646
EK+A +SQS TNNSPWRMDLHALGVSYK+KRLKQQLLMLER GK SGE ++D+
Sbjct: 610 EKLALTSQSSMKTNNSPWRMDLHALGVSYKIKRLKQQLLMLERLAGKQDSGEHIGNSDEA 669
Query: 647 --GIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGPEISPEDS--STAKRRGDTKT 702
GIKG L+SLLNKQV RYQSLQGK D++CKR+H+ ++S DS STA+++ +TKT
Sbjct: 670 KTGIKGFKLLMSLLNKQVNRYQSLQGKTDELCKRMHDNDVDMSRGDSNTSTARKKEETKT 729
Query: 703 LEHFLEETFQLQRYIVSTGQKLMEVQSKIASGFVEFTEELDKFA-CFDKKRFADSLTTLF 761
LEHFLEETFQ+QRY+V+TGQKLMEV+SKIASGFVE EEL+K A FD KRFA+++ LF
Sbjct: 730 LEHFLEETFQVQRYMVATGQKLMEVRSKIASGFVEVPEELEKSAGSFDIKRFAENIKILF 789
Query: 762 QEVQRGLEVRIARIIGDLGGTLACEGIIHLRR 793
QEVQRGLEVRI+RIIGDL GTLACEG+I +RR
Sbjct: 790 QEVQRGLEVRISRIIGDLEGTLACEGMIRMRR 821
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135139|ref|XP_002321993.1| predicted protein [Populus trichocarpa] gi|222868989|gb|EEF06120.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359490807|ref|XP_002272450.2| PREDICTED: uncharacterized protein LOC100255603 [Vitis vinifera] gi|302143912|emb|CBI23017.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255551217|ref|XP_002516655.1| conserved hypothetical protein [Ricinus communis] gi|223544150|gb|EEF45674.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356518641|ref|XP_003527987.1| PREDICTED: uncharacterized protein LOC100815082 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356507578|ref|XP_003522541.1| PREDICTED: uncharacterized protein LOC100807704 [Glycine max] | Back alignment and taxonomy information |
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| >gi|307135880|gb|ADN33746.1| hypothetical protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|449511046|ref|XP_004163848.1| PREDICTED: uncharacterized LOC101206875 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357463965|ref|XP_003602264.1| hypothetical protein MTR_3g091650 [Medicago truncatula] gi|355491312|gb|AES72515.1| hypothetical protein MTR_3g091650 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449457065|ref|XP_004146269.1| PREDICTED: uncharacterized protein LOC101206875 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| TAIR|locus:2077207 | 389 | AT3G45900 "AT3G45900" [Arabido | 0.156 | 0.318 | 0.378 | 5.4e-19 | |
| UNIPROTKB|E1C357 | 1938 | E1C357 "Uncharacterized protei | 0.422 | 0.172 | 0.229 | 6.8e-10 | |
| ZFIN|ZDB-GENE-100712-2 | 1359 | rock1 "Rho-associated, coiled- | 0.472 | 0.275 | 0.206 | 3e-08 | |
| ZFIN|ZDB-GENE-050208-317 | 1422 | tnks1bp1 "tankyrase 1 binding | 0.469 | 0.261 | 0.209 | 3.4e-08 | |
| ZFIN|ZDB-GENE-000322-5 | 1938 | myhz1.1 "myosin, heavy polypep | 0.470 | 0.192 | 0.191 | 5.6e-08 | |
| ZFIN|ZDB-GENE-070705-73 | 1937 | myhz1.2 "myosin, heavy polypep | 0.470 | 0.192 | 0.191 | 9e-08 | |
| DICTYBASE|DDB_G0269086 | 937 | DDB_G0269086 "alpha/beta hydro | 0.447 | 0.378 | 0.233 | 9.8e-08 | |
| UNIPROTKB|F1PWZ2 | 1941 | MYH7B "Uncharacterized protein | 0.489 | 0.199 | 0.241 | 1.2e-07 | |
| UNIPROTKB|F1NPC4 | 405 | LOC429272 "Uncharacterized pro | 0.308 | 0.604 | 0.248 | 1.2e-07 | |
| ZFIN|ZDB-GENE-030131-5336 | 1936 | wu:fd14a01 "wu:fd14a01" [Danio | 0.474 | 0.194 | 0.185 | 1.4e-07 |
| TAIR|locus:2077207 AT3G45900 "AT3G45900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 188 (71.2 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 50/132 (37%), Positives = 73/132 (55%)
Query: 661 QVGRYQSLQGKIDDICKRLHETGPEISPEDSSTAKRRGDTKTLEHFLEETFQLQRYIVST 720
Q RYQ+L GKIDD+C+R+ + P +T T+ FL E F+LQ+ T
Sbjct: 255 QAKRYQALSGKIDDLCRRMQSSDP-----CDATLGPEFRTQRQNEFLLECFRLQQRASET 309
Query: 721 GQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLEVRIARIIGDLG 780
GQKL+ +Q++I ++L + A + R D + +EVQR LE+ +ARIIGDL
Sbjct: 310 GQKLVSLQTEITRS--NQGDQLSQ-AKMNTGRSLDLIKNNLKEVQRNLEIWLARIIGDLE 366
Query: 781 GTLACEGIIHLR 792
G LA +G +R
Sbjct: 367 GILARDGASRVR 378
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| UNIPROTKB|E1C357 E1C357 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-100712-2 rock1 "Rho-associated, coiled-coil containing protein kinase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-000322-5 myhz1.1 "myosin, heavy polypeptide 1.1, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-73 myhz1.2 "myosin, heavy polypeptide 1.2, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0269086 DDB_G0269086 "alpha/beta hydrolase fold-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PWZ2 MYH7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NPC4 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_XII000217 | hypothetical protein (821 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 793 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-07 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 9e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 4e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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Score = 67.8 bits (166), Expect = 2e-11
Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 12/245 (4%)
Query: 78 KLSQKLDAAEREIEELKKLRHE---DAKANEKVVGIFAAQEQSWFSERKQLRQQIGALIN 134
+L ++L+ AE+EIEELK E + + ++ + + + E LR+++ L N
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316
Query: 135 ELRIL---DKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEE 191
EL L ++ E I L E+L++ E L+ +++L E E+ ++ELEEK+S + EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 192 LRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEE 251
L E ++E E E+ + + EL LE L R ++E KEEL + + EE
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436
Query: 252 SVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVK--ISKAKRRQAE 309
+ ++L+ E+ + L+++ + L L++ + + AE Q L+ ++ +S + R
Sbjct: 437 LQTELEELNEELEE----LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492
Query: 310 LETER 314
LE E+
Sbjct: 493 LEAEQ 497
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Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
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| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
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| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
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| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
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| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
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| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
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| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 96.6 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 96.54 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 96.17 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.05 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.98 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 95.66 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 95.55 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 95.38 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 95.1 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 93.93 | |
| TIGR03321 | 246 | alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. | 93.26 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 93.13 | |
| PRK14474 | 250 | F0F1 ATP synthase subunit B; Provisional | 93.02 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 92.73 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 92.72 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 92.65 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 92.6 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 92.52 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 92.38 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 91.79 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 90.63 | |
| PRK06231 | 205 | F0F1 ATP synthase subunit B; Validated | 89.79 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 89.56 | |
| PRK13461 | 159 | F0F1 ATP synthase subunit B; Provisional | 88.59 | |
| CHL00019 | 184 | atpF ATP synthase CF0 B subunit | 88.51 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 87.97 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 87.54 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 87.35 | |
| PRK11637 | 428 | AmiB activator; Provisional | 87.05 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 86.93 | |
| CHL00118 | 156 | atpG ATP synthase CF0 B' subunit; Validated | 86.91 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 86.4 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 86.3 | |
| PRK14472 | 175 | F0F1 ATP synthase subunit B; Provisional | 86.11 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 86.04 | |
| PRK13460 | 173 | F0F1 ATP synthase subunit B; Provisional | 85.59 | |
| PRK13453 | 173 | F0F1 ATP synthase subunit B; Provisional | 85.43 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 85.04 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 84.79 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 84.37 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 84.24 | |
| PRK05759 | 156 | F0F1 ATP synthase subunit B; Validated | 84.14 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 83.44 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 83.28 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 83.03 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 82.98 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 82.94 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 82.62 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 82.61 | |
| PRK09174 | 204 | F0F1 ATP synthase subunit B'; Validated | 81.89 | |
| PRK14471 | 164 | F0F1 ATP synthase subunit B; Provisional | 81.21 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 80.52 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 80.51 | |
| PRK13455 | 184 | F0F1 ATP synthase subunit B; Provisional | 80.22 |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.60 E-value=4.4 Score=53.12 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=68.8
Q ss_pred hhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003812 99 EDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKEL 178 (793)
Q Consensus 99 EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~kel 178 (793)
+....+.++..=..+..+-|..|...+-++|..|.+++..++ +.++.|.+.-+++|.....-...+..++.+-+.|
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~----e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD----ENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666667777777777777777777777743 4555666665666665554445566666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Q 003812 179 EEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF 214 (793)
Q Consensus 179 eekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~ 214 (793)
....+..|...++|..++.++=.. ..++.|++..+
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~-r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRI-RMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777777777777776666544333 34444444444
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK14474 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PRK06231 F0F1 ATP synthase subunit B; Validated | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >PRK13461 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >CHL00019 atpF ATP synthase CF0 B subunit | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >CHL00118 atpG ATP synthase CF0 B' subunit; Validated | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK14472 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK13460 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK13453 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK05759 F0F1 ATP synthase subunit B; Validated | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK09174 F0F1 ATP synthase subunit B'; Validated | Back alignment and domain information |
|---|
| >PRK14471 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK13455 F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 53/340 (15%), Positives = 138/340 (40%), Gaps = 23/340 (6%)
Query: 19 YPMYFGVSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCK 78
++F + R + KD++ ++ + A+L L Q EK
Sbjct: 840 MXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNL 896
Query: 79 LSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRI 138
L +KL AE E+ + A ++ + + ++ ++ ++ L E +
Sbjct: 897 LQEKL-QAETELYAEAEEMRVRLAAKKQELEEILHEMEA---RIEEEEERSQQLQAEKKK 952
Query: 139 LDKKKDE---SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELREN 195
+ ++ + + E + ++L + D +++ E +E++ + K + L E
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 196 AK------QEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQK 249
E +E + + K K ++S + ++ +++E K +L+ +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE---GES 1069
Query: 250 EESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRR--Q 307
+ +L +I +++ L +K++ L A L + + +T++K LK+++ ++ Q
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 308 AELETERWKAASQSRHERHSLRSMFVSQANSRLAASSGAK 347
+LE+E+ A +++ ++ L + + L +
Sbjct: 1130 EDLESEK-AARNKAEKQKRDLSEE-LEALKTELEDTLDTT 1167
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.72 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.58 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 94.64 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 92.95 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 91.77 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 90.77 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 85.22 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 80.88 |
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.76 Score=60.48 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhhhh
Q 003812 257 QKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAE-------LETERWKAASQS 321 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE-------~E~erWkrlaE~ 321 (793)
++|-..|+.|+.+.+.. +.||+.|-.++..++.+=..|+ -|..||..-.+.
T Consensus 2038 ~~le~~l~~L~~~~~~~--------------~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATL--------------IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 46777777777766543 4588888888888887777665 388999876665
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00