Citrus Sinensis ID: 003854

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-

MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

cccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHccccccccccccEEEEccccccccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHccccccccccccEEEEccccEEccccccccccccccEEEccccccccccccccEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccEEEEEccc

ccccccEEEccccccEEEEEEcccccccccHHcccccEEEEccccccccccccEEEEccccccccccccEEEEcccccccccccccccHHccccccccccccccccccHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccEEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEcccccEEccHHHHHHHHHHHccccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEcccHHEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHcccccccccHcccccHHHcHHHcccccHEEEcccHHcccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEEEcc

matggrliagshnrnefvlinADETARIKSVKelsgqtcqicedeieitdngepfvacnecafpvcrpcyeyerregnqacpqcktrykrlkgsprvegdeeeddiddldhefdygnldgfgpqhvSDAALSARlnasgiptrseldsaplssniplltygeedddissdrhalivppymghgnrvhpmpfadpstplqprpmvpqkdiavYGYGSVAWKDRMEEWKKRQNEKLQVVKheggsdsrnfdggelddsdlpmmdegrqplsrklpipsskispyRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSwildqfpkwypitreTYLDRLSLryekegkpsqlaKVDIFVstvdpmkepplitaNTVLSILAvdypvdkvacyvsddgaAMLTFEALSETSEFARKWVpfckkfnieprapewyfsqkidylrnkvhpaFVRERRAIKREYEEFKIRINALVATAqkvpeegwtmqdgtpwpgnnvrdhpgMIQVFLGqsgvrdvegnelpslvyvsrekrpgfehhkkaGAMNALVRVSAVLsnapyllnvdcdhyiNNSKALREAMCFmmdpqsgkkicyvqfpqrfdgidrhdrysnrnvvffdinmkgldgiqgpiyvgtgcvfrrqalygydapvkkkspgktcncwpkwcclccgsrknkkakqpkkdkkkksKNKEASKQIHALENIEEgveetnaekpsdmsrmklekkfgqspvfvdsslledggvtgdLKRASLLKEAIQVISCgyedktewgkevswldiwfcd

matggrliagshnrnefVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERregnqacpqcktrykrlkgsprvegdeeedDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIptrseldsaplssNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLqvvkheggsdsrnfdggelddsdlpMMDEGRqplsrklpipsskispYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRyekegkpsqlakVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFdgidrhdrySNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYdapvkkkspgktcncwpkWCCLCCgsrknkkakqpkkdkkkksknkeaskqihalenieegveetnaekpsdmSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVIScgyedktewgkevsWLDIWFCD

MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVegdeeeddiddldhefdYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYrliiilrlvilGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTcncwpkwcclccGSRknkkakqpkkdkkkksknkeaskqIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

*************RNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACP*C*****************************DYGNL*****************************************************************************************DIAVYGYGSVAWKDRM*******************************************************ISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSR*******HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCG**************************************************************FVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC*

****GRLIAGSHNRNEF***********************ICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR*K*******DEEEDDIDDLDHEFDY******************************************************************************************QKDIAVYGYGSVAWKDRM***********************************************KLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEK***PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFS*************FVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCG*********************************************************GQSPVFVD****************SLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR**************DIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGS***********************KQIHALENIEEG************SRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

*****RLIAGSHNRNEFVLINADETARIKSV*ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP*********DIDDLDHEFDYGNL****PQHVSDAALSAR*****************************************************************PRP*VPQKDIAVYGYGSVAWKDRMEEWKKRQN****************************M*DEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGS*******************************************PSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKxxxxxxxxxxxxxxxxxxxxxNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFCD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		791	2.2.26 [Sep-21-2011]
Q94JQ6		1084	Cellulose synthase A cata	yes	no	0.979	0.714	0.815	0.0
Q9SJ22		1088	Probable cellulose syntha	no	no	0.982	0.714	0.787	0.0
O48947		1084	Cellulose synthase A cata	no	no	0.977	0.713	0.794	0.0
Q8L778		1069	Cellulose synthase A cata	no	no	0.963	0.712	0.791	0.0
Q69V23		1093	Probable cellulose syntha	yes	no	0.983	0.711	0.684	0.0
Q851L8		1092	Probable cellulose syntha	yes	no	0.979	0.709	0.698	0.0
A2XNT2		1092	Probable cellulose syntha	N/A	no	0.979	0.709	0.698	0.0
Q6YVM4		1092	Probable cellulose syntha	no	no	0.975	0.706	0.694	0.0
Q6AT26		1076	Probable cellulose syntha	no	no	0.957	0.703	0.621	0.0
A2Y0X2		1076	Probable cellulose syntha	N/A	no	0.957	0.703	0.621	0.0

>sp\|Q94JQ6\|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2	Back alignment and function desciption

 Score = 1300 bits (3363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/788 (81%), Positives = 707/788 (89%), Gaps = 13/788 (1%)

Query: 1   MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNE 60
           M TGGRLIAGSHNRNEFVLINADE ARI+SV+ELSGQTCQIC DEIE+T +GEPFVACNE
Sbjct: 1   MNTGGRLIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDG 120
           CAFPVCRPCYEYERREGNQACPQCKTR+KRLKGSPRVEGDEEEDDIDDLD+EF+YGN +G
Sbjct: 61  CAFPVCRPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEEDDIDDLDNEFEYGN-NG 119

Query: 121 FGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYM 180
            G   VS+    +R N SG P +S+LDSAP  S IPLLTYG+ED +ISSDRHALIVPP +
Sbjct: 120 IGFDQVSEGMSISRRN-SGFP-QSDLDSAPPGSQIPLLTYGDEDVEISSDRHALIVPPSL 177

Query: 181 G-HGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKH 239
           G HGNRVHP+  +DP+    PRPMVPQKD+AVYGYGSVAWKDRMEEWK++QNEKLQVV+H
Sbjct: 178 GGHGNRVHPVSLSDPTVAAHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKLQVVRH 237

Query: 240 EGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHY 299
           EG  D   F+ G  DD+D PMMDEGRQPLSRK+PI SSKI+PYR++I+LRLVILGLFFHY
Sbjct: 238 EGDPD---FEDG--DDADFPMMDEGRQPLSRKIPIKSSKINPYRMLIVLRLVILGLFFHY 292

Query: 300 RILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQL 359
           RILHPV +AYALWL SVICEIWF VSW+LDQFPKWYPI RETYLDRLSLRYEKEGKPS L
Sbjct: 293 RILHPVKDAYALWLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGL 352

Query: 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEF 419
           + VD+FVSTVDP+KEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSET+EF
Sbjct: 353 SPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEF 412

Query: 420 ARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVA 479
           ARKWVPFCKK+ IEPRAPEWYF  K+DYL+NKVHPAFVRERRA+KR+YEEFK++INALVA
Sbjct: 413 ARKWVPFCKKYCIEPRAPEWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVA 472

Query: 480 TAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPG 539
           TAQKVPE+GWTMQDGTPWPGN+VRDHPGMIQVFLG  GVRDVE NELP LVYVSREKRPG
Sbjct: 473 TAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGSDGVRDVENNELPRLVYVSREKRPG 532

Query: 540 FEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599
           F+HHKKAGAMN+L+RVS VLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV
Sbjct: 533 FDHHKKAGAMNSLIRVSGVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 592

Query: 600 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKK 659
           QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG+QGPIYVGTGCVFRRQALYG+DAP KKK
Sbjct: 593 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGFDAPKKKK 652

Query: 660 SPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEG--VEET 717
            P KTCNCWPKWC LC GSRKN+KAK    DKKK  KN+EASKQIHALENIEEG   + +
Sbjct: 653 GPRKTCNCWPKWCLLCFGSRKNRKAKTVAADKKK--KNREASKQIHALENIEEGRVTKGS 710

Query: 718 NAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTE 777
           N E+ ++  +MKLEKKFGQSPVFV S+ +E+GG+  +   A LLKEAIQVISCGYEDKTE
Sbjct: 711 NVEQSTEAMQMKLEKKFGQSPVFVASARMENGGMARNASPACLLKEAIQVISCGYEDKTE 770

Query: 778 WGKEVSWL 785
           WGKE+ W+
Sbjct: 771 WGKEIGWI 778

Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation. The presence of each protein CESA1 and CESA6 is critical for cell expansion. The hypocotyl elongation is based on a CESA6-dependent cell elongation in dark and a CESA6-independent cell elongation in light. The transition between these two mechanisms requires photosynthesis and PHYB, but not CRY1. The CESA6-dependent cell elongation seems to be independent of gibberellic acid, auxin and ethylene. May be involved in sensitivity to isoxaben. Associates with and moves along cortical microtubules for the process of cellulose deposition.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2

>sp\|Q9SJ22\|CESA9_ARATH Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1	Back alignment and function description

>sp\|O48947\|CESA2_ARATH Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1	Back alignment and function description

>sp\|Q8L778\|CESA5_ARATH Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2	Back alignment and function description

>sp\|Q69V23\|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1	Back alignment and function description

>sp\|Q851L8\|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1	Back alignment and function description

>sp\|A2XNT2\|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1	Back alignment and function description

>sp\|Q6YVM4\|CESA6_ORYSJ Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1	Back alignment and function description

>sp\|Q6AT26\|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1	Back alignment and function description

>sp\|A2Y0X2\|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		791
224096488		1095	predicted protein [Populus trichocarpa]	0.987	0.713	0.865	0.0
429326426		1096	cellulose synthase [Populus tomentosa]	0.988	0.713	0.867	0.0
224083850		1096	hypothetical protein POPTRDRAFT_760228 [	0.988	0.713	0.871	0.0
37725363		1096	cellulose synthase [Populus tremuloides]	0.988	0.713	0.867	0.0
224096486		1096	predicted protein [Populus trichocarpa]	0.987	0.712	0.865	0.0
356525568		1097	PREDICTED: cellulose synthase A catalyti	0.988	0.712	0.834	0.0
356512789		1097	PREDICTED: cellulose synthase A catalyti	0.988	0.712	0.828	0.0
376315422		1095	CESA5 [Gossypium hirsutum]	0.986	0.712	0.839	0.0
357519771		1098	Cellulose synthase A catalytic subunit [	0.987	0.711	0.824	0.0
47078500		1096	cellulose synthase [Populus tremula x Po	0.988	0.713	0.856	0.0

>gi\|224096488\|ref\|XP_002310629.1\| predicted protein [Populus trichocarpa] gi\|222853532\|gb\|EEE91079.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1356 bits (3509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/793 (86%), Positives = 735/793 (92%), Gaps = 12/793 (1%)

Query: 1   MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNE 60
           M TGGRLIAGSHNRNEFVLINADE ARIKSV+ELSGQ C IC DEIEIT +GEPFVACNE
Sbjct: 1   MNTGGRLIAGSHNRNEFVLINADENARIKSVQELSGQVCHICGDEIEITVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDG 120
           CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDL+HEFDYGN DG
Sbjct: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLEHEFDYGNFDG 120

Query: 121 FGPQHVSDAALSARLNA--------SGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRH 172
             P+ V++A LS+R+N         SGIPT  ELDS+PL+S IPLLTYGEED +ISSDRH
Sbjct: 121 LSPEQVAEAMLSSRMNTGRASHSNISGIPTHGELDSSPLNSKIPLLTYGEEDTEISSDRH 180

Query: 173 ALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNE 232
           ALIVPP   HGNR HP+ F DPS P QPRPMVP+KDIAVYGYGSVAWKDRME+WKKRQN+
Sbjct: 181 ALIVPP--SHGNRFHPISFPDPSIPSQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQND 238

Query: 233 KLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVI 292
           KLQVVKHEGG D+ NF+G ELDD DLPMMDEGRQPLSRKLPIPSSKI+PYR+IIILRLV+
Sbjct: 239 KLQVVKHEGGHDNGNFEGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVV 298

Query: 293 LGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEK 352
           +GLFFHYRILHPVN+AY LWLTSVICEIWF VSWILDQFPKWYPI RETYLDRLSLRYEK
Sbjct: 299 VGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEK 358

Query: 353 EGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA 412
           EGKPS+LA VD+FVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA
Sbjct: 359 EGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA 418

Query: 413 LSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKI 472
           LSETSEFARKWVPFCKKFNIEPRAPEWYFSQK+DYL+NKVHPAFVRERRA+KREYEEFK+
Sbjct: 419 LSETSEFARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKV 478

Query: 473 RINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYV 532
           +IN LVATAQKVPE+GWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELP LVYV
Sbjct: 479 KINGLVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPRLVYV 538

Query: 533 SREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQS 592
           SREKRPGFEHHKKAGAMNAL+RV+AVLSNAPYLLNVDCDHYINNS+ALREAMCF+MDP S
Sbjct: 539 SREKRPGFEHHKKAGAMNALMRVTAVLSNAPYLLNVDCDHYINNSRALREAMCFLMDPTS 598

Query: 593 GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 652
           GKK+CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG+QGPIYVGTGCVFRRQALYGY
Sbjct: 599 GKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGY 658

Query: 653 DAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEE 712
           DAPVKK+ PGKTCNCWPKWCCL CGSRKNKK+KQ  K +KKKSKN+EASKQIHALENIEE
Sbjct: 659 DAPVKKRPPGKTCNCWPKWCCLFCGSRKNKKSKQ--KKEKKKSKNREASKQIHALENIEE 716

Query: 713 GVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGY 772
           G+EE+ +EK S+ S+MKLEKKFGQSPVFV S+LLE+GGV  D   ASLL+EAIQVISCGY
Sbjct: 717 GIEESTSEKSSETSQMKLEKKFGQSPVFVASTLLENGGVPRDASPASLLREAIQVISCGY 776

Query: 773 EDKTEWGKEVSWL 785
           EDKTEWGKEV W+
Sbjct: 777 EDKTEWGKEVGWI 789

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|429326426\|gb\|AFZ78553.1\| cellulose synthase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224083850\|ref\|XP_002307145.1\| hypothetical protein POPTRDRAFT_760228 [Populus trichocarpa] gi\|222856594\|gb\|EEE94141.1\| hypothetical protein POPTRDRAFT_760228 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|37725363\|gb\|AAO25581.1\| cellulose synthase [Populus tremuloides]	Back alignment and taxonomy information

>gi\|224096486\|ref\|XP_002310628.1\| predicted protein [Populus trichocarpa] gi\|222853531\|gb\|EEE91078.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356525568\|ref\|XP_003531396.1\| PREDICTED: cellulose synthase A catalytic subunit 6 [UDP-forming]-like [Glycine max]	Back alignment and taxonomy information

>gi\|356512789\|ref\|XP_003525098.1\| PREDICTED: cellulose synthase A catalytic subunit 6 [UDP-forming]-like [Glycine max]	Back alignment and taxonomy information

>gi\|376315422\|gb\|AFB18634.1\| CESA5 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|357519771\|ref\|XP_003630174.1\| Cellulose synthase A catalytic subunit [Medicago truncatula] gi\|355524196\|gb\|AET04650.1\| Cellulose synthase A catalytic subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|47078500\|gb\|AAT09898.1\| cellulose synthase [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		791
TAIR\|locus:2136308		1084	CESA2 "cellulose synthase A2"	0.978	0.714	0.757	0.0
TAIR\|locus:2176090		1084	CESA6 "cellulose synthase 6" [	0.979	0.714	0.753	0.0
TAIR\|locus:2052576		1088	CESA9 "cellulose synthase A9"	0.982	0.714	0.733	2.60000000198e-315
TAIR\|locus:2178193		1069	CESA5 "cellulose synthase 5" [	0.796	0.589	0.761	5e-266
TAIR\|locus:2127776		1081	CESA1 "cellulose synthase 1" [	0.806	0.590	0.617	5.1e-245
TAIR\|locus:2040080		1065	CESA10 "cellulose synthase 10"	0.795	0.590	0.607	1.7e-235
TAIR\|locus:2178935		1026	IRX3 "IRREGULAR XYLEM 3" [Arab	0.541	0.417	0.720	7.2e-235
TAIR\|locus:2156789		1065	CEV1 "CONSTITUTIVE EXPRESSION	0.938	0.696	0.575	1.2e-232
TAIR\|locus:2172457		1049	CESA4 "cellulose synthase A4"	0.557	0.420	0.702	7.7e-227
TAIR\|locus:2124167		985	IRX1 "IRREGULAR XYLEM 1" [Arab	0.563	0.452	0.692	9.7e-210

TAIR\|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3135 (1108.6 bits), Expect = 0., P = 0.
 Identities = 597/788 (75%), Positives = 652/788 (82%)

Query:     1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNE 60
             M TGGRLIAGSHNRNEFVLINADE+ARI+SV+ELSGQTCQIC DEIE+T + E FVACNE
Sbjct:     1 MNTGGRLIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNE 60

Query:    61 CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVXXXXXXXXXXXXXXXXXYGNLDG 120
             CAFPVCRPCYEYERREGNQACPQCKTRYKR+KGSPRV                 Y    G
Sbjct:    61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDDEEEEDIDDLE---YEFDHG 117

Query:   121 FGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYM 180
               P+H ++AALS+RLN      R  LDSAP  S IPLLTY +ED D+ SDRHALIVPP  
Sbjct:   118 MDPEHAAEAALSSRLNTG----RGGLDSAPPGSQIPLLTYCDEDADMYSDRHALIVPPST 173

Query:   181 GHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHE 240
             G+GNRV+P PF D S P Q R MVPQKDIA YGYGSVAWKDRME WK+RQ EKLQV+KHE
Sbjct:   174 GYGNRVYPAPFTDSSAPPQARSMVPQKDIAEYGYGSVAWKDRMEVWKRRQGEKLQVIKHE 233

Query:   241 GGSDSRNF-DGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYXXXXXXXXXXXGLFFHY 299
             GG++ R   D  ELDD D+PMMDEGRQPLSRKLPI SS+I+PY           GLFFHY
Sbjct:   234 GGNNGRGSNDDDELDDPDMPMMDEGRQPLSRKLPIRSSRINPYRMLILCRLAILGLFFHY 293

Query:   300 RILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQL 359
             RILHPVN+AY LWLTSVICEIWF VSWILDQFPKWYPI RETYLDRLSLRYEKEGKPS L
Sbjct:   294 RILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSGL 353

Query:   360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEF 419
             A VD+FVSTVDP+KEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALS+T+EF
Sbjct:   354 APVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEF 413

Query:   420 ARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVA 479
             ARKWVPFCKKFNIEPRAPEWYFSQK+DYL+NKVHPAFVRERRA+KR+YEEFK++INALVA
Sbjct:   414 ARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVA 473

Query:   480 TAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPG 539
             TAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLG SGVRD +GNELP LVYVSREKRPG
Sbjct:   474 TAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDTDGNELPRLVYVSREKRPG 533

Query:   540 FEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599
             F+HHKKAGAMN+L+RVSAVLSNAPYLLNVDCDHYINNSKA+RE+MCFMMDPQSGKK+CYV
Sbjct:   534 FDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQSGKKVCYV 593

Query:   600 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKK 659
             QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG+DAP KKK
Sbjct:   594 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPKKKK 653

Query:   660 SPGKTXXXXXXXXXXXXGSRXXXXXXXXXXXXXXXXXXXXXXXXIHALENIEEGV--EET 717
              PGKT            G R                        IHALEN++EGV    +
Sbjct:   654 PPGKTCNCWPKWCCLCCGLRKKSKTKAKDKKTNTKETSKQ----IHALENVDEGVIVPVS 709

Query:   718 NAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTE 777
             N EK S+ +++KLEKKFGQSPVFV S++L++GGV  +   A LL+EAIQVISCGYEDKTE
Sbjct:   710 NVEKRSEATQLKLEKKFGQSPVFVASAVLQNGGVPRNASPACLLREAIQVISCGYEDKTE 769

Query:   778 WGKEVSWL 785
             WGKE+ W+
Sbjct:   770 WGKEIGWI 777

GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016759 "cellulose synthase activity" evidence=ISS;IMP

GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA

GO:0030244 "cellulose biosynthetic process" evidence=IEA;IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0009833 "primary cell wall biogenesis" evidence=TAS

TAIR\|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94JQ6	CESA6_ARATH	2, ., 4, ., 1, ., 1, 2	0.8159	0.9797	0.7149	yes	no
Q851L8	CESA5_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.6981	0.9797	0.7097	yes	no
Q69V23	CESA3_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.6847	0.9835	0.7118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.963
4th Layer	2.4.1.12	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		791
PLN02436		1094	PLN02436, PLN02436, cellulose synthase A	0.0
PLN02400		1085	PLN02400, PLN02400, cellulose synthase	0.0
PLN02638		1079	PLN02638, PLN02638, cellulose synthase A (UDP-form	0.0
PLN02189		1040	PLN02189, PLN02189, cellulose synthase	0.0
PLN02915		1044	PLN02915, PLN02915, cellulose synthase A [UDP-form	0.0
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	0.0
pfam03552		716	pfam03552, Cellulose_synt, Cellulose synthase	0.0
PLN02248		1135	PLN02248, PLN02248, cellulose synthase-like protei	0.0
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	1e-97
PLN02190		756	PLN02190, PLN02190, cellulose synthase-like protei	7e-96
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	1e-14
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	1e-10
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	5e-08
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	4e-05
cd06423		180	cd06423, CESA_like, CESA_like is the cellulose syn	2e-04
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	3e-04
COG1215		439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG5175		480	COG5175, MOT2, Transcriptional repressor [Transcri	4e-04
cd06435		236	cd06435, CESA_NdvC_like, NdvC_like proteins in thi	0.003

>gnl\|CDD\|215239 PLN02436, PLN02436, cellulose synthase A	Back alignment and domain information

 Score = 1646 bits (4264), Expect = 0.0
 Identities = 687/791 (86%), Positives = 732/791 (92%), Gaps = 9/791 (1%)

Query: 1   MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNE 60
           M TGGRLIAGSHNRNEFVLINADE ARI+SV+ELSGQTCQIC DEIE+T +GEPFVACNE
Sbjct: 1   MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDG 120
           CAFPVCRPCYEYERREGNQACPQCKTRYKR+KGSPRVEGDEEEDDIDDL++EFDYGN +G
Sbjct: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGN-NG 119

Query: 121 FGPQHVSDAALSARLN------ASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHAL 174
             P+ V++A LS+RLN       SGI T SELDSAP  S IPLLTYGEED +ISSDRHAL
Sbjct: 120 LDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGEEDVEISSDRHAL 179

Query: 175 IVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKL 234
           IVPP  GHGNRVHPMPF D S  LQPRPMVPQKD+AVYGYGSVAWKDRMEEWKK+QNEKL
Sbjct: 180 IVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKL 239

Query: 235 QVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILG 294
           QVVKHEGG+D  N DG ELDD DLPMMDEGRQPLSRKLPIPSSKI+PYR+IIILRLVILG
Sbjct: 240 QVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILG 299

Query: 295 LFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEG 354
           LFFHYRILHPVN+AY LWLTSVICEIWF VSWILDQFPKWYPI RETYLDRLSLRYEKEG
Sbjct: 300 LFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEG 359

Query: 355 KPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALS 414
           KPS+LA VD+FVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALS
Sbjct: 360 KPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALS 419

Query: 415 ETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRI 474
           ETSEFARKWVPFCKKF+IEPRAPEWYFSQK+DYL+NKVHPAFVRERRA+KREYEEFK++I
Sbjct: 420 ETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKI 479

Query: 475 NALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSR 534
           NALVATAQKVPE+GWTMQDGTPWPGNNVRDHPGMIQVFLG SGVRDVEGNELP LVYVSR
Sbjct: 480 NALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSR 539

Query: 535 EKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK 594
           EKRPGF+HHKKAGAMN+L+RVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK
Sbjct: 540 EKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK 599

Query: 595 KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 654
           KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA
Sbjct: 600 KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 659

Query: 655 PVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGV 714
           P KKK PGKTCNCWPKWCCLCCGSRK KK K+ K+ KKK  KN+EASKQIHALENIEEG+
Sbjct: 660 PKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKK--KNREASKQIHALENIEEGI 717

Query: 715 EETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYED 774
           E +N EK S+  ++KLEKKFGQSPVFV S+LLE+GGV  +   ASLL+EAIQVISCGYED
Sbjct: 718 EGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYED 777

Query: 775 KTEWGKEVSWL 785
           KTEWGKE+ W+
Sbjct: 778 KTEWGKEIGWI 788

Length = 1094

>gnl\|CDD\|215224 PLN02400, PLN02400, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215121 PLN02189, PLN02189, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|217611 pfam03552, Cellulose_synt, Cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215138 PLN02248, PLN02248, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215122 PLN02190, PLN02190, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|227502 COG5175, MOT2, Transcriptional repressor [Transcription]	Back alignment and domain information

>gnl\|CDD\|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		791
PLN02436		1094	cellulose synthase A	100.0
PLN02400		1085	cellulose synthase	100.0
PLN02638		1079	cellulose synthase A (UDP-forming), catalytic subu	100.0
PLN02189		1040	cellulose synthase	100.0
PLN02915		1044	cellulose synthase A [UDP-forming], catalytic subu	100.0
PLN02195		977	cellulose synthase A	100.0
PLN02248		1135	cellulose synthase-like protein	100.0
PF03552		720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	100.0
PLN02190		756	cellulose synthase-like protein	100.0
PLN02893		734	Cellulose synthase-like protein	100.0
PF14569		80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	100.0
TIGR03030		713	CelA cellulose synthase catalytic subunit (UDP-for	100.0
PRK11498		852	bcsA cellulose synthase catalytic subunit; Provisi	100.0
cd04191		254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.87
PRK05454		691	glucosyltransferase MdoH; Provisional	99.84
COG1215		439	Glycosyltransferases, probably involved in cell wa	99.76
cd06421		234	CESA_CelA_like CESA_CelA_like are involved in the	99.63
PRK14583		444	hmsR N-glycosyltransferase; Provisional	99.61
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.57
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.51
PRK11204		420	N-glycosyltransferase; Provisional	99.48
cd06427		241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.46
cd06435		236	CESA_NdvC_like NdvC_like proteins in this family a	99.44
PF13641		228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.43
cd06436		191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.41
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	99.37
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	99.32
cd06438		183	EpsO_like EpsO protein participates in the methano	99.28
PRK11234		727	nfrB bacteriophage N4 adsorption protein B; Provis	99.23
cd04192		229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.2
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.15
cd02520		196	Glucosylceramide_synthase Glucosylceramide synthas	99.14
cd06434		235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.12
cd04190		244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.02
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	99.02
PRK15489		703	nfrB bacteriophage N4 adsorption protein B; Provis	98.99
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	98.97
cd06423		180	CESA_like CESA_like is the cellulose synthase supe	98.93
cd04184		202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	98.91
cd04195		201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	98.87
PF00535		169	Glycos_transf_2: Glycosyl transferase family 2; In	98.87
cd04196		214	GT_2_like_d Subfamily of Glycosyltransferase Famil	98.87
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	98.81
cd06433		202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	98.69
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	98.61
PLN02726		243	dolichyl-phosphate beta-D-mannosyltransferase	98.6
cd06442		224	DPM1_like DPM1_like represents putative enzymes si	98.57
cd04179		185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	98.56
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	98.55
cd02510		299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	98.49
cd02522		221	GT_2_like_a GT_2_like_a represents a glycosyltrans	98.48
cd04185		202	GT_2_like_b Subfamily of Glycosyltransferase Famil	98.36
cd04187		181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	98.31
cd02526		237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	98.29
cd06913		219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	98.14
cd04188		211	DPG_synthase DPG_synthase is involved in protein N	98.11
PRK10073		328	putative glycosyl transferase; Provisional	98.02
PRK10018		279	putative glycosyl transferase; Provisional	98.0
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	97.97
cd00761		156	Glyco_tranf_GTA_type Glycosyltransferase family A	97.92
TIGR01556		281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	97.67
PRK13915		306	putative glucosyl-3-phosphoglycerate synthase; Pro	97.65
PF13632		193	Glyco_trans_2_3: Glycosyl transferase family group	97.62
COG2943		736	MdoH Membrane glycosyltransferase [Cell envelope b	97.5
PF10111		281	Glyco_tranf_2_2: Glycosyltransferase like family 2	97.44
PRK10063		248	putative glycosyl transferase; Provisional	97.35
PF13506		175	Glyco_transf_21: Glycosyl transferase family 21	97.23
COG0463		291	WcaA Glycosyltransferases involved in cell wall bi	97.12
PRK10714		325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	96.95
COG5175		480	MOT2 Transcriptional repressor [Transcription]	96.23
cd02514		334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	96.21
cd02511		229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	96.19
COG1216		305	Predicted glycosyltransferases [General function p	95.77
PF14446		54	Prok-RING_1: Prokaryotic RING finger family 1	95.61
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	94.95
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	89.39
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	87.06
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	82.59

>PLN02436 cellulose synthase A	Back alignment and domain information

Probab=100.00  E-value=5.3e-254  Score=2172.26  Aligned_cols=785  Identities=86%  Similarity=1.422  Sum_probs=719.5

Q ss_pred             CCCCCcccccccCCceEEEeccccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 003854            1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA   80 (791)
Q Consensus         1 m~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~   80 (791)
                      ||+++|||||||||||||+|++|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus         1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~   80 (1094)
T PLN02436          1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA   80 (1094)
T ss_pred             CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence            99999999999999999999999766678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccCCCCcCCCCCccccccccccccCCCCCCCCCcchhhhHHhhhhccCCCCCC----CcC--CCCCCCCC
Q 003854           81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTR----SEL--DSAPLSSN  154 (791)
Q Consensus        81 CPqCKt~Ykr~kGsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~  154 (791)
                      |||||||||||||||||+|||||+++||+||||++. .++.+.++++|+|++++|++|++.+-    +..  +..+..++
T Consensus        81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (1094)
T PLN02436         81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQ  159 (1094)
T ss_pred             CcccCCchhhccCCCCcCCccccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCC
Confidence            999999999999999999999999999999999986 22224577899999999999988661    101  11011346


Q ss_pred             CCccccCC--CCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhh
Q 003854          155 IPLLTYGE--EDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNE  232 (791)
Q Consensus       155 ~~~~~~~~--~~~~~~~~~h~~~~~~~~g~g~~~~~~~~~~~~~p~~~r~~~~~k~~~~yg~g~~~w~~~~~~wk~~~~~  232 (791)
                      +|+|++++  +|++  +++|++++|+.+|.||||||+||+++++++++|.|||+||+++||||||+||||||+||+||++
T Consensus       160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~  237 (1094)
T PLN02436        160 IPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNE  237 (1094)
T ss_pred             CcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhh
Confidence            79999876  5555  6778887888888899999999999999999999999999999999999999999999999985


Q ss_pred             hhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeeecCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCchhHHH
Q 003854          233 KLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALW  312 (791)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~liv~~li~l~~yl~wRi~~~~~~a~~lW  312 (791)
                      |++++.+..+...++++|++.+++|++++|++++||+||+++++++|+|||++++++|++|++||+|||+|++.+++|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~W  317 (1094)
T PLN02436        238 KLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLW  317 (1094)
T ss_pred             cccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHH
Confidence            55555543111001222223346788889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCC
Q 003854          313 LTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYP  392 (791)
Q Consensus       313 l~~~i~Ei~fa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~DP~kEPp~vt~nTVlS~lAlDYP  392 (791)
                      +++++||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+|||||||+||.+|||++|+|||||+||+|||
T Consensus       318 l~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP  397 (1094)
T PLN02436        318 LTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYP  397 (1094)
T ss_pred             HHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999988778999999999999999999999999999999999999


Q ss_pred             CCccEEEEcCCCCchhhHHHHHHHHHHHhhhHHHHHhhcCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHH
Q 003854          393 VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKI  472 (791)
Q Consensus       393 ~~Kl~~YVsDDG~s~lTf~aL~Eaa~FA~~WVPFCkK~~IepRaPe~YFs~~~d~~~~k~~~~f~~err~mKreYee~k~  472 (791)
                      ++||+|||||||+|+||||||+|||+|||+||||||||+|||||||+||+++.++++++++++|++|||+|||||||||+
T Consensus       398 ~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~  477 (1094)
T PLN02436        398 VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKV  477 (1094)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCccCccccCCCCCCCCCcCCCccceeeeccCCCCcCCCCCCCCeEEEEeccCCCCCCCccchhhhhHH
Q 003854          473 RINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNAL  552 (791)
Q Consensus       473 rI~~L~~k~~~~~~~~w~m~dgt~w~g~~~rdHp~iiqV~~~~~g~~d~~g~~lP~lvYvSReKrPg~~Hh~KAGalN~l  552 (791)
                      |||+|+++++++|+++|.|+|||+|||++++|||+|||||++++++.|.+|++||+||||||||||||+||+||||||+|
T Consensus       478 RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaL  557 (1094)
T PLN02436        478 KINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSL  557 (1094)
T ss_pred             HHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhh
Confidence            99999988899999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCEEEEecCCCCCChHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCccccchhhhhhhhccccccC
Q 003854          553 VRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGI  632 (791)
Q Consensus       553 LrvSa~ltngpfILnlDcD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~Nid~~D~~~n~n~vFfdii~~grDG~  632 (791)
                      |||||+|||||||||||||||||||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++++|+||+
T Consensus       558 lRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGl  637 (1094)
T PLN02436        558 IRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGI  637 (1094)
T ss_pred             hhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCcccccCCcchhhhcchhhhhhhhhhhhhhhhc
Q 003854          633 QGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEE  712 (791)
Q Consensus       633 qgp~y~GTGcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (791)
                      |||+|+||||+|||+||||++||...+.+...++||++||||||++++++++...+..+  ..++.+...++++++++++
T Consensus       638 qGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  715 (1094)
T PLN02436        638 QGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK--KKKNREASKQIHALENIEE  715 (1094)
T ss_pred             CCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc
Confidence            99999999999999999999999877766778899999999999988775432211111  1234455668889999999


Q ss_pred             cccccccCCCcccchhHHHhhcCCChhhhhhcccccCCCCCCCChhhHHHHHHHcccccCCCCCcCCCceeEEecccc
Q 003854          713 GVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVSWLDIWFC  790 (791)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGWiYg~~~  790 (791)
                      +.++++++++..++++.++++||+|++||+|+++++++++.+.+++++|+||++||||+||++|+||+|||||||++.
T Consensus       716 ~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvT  793 (1094)
T PLN02436        716 GIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVT  793 (1094)
T ss_pred             ccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeecccee
Confidence            999999999989999999999999999999999988888888889999999999999999999999999999999864

>PLN02400 cellulose synthase	Back alignment and domain information

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>PLN02189 cellulose synthase	Back alignment and domain information

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>PLN02195 cellulose synthase A	Back alignment and domain information

>PLN02248 cellulose synthase-like protein	Back alignment and domain information

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals	Back alignment and domain information

>PLN02190 cellulose synthase-like protein	Back alignment and domain information

>PLN02893 Cellulose synthase-like protein	Back alignment and domain information

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A	Back alignment and domain information

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily	Back alignment and domain information

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A	Back alignment and domain information

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis	Back alignment and domain information

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis	Back alignment and domain information

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan	Back alignment and domain information

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	Back alignment and domain information

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	Back alignment and domain information

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase	Back alignment and domain information

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1	Back alignment and domain information

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans	Back alignment and domain information

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	Back alignment and domain information

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1	Back alignment and domain information

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase	Back alignment and domain information

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine	Back alignment and domain information

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation	Back alignment and domain information

>PRK10073 putative glycosyl transferase; Provisional	Back alignment and domain information

>PRK10018 putative glycosyl transferase; Provisional	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	Back alignment and domain information

>TIGR01556 rhamnosyltran L-rhamnosyltransferase	Back alignment and domain information

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional	Back alignment and domain information

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2	Back alignment and domain information

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>PF13506 Glyco_transf_21: Glycosyl transferase family 21	Back alignment and domain information

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides	Back alignment and domain information

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	Back alignment and domain information

>COG1216 Predicted glycosyltransferases [General function prediction only]	Back alignment and domain information

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		791
1weo_A		93	Solution Structure Of Ring-Finger In The Catalytic		1e-24

>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93

Back alignment and structure

Iteration: 1

Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 50/69 (72%), Positives = 56/69 (81%) Query: 29 KSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 K +K L GQ C+IC D+I +T G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRY Sbjct: 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 Query: 89 KRLKGSPRV 97 KRL+GSPRV Sbjct: 69 KRLRGSPRV 77

PyMOL of 1weo

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		791
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	3e-40
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	2e-08

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93	Back alignment and structure

 Score =  141 bits (357), Expect = 3e-40
 Identities = 58/84 (69%), Positives = 66/84 (78%)

Query: 29  KSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K +K L GQ C+IC D+I +T  G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRY
Sbjct: 9   KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68

Query: 89  KRLKGSPRVEGDEEEDDIDDLDHE 112
           KRL+GSPRVEGDE+E+DID     
Sbjct: 69  KRLRGSPRVEGDEDEEDIDSGPSS 92

PyMOL of 1weo

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		791
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	100.0
4hg6_A		802	Cellulose synthase subunit A; membrane translocati	99.94
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.14
1qg8_A		255	Protein (spore coat polysaccharide biosynthesis P	98.94
1xhb_A		472	Polypeptide N-acetylgalactosaminyltransferase 1; g	98.89
2ffu_A		501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	98.88
2d7i_A		570	Polypeptide N-acetylgalactosaminyltransferase 10;	98.88
3bcv_A		240	Putative glycosyltransferase protein; protein stru	98.88
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	98.65
3ckj_A		329	Putative uncharacterized protein; mycobacteria, un	98.47
3l7i_A		729	Teichoic acid biosynthesis protein F; GT-B fold, m	98.24
3f1y_A		387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	97.89
4fix_A		657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	97.85
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	96.32
1fo8_A		343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	95.07
2bo4_A		397	Mannosylglycerate synthase; catalysis, glycosyltra	94.15
2nxv_A		249	ATP synthase subunits region ORF 6; majastridin, A	93.85
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.36
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	88.76
2zu9_A		394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	87.85
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	87.73
2fy7_A		287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	87.54
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	87.45
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	86.09
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	85.85
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	85.82
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	85.45
2ect_A		78	Ring finger protein 126; metal binding protein, st	83.85
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	83.44
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	83.4
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	83.3
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	82.24
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	81.63
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	81.37

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1	Back alignment and structure

Probab=100.00  E-value=1.1e-44  Score=319.35  Aligned_cols=84  Identities=69%  Similarity=1.316  Sum_probs=81.6

Q ss_pred             cccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCCccccc
Q 003854           28 IKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDID  107 (791)
Q Consensus        28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~ee~~~d  107 (791)
                      +|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||+|+++|
T Consensus         8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d   87 (93)
T 1weo_A            8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID   87 (93)
T ss_dssp             SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred             CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 003854          108 DLDH  111 (791)
Q Consensus       108 d~~~  111 (791)
                      |+++
T Consensus        88 D~~~   91 (93)
T 1weo_A           88 SGPS   91 (93)
T ss_dssp             CCCS
T ss_pred             cccc
Confidence            9763

PyMOL of 1weo

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*	Back alignment and structure

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17	Back alignment and structure

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*	Back alignment and structure

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*	Back alignment and structure

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A	Back alignment and structure

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*	Back alignment and structure

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*	Back alignment and structure

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*	Back alignment and structure

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*	Back alignment and structure

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*	Back alignment and structure

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*	Back alignment and structure

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		791
d1weoa_		93	g.44.1.1 (A:) Cellulose synthase A catalytic subun	1e-46
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-04

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  158 bits (401), Expect = 1e-46
 Identities = 58/80 (72%), Positives = 66/80 (82%)

Query: 29  KSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K +K L GQ C+IC D+I +T  G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRY
Sbjct: 9   KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68

Query: 89  KRLKGSPRVEGDEEEDDIDD 108
           KRL+GSPRVEGDE+E+DID 
Sbjct: 69  KRLRGSPRVEGDEDEEDIDS 88

PyMOL of d1weoa_

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		791
d1weoa_		93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	100.0
d1xhba2		328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.04
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	98.71
d1omza_		265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	98.43
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	95.92
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	95.36
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	94.5
d2bo4a1		381	Mannosylglycerate synthase, MGS {Rhodothermus mari	92.57
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	90.15

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.4e-45  Score=316.12  Aligned_cols=86  Identities=67%  Similarity=1.310  Sum_probs=81.9

Q ss_pred             ccccccccccccCCcccccccccccccCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCcCCCCC
Q 003854           23 DETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEE  102 (791)
Q Consensus        23 ~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~FpvCr~CyeyerkeG~q~CPqCKt~Ykr~kGsprv~gd~e  102 (791)
                      +++..+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||++
T Consensus         3 ~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~   82 (93)
T d1weoa_           3 SGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDED   82 (93)
T ss_dssp             CSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCC
T ss_pred             CCCCCCCChhhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCCCCCCCcc
Confidence            34455799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 003854          103 EDDIDD  108 (791)
Q Consensus       103 e~~~dd  108 (791)
                      ||++||
T Consensus        83 e~~~d~   88 (93)
T d1weoa_          83 EEDIDS   88 (93)
T ss_dssp             CCCSCC
T ss_pred             cccccc
Confidence            998776

PyMOL of d1weoa_

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure