Citrus Sinensis ID: 003863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790
Protein Sequence
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLFNKK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccHHHHcccHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEccccccccccccccccccccccccccccccccEccHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHcccHHHHHHHcHHHHHcccccccEEEccccccHHHHHHHHHHHccccEEEccccccccccHHHHHHcccccccEEEcccHHHcccccccHHHcEccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MRDENASENRAKTlkfadqnqppksqntktnssinpskprsswglkgftvdkktksqttatskklplttnssdvtnqknsiVASHSRVKRSLIgdlacsmnpaqvhpnsyqthrrqssgsrdLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKndnknainmgssssqnLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDElqnscsttnsekasspnTIEEIVENvgslpnqnnkvleysggrrLSFIKKFkkwpiaseemsnlecqdnvLDKTWVQleegrsprrrhsisgsncraeelmpnkrrqsdgfmctketeheeeslssqkydfdqrpqfsanrlemnrnasvLEVEKRvlrvpnppprpscgisggtkeerqaqipqppplprppppppapkfsgksttgvvqrAPQVVEFYHSLmkrdsrkdssnggvceapnvanVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVlkhfdwpekkADTLREAAFGYRDLKKLESevsyykddprvpcDLALKKMVSLSEKMERTVYALLRTRETLMRNCREfqiptawmlddgiiskIKLSSVKLAKKYMRRVAMELQskagvekdpAMDYMLLQGVRFAFRIhqfaggfdaeTMHAFEELRNIAHLFNKK
Flexible Loop (DISEMBL)
mrdenasenraktlkfadqnqppksqntktnssinpskprsswglkgftvdkktksqttatskklplttnssdvtnqknsivashsrVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQaelsewkrnpkvlelereleakkiendeivrrvgmledektslSEQLAALSVILErkndnknainmgssssqnleMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNScsttnsekasspnTIEEIVenvgslpnqnNKVLeysggrrlsFIKKFKKWPIASeemsnlecqdnvLDKTWVQleegrsprrrhsisgsncraeelmpnkrrqsdgFMCTKETEHeeeslssqkydfDQRPQFSANRLEMNRNASVLEVEkrvlrvpnppprpsCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMkrdsrkdssnggvceapnvanVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAvlkhfdwpekkadtlreaafgyrdlkklesevsyykddprvpCDLALKKmvslsekmERTVYALLRTRETLMRNCREFQiptawmlddgiiSKIKLSSVKLAKKYMRRVAMELqskagvekdpAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLFNKK
Low Complexity Region (SEG)
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDkktksqttatskkLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGsrdlfleldslrsllqesKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKrvlrvpnppprpSCGISGGTKEERQAQIpqppplprppppppapKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLFNKK
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************************************************************************************************************IISKIKAEALVLRHT*********GLQMSRLNEVEELAYLRWVNSCLRD***********************************KVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQ******************************************************************************************************************************************VVEFY*********************************IENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLF***
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK************RVPCDLALKKMVSLSEKMER****************REFQIPTAWMLDDGIISKIKLSSVKLAKKYM********************YMLLQGVRFAFRIHQFAGGFDAETMHAFEELR*********
Disordered Region (DISEMBL)
***********KTLKFA**********************RSSWGLKGFTVD***********KKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQV**************SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDEL***************NTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEE***********GSNCRAEELMPNKRRQSDGFMC***************YDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSC****************PPPLPRPPPPPP************VQRAPQVVEFYHSLMK**********GVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLFNKK
Disordered Region (DISPRO)
*********RAKTLKFADQ***********************************************************************SLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSC**************************************RLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRS*RRR*SI*GSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPS*******************PLPRPPPP******************PQ*********K**********************SSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLExxxxxxxxxxxxxxxxxxxxxxxxxxxxPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTSLSEQLAALSVILERKNDNKNAINMGSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNIAHLFNKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	790	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	no	no	0.334	0.262	0.618	1e-94
Q1PEB4	724	Uncharacterized protein A	no	no	0.315	0.343	0.256	6e-09

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  348 bits (892), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 164/265 (61%), Positives = 208/265 (78%), Gaps = 1/265 (0%)

Query: 521 VQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAP-NVANVRSSMIGEIENRSSHLLAIKADV 579
           V RAP++VEFY SLMKR+S+K+ +   +     N +  R++MIGEIENRS+ LLA+KADV
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 580 ATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639
            TQG+FV SL  EV  + + +IED++AFV WLD+EL FLVDERAVLKHFDWPE KAD LR
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query: 640 EAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCR 699
           EAAF Y+DL KLE +V+ + DDP + C+ ALKKM  L EK+E++VYALLRTR+  +   +
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYK 897

Query: 700 EFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFA 759
           EF IP  W+ D G++ KIKLSSV+LAKKYM+RVA EL S +G +KDP  +++LLQGVRFA
Sbjct: 898 EFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFA 957

Query: 760 FRIHQFAGGFDAETMHAFEELRNIA 784
           FR+HQFAGGFDAE+M AFEELR+ A
Sbjct: 958 FRVHQFAGGFDAESMKAFEELRSRA 982

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 28/277 (10%)

Query: 515 KSTTGVVQRAPQVVEFYHSLM-KRDSR------KDSSNG--GVCEAPNVANVRSSM---I 562
           K  T  ++R+ Q+   Y +L  K + R      K +S G   V E   V   RS M   +
Sbjct: 428 KKATSKLRRSAQIANLYWALKGKLEGRGVEGKTKKASKGQNSVAEKSPVKVARSGMADAL 487

Query: 563 GEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDER 622
            E+  RSS+   I+ DV    + +  L   +++   +++++++ F   ++  L  L DE 
Sbjct: 488 AEMTKRSSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDET 547

Query: 623 AVLKHFD-WPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKME 681
            VL  F+ +PEKK + +R A   Y+ L  +  E+  +K +P  P +  L K+     K +
Sbjct: 548 QVLARFEGFPEKKLEVIRTAGALYKKLDGILVELKNWKIEP--PLNDLLDKIERYFNKFK 605

Query: 682 RTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYM------RRVAME 735
             +  + RT++   +  + + I     +D  ++ ++K + V ++   M      RR A E
Sbjct: 606 GEIETVERTKDEDAKMFKRYNIN----IDFEVLVQVKETMVDVSSNCMELALKERREANE 661

Query: 736 LQSKAGVEKDPAMDYM--LLQGVRFAFRIHQFAGGFD 770
            ++K G E     +    L +  +FAF+++ FAGG D
Sbjct: 662 -EAKNGEESKMKEERAKRLWRAFQFAFKVYTFAGGHD 697

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
224115606	794	predicted protein [Populus trichocarpa]	0.992	0.987	0.735	0.0
255586265	791	actin binding protein, putative [Ricinus	0.986	0.984	0.738	0.0
225444169	801	PREDICTED: protein CHUP1, chloroplastic-	0.982	0.968	0.721	0.0
297740902	781	unnamed protein product [Vitis vinifera]	0.956	0.967	0.702	0.0
449433527	787	PREDICTED: protein CHUP1, chloroplastic-	0.983	0.987	0.691	0.0
449490629	787	PREDICTED: LOW QUALITY PROTEIN: protein	0.983	0.987	0.691	0.0
356564055	780	PREDICTED: protein CHUP1, chloroplastic-	0.967	0.979	0.643	0.0
356552350	777	PREDICTED: protein CHUP1, chloroplastic-	0.965	0.981	0.638	0.0
357437461	754	Chloroplast unusual positioning 1A [Medi	0.924	0.968	0.625	0.0
242080449	797	hypothetical protein SORBIDRAFT_07g00245	0.953	0.944	0.559	0.0

>gi|224115606|ref|XP_002317077.1| predicted protein [Populus trichocarpa] gi|222860142|gb|EEE97689.1| predicted protein [Populus trichocarpa]

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/800 (73%), Positives = 668/800 (83%), Gaps = 16/800 (2%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           MR+EN  E ++K +KFADQNQ PK QN K N++ N SK +SSWG   +KGFT DKKTK+Q
Sbjct: 1   MREENTVETKSKAVKFADQNQAPKPQNIKGNNNNNGSKIKSSWGSHIVKGFTADKKTKTQ 60

Query: 58  T-TATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQT-HRR 115
           T T T+K+LPL   SS+ T QKNS+V SHSRVKRSLIGDL CS+  +QVHP +YQ  HRR
Sbjct: 61  TITVTAKRLPLA--SSETTKQKNSLVNSHSRVKRSLIGDLTCSVTGSQVHPKAYQANHRR 118

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           QSSGSRDLF+ELD LRSLLQESKEREFKLQAELSE KRN +V++LERELEA++ E DE+ 
Sbjct: 119 QSSGSRDLFVELDQLRSLLQESKEREFKLQAELSEVKRNGRVVDLERELEARRNEVDELC 178

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235
           +R+G+LE EK+ L EQ+  L +I E++++         SS  NLEMEVVELRRLNKELQM
Sbjct: 179 KRIGVLESEKSGLCEQVNELCLISEKRSEEVLKREGNESSVGNLEMEVVELRRLNKELQM 238

Query: 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295
           +KRNLACK SS+E+QL S A++SESD+++KIKAE  +LRHTNEDL KQVEGLQMSRLNEV
Sbjct: 239 DKRNLACKLSSLESQLASFARSSESDVVAKIKAETSLLRHTNEDLCKQVEGLQMSRLNEV 298

Query: 296 EELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRR 355
           EELAYLRWVNSCLRDEL+NSCST NS+KASSP ++E   E+ GS+  Q+N  LE +   R
Sbjct: 299 EELAYLRWVNSCLRDELRNSCSTMNSDKASSPKSVERSNESAGSISCQSNDYLESNSKMR 358

Query: 356 LSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNK 415
           L FIKK KKWPI  E++ NLECQD    K WV  E+GRSPRRRHSISGS    E+L PN+
Sbjct: 359 LDFIKKLKKWPITDEDLPNLECQD----KNWVHSEDGRSPRRRHSISGSKFCLEDLAPNR 414

Query: 416 RRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLRVPN 473
           RRQSD FMC KE E+E E +SS+KY+ D  QRPQ  AN  E N+    L+VEKR LRVPN
Sbjct: 415 RRQSDVFMCIKEMENEVELVSSEKYELDIMQRPQILANCQETNKIVGPLDVEKRTLRVPN 474

Query: 474 PPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTT-GVVQRAPQVVEFYH 532
           PPPRPSC +S G KEE QAQ+P PPP P PPPPPP PKFS +STT GVVQRAPQVVEFYH
Sbjct: 475 PPPRPSCSVSTGPKEEVQAQVPLPPPPPPPPPPPPPPKFSVRSTTAGVVQRAPQVVEFYH 534

Query: 533 SLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIRE 592
           SLMKRDSRK+SSNGG+CEA +VANVRS+MIGEIENRSSHLLAIKAD+ TQGEFVNSLIRE
Sbjct: 535 SLMKRDSRKESSNGGICEASDVANVRSNMIGEIENRSSHLLAIKADIETQGEFVNSLIRE 594

Query: 593 VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLE 652
           VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFG+ DLKKLE
Sbjct: 595 VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGFSDLKKLE 654

Query: 653 SEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDG 712
           SEVSYYKDDPRVPCDLALKKMV+LSEKME TVY LLRTRE+LMRNC+E QIP+ WMLD+G
Sbjct: 655 SEVSYYKDDPRVPCDLALKKMVALSEKMEHTVYNLLRTRESLMRNCKESQIPSDWMLDNG 714

Query: 713 IISKIKLSSVKLAKKYMRRVAMELQSK--AGVEKDPAMDYMLLQGVRFAFRIHQFAGGFD 770
           IISKIK  SVKLAKKYM+RVA E+QSK  A +EKDPA+DYMLLQGVRFAFRIHQFAGGFD
Sbjct: 715 IISKIKFGSVKLAKKYMKRVATEIQSKAAAALEKDPALDYMLLQGVRFAFRIHQFAGGFD 774

Query: 771 AETMHAFEELRNIAHLFNKK 790
           AETMHAFEELRN+AHL NKK
Sbjct: 775 AETMHAFEELRNLAHLLNKK 794

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586265|ref|XP_002533785.1| actin binding protein, putative [Ricinus communis] gi|223526286|gb|EEF28598.1| actin binding protein, putative [Ricinus communis]

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/802 (73%), Positives = 664/802 (82%), Gaps = 23/802 (2%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKS- 56
           MR+EN  E ++K  KFADQNQ PK+QNTK NS+ N SK RSSWG   +KGFT DKKTKS 
Sbjct: 1   MREENPFETKSKASKFADQNQAPKAQNTKGNSN-NASKLRSSWGSHIVKGFTADKKTKSS 59

Query: 57  QTTA--TSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQT-- 112
            TTA  TSKKLPL    S  TNQKN +V+SHSRVKRSLIGDL+CS+   QVHP++YQ   
Sbjct: 60  HTTAVVTSKKLPLPNTES--TNQKNPLVSSHSRVKRSLIGDLSCSVTAIQVHPHAYQNQT 117

Query: 113 -HRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIEN 171
            HRRQSSGSRDLFLELD LRSLLQESKEREFKLQAE+SE KRN ++LELEREL  KK E 
Sbjct: 118 NHRRQSSGSRDLFLELDHLRSLLQESKEREFKLQAEVSELKRNGRLLELERELAVKKNEV 177

Query: 172 DEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNK 231
           DE+++R+G+LE EKT L EQ+A + +  E+K++         +S  N+EMEVVELRRLNK
Sbjct: 178 DELLQRIGILESEKTVLCEQVAEMCLNSEKKHEEVLKREGNETSMGNMEMEVVELRRLNK 237

Query: 232 ELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291
           ELQMEKRNL+C+ SSME QL S+AKASESDI++KIKAEA  LR TNEDL KQVEGLQMSR
Sbjct: 238 ELQMEKRNLSCRLSSMETQLASVAKASESDILAKIKAEASSLRLTNEDLCKQVEGLQMSR 297

Query: 292 LNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYS 351
           LNEVEELAYLRWVNSCLRDEL+NSCS + S+KAS  N+ E   ++V S    +N+ LEYS
Sbjct: 298 LNEVEELAYLRWVNSCLRDELRNSCSIS-SDKASGLNSAERSNDSVNSF--SSNEYLEYS 354

Query: 352 GGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEEL 411
             +RL+ IKK KKWPI +E++ NLEC D    K WV  EE RSPRRRHSISGS    EEL
Sbjct: 355 SAKRLNLIKKLKKWPITNEDLPNLECPD----KNWVHSEELRSPRRRHSISGSKFSIEEL 410

Query: 412 MPNKRRQSDGFMCTKETEHEEESLSSQKYDF--DQRPQFSANRLEMNRNASVLEVEKRVL 469
           + +KRRQSDGFMC KE E E E LSSQKYDF  DQRPQ   N +E N+  S L+VEKRVL
Sbjct: 411 VSSKRRQSDGFMCIKEVEKETEPLSSQKYDFEMDQRPQMFVNCIENNKIVSSLDVEKRVL 470

Query: 470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTT-GVVQRAPQVV 528
           RVPNPPPRPSC +   TKEE   Q+  PPP P PPPPPP PKFS +S++ GVVQRAPQVV
Sbjct: 471 RVPNPPPRPSCSMPSETKEECSVQVAPPPP-PPPPPPPPPPKFSMRSSSAGVVQRAPQVV 529

Query: 529 EFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNS 588
           EFYHSLMKRDSRK+SSNGGVCEA +VANVRSSMIGEIENRSSHLLAIKADV TQGEFVNS
Sbjct: 530 EFYHSLMKRDSRKESSNGGVCEASDVANVRSSMIGEIENRSSHLLAIKADVETQGEFVNS 589

Query: 589 LIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDL 648
           LIREVNNAV+QNIEDVVAFVKWLDDELGFLVDERAVLKHF+WPEKKADTLREAAFGYRDL
Sbjct: 590 LIREVNNAVFQNIEDVVAFVKWLDDELGFLVDERAVLKHFEWPEKKADTLREAAFGYRDL 649

Query: 649 KKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWM 708
           KKLESEVSYYKDDPR+PCD+ALKKMV+LSEKMER+VY +LRTRE LMRNC EFQIPT WM
Sbjct: 650 KKLESEVSYYKDDPRMPCDVALKKMVTLSEKMERSVYNVLRTREFLMRNCNEFQIPTDWM 709

Query: 709 LDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGG 768
           L++GIISKIK  SVKLAKKYM+RVA E+QSKA +EKDPA+DYMLLQGVRFAFRIHQFAGG
Sbjct: 710 LENGIISKIKFGSVKLAKKYMKRVATEIQSKAALEKDPALDYMLLQGVRFAFRIHQFAGG 769

Query: 769 FDAETMHAFEELRNIAHLFNKK 790
           FDAETMHAFEELRN+AHL NKK
Sbjct: 770 FDAETMHAFEELRNLAHLLNKK 791

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444169|ref|XP_002268607.1| PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera]

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/800 (72%), Positives = 661/800 (82%), Gaps = 24/800 (3%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRS--SWG---LKGFTVDKKTK 55
           MR+EN SENR K+LKFADQNQ       KT+S  NPS+ RS  SWG   +KGF+ DKK K
Sbjct: 1   MREENPSENRVKSLKFADQNQ------GKTSS--NPSRLRSASSWGSHIVKGFSADKKNK 52

Query: 56  SQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRR 115
            QTTA +KK+PLT  SSD+ NQKN +V SHSRVKRSLIGDL+CS+N +QVHP  Y ++R 
Sbjct: 53  LQTTAAAKKVPLT--SSDIVNQKNPLVTSHSRVKRSLIGDLSCSVNASQVHPQLYNSNRT 110

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           +SS  RDLFLELD LRSLLQESKEREFKLQAEL E+KRNP++L+LERELE KK E +E+ 
Sbjct: 111 KSS--RDLFLELDHLRSLLQESKEREFKLQAELLEFKRNPEILDLERELEVKKSEVNELS 168

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKND--NKNAINMGSSSSQ-NLEMEVVELRRLNKE 232
           ++V +LE EKTSLSEQL+ L+ I ER+ +   +  + + S+ SQ  LEMEVVELRRLNKE
Sbjct: 169 QKVRLLESEKTSLSEQLSGLASIAERREELLKREDLEISSAPSQRTLEMEVVELRRLNKE 228

Query: 233 LQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292
           LQ++KR+L+C+ SS E+QL +L+K  ESD ++ I+AEA +LRHTNEDL KQVE LQMSRL
Sbjct: 229 LQLQKRDLSCRLSSTESQLNTLSKVYESDTVANIQAEASLLRHTNEDLCKQVEDLQMSRL 288

Query: 293 NEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSG 352
           NEVEEL YLRWVNSCLR+EL+NSCS TNS+K SSPN+IE   E+  S   Q +  LEYS 
Sbjct: 289 NEVEELVYLRWVNSCLRNELRNSCSVTNSDKTSSPNSIEGSRESDSSFSCQTDDSLEYSS 348

Query: 353 GRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
            +RL+ IKK KKWPI SE++ NL+C DN+L+K+WV  EEGRSPRRRHSISGS C AE+L+
Sbjct: 349 IKRLNLIKKLKKWPIISEDLPNLDCPDNLLEKSWVDPEEGRSPRRRHSISGSKCSAEDLV 408

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
            +KRRQSDGFMC KE E E E L SQKY+    Q+PQ   N  E  +  + L+VEKR LR
Sbjct: 409 QSKRRQSDGFMCPKEMEKEAEPLVSQKYELGIVQKPQLWGNCQETGKFMASLDVEKRALR 468

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPS  +S G KE   AQIP PPP   PPPPPP PKFS +STTG+VQRAPQVVEF
Sbjct: 469 IPNPPPRPSGALSSGPKEMVLAQIPPPPP--PPPPPPPPPKFSARSTTGIVQRAPQVVEF 526

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNGG+ + P+VANVRS+MIGEIENRSS+LLAIKADV TQGEFVNSLI
Sbjct: 527 YHSLMKRDSRKDSSNGGIYDTPDVANVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLI 586

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK
Sbjct: 587 REVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 646

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLD 710
           LESEVSYYKDDPRVPCD+ALKKMV+LSEKMER+VY L RTRE+LMRNC+EFQIPT WMLD
Sbjct: 647 LESEVSYYKDDPRVPCDIALKKMVALSEKMERSVYNLFRTRESLMRNCKEFQIPTDWMLD 706

Query: 711 DGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFD 770
           +GII+KIK  SVKLAKKYMRRVAMELQSK   EKDPAMDYMLLQGVRFAFRIHQFAGGFD
Sbjct: 707 NGIINKIKFGSVKLAKKYMRRVAMELQSKGAFEKDPAMDYMLLQGVRFAFRIHQFAGGFD 766

Query: 771 AETMHAFEELRNIAHLFNKK 790
            ETMHAFEELRN+AHL NKK
Sbjct: 767 VETMHAFEELRNLAHLLNKK 786

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740902|emb|CBI31084.3| unnamed protein product [Vitis vinifera]

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/800 (70%), Positives = 646/800 (80%), Gaps = 44/800 (5%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRS--SWG---LKGFTVDKKTK 55
           MR+EN SENR K+LKFADQNQ       KT+S  NPS+ RS  SWG   +KGF+ DKK K
Sbjct: 1   MREENPSENRVKSLKFADQNQ------GKTSS--NPSRLRSASSWGSHIVKGFSADKKNK 52

Query: 56  SQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRR 115
            QTTA +KK+PLT  SSD+ NQKN +V SHSRVKRSLIGDL+CS+N +QVHP  Y ++R 
Sbjct: 53  LQTTAAAKKVPLT--SSDIVNQKNPLVTSHSRVKRSLIGDLSCSVNASQVHPQLYNSNRT 110

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           +SS  RDLFLELD LRSLLQESKEREFKLQAEL E+KRNP++L+LERELE KK E +E+ 
Sbjct: 111 KSS--RDLFLELDHLRSLLQESKEREFKLQAELLEFKRNPEILDLERELEVKKSEVNELS 168

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKND--NKNAINMGSSSSQ-NLEMEVVELRRLNKE 232
           ++V +LE EKTSLSEQL+ L+ I ER+ +   +  + + S+ SQ  LEMEVVELRRLNKE
Sbjct: 169 QKVRLLESEKTSLSEQLSGLASIAERREELLKREDLEISSAPSQRTLEMEVVELRRLNKE 228

Query: 233 LQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292
           LQ++KR+L+C+ SS E+QL +L+K  ESD ++ I+AEA +LRHTNEDL KQVE LQMSRL
Sbjct: 229 LQLQKRDLSCRLSSTESQLNTLSKVYESDTVANIQAEASLLRHTNEDLCKQVEDLQMSRL 288

Query: 293 NEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSG 352
           NEVEEL YLRWVNSCLR+EL+NSCS TNS+K SSPN+IE   E+  S   Q +  LEYS 
Sbjct: 289 NEVEELVYLRWVNSCLRNELRNSCSVTNSDKTSSPNSIEGSRESDSSFSCQTDDSLEYSS 348

Query: 353 GRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
            +RL+ IKK KKWPI SE++ NL+C DN+L+K+WV  EEGRSPRRRHSISGS C AE+L+
Sbjct: 349 IKRLNLIKKLKKWPIISEDLPNLDCPDNLLEKSWVDPEEGRSPRRRHSISGSKCSAEDLV 408

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
            +KRRQSDGFMC KE E E E L SQKY+    Q+PQ   N  E  +  + L+VEKR LR
Sbjct: 409 QSKRRQSDGFMCPKEMEKEAEPLVSQKYELGIVQKPQLWGNCQETGKFMASLDVEKRALR 468

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPS  +S G KE                       FS +STTG+VQRAPQVVEF
Sbjct: 469 IPNPPPRPSGALSSGPKE----------------------MFSARSTTGIVQRAPQVVEF 506

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNGG+ + P+VANVRS+MIGEIENRSS+LLAIKADV TQGEFVNSLI
Sbjct: 507 YHSLMKRDSRKDSSNGGIYDTPDVANVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLI 566

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK
Sbjct: 567 REVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 626

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLD 710
           LESEVSYYKDDPRVPCD+ALKKMV+LSEKMER+VY L RTRE+LMRNC+EFQIPT WMLD
Sbjct: 627 LESEVSYYKDDPRVPCDIALKKMVALSEKMERSVYNLFRTRESLMRNCKEFQIPTDWMLD 686

Query: 711 DGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFD 770
           +GII+KIK  SVKLAKKYMRRVAMELQSK   EKDPAMDYMLLQGVRFAFRIHQFAGGFD
Sbjct: 687 NGIINKIKFGSVKLAKKYMRRVAMELQSKGAFEKDPAMDYMLLQGVRFAFRIHQFAGGFD 746

Query: 771 AETMHAFEELRNIAHLFNKK 790
            ETMHAFEELRN+AHL NKK
Sbjct: 747 VETMHAFEELRNLAHLLNKK 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433527|ref|XP_004134549.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/800 (69%), Positives = 640/800 (80%), Gaps = 23/800 (2%)

Query: 1   MRDENASENRAKTLKFADQNQPPK--SQNTKTNSSINPSKPR--SSWG---LKGFTVDKK 53
           M+++N  E R K  +FADQNQ PK  +QN    S+ N SK R  SSWG   +KGF+ DK+
Sbjct: 1   MKEDNPLEIRGKPSRFADQNQNPKCLNQNNAKGSTGNGSKLRAASSWGSHIVKGFSTDKR 60

Query: 54  TKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTH 113
           TK+Q+    KK P   N SD+ NQK   V SHSR+KRS+IGDLACS NPAQVHP SYQTH
Sbjct: 61  TKAQSNLQPKKAPPLGN-SDLVNQKEKFVPSHSRIKRSIIGDLACSANPAQVHPQSYQTH 119

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
           RRQS  SRDLF+ELD LRSLL ESK+REF+LQ EL+E KRN +  ELERELE KK+E D 
Sbjct: 120 RRQS--SRDLFVELDQLRSLLNESKQREFELQNELAELKRNTRNYELERELEEKKVELDS 177

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           + ++V +LE+++ +LSEQL  L  + E++ + + A         N+E+EVVELRRLNKEL
Sbjct: 178 LAKKVSVLEEDRRALSEQLVTLPSVSEKQEEQQTAPG-------NVEVEVVELRRLNKEL 230

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293
           Q++KRNLAC+ SS+E++L  LAK SES+ ++KIKAE  +LRHTNEDL KQVEGLQMSRLN
Sbjct: 231 QLQKRNLACRLSSVESELACLAKNSESEAVAKIKAEVSLLRHTNEDLCKQVEGLQMSRLN 290

Query: 294 EVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGG 353
           EVEELAYLRWVNSCLR EL+NS  + NS   SSP  +E   E +GSL +Q  + +EYS  
Sbjct: 291 EVEELAYLRWVNSCLRSELRNSSPSANSGSPSSPQPVERSSEAIGSLSSQ-KEYMEYSSA 349

Query: 354 RRLSFIKKFKKWPIASEEMSNLECQD-NVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
           +R++ IKK KKWPI  E++SNL+C D N+LDK WV  EEGRSPRRRHSISG+ C  EEL 
Sbjct: 350 KRINLIKKLKKWPITDEDLSNLDCSDNNLLDKNWVDTEEGRSPRRRHSISGAKCWPEELE 409

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
           PNKRRQSDGFMC KE E + + LSSQKYD    QRP    N  E NRN + L+VEKR LR
Sbjct: 410 PNKRRQSDGFMCAKEMEKDVDPLSSQKYDLGVIQRPHVLGNCHETNRNFASLDVEKRALR 469

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPSC IS   KEE +AQ+P   PLP PPPPPP PKFS +S TG+VQRAPQVVEF
Sbjct: 470 IPNPPPRPSCSISSEPKEENRAQVPP--PLPPPPPPPPLPKFSVRSATGMVQRAPQVVEF 527

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNG +C  P+V+NVRSSMIGEIENRSSHLLAIKAD+ TQGEFVNSLI
Sbjct: 528 YHSLMKRDSRKDSSNGTICNVPDVSNVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLI 587

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVY  IED+V FVKWLDDEL FLVDERAVLKHFDWPE+KADTLREAAFGYRDLKK
Sbjct: 588 REVNNAVYLKIEDIVEFVKWLDDELCFLVDERAVLKHFDWPERKADTLREAAFGYRDLKK 647

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLD 710
           LE E+S YKDDPR+PCD+ALKKMV+LSEKMER+ Y LLR RE+LMRNC+EFQIPT WMLD
Sbjct: 648 LECEISAYKDDPRLPCDIALKKMVALSEKMERSSYNLLRMRESLMRNCKEFQIPTDWMLD 707

Query: 711 DGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFD 770
           +GIISKIKL SVKLAK YM+RVAMELQSKA  EKDPAMDYMLLQGVRFAFRIHQFAGGFD
Sbjct: 708 NGIISKIKLGSVKLAKMYMKRVAMELQSKASSEKDPAMDYMLLQGVRFAFRIHQFAGGFD 767

Query: 771 AETMHAFEELRNIAHLFNKK 790
           AETMHAFE+LRN+A+L NKK
Sbjct: 768 AETMHAFEDLRNLANLLNKK 787

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490629|ref|XP_004158660.1| PREDICTED: LOW QUALITY PROTEIN: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/800 (69%), Positives = 640/800 (80%), Gaps = 23/800 (2%)

Query: 1   MRDENASENRAKTLKFADQNQPPK--SQNTKTNSSINPSKPR--SSWG---LKGFTVDKK 53
           M+++N  E R K  +FADQNQ PK  +QN    S+ N SK R  SSWG   +KGF+ DK+
Sbjct: 1   MKEDNPLEIRGKPSRFADQNQNPKCLNQNNAKGSTGNGSKLRAASSWGSHIVKGFSTDKR 60

Query: 54  TKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTH 113
           TK+Q+    KK P   N SD+ NQK   V SHSR+KRS+IGDLACS NPAQVHP SYQTH
Sbjct: 61  TKAQSNLQPKKAPPLGN-SDLVNQKEKFVPSHSRIKRSIIGDLACSANPAQVHPQSYQTH 119

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
           RRQS  SRDLF+ELD LRSLL ESK+REF+LQ EL+E KRN +  ELERELE KK+E D 
Sbjct: 120 RRQS--SRDLFVELDQLRSLLNESKQREFELQNELAELKRNTRNYELERELEEKKVELDS 177

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           + ++V +LE+++ +LSEQL  L  + E++ + + A         N+E+EVVELRRLNKEL
Sbjct: 178 LAKKVSVLEEDRRALSEQLVTLPSVSEKQEEQQTAPG-------NVEVEVVELRRLNKEL 230

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293
           Q++KRNLAC+ SS+E++L  LAK SES+ ++KIKAE  +LRHTNEDL KQVEGLQMSRLN
Sbjct: 231 QLQKRNLACRLSSVESELACLAKNSESEAVAKIKAEVSLLRHTNEDLCKQVEGLQMSRLN 290

Query: 294 EVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGG 353
           EVEELAYLRWVNSCLR EL+NS  + NS   SSP  +E   E +GSL +Q  + +EYS  
Sbjct: 291 EVEELAYLRWVNSCLRSELRNSSPSANSGSPSSPQPVERSSEAIGSLSSQ-KEYMEYSSA 349

Query: 354 RRLSFIKKFKKWPIASEEMSNLECQD-NVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
           +R++ IKK KKWPI  E++SNL+C D N+LDK WV  EEGRSPRRRHSISG+ C  EEL 
Sbjct: 350 KRINLIKKLKKWPITDEDLSNLDCSDNNLLDKNWVDTEEGRSPRRRHSISGAKCWPEELE 409

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
           PNKRRQSDGFMC KE E + + LSSQKYD    QRP    N  E NRN + L+VEKR LR
Sbjct: 410 PNKRRQSDGFMCAKEMEKDVDPLSSQKYDLGVIQRPHVWXNCHETNRNFASLDVEKRALR 469

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPSC IS   KEE +AQ+P   PLP PPPPPP PKFS +S TG+VQRAPQVVEF
Sbjct: 470 IPNPPPRPSCSISSEPKEENRAQVPP--PLPPPPPPPPLPKFSVRSATGMVQRAPQVVEF 527

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNG +C  P+V+NVRSSMIGEIENRSSHLLAIKAD+ TQGEFVNSLI
Sbjct: 528 YHSLMKRDSRKDSSNGTICNVPDVSNVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLI 587

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVY  IED+V FVKWLDDEL FLVDERAVLKHFDWPE+KADTLREAAFGYRDLKK
Sbjct: 588 REVNNAVYLKIEDIVEFVKWLDDELCFLVDERAVLKHFDWPERKADTLREAAFGYRDLKK 647

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLD 710
           LE E+S YKDDPR+PCD+ALKKMV+LSEKMER+ Y LLR RE+LMRNC+EFQIPT WMLD
Sbjct: 648 LECEISAYKDDPRLPCDIALKKMVALSEKMERSSYNLLRMRESLMRNCKEFQIPTDWMLD 707

Query: 711 DGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFD 770
           +GIISKIKL SVKLAK YM+RVAMELQSKA  EKDPAMDYMLLQGVRFAFRIHQFAGGFD
Sbjct: 708 NGIISKIKLGSVKLAKMYMKRVAMELQSKASSEKDPAMDYMLLQGVRFAFRIHQFAGGFD 767

Query: 771 AETMHAFEELRNIAHLFNKK 790
           AETMHAFE+LRN+A+L NKK
Sbjct: 768 AETMHAFEDLRNLANLLNKK 787

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564055|ref|XP_003550272.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/804 (64%), Positives = 619/804 (76%), Gaps = 40/804 (4%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           M++EN SENR+K  KF+DQNQ PK QNTK  +  N +K R  WG   +KGF+ DKKTKS 
Sbjct: 1   MKEENPSENRSKASKFSDQNQAPKPQNTKGANLNNNNKTRL-WGAHIVKGFSADKKTKS- 58

Query: 58  TTATSKKLPL-----TTNSSDVTNQKNS----IVASHSRVKRSLIGDLACSMNPAQVHPN 108
               SKKL         + + VTNQ NS    + +SHSRVKRSLIGDL+CS+NPAQVHP+
Sbjct: 59  --FASKKLTSSTTTTAISENVVTNQNNSNKPFVPSSHSRVKRSLIGDLSCSINPAQVHPH 116

Query: 109 SYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKK 168
           ++ THRRQSS   DLF ELD +R LLQESKERE KL AELSE ++             K 
Sbjct: 117 AFPTHRRQSST--DLFTELDHMRGLLQESKERESKLHAELSECRK-------------KM 161

Query: 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRR 228
            E DE+V+RVG+LE EK +L+EQL A     E K + +    +     QNLE+EVVELRR
Sbjct: 162 TEVDEVVKRVGLLEQEKATLTEQLGAALSCEEVKGEEEQHKEV---KVQNLELEVVELRR 218

Query: 229 LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288
           LNKELQM+KRNL+C+ SS+E QL    K+SESD+++KIKAEA +LR TNEDL KQVEGLQ
Sbjct: 219 LNKELQMQKRNLSCRLSSLEAQLACPNKSSESDVVAKIKAEASLLRLTNEDLCKQVEGLQ 278

Query: 289 MSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPN-QNNKV 347
           +SRLNEVEELAYLRWVNSCLR+EL+N+CS  +S+K SSP+++    ++  S  + Q N+ 
Sbjct: 279 ISRLNEVEELAYLRWVNSCLRNELKNTCSALDSDKPSSPHSVVSSSDDCVSSFSDQTNRY 338

Query: 348 LEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCR 407
                  R + +KK KKWPI S+++S +ECQ ++++K  ++ + G SPRRRHSISGSN  
Sbjct: 339 SNCGSANRFNMVKKPKKWPITSDDLSQVECQGSLIEKNRIESDVGGSPRRRHSISGSNYS 398

Query: 408 AEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVE 465
            EE+  +KRRQSD F+C+KE E E  +LS Q+   +  QRPQ+ +N  E N+     +VE
Sbjct: 399 EEEVSLSKRRQSDCFVCSKEMEKESVALSVQQSGLEIVQRPQYFSNCQEANKLLVSSDVE 458

Query: 466 KRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAP 525
           KR LR+PNPPPRPSC IS  TK+E  AQ+P PP    PPPPPP   F+ +S    V+RAP
Sbjct: 459 KRALRIPNPPPRPSCSISIKTKQETSAQVPLPP---PPPPPPPPMNFASRSNMASVKRAP 515

Query: 526 QVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEF 585
           QVVE YHSLMKRDSRKDSSNGG+ +AP+V++VRSSMIGEIENRSSHLLAIKAD+ TQGEF
Sbjct: 516 QVVELYHSLMKRDSRKDSSNGGLSDAPDVSDVRSSMIGEIENRSSHLLAIKADIETQGEF 575

Query: 586 VNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGY 645
           VNSLIREVN+AVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGY
Sbjct: 576 VNSLIREVNDAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGY 635

Query: 646 RDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPT 705
           +DLKKLESEVS YKDDPR+P D+ALKKMV+LSEKMERTVY LLRTR++LMR+ +EF+IP 
Sbjct: 636 QDLKKLESEVSSYKDDPRLPGDIALKKMVALSEKMERTVYNLLRTRDSLMRHSKEFKIPI 695

Query: 706 AWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQF 765
            WMLD+GII KIKLSSVKLAKKYM+RVAMELQ K+ +EKDPAMDYMLLQGVRFAFRIHQF
Sbjct: 696 EWMLDNGIIGKIKLSSVKLAKKYMKRVAMELQVKSALEKDPAMDYMLLQGVRFAFRIHQF 755

Query: 766 AGGFDAETMHAFEELRNIAHLFNK 789
           AGGFDAETMHAFEELRN+A L NK
Sbjct: 756 AGGFDAETMHAFEELRNLASLLNK 779

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552350|ref|XP_003544531.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/802 (63%), Positives = 617/802 (76%), Gaps = 39/802 (4%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           MR+EN SENR+K  KF+DQNQ PK QNTK  +  N S+ R  WG   +KGF+ DKKTK  
Sbjct: 1   MREENPSENRSKASKFSDQNQAPKPQNTKGANPNNNSRTRL-WGAHIVKGFSADKKTK-- 57

Query: 58  TTATSKKLPLT----TNSSDVTNQKNS---IVASHSRVKRSLIGDLACSMNPAQVHPNSY 110
               SKKL  +     + + VTNQ N+   + +S+SRVKRSLIGDL+CS+NPAQVHP+++
Sbjct: 58  -PLASKKLTSSTTTTISENVVTNQNNNKPFVPSSNSRVKRSLIGDLSCSINPAQVHPHAF 116

Query: 111 QTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIE 170
            THRRQSS   DLF ELD +R LLQESKERE KL AEL+E ++  KV E+          
Sbjct: 117 PTHRRQSST--DLFTELDHMRGLLQESKERESKLNAELAECRK--KVSEV---------- 162

Query: 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLN 230
            DE+++RV +LE EK  L+EQL AL+    +  + ++         QNLE+EVVELRRLN
Sbjct: 163 -DEVMKRVDLLEQEKAILTEQLGALTCEEVKGEEEQHK----EVKVQNLELEVVELRRLN 217

Query: 231 KELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290
           KELQM+KRNL+C+ SS++ QL    K+SESD+++KIKAEA +LR TNEDL KQVEGLQ+S
Sbjct: 218 KELQMQKRNLSCRLSSLDAQLACPNKSSESDVVAKIKAEASLLRLTNEDLCKQVEGLQIS 277

Query: 291 RLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVEN-VGSLPNQNNKVLE 349
           RLNEVEELAYLRWVNSCLR+EL+N+CS  NS+K SSP+++     + V S  +Q  +   
Sbjct: 278 RLNEVEELAYLRWVNSCLRNELKNTCSALNSDKPSSPHSVVSSSGDCVSSFSDQATRYSN 337

Query: 350 YSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAE 409
                R + +KK KKWPI S+ +S +E Q +++ K W++ + G SPRRRHSISGSN   E
Sbjct: 338 CGSENRFNMVKKPKKWPITSDHLSQVEFQGSLIRKNWIESDVGGSPRRRHSISGSNYSEE 397

Query: 410 ELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKR 467
           E++ +KRRQSD F+C+KE E E   LS Q+   +  QRPQ   N  E N+     +VEKR
Sbjct: 398 EVVLSKRRQSDCFVCSKEMEKESVPLSVQQSGLEIVQRPQHFGNFQEANKLLVSSDVEKR 457

Query: 468 VLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQV 527
            LR+PNPPPRPSC IS  TK+E  AQ+P PPP P PPPP  +   + +S T +V+R PQV
Sbjct: 458 ALRIPNPPPRPSCSISSKTKQETSAQVPPPPPPPPPPPPMNS---ASRSNTTMVKREPQV 514

Query: 528 VEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVN 587
           VE YHSLMKRDSRKDSSNGG+ +AP+VA+VRSSMIGEIENRSSHLLAIKAD+ TQGEFVN
Sbjct: 515 VELYHSLMKRDSRKDSSNGGLSDAPDVADVRSSMIGEIENRSSHLLAIKADIETQGEFVN 574

Query: 588 SLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRD 647
           SLIREVNNAVYQNI+DVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGY+D
Sbjct: 575 SLIREVNNAVYQNIDDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYQD 634

Query: 648 LKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAW 707
           LKKLESEVS YKDDPR+PCD+ LKKMV+LSEKMERTVY LLRTR+ LMR+C+EF+IP  W
Sbjct: 635 LKKLESEVSSYKDDPRLPCDIVLKKMVALSEKMERTVYNLLRTRDLLMRHCKEFKIPIEW 694

Query: 708 MLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAG 767
           MLD+GII KIKLSSVKLAKKYM+RVA+ELQ+K+ +EKDPAMDYMLLQGVRFAFRIHQFAG
Sbjct: 695 MLDNGIIGKIKLSSVKLAKKYMKRVAVELQAKSALEKDPAMDYMLLQGVRFAFRIHQFAG 754

Query: 768 GFDAETMHAFEELRNIAHLFNK 789
           GFDAETMHAFEELRN+A L NK
Sbjct: 755 GFDAETMHAFEELRNLASLLNK 776

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437461|ref|XP_003589006.1| Chloroplast unusual positioning 1A [Medicago truncatula] gi|355478054|gb|AES59257.1| Chloroplast unusual positioning 1A [Medicago truncatula]

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/801 (62%), Positives = 598/801 (74%), Gaps = 71/801 (8%)

Query: 5   NASENRAKTLKFADQNQPPKSQNTKTNSSINP--SKPRSSWG---LKGFTVDKKTKSQTT 59
           N SEN+ K  KF+DQNQPPK Q TKT +  N   SKPR  WG   +KGF+ DKKTK   T
Sbjct: 8   NPSENKTKVSKFSDQNQPPKLQTTKTTNPNNNNHSKPRL-WGAHIVKGFSADKKTKQLPT 66

Query: 60  ATSKKLPLTTNSSDVTNQKN--SIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQS 117
              +     T S  VTNQKN    V  HSRVKRSL+GDL+CS    QVHP+++ THRRQS
Sbjct: 67  KKQQNTTTITTSDVVTNQKNVNPFVPPHSRVKRSLMGDLSCS----QVHPHAFPTHRRQS 122

Query: 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRR 177
           S   DLF ELD +RSLLQESKERE KL AEL E ++N             + E DE+V++
Sbjct: 123 ST--DLFTELDHMRSLLQESKEREAKLNAELVECRKN-------------QSEVDELVKK 167

Query: 178 VGMLEDEKTSLSEQLAALS--VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235
           V +LE+EK+ LSEQL ALS    LER+ ++K+       S+QNLE+EVVELRRLNKEL M
Sbjct: 168 VALLEEEKSGLSEQLVALSRSCGLERQEEDKDG------STQNLELEVVELRRLNKELHM 221

Query: 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295
           +KRNL C+ SSME+QL+    +SESDI++K KAEA +LR TNEDLSKQVEGLQ SRLNEV
Sbjct: 222 QKRNLTCRLSSMESQLSCSDNSSESDIVAKFKAEASLLRLTNEDLSKQVEGLQTSRLNEV 281

Query: 296 EELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRR 355
           EELAYLRWVNSCLR EL+N+CST +S+K SSP ++     +     + ++   +      
Sbjct: 282 EELAYLRWVNSCLRTELKNTCSTLDSDKLSSPQSVVSSSGD-----SISSFSDQCGSANS 336

Query: 356 LSFIKKFKKWPI-ASEEMSNLECQDN-VLDKTWVQ-LEEGRSPRRRHSISGSNCRAEEL- 411
            + +KK KKWPI +S+++S +EC +N ++DK W++ + EG S RRRHSISGSN   EE+ 
Sbjct: 337 FNLVKKPKKWPITSSDQLSQVECTNNSIIDKNWIESISEG-SNRRRHSISGSNSSEEEVS 395

Query: 412 MPNKRRQS---DGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRV 468
           + +KRRQS   D F C KE E E   +          P F               +EKR 
Sbjct: 396 VLSKRRQSNCFDSFECLKEIEKESVPM----------PLF----------VQQCALEKRA 435

Query: 469 LRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVV 528
           LR+PNPPPRPSC IS  TK+E  AQ+  PP    PPPPPP   F+ +  T +V+RAPQVV
Sbjct: 436 LRIPNPPPRPSCSISSKTKQECSAQVQPPP---PPPPPPPPMSFASRGNTAMVKRAPQVV 492

Query: 529 EFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNS 588
           E YHSLMKRDSR+DSS+GG+ +AP+VA+VRSSMIGEIENRSSHLLAIKAD+ TQGEFVNS
Sbjct: 493 ELYHSLMKRDSRRDSSSGGLSDAPDVADVRSSMIGEIENRSSHLLAIKADIETQGEFVNS 552

Query: 589 LIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDL 648
           LIREVN+AVY+NI+DVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGY+DL
Sbjct: 553 LIREVNDAVYENIDDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYQDL 612

Query: 649 KKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWM 708
           KKLESEVS YKDDPR+PCD+ALKKMV+LSEKMERTVY LLRTR++LMRNC+EFQIP  WM
Sbjct: 613 KKLESEVSSYKDDPRLPCDIALKKMVALSEKMERTVYTLLRTRDSLMRNCKEFQIPVEWM 672

Query: 709 LDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFRIHQFAGG 768
           LD+GII KIKL SVKLAKKYM+RVA+E+Q+K+  +KDPAMDYM+LQGVRFAFRIHQFAGG
Sbjct: 673 LDNGIIGKIKLGSVKLAKKYMKRVAIEVQTKSAFDKDPAMDYMVLQGVRFAFRIHQFAGG 732

Query: 769 FDAETMHAFEELRNIAHLFNK 789
           FDAETMHAFEELRN+A L NK
Sbjct: 733 FDAETMHAFEELRNLASLLNK 753

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080449|ref|XP_002444993.1| hypothetical protein SORBIDRAFT_07g002450 [Sorghum bicolor] gi|241941343|gb|EES14488.1| hypothetical protein SORBIDRAFT_07g002450 [Sorghum bicolor]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/812 (55%), Positives = 559/812 (68%), Gaps = 59/812 (7%)

Query: 14  LKFADQNQPPKSQ-NTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQTTATSKKLPLTT 69
           + F +Q +P +S+ ++K+NSS    K  SSWG   +KGFT DKKTK      SKK PL  
Sbjct: 5   IMFDNQTKPCRSRVDSKSNSSSLKPKFGSSWGSQIVKGFTADKKTKKTAAIASKKPPLA- 63

Query: 70  NSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDS 129
           N  +V NQ N  +  HSRVKRSLIGD  CS   AQVHP+ +  H  +S  S DLFLELD 
Sbjct: 64  NVENV-NQTNQQIPYHSRVKRSLIGDFPCSPAGAQVHPHVFDCHNIRSPASHDLFLELDH 122

Query: 130 LRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189
           LR  L+ESKERE  LQ+EL + + NPKV ELE+EL++ + E D + R    LE EKT++S
Sbjct: 123 LREQLRESKERELALQSELRQCRENPKVSELEKELDSMRDEVDRLARLKTSLEAEKTNIS 182

Query: 190 EQLAALSVILERKNDNKN---------AINMGSSSSQNLEMEVVELRRLNKELQMEKRNL 240
           EQL+ALS ++E   +N           ++N  ++ S+NLE EVVELRRLNKELQ +KRNL
Sbjct: 183 EQLSALSSMVEHHEENVRLDGHGNRIPSVNGDNTPSENLEFEVVELRRLNKELQFQKRNL 242

Query: 241 ACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300
           A K SS E++L  L K +ESDI++K++AEA +LRHTN +LSKQVEGLQMSRL EVEELAY
Sbjct: 243 AIKLSSAESKLAGLEKNAESDIVAKVQAEASLLRHTNANLSKQVEGLQMSRLTEVEELAY 302

Query: 301 LRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIK 360
           LRW+NSCLR EL NS     +      N +    E  G   +  N   E S   + S  +
Sbjct: 303 LRWINSCLRHELCNSDQAARAMTDIDCNGVMAFNEGDGGEGDAKNA--EDSSDIKFSIAE 360

Query: 361 KFKKWPIASEEMSNLECQ----DNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKR 416
           + K+W       ++  CQ    + +LD+ W++  E RSP RRHS+ G    A++    KR
Sbjct: 361 RIKQW-----SQNDKSCQASKKEALLDRAWIEAAEARSPTRRHSLGGPKGCAQDFNIIKR 415

Query: 417 RQSDGFM-----------CTKE-TEHEEESLSSQKYDF--DQRPQFSANRLEMNRNASVL 462
           RQSD F+           C K+ T  E+  L   KYDF   +  +F  ++ E+ + +  L
Sbjct: 416 RQSDTFISLLDATDESFACNKDPTIREKRDLLVDKYDFGRSESSRFVLSKPEVCK-SQCL 474

Query: 463 EVEKRVLRVPNPPPRPSCGIS------GGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKS 516
           +VEKR LR+PNPPPRPS  +S      G T    +   P P            PKFS KS
Sbjct: 475 DVEKRALRIPNPPPRPSVSVSNSGPSNGSTVNPPRPPPPPP-----------PPKFSSKS 523

Query: 517 TTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIK 576
           T GV++RAPQV E YHSLM+RD++KD+S+GG+CEA N ANVRSSMIGEIENRSSHL AIK
Sbjct: 524 T-GVMKRAPQVAELYHSLMRRDTKKDTSSGGICEAANSANVRSSMIGEIENRSSHLQAIK 582

Query: 577 ADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD 636
           ADV TQGEFV SLI+EV +A Y++IEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD
Sbjct: 583 ADVETQGEFVKSLIKEVTSAAYKDIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD 642

Query: 637 TLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMR 696
           TLREAAFGY+DLKKLESEVS YKDDPR+PC++ALKKMV+LSEK ER VY LLRTRE +MR
Sbjct: 643 TLREAAFGYQDLKKLESEVSNYKDDPRLPCEIALKKMVTLSEKTERGVYNLLRTREAMMR 702

Query: 697 NCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGV 756
            C+EF IPT WMLD+ +ISKIK +SVKLAK YM+RVAMELQ    + KDPA++YMLLQ V
Sbjct: 703 QCKEFNIPTDWMLDNNLISKIKFASVKLAKMYMKRVAMELQYMGPLNKDPALEYMLLQAV 762

Query: 757 RFAFRIHQFAGGFDAETMHAFEELRNIAHLFN 788
           RFAFR+HQFAGGFD ETM AFEELRN+ H+ N
Sbjct: 763 RFAFRMHQFAGGFDPETMDAFEELRNLVHVRN 794

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.334	0.262	0.618	1.8e-116
TAIR|locus:2831359	642	AT4G18570 [Arabidopsis thalian	0.331	0.408	0.620	1.6e-89
TAIR|locus:2007755	558	AT1G48280 "AT1G48280" [Arabido	0.329	0.465	0.519	7.5e-76
TAIR|locus:2007477	392	AT1G07120 "AT1G07120" [Arabido	0.329	0.663	0.465	2.9e-60
TAIR|locus:2034091	573	AR791 "AT1G52080" [Arabidopsis	0.120	0.165	0.402	2.2e-09
ASPGD|ASPL0000038802	1207	pcpA [Emericella nidulans (tax	0.384	0.251	0.222	4.3e-08
UNIPROTKB|F1NCD4	1335	MYH9 "Myosin-9" [Gallus gallus	0.363	0.214	0.217	1.3e-07
UNIPROTKB|P14105	1959	MYH9 "Myosin-9" [Gallus gallus	0.363	0.146	0.217	3.8e-07
ZFIN|ZDB-GENE-041111-205	2861	cenpf "centromere protein F, (	0.353	0.097	0.216	5.1e-06
CGD|CAL0001468	895	SYS3 [Candida albicans (taxid:	0.384	0.339	0.225	1.1e-05

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
 Identities = 164/265 (61%), Positives = 208/265 (78%)

Query:   521 VQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAP-NVANVRSSMIGEIENRSSHLLAIKADV 579
             V RAP++VEFY SLMKR+S+K+ +   +     N +  R++MIGEIENRS+ LLA+KADV
Sbjct:   718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query:   580 ATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639
              TQG+FV SL  EV  + + +IED++AFV WLD+EL FLVDERAVLKHFDWPE KAD LR
Sbjct:   778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query:   640 EAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCR 699
             EAAF Y+DL KLE +V+ + DDP + C+ ALKKM  L EK+E++VYALLRTR+  +   +
Sbjct:   838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYK 897

Query:   700 EFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFA 759
             EF IP  W+ D G++ KIKLSSV+LAKKYM+RVA EL S +G +KDP  +++LLQGVRFA
Sbjct:   898 EFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFA 957

Query:   760 FRIHQFAGGFDAETMHAFEELRNIA 784
             FR+HQFAGGFDAE+M AFEELR+ A
Sbjct:   958 FRVHQFAGGFDAESMKAFEELRSRA 982

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 1.6e-89, Sum P(3) = 1.6e-89
 Identities = 167/269 (62%), Positives = 204/269 (75%)

Query:   521 VQRAPQVVEFYHSLMKRDS---RKDSSNGGVCEAPNV-ANVRS-SMIGEIENRSSHLLAI 575
             V+R P+VVEFYHSLM+RDS   R+DS+ GG   A  + AN  +  MIGEIENRS +LLAI
Sbjct:   353 VRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLAI 412

Query:   576 KADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKA 635
             K DV TQG+F+  LI+EV NA + +IEDVV FVKWLDDEL +LVDERAVLKHF+WPE+KA
Sbjct:   413 KTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKA 472

Query:   636 DTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLM 695
             D LREAAF Y DLKKL SE S +++DPR     ALKKM +L EK+E  VY+L R RE+  
Sbjct:   473 DALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLSRMRESAA 532

Query:   696 RNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQG 755
                + FQIP  WML+ GI S+IKL+SVKLA KYM+RV+ EL++  G    P  + +++QG
Sbjct:   533 TKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEG--GGPEEEELIVQG 590

Query:   756 VRFAFRIHQFAGGFDAETMHAFEELRNIA 784
             VRFAFR+HQFAGGFDAETM AFEELR+ A
Sbjct:   591 VRFAFRVHQFAGGFDAETMKAFEELRDKA 619

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
 Identities = 135/260 (51%), Positives = 187/260 (71%)

Query:   522 QRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVAT 581
             Q++P V + +  L K+D+ ++ S         V +  +S++GEI+NRS+HL+AIKAD+ T
Sbjct:   280 QKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIAIKADIET 339

Query:   582 QGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREA 641
             +GEF+N LI++V    + ++EDV+ FV WLD EL  L DERAVLKHF WPEKKADTL+EA
Sbjct:   340 KGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADTLQEA 399

Query:   642 AFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREF 701
             A  YR+LKKLE E+S Y DDP +   +ALKKM +L +K E+ +  L+R R + MR+ ++F
Sbjct:   400 AVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLRGSSMRSYQDF 459

Query:   702 QIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFAFR 761
             +IP  WMLD G+I KIK +S+KLAK YM RVA ELQS   ++++   + +LLQGVRFA+R
Sbjct:   460 KIPVEWMLDSGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEALLLQGVRFAYR 519

Query:   762 IHQFAGGFDAETMHAFEELR 781
              HQFAGG D ET+ A EE++
Sbjct:   520 THQFAGGLDPETLCALEEIK 539

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 128/275 (46%), Positives = 183/275 (66%)

Query:   515 KSTTGV--VQRAPQVVEFYHSLMKRDSR---KDSSNGGVCEAPNVANVRSSMIGEIENRS 569
             K T G   V+RAP+VVEFY +L KR+S    K + NG +  A N      +MIGEIENRS
Sbjct:   120 KRTLGKRSVRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFN-----RNMIGEIENRS 174

Query:   570 SHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFD 629
              +L  IK+D     + ++ LI +V  A + +I +V  FVKW+D+EL  LVDERAVLKHF 
Sbjct:   175 KYLSDIKSDTDRHRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFP 234

Query:   630 -WPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALL 688
              WPE+K D+LREAA  Y+  K L +E+  +KD+P+     AL+++ SL +++E +V    
Sbjct:   235 KWPERKVDSLREAACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDRLEESVNNTE 294

Query:   689 RTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAM 748
             + R++  +  ++FQIP  WMLD G+I ++K SS++LA++YM+R+A EL+S  G  K+   
Sbjct:   295 KMRDSTGKRYKDFQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELESN-GSGKE--- 350

Query:   749 DYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNI 783
               ++LQGVRFA+ IHQFAGGFD ET+  F EL+ I
Sbjct:   351 GNLMLQGVRFAYTIHQFAGGFDGETLSIFHELKKI 385

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2034091 AR791 "AT1G52080" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 39/97 (40%), Positives = 58/97 (59%)

Query:   217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHT 276
             ++LE E+ EL   N  LQ E   L+ K  S+  Q+ + +K  E + I  ++ +   LR  
Sbjct:   277 RDLESEINELTDTNTRLQFENFELSEKLESV--QIIANSKLEEPEEIETLREDCNRLRSE 334

Query:   277 NEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQ 313
             NE+L K VE LQ  R  ++E+L YLRW+N+CLR EL+
Sbjct:   335 NEELKKDVEQLQGDRCTDLEQLVYLRWINACLRYELR 371

GO:0003779 "actin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

ASPGD|ASPL0000038802 pcpA [Emericella nidulans (taxid:162425)]

 Score = 140 (54.3 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
 Identities = 74/332 (22%), Positives = 147/332 (44%)

Query:   138 KEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197
             K+   +L+ EL   K   ++ EL+  L+  K  +D I  R      E+ +L E+  A   
Sbjct:   355 KDSLSELETELRRAKE--QLEELQDSLDQAK--SDAIEARTS----ERQALEEKERAEQN 406

Query:   198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA 257
             + E  ++  N        ++ LE EV ELR+ N  L+ E  +   + + +E +L +  + 
Sbjct:   407 LQELHDEMSNKSISTKGLTRQLEEEVKELRQRNSTLKEELESKTQQMNDLEERLQNSRET 466

Query:   258 SESDI------ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDE 311
             ++S+       +++++ E  V R   +DL+ Q++        + +E A L   +  L DE
Sbjct:   467 TDSERERLLEELTQVRREREVARQERDDLNVQLQEAHDELQRKTDEKALLHTRHHALTDE 526

Query:   312 LQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEE 371
               N      +E A + + I E+ E++ ++  QN    E +   R  +++  ++     EE
Sbjct:   527 SSN----LQNELAKAQSNIRELQESLDTV-KQN--AAENAENLRSQYMEDIER---LQEE 576

Query:   372 MSNLECQDNVLDKTW-VQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEH 430
             + +L  +  + DK     LE+ R    R ++     RAE+     +R  +     + T  
Sbjct:   577 IESLHHE--IEDKEGQFALEQDRWESLRRNLQVQKDRAEDQAAGFKRTIEKLEQVEHTLT 634

Query:   431 EEESLSSQKYDFDQRPQFSANRLEMNRNASVL 462
              +ES   +  D ++   F+A  + ++R    L
Sbjct:   635 GKESKLQEVIDSEKARHFNAEAV-LSRQVKEL 665

GO:0005634 "nucleus" evidence=IDA

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0051417 "microtubule nucleation by spindle pole body" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NCD4 MYH9 "Myosin-9" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 67/308 (21%), Positives = 137/308 (44%)

Query:   150 EWKRNPKVLELERELEAKKIE-NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA 208
             E K+  ++ +  R+LE    + +D+I      + + K  LS++   L   L R  +    
Sbjct:   414 EEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQ 473

Query:   209 INMGSSSSQNLEMEVVELRR-LNKE------LQMEKRNLACKFSSMENQL--TSLAKASE 259
              NM     + LE ++ EL+  L  E       + +KR+L  +  +++ +L  T  + A++
Sbjct:   474 KNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQ 533

Query:   260 SDIISKIKAEALVLRHTNEDLSK----QVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315
              ++ SK + E  VL+ T ED +K    Q++ ++      +EELA        ++  L+ +
Sbjct:   534 QELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKA 593

Query:   316 CSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNL 375
                  SE+A   N ++ +++  G   ++  KV       ++ F +  +     +E ++ L
Sbjct:   594 KQALESERAELSNEVKVLLQGKGDAEHKRKKVDAQLQELQVKFTEGERVKTELAERVNKL 653

Query:   376 ECQ-DNVLDKTWVQLEEGRSPRRRHSISGSNCR---AEELMPNKRRQSDGFMCT-KETEH 430
             + + DNV     +   + +S +     S    +    +EL+  + R    F    K+TE 
Sbjct:   654 QVELDNVTGL--LNQSDSKSIKLAKDFSALESQLQDTQELLQEETRLKLSFSTKLKQTED 711

Query:   431 EEESLSSQ 438
             E+ +L  Q
Sbjct:   712 EKNALKEQ 719

GO:0005524 "ATP binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0000212 "meiotic spindle organization" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001768 "establishment of T cell polarity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0001931 "uropod" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005826 "actomyosin contractile ring" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IEA

GO:0007132 "meiotic metaphase I" evidence=IEA

GO:0007520 "myoblast fusion" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0030224 "monocyte differentiation" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0032796 "uropod organization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043534 "blood vessel endothelial cell migration" evidence=IEA

GO:0051295 "establishment of meiotic spindle localization" evidence=IEA

UNIPROTKB|P14105 MYH9 "Myosin-9" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 67/308 (21%), Positives = 137/308 (44%)

Query:   150 EWKRNPKVLELERELEAKKIE-NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA 208
             E K+  ++ +  R+LE    + +D+I      + + K  LS++   L   L R  +    
Sbjct:  1039 EEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQ 1098

Query:   209 INMGSSSSQNLEMEVVELRR-LNKE------LQMEKRNLACKFSSMENQL--TSLAKASE 259
              NM     + LE ++ EL+  L  E       + +KR+L  +  +++ +L  T  + A++
Sbjct:  1099 KNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQ 1158

Query:   260 SDIISKIKAEALVLRHTNEDLSK----QVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315
              ++ SK + E  VL+ T ED +K    Q++ ++      +EELA        ++  L+ +
Sbjct:  1159 QELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKA 1218

Query:   316 CSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNL 375
                  SE+A   N ++ +++  G   ++  KV       ++ F +  +     +E ++ L
Sbjct:  1219 KQALESERAELSNEVKVLLQGKGDAEHKRKKVDAQLQELQVKFTEGERVKTELAERVNKL 1278

Query:   376 ECQ-DNVLDKTWVQLEEGRSPRRRHSISGSNCR---AEELMPNKRRQSDGFMCT-KETEH 430
             + + DNV     +   + +S +     S    +    +EL+  + R    F    K+TE 
Sbjct:  1279 QVELDNVTGL--LNQSDSKSIKLAKDFSALESQLQDTQELLQEETRLKLSFSTKLKQTED 1336

Query:   431 EEESLSSQ 438
             E+ +L  Q
Sbjct:  1337 EKNALKEQ 1344

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0001525 "angiogenesis" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0001726 "ruffle" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005826 "actomyosin contractile ring" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS

GO:0008305 "integrin complex" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030220 "platelet formation" evidence=ISS

GO:0030224 "monocyte differentiation" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0043495 "protein anchor" evidence=ISS

GO:0043534 "blood vessel endothelial cell migration" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

ZFIN|ZDB-GENE-041111-205 cenpf "centromere protein F, (mitosin)" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 65/300 (21%), Positives = 127/300 (42%)

Query:   176 RRVGMLEDEKTSLSEQLAALSVILE-RKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234
             +++  L++    L  +++ L + L+  + D KN IN  S     LEM   ++   +K L 
Sbjct:   270 QQMEQLKNINQDLRSKVSELELRLQAHEKDMKNQINKFSEIQSQLEMAKKDVAEKDKLLN 329

Query:   235 MEKRNLACKFSSMENQLTSLAKASESDI-ISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293
               +  L  K +    Q  S++K S  +I + ++  E    RH  E + + +E     +  
Sbjct:   330 KSRDELT-KATGQYEQ--SVSKCSAFEIKLKQVTEEMNCQRHNAESMHRSLEQKIKDQER 386

Query:   294 EVE-ELAYLRWVNSCLRDE---LQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLE 349
             E + ELA L+     L  +   ++N  S    +     N ++  ++ V +L N+  K LE
Sbjct:   387 ESQKELAQLQSSYQALDQQFTQVKNKTSMEIQQAKKDHNVLQSEMDKVTALKNRLEKELE 446

Query:   350 YSGGRRLSFIKKFKKWPIASEE----MSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSN 405
                 + L   +  +   +   E       ++ + N L+    QL++G   +R   +    
Sbjct:   447 ELKQKLLRSEQALQASQVKEAETKKKFEEMQREKNTLN---CQLDQGM--KRVKQLEDEK 501

Query:   406 CRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVE 465
                E+++   R   D      +T++EE  L+  +   D +   SA  LE N   +++E E
Sbjct:   502 QNTEQILAKNRMMVDDLKVKTQTQNEE--LTELRKKMDHQSVSSAQELE-NLKKTLIEAE 558

GO:0045502 "dynein binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001468 SYS3 [Candida albicans (taxid:5476)]

 Score = 133 (51.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 76/337 (22%), Positives = 152/337 (45%)

Query:   141 EFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200
             E K  ++L E K      EL+ EL+    E+ E  +     ED+   L +Q+  L   LE
Sbjct:   422 ELKYNSQLKENK------ELKEELDVATKESKEKEKERKKSEDQ---LRKQIQTLKQKLE 472

Query:   201 RKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRN---LACKFSSMENQLTSLAKA 257
                  +N     +   +NL  E  +L +   EL   K N   L  + SS+++ LT+    
Sbjct:   473 ---STENKFESKTKDLKNLSEEKEKLEKRISELSKFKSNDSSLKLEISSLKSSLTN---- 525

Query:   258 SESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE--LAYLRWVNSCL--RDELQ 313
              + + I+++K +   L+ +N+ L+ +VE L  S  NE++   + +L+  N  L  ++ L 
Sbjct:   526 -KDNSINELKTQVDELKQSNKSLNSKVEELSKSN-NELQSNSMDFLKDKNELLTKQEVLM 583

Query:   314 NSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVL---EYSGGRRLSFIKKFKKWPIASE 370
              +  + NS+        ++++  +    N+ + V+     S    LS+ K+ ++  + S+
Sbjct:   584 ENTKSLNSQVTKLQQEKQDVITELEKTKNKLDIVIADKSQSANDMLSYKKQHEELMMKSK 643

Query:   371 EMS-NLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETE 429
             E S  +E  ++ L +    L+E R+ R   ++      AEE++  K+++ D  +      
Sbjct:   644 EYSLRIESLEDDLTEARNLLQE-RT-RETSNMRRLLVDAEEML--KQQKQDSKLEIARAL 699

Query:   430 HEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEK 466
              ++  +        +R Q   + L+ +     L+VEK
Sbjct:   700 EDKAEIERNNASLIKRKQRELDELKESVQEYKLKVEK 736

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	790
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	6e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam02711	95	pfam02711, Pap_E4, E4 protein	0.004

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 471 VPNPPPRPS-CGISGGTKEERQAQIPQPPPLP---RPPPPPPAPKFSG 514
           +P PPP P   GI           IP PPPLP     PPPPP P  +G
Sbjct: 48  IPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAG 95

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 15/44 (34%)

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPR----PPPPPPAP 510
           +P PPP P             A IP PPPLP     PPPPPP P
Sbjct: 72  IPPPPPLPG-----------AAGIPPPPPLPGGAGIPPPPPPLP 104

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
             +      L   L+ L  L +  +E   +L+AEL+E +   ++ EL+RE+E+ +   + 
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN--ELEELKREIESLEERLER 415

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           +  R+  L++E   L  +L  L        +    +       + L   + EL R   EL
Sbjct: 416 LSERLEDLKEELKELEAELEEL---QTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEAL 271
           Q E + L  + SS+E +L  L     +    +   EAL
Sbjct: 473 QEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEAL 510

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 37/224 (16%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
           EL +L + +   ++++  L+  L+  +R  + LE + E    K++       +  LE++ 
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA--EELAELEEKL 346

Query: 186 TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245
             L E+L +L   LE                   E E+ EL    +EL+ +   L  K +
Sbjct: 347 EELKEELESLEAELEEL-----------------EAELEELESRLEELEEQLETLRSKVA 389

Query: 246 SMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN 305
            +E Q+ SL              E   L    E L  + E LQ      +++L       
Sbjct: 390 QLELQIASLN------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--- 434

Query: 306 SCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLE 349
                ELQ        E       +E + E +  L  +  +  +
Sbjct: 435 ---LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 23/58 (39%)

Query: 470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPLPR-----PPPP--------PPAPKFSG 514
            +P PPP P     GG         P PPPLP      PPPP        PP P F G
Sbjct: 83  GIPPPPPLP-----GGA-----GIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPG 130

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 471 VPNPPPRPS-CGISGGTKEERQAQIPQPPPLPRP---PPPPPAP 510
           +P PPP P   GI         A IP PPPLP     PPPPP P
Sbjct: 24  IPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLP 67

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNP-----KVLELERELEAKKIENDEIVRRVGM 180
            L+ L   L+  +E   KL+ E+ E +        ++ ELE ELE  +   D + R +  
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818

Query: 181 LEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNL 240
           LE  +  L +++  L    E   + +  ++              EL    +EL+ E   L
Sbjct: 819 LEQRRERLEQEIEELE---EEIEELEEKLD--------------ELEEELEELEKELEEL 861

Query: 241 ACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297
             +   +E +   L    +   +   +++ E   L     +L +++E     RL E+E 
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE-KLRERLEELEA 919

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
           E++ L+S L+E +E   +LQ EL E K   + LE E  L  +++E          LE+E 
Sbjct: 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE---------LENEL 318

Query: 186 TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC--- 242
             L E+L  L   +E     K  +    +  + LE  + EL    +EL+ +   L     
Sbjct: 319 EELEERLEELKEKIEAL---KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375

Query: 243 -KFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301
             F ++  +L  L        +++I+ E   L+   E L +++E L     +  EEL  L
Sbjct: 376 ELFEALREELAELEAE-----LAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 302 R 302
            
Sbjct: 431 E 431

Length = 1163

>gnl|CDD|217197 pfam02711, Pap_E4, E4 protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 495 PQPPPLPRPPPPPPAPK 511
              PP P PPPPP APK
Sbjct: 19  YTTPPRPPPPPPPWAPK 35

This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	790
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.04
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.55
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.45
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.97
PRK11637	428	AmiB activator; Provisional	96.89
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	96.8
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.72
PHA02562	562	46 endonuclease subunit; Provisional	96.64
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	96.4
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	96.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.37
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.32
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	96.21
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.21
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.2
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.17
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.16
PHA02562	562	46 endonuclease subunit; Provisional	96.08
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.08
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.01
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.01
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	95.98
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.97
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.97
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	95.84
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.78
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.76
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.55
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.54
PRK03918	880	chromosome segregation protein; Provisional	95.48
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	95.48
PRK02224	880	chromosome segregation protein; Provisional	95.43
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.39
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.28
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.25
PLN03188	1320	kinesin-12 family protein; Provisional	95.22
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.19
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.16
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.16
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.12
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.0
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	94.98
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.92
PRK02224	880	chromosome segregation protein; Provisional	94.87
PRK11637	428	AmiB activator; Provisional	94.87
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.77
PRK03918	880	chromosome segregation protein; Provisional	94.67
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	94.57
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.55
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.43
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.41
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.39
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.35
PRK09752	1250	adhesin; Provisional	94.17
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.09
PHA01732	94	proline-rich protein	94.07
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.02
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.98
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	93.87
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.8
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.49
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.35
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.32
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.18
PRK09039	343	hypothetical protein; Validated	93.07
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	93.05
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.97
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.7
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.64
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.5
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.39
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.31
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.28
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.26
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.22
KOG0963	629	consensus Transcription factor/CCAAT displacement	91.91
KOG0933	1174	consensus Structural maintenance of chromosome pro	91.87
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.67
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	91.4
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	91.26
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.24
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	91.23
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	91.07
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	91.04
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.84
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	90.82
PRK09039	343	hypothetical protein; Validated	90.73
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.73
PRK01156	895	chromosome segregation protein; Provisional	90.65
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	90.58
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	90.57
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	90.4
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.36
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	90.32
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.23
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.16
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	90.07
PRK04863	1486	mukB cell division protein MukB; Provisional	90.01
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	89.95
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.71
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.7
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	89.61
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	89.37
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.36
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.35
PHA03247	3151	large tegument protein UL36; Provisional	89.11
PHA03211	461	serine/threonine kinase US3; Provisional	89.06
PRK04778	569	septation ring formation regulator EzrA; Provision	88.9
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.85
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.79
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.64
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	88.6
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.56
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.48
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	88.45
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	88.42
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	88.31
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	88.28
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	88.19
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.0
KOG0018	1141	consensus Structural maintenance of chromosome pro	87.99
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.91
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	87.74
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	87.39
PHA03247	3151	large tegument protein UL36; Provisional	87.33
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	87.24
PF15195	116	TMEM210: TMEM210 family	87.23
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.11
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	87.08
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	86.87
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.6
KOG0979	1072	consensus Structural maintenance of chromosome pro	86.5
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	86.46
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.34
PRK01156	895	chromosome segregation protein; Provisional	86.05
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	85.74
PRK04778	569	septation ring formation regulator EzrA; Provision	85.58
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.54
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.51
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	85.23
KOG0249	916	consensus LAR-interacting protein and related prot	85.14
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.04
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.93
PRK04863	1486	mukB cell division protein MukB; Provisional	84.58
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	84.55
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	84.51
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	84.48
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	84.24
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	84.2
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.02
KOG0979	1072	consensus Structural maintenance of chromosome pro	83.81
KOG4302	660	consensus Microtubule-associated protein essential	83.76
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.72
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	83.68
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	83.68
KOG4673	961	consensus Transcription factor TMF, TATA element m	83.67
PRK15313	955	autotransport protein MisL; Provisional	83.61
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	83.57
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	83.55
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	83.4
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.22
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.06
COG5185	622	HEC1 Protein involved in chromosome segregation, i	83.03
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	82.97
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.92
PRK15313	955	autotransport protein MisL; Provisional	82.89
KOG1937	521	consensus Uncharacterized conserved protein [Funct	82.81
PF01698	386	FLO_LFY: Floricaula / Leafy protein; InterPro: IPR	82.79
KOG4590	409	consensus Signal transduction protein Enabled, con	82.72
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.59
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.53
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	82.26
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	82.25
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.1
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	81.65
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.19
KOG1003	205	consensus Actin filament-coating protein tropomyos	81.17
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.1
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.93
PRK10884	206	SH3 domain-containing protein; Provisional	80.83
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	80.8
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	80.54
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	80.35
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	80.04

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=2.8e-10  Score=131.44  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=37.8

Q ss_pred             HHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863          271 LVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (790)
Q Consensus       271 ~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~  315 (790)
                      ..|+ ..|+.|+.|+++|.+|+++|++||++ |+.|  +|.|++++
T Consensus       342 ~~l~~i~n~~ldvqlkvfdE~~e~Dl~el~~-rled--ir~emDd~  384 (1102)
T KOG1924|consen  342 PDLTEINNDILDVQLKVFDEHKEDDLEELSG-RLED--IRAEMDDA  384 (1102)
T ss_pred             HHhhhhccHHHHHHHHHHhhhhhhhHHHHHh-HHHh--hhhhhccH
Confidence            3444 58999999999999999999999999 9999  88999987

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.55  E-value=7e-08  Score=112.15  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=41.6

Q ss_pred             hhhhhHHhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhcCC
Q 003863          647 DLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQI  703 (790)
Q Consensus       647 ~L~~l~~e~s~~kddp~~pc~~al~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~~I  703 (790)
                      ..++|+..+++|++-+. --|.-.-||..+.++..+.++.|-.+-.-..+-|++.|=
T Consensus       909 ~ik~Le~dlk~~~~~~~-e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~e  964 (1102)
T KOG1924|consen  909 QIKKLERDLKNFKIAGN-EHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGE  964 (1102)
T ss_pred             HHHHHHHHHHhcCCCCc-chhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678888888887542 347778899999999877777776666667777877653

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.45  E-value=0.0049  Score=73.67  Aligned_cols=159  Identities=18%  Similarity=0.279  Sum_probs=108.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLE  182 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------------KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLe  182 (790)
                      -++.||.+||.-++....-|..|..++.-+               +|.|.    +.+|.+..+.....+-.|.+++...+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999988888888875544               22222    44444455555557778888888888


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhhhhhh---------ccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863          183 DEKTSLSEQLAALSVILERKNDNKNAI---------NMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (790)
Q Consensus       183 aE~~rLq~qv~e~~~~~~q~ee~~~~~---------~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~  250 (790)
                      .....++.|+.+--+.++++++.+.+-         +-.   .++.++||.|+..||+..+..+++++.|...+......
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899888888887776655443         112   27889999999999999999999999998888544432


Q ss_pred             hhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863          251 LTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (790)
Q Consensus       251 ~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE  285 (790)
                      -..  +..|.+   .+-.....|++.|..|..-|-
T Consensus       582 ~~e--~~~~~e---~L~~aL~amqdk~~~LE~sLs  611 (697)
T PF09726_consen  582 EKE--SEKDTE---VLMSALSAMQDKNQHLENSLS  611 (697)
T ss_pred             Hhh--hhhhHH---HHHHHHHHHHHHHHHHHHhhh
Confidence            101  111222   233455556666655554443

; GO: 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.97  E-value=0.025  Score=58.13  Aligned_cols=122  Identities=25%  Similarity=0.337  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~  197 (790)
                      +..|++.||..+.+|++.-..|..+-... +||-.    |..||.+...-.++.+.|+.++..|..++..|+-||-+|-.
T Consensus        65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~  144 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES  144 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            47899999999999999999999988888 77776    77888888888889999999999999999999999988877


Q ss_pred             HHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863          198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (790)
Q Consensus       198 ~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a  247 (790)
                      +.-|.+..+.   +....+.+|..=|+|.|...-+|-.+++.|-..|..+
T Consensus       145 l~~~~da~l~---e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  145 LICQRDAILS---ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7765443221   1236788899999999999999999999988887543

>PRK11637 AmiB activator; Provisional

Probab=96.89  E-value=0.099  Score=58.86  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K---EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      +...+|+.|+..+..++.+-..++.++.+. +   ..+. |..++.+|.....+|..++.+|..++.+...+++++...
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666665555555555444444444 1   1111 444444444444444444444444444444444444433

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=96.80  E-value=0.00097  Score=84.71  Aligned_cols=9  Identities=11%  Similarity=0.021  Sum_probs=5.1

Q ss_pred             hhHHhhhhh
Q 003863          750 YMLLQGVRF  758 (790)
Q Consensus       750 ~lL~qgvrF  758 (790)
                      .+.||.|+|
T Consensus      1917 QLiyq~V~~ 1925 (2039)
T PRK15319       1917 QVVWQNYSA 1925 (2039)
T ss_pred             EEEEEEecc
Confidence            455665555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.72  E-value=0.25  Score=52.85  Aligned_cols=84  Identities=21%  Similarity=0.277  Sum_probs=45.7

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~  293 (790)
                      ..+..|..++..|+..|..|+....++-.+++......        ...|..+.+|+..||........++..|-..+-.
T Consensus       223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~--------~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~  294 (312)
T PF00038_consen  223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY--------QAEIAELEEELAELREEMARQLREYQELLDVKLA  294 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH--------HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444444444444332222        2245566777777777666777777776666666


Q ss_pred             hHHHHH-HHHHhh
Q 003863          294 EVEELA-YLRWVN  305 (790)
Q Consensus       294 dvEELv-~LR~~N  305 (790)
                      .--|+. |++.+.
T Consensus       295 Ld~EIatYR~LLE  307 (312)
T PF00038_consen  295 LDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            666666 655543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.64  E-value=0.18  Score=57.80  Aligned_cols=71  Identities=13%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-chh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEWKR-NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKE-QE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e  194 (790)
                      ..+|..|+..+..++.+-..++..+.++++ ... +.++++++.....+...+..++..|+.+...+..++.+
T Consensus       180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~  252 (562)
T PHA02562        180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED  252 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344445555555554444444444444422 222 55555555555555555555555555555555444333

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=96.40  E-value=0.0031  Score=80.39  Aligned_cols=11  Identities=18%  Similarity=0.359  Sum_probs=5.7

Q ss_pred             HHHhhccccCC
Q 003863          530 FYHSLMKRDSR  540 (790)
Q Consensus       530 lYrsL~~r~~~  540 (790)
                      |.++|..|.+.
T Consensus      1745 fl~TLHDR~Ge 1755 (2039)
T PRK15319       1745 QMQTLYDREGS 1755 (2039)
T ss_pred             hcccHHHcCCc
Confidence            44556556543

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=96.38  E-value=0.0027  Score=72.40  Aligned_cols=32  Identities=9%  Similarity=0.204  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhc
Q 003863          670 LKKMVSLSEKMERTVYALLRTRETLMRNCREF  701 (790)
Q Consensus       670 l~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~  701 (790)
                      -.+|..+|+.|.+.|.-|--.---...||-.|
T Consensus       582 ~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSF  613 (817)
T KOG1925|consen  582 RARLTHFLDQCARRIAMLKIVHRRVCNRFHSF  613 (817)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888887755554444455666554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.37  E-value=0.37  Score=59.05  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=11.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQA  146 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~  146 (790)
                      .+..++..++..+..++..-..++.
T Consensus       688 ~l~~~l~~~~~~~~~~~~~l~~l~~  712 (1179)
T TIGR02168       688 ELEEKIAELEKALAELRKELEELEE  712 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.32  E-value=0.36  Score=59.11  Aligned_cols=26  Identities=35%  Similarity=0.372  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAEL  148 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eL  148 (790)
                      +..++..++..+..++..-..++.++
T Consensus       710 l~~~~~~~~~~~~~~~~~~~~~~~~~  735 (1179)
T TIGR02168       710 LEEELEQLRKELEELSRQISALRKDL  735 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455554444444444433333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=96.21  E-value=0.013  Score=54.36  Aligned_cols=84  Identities=25%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhh---------hhcccccchHhHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKN---------AINMGSSSSQNLEMEVVELR  227 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~---------~~~e~e~~~~~LE~Ev~ELR  227 (790)
                      ..||++||+....|...|.++|+-|+.+|+.|..++..|..--........         +....+..++-.+.++.+|.
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls   82 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS   82 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999999988653332110111         11123466888999999999


Q ss_pred             HHHHHHHHHHhhh
Q 003863          228 RLNKELQMEKRNL  240 (790)
Q Consensus       228 r~NkeLQ~EkreL  240 (790)
                      +...+||+|||-|
T Consensus        83 ~kv~eLq~ENRvl   95 (96)
T PF11365_consen   83 GKVMELQYENRVL   95 (96)
T ss_pred             hHHHHHhhccccc
Confidence            9999999999854

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.21  E-value=0.45  Score=58.64  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQAELSE  150 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlE  150 (790)
                      .+..+|..++..+..+++.-..++.++.+
T Consensus       255 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       255 KLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566666666666666666655555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.20  E-value=0.2  Score=55.05  Aligned_cols=142  Identities=15%  Similarity=0.249  Sum_probs=92.6

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ  191 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-------KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q  191 (790)
                      .....-++.|+..++.|++.-..|..|...+       .|+|.  |.+-=+||...+.+|..|...++.-..++.+.|++
T Consensus       156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE  235 (306)
T PF04849_consen  156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE  235 (306)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3345678999999999999999998766655       44454  88888899999999999999998888888888888


Q ss_pred             HHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHH
Q 003863          192 LAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEAL  271 (790)
Q Consensus       192 v~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~  271 (790)
                      |..+..-.-          +.+++++.+-.|-.||+.....-..--+.|+..|...+.+++.+     -.|...+++|..
T Consensus       236 It~Llsqiv----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~-----~~mL~EaQEElk  300 (306)
T PF04849_consen  236 ITSLLSQIV----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC-----MAMLHEAQEELK  300 (306)
T ss_pred             HHHHHHHHH----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            877654322          12344455555555554444333333333333333333333221     235566788888


Q ss_pred             HHhhhc
Q 003863          272 VLRHTN  277 (790)
Q Consensus       272 ~Lr~~N  277 (790)
                      .||..|
T Consensus       301 ~lR~~~  306 (306)
T PF04849_consen  301 TLRKRT  306 (306)
T ss_pred             HhhCCC
Confidence            888654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.17  E-value=0.39  Score=60.71  Aligned_cols=87  Identities=23%  Similarity=0.250  Sum_probs=41.6

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh--HHHHHHHHHHHHhhhchhHHHHHHHHhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGLQMS  290 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~--~va~~~eE~~~Lr~~NE~L~~QlE~f~~d  290 (790)
                      +.....+..++.++.....+++.+...+...++..+..+..+....+.-  -+..+.++...++...+++..+|..++..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  454 (1163)
T COG1196         375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ  454 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3445556666666666666666666666666666655554433221110  11223333333333444444555555544


Q ss_pred             hhchHHHHH
Q 003863          291 RLNEVEELA  299 (790)
Q Consensus       291 R~~dvEELv  299 (790)
                      .......+.
T Consensus       455 ~~~~~~~~~  463 (1163)
T COG1196         455 LEELRDRLK  463 (1163)
T ss_pred             HHHHHHHHH
Confidence            444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.16  E-value=0.53  Score=58.01  Aligned_cols=29  Identities=28%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      +..++..+...+..++..-..++.++.++
T Consensus       249 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  277 (1164)
T TIGR02169       249 LEEELEKLTEEISELEKRLEEIEQLLEEL  277 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888888888888888888777

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.08  E-value=0.35  Score=55.44  Aligned_cols=16  Identities=13%  Similarity=0.335  Sum_probs=7.1

Q ss_pred             ChHHHHHHHHHHHHHH
Q 003863          122 DLFLELDSLRSLLQES  137 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eL  137 (790)
                      .+..+|..|...+..+
T Consensus       185 ~l~~~i~~l~~~i~~~  200 (562)
T PHA02562        185 TLDMKIDHIQQQIKTY  200 (562)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.08  E-value=0.0054  Score=72.83  Aligned_cols=45  Identities=29%  Similarity=0.211  Sum_probs=27.7

Q ss_pred             ccccccccccccchhccccc--CCCC--------CCCCCCccccccccCCCCcCh
Q 003863           79 NSIVASHSRVKRSLIGDLAC--SMNP--------AQVHPNSYQTHRRQSSGSRDL  123 (790)
Q Consensus        79 n~~~~~~~r~~~~l~~dl~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~  123 (790)
                      |++...+.|.+-++.+.|.+  =+++        +|+-.+.++..|||...|.-+
T Consensus        26 ~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~   80 (830)
T KOG1923|consen   26 NSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH   80 (830)
T ss_pred             HhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence            77777888888888777765  2222        333344445777777666544

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.02  E-value=0.012  Score=70.48  Aligned_cols=167  Identities=22%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH------
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ------  191 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q------  191 (790)
                      ...++..|+..+..|+.....|..++.++    +.+.. +..||+|+.+...|++.|+..+.++..|.......      
T Consensus       362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~  441 (722)
T PF05557_consen  362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR  441 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence            46777888888888888888888888888    33334 88999999999999999999999988877665422      


Q ss_pred             ---HHHHHHHHH-----------H-Hhhh-------hhhhcc--------------c---ccchHhHHHHHHHHHHHHHH
Q 003863          192 ---LAALSVILE-----------R-KNDN-------KNAINM--------------G---SSSSQNLEMEVVELRRLNKE  232 (790)
Q Consensus       192 ---v~e~~~~~~-----------q-~ee~-------~~~~~e--------------~---e~~~~~LE~Ev~ELRr~Nke  232 (790)
                         +.++.....           + +++.       .....+              +   ...+..|..++.+|++.+..
T Consensus       442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~  521 (722)
T PF05557_consen  442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENER  521 (722)
T ss_dssp             ----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence               111100000           0 0000       000000              0   13455677777777777777


Q ss_pred             HHHHHhhhhhhhhh---------hhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhh
Q 003863          233 LQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM  289 (790)
Q Consensus       233 LQ~EkreL~~KLd~---------ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~  289 (790)
                      |+.++..|..+|..         ...++=.+...+-++...-.++++..||.+|++|..++..+..
T Consensus       522 L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~  587 (722)
T PF05557_consen  522 LRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE  587 (722)
T ss_dssp             HHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777777777765         1122222222233444444479999999999999999965543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.01  E-value=0.3  Score=58.94  Aligned_cols=165  Identities=21%  Similarity=0.274  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH-------------
Q 003863          129 SLRSLLQESKEREFKLQAELSEW---KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE-------------  190 (790)
Q Consensus       129 ~LR~~V~eLqeRE~kLE~eLlEy---KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~-------------  190 (790)
                      .||.-|..|+.+-.-||.++.++   |+++.  +..||++|..+...--.|..++...+...+.-++             
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r  536 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR  536 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence            34555777777777888888887   77776  9999999998887666666665544433333222             


Q ss_pred             -HHHHHHHHHHH--Hhhhhhhhccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc--ChhhH
Q 003863          191 -QLAALSVILER--KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA--SESDI  262 (790)
Q Consensus       191 -qv~e~~~~~~q--~ee~~~~~~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~--~Es~~  262 (790)
                       +..+.++.+.+  +.|..+...|+   +..+..||.|+.+||..+++=+.+...|-.=|.+.|.+..-|-+.  -|.  
T Consensus       537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--  614 (697)
T PF09726_consen  537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET--  614 (697)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence             33333333333  22222222333   578889999999999886665556666666666666554433221  111  


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHH
Q 003863          263 ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY  300 (790)
Q Consensus       263 va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~  300 (790)
                        +||.|  .+.. =.+..+|||+++...-.--.|++.
T Consensus       615 --riKld--Lfsa-Lg~akrq~ei~~~~~~~~d~ei~~  647 (697)
T PF09726_consen  615 --RIKLD--LFSA-LGDAKRQLEIAQGQLRKKDKEIEE  647 (697)
T ss_pred             --HHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22322  2222 236677888766554444444444

; GO: 0016021 integral to membrane

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.01  E-value=0.0078  Score=71.55  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=18.4

Q ss_pred             hHHHHHHHHhhhhhchHHHHHHH-HHhhHH
Q 003863          279 DLSKQVEGLQMSRLNEVEELAYL-RWVNSC  307 (790)
Q Consensus       279 ~L~~QlE~f~~dR~~dvEELv~L-R~~Nac  307 (790)
                      .|.+..+..-+-|....+||.++ +..+.|
T Consensus       200 sl~~er~~~~~~~~~~~dels~m~k~~~~~  229 (830)
T KOG1923|consen  200 SLNKEREPQSYQRKALLDELSCMQKLSIEK  229 (830)
T ss_pred             hhhhhhhHHHHHHHHhcchhHHHHHHHHHH
Confidence            34555556666677778888877 555544

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=95.98  E-value=0.018  Score=61.44  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=15.0

Q ss_pred             ccccchhhhhhccCCCCCcc
Q 003863          379 DNVLDKTWVQLEEGRSPRRR  398 (790)
Q Consensus       379 ~~~id~~~~~s~~~~SPrR~  398 (790)
                      .+|-|=.||-.+++.+--|.
T Consensus        54 pSlADv~wva~de~~~~~r~   73 (253)
T PF05308_consen   54 PSLADVLWVANDEEESYARF   73 (253)
T ss_pred             cchhhhcceeccccccccee
Confidence            45888999998888865543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.97  E-value=0.55  Score=50.09  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=84.8

Q ss_pred             HHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH----H-Hhhhhhhhccc-ccchHhHHHHHHHHHHHHHHHHH
Q 003863          162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE----R-KNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQM  235 (790)
Q Consensus       162 ~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~----q-~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeLQ~  235 (790)
                      +.+.....+++.|+.+|+-++.+...+.++.........    + +-.++..+..+ +.+...|+.|+.+|......|+.
T Consensus        45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~  124 (239)
T COG1579          45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK  124 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445566666666666666666555543322221    1 23345554444 48899999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863          236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (790)
Q Consensus       236 EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv  299 (790)
                      +...|..++...+..++...        +.+.+++..+++....+..+.+.+..+=..++-.+.
T Consensus       125 ~i~~l~~~~~~~e~~~~e~~--------~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y  180 (239)
T COG1579         125 EIEDLKERLERLEKNLAEAE--------ARLEEEVAEIREEGQELSSKREELKEKLDPELLSEY  180 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999998775533        345666777777666777777776665554444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.97  E-value=0.21  Score=61.40  Aligned_cols=142  Identities=22%  Similarity=0.238  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK  202 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~  202 (790)
                      +.+||.+|+.-|       ++|+.||.|-=  +-+.+|++.|....+|++.|.+.+.-+..+..+...-..+...++++.
T Consensus       175 L~velAdle~ki-------r~LrqElEEK~--enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a  245 (1195)
T KOG4643|consen  175 LEVELADLEKKI-------RTLRQELEEKF--ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA  245 (1195)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence            455555555555       45555554322  117788888888888999999999888888888888777777777754


Q ss_pred             hhhhhhhcccccchHhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchh
Q 003863          203 NDNKNAINMGSSSSQNL---EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNED  279 (790)
Q Consensus       203 ee~~~~~~e~e~~~~~L---E~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~  279 (790)
                      +-+.   .--..++.++   -..|.||++-|..|+.++-=|...|+-.+++-.-+  .-|++|+ +.++.++-|+.++..
T Consensus       246 er~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~--tleseii-qlkqkl~dm~~erdt  319 (1195)
T KOG4643|consen  246 ERPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA--TLESEII-QLKQKLDDMRSERDT  319 (1195)
T ss_pred             hcCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC--ChHHHHH-HHHHHHHHHHHhhhh
Confidence            3321   1112344443   56788899999999988888888888877664221  1244444 344444444433333

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=95.84  E-value=0.011  Score=66.91  Aligned_cols=16  Identities=6%  Similarity=0.077  Sum_probs=11.6

Q ss_pred             chhHHHHHHhhccccC
Q 003863          524 APQVVEFYHSLMKRDS  539 (790)
Q Consensus       524 sPevvelYrsL~~r~~  539 (790)
                      ...+..+|..|...++
T Consensus       261 k~~~~AlFaqlNqGe~  276 (480)
T KOG2675|consen  261 KGGRGALFAQLNQGEG  276 (480)
T ss_pred             cccHHHHHHHHhccch
Confidence            3567789999887653

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.78  E-value=0.32  Score=57.05  Aligned_cols=80  Identities=23%  Similarity=0.297  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-HHHH
Q 003863          225 ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YLRW  303 (790)
Q Consensus       225 ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~LR~  303 (790)
                      +||....+|+-.|.-|..+++.-+.++..-...-|. .++.-..++..||+++..|..+++.|-..+-+.-.|+. |++.
T Consensus       307 ~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~-~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL  385 (546)
T KOG0977|consen  307 GLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ-ALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL  385 (546)
T ss_pred             chhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence            344444555555555566666555555443333433 23445678888999999999999999888888888888 8777


Q ss_pred             hh
Q 003863          304 VN  305 (790)
Q Consensus       304 ~N  305 (790)
                      ++
T Consensus       386 Le  387 (546)
T KOG0977|consen  386 LE  387 (546)
T ss_pred             hc
Confidence            66

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.76  E-value=0.72  Score=54.22  Aligned_cols=32  Identities=22%  Similarity=0.112  Sum_probs=16.2

Q ss_pred             hHHHHHHHHhhhhhchHHHHHHHHHhhHHHhh
Q 003863          279 DLSKQVEGLQMSRLNEVEELAYLRWVNSCLRD  310 (790)
Q Consensus       279 ~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~  310 (790)
                      .|.+++--...-|.--..||...|+-++.|+.
T Consensus       308 ~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~  339 (546)
T PF07888_consen  308 LLRKELSDAVNVRDRTMAELHQARLEAAQLKL  339 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34444444444455555566555555555543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=95.55  E-value=0.86  Score=58.45  Aligned_cols=37  Identities=3%  Similarity=0.029  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863          265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL  301 (790)
Q Consensus       265 ~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L  301 (790)
                      .+.+++..+...=..+..+++..+..+....+.|-|+
T Consensus       988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606       988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444455555554444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.54  E-value=1.4  Score=50.35  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL  192 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv  192 (790)
                      ...||..+...|..-+.+-.+|+.+|.+.   +. |..++.+|..-.+.++.+++.|.-++...+.|+.|-
T Consensus        43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~---e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          43 IQKEIAALEKKIREQQDQRAKLEKQLKSL---ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            47899999999999999999999888654   44 555666666555555555555555555555555444

>PRK03918 chromosome segregation protein; Provisional

Probab=95.48  E-value=1  Score=54.70  Aligned_cols=78  Identities=23%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~  200 (790)
                      |..-.+.++..++.++.+-..|+..+..+.+.+. +.+++.++.....++..+..++..++.+...++.++..+-...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~  238 (880)
T PRK03918        160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE  238 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566666666666666666666544444 66666666666666666666666666666666665554444443

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=95.48  E-value=0.004  Score=68.04  Aligned_cols=15  Identities=7%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             chhHHHHHHhhcccc
Q 003863          524 APQVVEFYHSLMKRD  538 (790)
Q Consensus       524 sPevvelYrsL~~r~  538 (790)
                      ++.+..+|-.|.+.+
T Consensus       259 ~~~~~AlFaeLN~G~  273 (312)
T PF01213_consen  259 SGGMSALFAELNQGE  273 (312)
T ss_dssp             ---------------
T ss_pred             cccHHHHHHHHhccC
Confidence            678889999997643

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>PRK02224 chromosome segregation protein; Provisional

Probab=95.43  E-value=1.1  Score=54.44  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~  293 (790)
                      ..+.+++.++.+|+....+|+..+.++..+|.....++..+......+....+.+++..++..=+.+...++.+...+..
T Consensus       599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555444222223334455555555554444554444444444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.40  E-value=0.98  Score=55.45  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASE  259 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~E  259 (790)
                      +..+++-.|++-++-.|.+|.-.+..|..++|.||+.|.-+..-.+
T Consensus       396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555666666666777777777777665544333

>TIGR00606 rad50 rad50

Probab=95.39  E-value=0.5  Score=60.51  Aligned_cols=117  Identities=17%  Similarity=0.149  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhhhhcccccchHhHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKNAINMGSSSSQNLEMEVVELRRL  229 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~-------q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~  229 (790)
                      +.+|+.++.....+++.|...+..++.+...++.++.++-.-..       +-.+.......++..+.+|..++.+++..
T Consensus       824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~  903 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE  903 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888889999988888888888888888877621111       11112333344567777777777777777


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863          230 NKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR  274 (790)
Q Consensus       230 NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr  274 (790)
                      .+++..+...|..+++.++.....+....+. .+.++..+++.++
T Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  947 (1311)
T TIGR00606       904 IKDAKEQDSPLETFLEKDQQEKEELISSKET-SNKKAQDKVNDIK  947 (1311)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            7777777777777777777665444332221 2234444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.28  E-value=0.82  Score=57.57  Aligned_cols=85  Identities=19%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc--ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~--~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR  291 (790)
                      ..++.++-++.+|..++..||..+..|......-++-+....  ...=+++++.+++++..|...++.+..++...+..|
T Consensus       574 ~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~  653 (1317)
T KOG0612|consen  574 KQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELK  653 (1317)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            455555557778888888888777666554333222111111  112245888899999999988888887777665555


Q ss_pred             hchHHHH
Q 003863          292 LNEVEEL  298 (790)
Q Consensus       292 ~~dvEEL  298 (790)
                      ....+..
T Consensus       654 r~~~e~~  660 (1317)
T KOG0612|consen  654 RENQERI  660 (1317)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.25  E-value=1.4  Score=58.34  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      ..++.++.-+...+...+++...|+.+..+.
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~  934 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKL  934 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356677777777777777776666655554

>PLN03188 kinesin-12 family protein; Provisional

Probab=95.22  E-value=0.76  Score=58.17  Aligned_cols=78  Identities=26%  Similarity=0.265  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHH
Q 003863          221 MEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY  300 (790)
Q Consensus       221 ~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~  300 (790)
                      .|..=||..|+.||.|.|+-+.-..+|=..+-.|-...|..-+|  ++-+....++|+.+-+||+.|....+.++.-|-+
T Consensus      1173 ker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a--~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188       1173 KERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA--QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred             HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555599999999975544444443333333322333343  6777777889999999999999988877666654

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.19  E-value=1.8  Score=44.76  Aligned_cols=110  Identities=21%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK  202 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~  202 (790)
                      +=.-|..|+.-|.+++.++...+..+.+.                ..|..-|..-+..++.+...|+.++..|.+-+..-
T Consensus        25 NL~lIksLKeei~emkk~e~~~~k~m~ei----------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L   88 (201)
T PF13851_consen   25 NLELIKSLKEEIAEMKKKEERNEKLMAEI----------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL   88 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888888888888888777666665                33455666666777777777777777776555543


Q ss_pred             hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          203 NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       203 ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      ..+..+-...++.+++|+.|-.-|.-....|+.|+.+|-.|...+=
T Consensus        89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i  134 (201)
T PF13851_consen   89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333345678888888888899999999999999998888663

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.16  E-value=0.97  Score=44.54  Aligned_cols=95  Identities=28%  Similarity=0.267  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      +++|+.++..+-.||.-|..++..|+.+...+++++.+.-.....-......-..+..+|.-||.++.+....+++....
T Consensus        23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek  102 (143)
T PF12718_consen   23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK  102 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666678888888888888888888888877665555322211111133466677777777766666666666


Q ss_pred             Hhhhhhhhhhhhhhh
Q 003863          237 KRNLACKFSSMENQL  251 (790)
Q Consensus       237 kreL~~KLd~ae~~~  251 (790)
                      .++.-.+.+..+-+.
T Consensus       103 l~e~d~~ae~~eRkv  117 (143)
T PF12718_consen  103 LREADVKAEHFERKV  117 (143)
T ss_pred             HHHHHHHhHHHHHHH
Confidence            666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.16  E-value=1.5  Score=55.81  Aligned_cols=20  Identities=35%  Similarity=0.340  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 003863          126 ELDSLRSLLQESKEREFKLQ  145 (790)
Q Consensus       126 EI~~LR~~V~eLqeRE~kLE  145 (790)
                      |+..|...+..++.+-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~  687 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLE  687 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.12  E-value=0.87  Score=48.65  Aligned_cols=122  Identities=21%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhchh---HHHHHHHHHHh--hhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW--KRNPK---VLELERELEAK--KIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy--KEQE~---I~ELq~qL~~k--~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      ..|++.++.-+..++.+-..|+.+....  .-|+.   +..++..|...  ..|...|...+..++.+...|..++++..
T Consensus        37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~  116 (239)
T COG1579          37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM  116 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555554444444  11111   33444444321  12777777777777777777777776655


Q ss_pred             HHHHHHh---hh-----hhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863          197 VILERKN---DN-----KNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS  245 (790)
Q Consensus       197 ~~~~q~e---e~-----~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd  245 (790)
                      ...+.-+   +.     ..-+.++...-..++.+|.+++..-..+..+..+|+-+|+
T Consensus       117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4433200   00     0000111223344555555555555555555555555444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.00  E-value=1.6  Score=51.37  Aligned_cols=125  Identities=14%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHhh-----hhchh--------HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863          124 FLELDSLRSL-------LQESKEREFKLQAELSEW-----KRNPK--------VLELERELEAKKIENDEIVRRVGMLED  183 (790)
Q Consensus       124 ~~EI~~LR~~-------V~eLqeRE~kLE~eLlEy-----KEQE~--------I~ELq~qL~~k~~Ei~~L~~kI~sLea  183 (790)
                      ..||..|...       |+.|+..-.+|+.+|-.+     ++-..        +..+.+-|...+.+.-.|...|..|+.
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            5788888765       577888888888777766     33222        333334444444455555555555555


Q ss_pred             HhhhHHHHHHHHHHHHHHHhh------hhhh--hccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          184 EKTSLSEQLAALSVILERKND------NKNA--INMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       184 E~~rLq~qv~e~~~~~~q~ee------~~~~--~~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      |...|...+.+..+.+...++      ....  +.++   .-.++.||.|+..|++.|.+|..+.......|++.-
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et  196 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET  196 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            555444444433222221111      1111  1111   256777888888888888888877777777776543

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=94.98  E-value=0.035  Score=63.65  Aligned_cols=14  Identities=29%  Similarity=0.185  Sum_probs=7.6

Q ss_pred             HhhcCCcccccccc
Q 003863          361 KFKKWPIASEEMSN  374 (790)
Q Consensus       361 KLKkW~~~ked~~~  374 (790)
                      ++|+=..++.|.++
T Consensus       225 ~~kksk~tk~disa  238 (569)
T KOG3671|consen  225 YDKKSKITKADISA  238 (569)
T ss_pred             cccccccccccCCC
Confidence            45554566666443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.92  E-value=2.5  Score=46.34  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=18.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQAELS  149 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLl  149 (790)
                      ++..++..|+..+..|+.+...|+.++.
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~  105 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRAEAD  105 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566777777777777766666655443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK02224 chromosome segregation protein; Provisional

Probab=94.87  E-value=2.1  Score=52.28  Aligned_cols=12  Identities=8%  Similarity=-0.011  Sum_probs=7.3

Q ss_pred             CCCchhhhHHHH
Q 003863          767 GGFDAETMHAFE  778 (790)
Q Consensus       767 GG~D~~t~~afe  778 (790)
                      +|+|......|.
T Consensus       822 ~~lD~~~~~~~~  833 (880)
T PRK02224        822 VFLDSGHVSQLV  833 (880)
T ss_pred             ccCCHHHHHHHH
Confidence            677777554443

>PRK11637 AmiB activator; Provisional

Probab=94.87  E-value=4.3  Score=45.98  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K---EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      ..+..+|..+...+..++.+...++.+|..+ +   ..+. |.+++.+|.....+|..+..+|..++.+...+++.+...
T Consensus        50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999888 3   3333 999999999999999999999999999999988888766


Q ss_pred             HHHHH
Q 003863          196 SVILE  200 (790)
Q Consensus       196 ~~~~~  200 (790)
                      ....-
T Consensus       130 lra~Y  134 (428)
T PRK11637        130 LDAAF  134 (428)
T ss_pred             HHHHH
Confidence            54433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.77  E-value=1.5  Score=58.15  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=18.3

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      .++.++..++..|.+..++||-+..+|...|+.-.
T Consensus      1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555443

>PRK03918 chromosome segregation protein; Provisional

Probab=94.67  E-value=3.5  Score=50.13  Aligned_cols=13  Identities=15%  Similarity=0.066  Sum_probs=7.6

Q ss_pred             CCCCchhhhHHHH
Q 003863          766 AGGFDAETMHAFE  778 (790)
Q Consensus       766 AGG~D~~t~~afe  778 (790)
                      .||+|....+.+-
T Consensus       822 ~~~lD~~~~~~l~  834 (880)
T PRK03918        822 TPFLDEERRRKLV  834 (880)
T ss_pred             CcccCHHHHHHHH
Confidence            3777777544443

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.57  E-value=0.024  Score=69.68  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=17.6

Q ss_pred             hhhccchhhhhhhc-CCCcchhHHHHHHHhhhhh
Q 003863          615 LGFLVDERAVLKHF-DWPEKKADTLREAAFGYRD  647 (790)
Q Consensus       615 L~~L~DEraVL~~F-~~Pe~K~dalReAa~ly~~  647 (790)
                      |..|  -.+||+-+ +.|. -|+-.++.-++|+-
T Consensus       115 lkyl--PhavlkLLeNmP~-pWe~~~evkvlyh~  145 (2365)
T COG5178         115 LKYL--PHAVLKLLENMPS-PWEDVSEVKVLYHC  145 (2365)
T ss_pred             hhhc--hHHHHHHHhcCCC-hHhhhheeeEEeec
Confidence            4444  45677777 5663 45556666666654

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.55  E-value=1.5  Score=48.69  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLED  183 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------------KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLea  183 (790)
                      ...|-+.++.+++.|++|-..|.....++               +++..    +.+...+..--..|++.|.+++.-++-
T Consensus        21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG  100 (319)
T PF09789_consen   21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG  100 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46799999999999999999998766544               13333    566667777777799999999999999


Q ss_pred             HhhhHHHHHHHHH
Q 003863          184 EKTSLSEQLAALS  196 (790)
Q Consensus       184 E~~rLq~qv~e~~  196 (790)
                      +++-|.++++.+-
T Consensus       101 D~KlLR~~la~~r  113 (319)
T PF09789_consen  101 DIKLLREKLARQR  113 (319)
T ss_pred             hHHHHHHHHHhhh
Confidence            9999998888764

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.43  E-value=1.9  Score=41.53  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=27.8

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS  246 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~  246 (790)
                      ..-..|+.|+.++.+...+|..||.=|--+|+.
T Consensus        98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445788999999999999999999988887764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.41  E-value=1.7  Score=48.08  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh--
Q 003863          128 DSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN--  205 (790)
Q Consensus       128 ~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~--  205 (790)
                      +.|+..|.+|+..-..|                       ..+++.++.+...|+++++.|.+.-+......+|+||.  
T Consensus        23 ~~l~~~~~sL~qen~~L-----------------------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is   79 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVL-----------------------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS   79 (310)
T ss_pred             HHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777655444                       44667777888888888888888777777777777764  


Q ss_pred             ---hhhhccc--------ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          206 ---KNAINMG--------SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       206 ---~~~~~e~--------e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                         +|+-..+        ....++=|.-...|-|....|+.|+.+|...|..-+
T Consensus        80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq  133 (310)
T PF09755_consen   80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ  133 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence               2221111        133344455677889999999999999999998755

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.39  E-value=2.7  Score=49.65  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL  192 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv  192 (790)
                      |.+|+.+|.....+...|..+...+...++.|..+.
T Consensus       173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~  208 (546)
T PF07888_consen  173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEER  208 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666665555555555444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.35  E-value=1.7  Score=53.57  Aligned_cols=36  Identities=25%  Similarity=0.209  Sum_probs=23.8

Q ss_pred             hhhhhcccccchHhHHHHHHHHH---HHHHHHHHHHhhh
Q 003863          205 NKNAINMGSSSSQNLEMEVVELR---RLNKELQMEKRNL  240 (790)
Q Consensus       205 ~~~~~~e~e~~~~~LE~Ev~ELR---r~NkeLQ~EkreL  240 (790)
                      ...+..++|.+|+.||.+|.+|.   ..|.+|++-++++
T Consensus       453 LtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~el  491 (1243)
T KOG0971|consen  453 LTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNREL  491 (1243)
T ss_pred             HHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555777899999998886654   4455666555543

>PRK09752 adhesin; Provisional

Probab=94.17  E-value=0.043  Score=68.37  Aligned_cols=9  Identities=33%  Similarity=0.530  Sum_probs=5.0

Q ss_pred             hhHHhhhhh
Q 003863          750 YMLLQGVRF  758 (790)
Q Consensus       750 ~lL~qgvrF  758 (790)
                      .++||+|++
T Consensus      1132 QLiwq~V~~ 1140 (1250)
T PRK09752       1132 QVIYQGVQQ 1140 (1250)
T ss_pred             EEEEEEccc
Confidence            455665554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.09  E-value=2.2  Score=44.40  Aligned_cols=84  Identities=25%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHH
Q 003863          158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEK  237 (790)
Q Consensus       158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ek  237 (790)
                      .+|+..-+.-+.|...|++.|..++..+.+|.+.+..+..-..=-+.++       +.-+.|+.|+.+||-..+.|+.++
T Consensus        11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal-------~~aK~l~eEledLk~~~~~lEE~~   83 (193)
T PF14662_consen   11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL-------QKAKALEEELEDLKTLAKSLEEEN   83 (193)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3343333333444455555555555555555554443322111001111       112334445555555555555555


Q ss_pred             hhhhhhhhhhh
Q 003863          238 RNLACKFSSME  248 (790)
Q Consensus       238 reL~~KLd~ae  248 (790)
                      +-|..+...+|
T Consensus        84 ~~L~aq~rqlE   94 (193)
T PF14662_consen   84 RSLLAQARQLE   94 (193)
T ss_pred             HHHHHHHHHHH
Confidence            55544444443

>PHA01732 proline-rich protein

Probab=94.07  E-value=0.078  Score=48.52  Aligned_cols=6  Identities=50%  Similarity=0.899  Sum_probs=2.4

Q ss_pred             chhHHH
Q 003863          524 APQVVE  529 (790)
Q Consensus       524 sPevve  529 (790)
                      +|.+.+
T Consensus        44 apki~~   49 (94)
T PHA01732         44 APKIRE   49 (94)
T ss_pred             hhHHHH
Confidence            344433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.02  E-value=3.4  Score=45.68  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhh--cc---cccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863          171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAI--NM---GSSSSQNLEMEVVELRRLNKELQMEKRNLAC  242 (790)
Q Consensus       171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q---~ee~~~~~--~e---~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~  242 (790)
                      ++.|..++..||.||..|..++..+..-..+   +++.+..|  ..   ....+..|..|++.-..-|.+.|.|...|..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999998887644332   22222222  11   1255666666666666666666666666655


Q ss_pred             hhhhhhhhh
Q 003863          243 KFSSMENQL  251 (790)
Q Consensus       243 KLd~ae~~~  251 (790)
                      ++-..|.++
T Consensus       242 qivdlQ~r~  250 (306)
T PF04849_consen  242 QIVDLQQRC  250 (306)
T ss_pred             HHHHHHHHH
Confidence            555444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.98  E-value=6.4  Score=48.70  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=62.7

Q ss_pred             cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (790)
Q Consensus       212 ~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR  291 (790)
                      .+....+|..-+.++.|.-.++.---.+....|++.+..+..+.  +|   ++.++.....+.+..-....|++-....|
T Consensus       464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~--~e---~~~lq~~~~~~~qs~~~~~~~l~~~l~~K  538 (980)
T KOG0980|consen  464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL--IE---LEELQRTLSNLAQSHNNQLAQLEDLLKQK  538 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HH---HHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            34555666666666666666666666666666666665544331  22   34555666666666667888899888889


Q ss_pred             hchHHHHHHHHHhhHHHhhhhhhc
Q 003863          292 LNEVEELAYLRWVNSCLRDELQNS  315 (790)
Q Consensus       292 ~~dvEELv~LR~~NacLR~EL~~~  315 (790)
                      ...+.+++..+-.-+.+|.|+.+-
T Consensus       539 D~~~~~~~~~~~e~~~~~~e~e~s  562 (980)
T KOG0980|consen  539 DRLAAELVAREEEREALRLEAERS  562 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            989999997442222366666443

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=93.87  E-value=0.11  Score=58.83  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=18.4

Q ss_pred             hhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          168 KIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      ..++..+.-++++||+..-||.-.|.++.
T Consensus        56 f~da~~f~~R~NSLQ~RIDRL~vkVtqLD   84 (518)
T KOG1830|consen   56 FNDANNFNHRANSLQERIDRLAVKVTQLD   84 (518)
T ss_pred             HHHhhhhhhhhhHHHHHHHHHhhhhhccC
Confidence            44566666677777777777666655553

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.80  E-value=0.35  Score=49.27  Aligned_cols=28  Identities=32%  Similarity=0.368  Sum_probs=12.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863          217 QNLEMEVVELRRLNKELQMEKRNLACKF  244 (790)
Q Consensus       217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KL  244 (790)
                      ++|+.++.|+.+.|..|+.|.--|-..+
T Consensus       133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~  160 (194)
T PF08614_consen  133 KDLEEELKEKNKANEILQDELQALQLQL  160 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.78  E-value=3.5  Score=51.74  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      |-+-++||.....++.....++..|+.+.+..+..+.++
T Consensus       276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~  314 (1074)
T KOG0250|consen  276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEA  314 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666555566666666666666655555444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.49  E-value=7.5  Score=48.76  Aligned_cols=124  Identities=20%  Similarity=0.250  Sum_probs=72.8

Q ss_pred             CCCcccc----ccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhchh-HHHHHHHHHHhhhhHHHHHHH
Q 003863          106 HPNSYQT----HRRQSSGSRDLFLELDSLRSLLQESKEREFKLQA---ELSEWKRNPK-VLELERELEAKKIENDEIVRR  177 (790)
Q Consensus       106 ~~~~~~~----~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~---eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~k  177 (790)
                      .+|.|+.    ...+.+..++.-.+|..|.....+|+.....|+.   +|...+-|.. -..|+.||.++.-++.++...
T Consensus       651 ~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r  730 (1174)
T KOG0933|consen  651 EGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKR  730 (1174)
T ss_pred             cCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567762    2234455566778888888887777766665553   4444333333 889999999999888887766


Q ss_pred             Hh------------hhHHHhhhHHHHHHHHHHHHHHHhhh-hhhhc-------ccccchHhHHHHHHHHHHH
Q 003863          178 VG------------MLEDEKTSLSEQLAALSVILERKNDN-KNAIN-------MGSSSSQNLEMEVVELRRL  229 (790)
Q Consensus       178 I~------------sLeaE~~rLq~qv~e~~~~~~q~ee~-~~~~~-------e~e~~~~~LE~Ev~ELRr~  229 (790)
                      +.            .+.++-+.++.++.+...+.++.++. ..++.       +-+.++++|+.|+..+.+.
T Consensus       731 ~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~  802 (1174)
T KOG0933|consen  731 LEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR  802 (1174)
T ss_pred             HhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH
Confidence            53            34444445555555555555543332 12221       1246666666666555443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.35  E-value=5.1  Score=42.16  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=20.3

Q ss_pred             hhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863          278 EDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (790)
Q Consensus       278 E~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~  315 (790)
                      +.+...+..|+..-...-++|..-+--..|++.||+..
T Consensus       193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555544555553344445566777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.32  E-value=5.5  Score=52.66  Aligned_cols=148  Identities=20%  Similarity=0.216  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHH----HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVL----ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI  198 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~----ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~  198 (790)
                      ..|+..|+..+..+.....+|..++... .+++.+.    |++.+=......+..++.+|+.|+.++..|.++++..-..
T Consensus        79 ~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~  158 (1822)
T KOG4674|consen   79 RNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKT  158 (1822)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777777777777 4444422    3443333333445555556666666666666666544322


Q ss_pred             HH------------------------HHhhh---------------------hhhh-----cccccchHhHHHHHHHHHH
Q 003863          199 LE------------------------RKNDN---------------------KNAI-----NMGSSSSQNLEMEVVELRR  228 (790)
Q Consensus       199 ~~------------------------q~ee~---------------------~~~~-----~e~e~~~~~LE~Ev~ELRr  228 (790)
                      ..                        |+.++                     ..++     .+++..|.++..+..+|+.
T Consensus       159 ~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~  238 (1822)
T KOG4674|consen  159 LSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQE  238 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            21                        11111                     1111     1234788889999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHH
Q 003863          229 LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALV  272 (790)
Q Consensus       229 ~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~  272 (790)
                      .|+-|-.++.+|..++..--..+..+.. +.+..+.+..+|+..
T Consensus       239 ~~~~l~q~~~eLs~~ie~~~~~ls~~k~-t~~s~~~kf~~El~~  281 (1822)
T KOG4674|consen  239 KNKSLKQQNEELSKKIESLNLELSKLKD-TAESSEEKFEKELST  281 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            9999999999999988877766666544 333345566666653

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.18  E-value=4.9  Score=50.96  Aligned_cols=75  Identities=23%  Similarity=0.315  Sum_probs=45.5

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~  293 (790)
                      ..+.+||-++..++...+.|..+...+..+..--+..+..    ++. -+..|++++..++..=+.+.+.+..|..+|-+
T Consensus       942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e----~~~-~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen  942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE----AEE-SLKEIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4455555555555555555555555554444443333322    222 33467888888888888888888888887776

>PRK09039 hypothetical protein; Validated

Probab=93.07  E-value=1.4  Score=48.95  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      |.+|+.++.....+-..|......+......++.++..+..-...++..   =.+....+.-|-.+|..||+.+..||.+
T Consensus        83 l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~---~se~~~~V~~L~~qI~aLr~Qla~le~~  159 (343)
T PRK09039         83 VANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV---SARALAQVELLNQQIAALRRQLAALEAA  159 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666666666655555444555555555543211111000   0011244555666666666666666655


Q ss_pred             Hhhhhhhhhhhhhhh
Q 003863          237 KRNLACKFSSMENQL  251 (790)
Q Consensus       237 kreL~~KLd~ae~~~  251 (790)
                      ...+..+...++.++
T Consensus       160 L~~ae~~~~~~~~~i  174 (343)
T PRK09039        160 LDASEKRDRESQAKI  174 (343)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555554444443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=93.05  E-value=0.17  Score=58.43  Aligned_cols=11  Identities=55%  Similarity=1.102  Sum_probs=5.1

Q ss_pred             ccCCCCCCCCC
Q 003863          468 VLRVPNPPPRP  478 (790)
Q Consensus       468 a~rvP~PPP~p  478 (790)
                      +.|.|+|||++
T Consensus       372 ~ar~PPPpp~s  382 (569)
T KOG3671|consen  372 AARPPPPPPRS  382 (569)
T ss_pred             CCCCCcCCCCC
Confidence            34444555444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.97  E-value=14  Score=44.40  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      .+|++.|+..|..|..+-..++.++..+
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l  354 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKML  354 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888887777777777777666

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.70  E-value=4.6  Score=39.85  Aligned_cols=41  Identities=15%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~  253 (790)
                      ..+++..++.+.++.|..+.|+.+...+-.|++..+.++..
T Consensus       100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen  100 TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            47788888888888899899988888888888887766643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.64  E-value=6.7  Score=50.27  Aligned_cols=76  Identities=24%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA  193 (790)
Q Consensus       116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~  193 (790)
                      |..+...+..+|..+...+..++.+...+|.+|..+  +..+.+++.++.....++.-....+..|+.+...++.++.
T Consensus       598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            444445778888889999999988888888888766  1113444444444444444444444444444444444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.50  E-value=6.3  Score=48.21  Aligned_cols=82  Identities=18%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------hhcccC-h-hhHHHHHHHHHHHHhhhchhHHHHH
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT-------SLAKAS-E-SDIISKIKAEALVLRHTNEDLSKQV  284 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~-------~~~~~~-E-s~~va~~~eE~~~Lr~~NE~L~~Ql  284 (790)
                      ..+..|-.++.|+...|-.|--|+.+|--+|.+.++..-       .|.... + ..+.-.|++..+.|-.+.+.-..++
T Consensus       486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ei  565 (1118)
T KOG1029|consen  486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEI  565 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345556666777777777777788888888876654211       110000 0 1134455566666666666666666


Q ss_pred             HHHhhhhhchH
Q 003863          285 EGLQMSRLNEV  295 (790)
Q Consensus       285 E~f~~dR~~dv  295 (790)
                      ++|+......-
T Consensus       566 di~n~qlkelk  576 (1118)
T KOG1029|consen  566 DIFNNQLKELK  576 (1118)
T ss_pred             hhHHHHHHHHH
Confidence            66665554333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.39  E-value=7.9  Score=49.20  Aligned_cols=38  Identities=13%  Similarity=0.206  Sum_probs=17.4

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      +....+-.|+..++.....+-.+..+..-+++.||+.+
T Consensus       472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel  509 (1293)
T KOG0996|consen  472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL  509 (1293)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444455555554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.31  E-value=11  Score=45.50  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=37.1

Q ss_pred             cchHhHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863          214 SSSQNLEMEVVELRRLNKEL-------QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG  286 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeL-------Q~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~  286 (790)
                      +.+.+|+.-++.|-..|.+|       |+-+++|..||...+..+..+.     +.|+--.+|+..|.+.++.+..||..
T Consensus       167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~-----e~le~K~qE~~~Lq~q~dq~~~~Lqq  241 (617)
T PF15070_consen  167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK-----EKLELKSQEAQSLQEQRDQYLGHLQQ  241 (617)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34445555444444444222       3344566666665554443331     12322236788888888887777774


Q ss_pred             H
Q 003863          287 L  287 (790)
Q Consensus       287 f  287 (790)
                      .
T Consensus       242 y  242 (617)
T PF15070_consen  242 Y  242 (617)
T ss_pred             H
Confidence            4

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.28  E-value=2.5  Score=44.32  Aligned_cols=72  Identities=29%  Similarity=0.336  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      ..||-.||..++++...-...+.++..+    ..... +...+++|....+|+..|..+|..|+.|...|++.++..
T Consensus        30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            5789999999998888888888888877    22222 677789999999999999999999999999999999876

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.26  E-value=5.6  Score=41.71  Aligned_cols=83  Identities=25%  Similarity=0.292  Sum_probs=62.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----hchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K-----RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K-----EQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e  194 (790)
                      .|...-|..++..+..+++....|+.++.+. .     ....+.+++.++.....++..|...|..+..+.+..++.+.+
T Consensus        16 ~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~   95 (302)
T PF10186_consen   16 NCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE   95 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445568999999999999999999888887 3     233377888888888888888888888888887777777776


Q ss_pred             HHHHHHHHh
Q 003863          195 LSVILERKN  203 (790)
Q Consensus       195 ~~~~~~q~e  203 (790)
                      .-....+..
T Consensus        96 ~~~~l~~~~  104 (302)
T PF10186_consen   96 LRESLEQRR  104 (302)
T ss_pred             HHHHHHHHH
Confidence            655555433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.22  E-value=7  Score=49.28  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEK-RNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~Ek-reL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR  291 (790)
                      +..++++-.++..|++....++.+- .++..+++..+..+..|..     -|+++++....||.+-.++...+...+..+
T Consensus       364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~-----evek~e~~~~~L~~e~~~~~~~~~~~~ee~  438 (1074)
T KOG0250|consen  364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK-----EVEKLEEQINSLREELNEVKEKAKEEEEEK  438 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3556666666666666666666655 5566666666555544422     133444444444443334444443333333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=91.91  E-value=12  Score=44.86  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh------ccc---ccchHhHHHHHHHHHHH
Q 003863          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI------NMG---SSSSQNLEMEVVELRRL  229 (790)
Q Consensus       159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~------~e~---e~~~~~LE~Ev~ELRr~  229 (790)
                      .|+.+...-+.++..+..+|.+|+.-...-+.++-+.-.-..+ +-+.+.+      .++   ++++..||-|+..||-.
T Consensus       186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de-e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q  264 (629)
T KOG0963|consen  186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE-EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ  264 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445567777777777777666666655444332111 1112221      112   48899999999988864


Q ss_pred             H
Q 003863          230 N  230 (790)
Q Consensus       230 N  230 (790)
                      .
T Consensus       265 l  265 (629)
T KOG0963|consen  265 L  265 (629)
T ss_pred             H
Confidence            3

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.87  E-value=8.4  Score=48.33  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH----HHhh
Q 003863          268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL----RWVN  305 (790)
Q Consensus       268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L----R~~N  305 (790)
                      .|.......-..|..++..+..+..+-..++-.+    -|++
T Consensus       899 ~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  899 SEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            3333444444455566666666655544444322    5666

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.67  E-value=14  Score=45.38  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=13.9

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      +|+.+...+..+-+|...|+.++.|+.
T Consensus       473 ~ie~~~~q~e~~isei~qlqarikE~q  499 (1118)
T KOG1029|consen  473 EIEEVTKQRELMISEIDQLQARIKELQ  499 (1118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555543

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=91.40  E-value=4.3  Score=42.45  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK---VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVIL  199 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~---I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~  199 (790)
                      ...=|+.....++-+..|-.+|++ |..|...--   ...|+..+..-..++..++.+|..+..+.+..|.++..-....
T Consensus       102 w~~al~na~a~lehq~~R~~NLeL-l~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~L  180 (221)
T PF05700_consen  102 WKEALDNAYAQLEHQRLRLENLEL-LSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYL  180 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345577777788888888888875 455533322   6677777777777888888888888888888888777665554


Q ss_pred             HHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHH
Q 003863          200 ERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQM  235 (790)
Q Consensus       200 ~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~  235 (790)
                      +++ .+...+-.+++.....||.||.+||+.-.+++.
T Consensus       181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~  217 (221)
T PF05700_consen  181 EQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE  217 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            443 444444455566666666666666666555543

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=91.26  E-value=17  Score=42.36  Aligned_cols=76  Identities=26%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863          222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (790)
Q Consensus       222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv  299 (790)
                      |..=||..|+.||.|.++-+.-..+|=-.+-.|....|+..+|  ++-+....++|+.+-+|++.|....+.++.-+-
T Consensus       404 Er~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~k  479 (488)
T PF06548_consen  404 ERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--QERAMDAEQENEKAKKQIEKLKRKHKMEISTMK  479 (488)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555999999999875555444444444443333333343  667777789999999999999988887666554

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.24  E-value=13  Score=45.08  Aligned_cols=51  Identities=10%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKN  207 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~  207 (790)
                      |+.|..+.+....=+..+..+|..|++|.++|..-+.....+.++++|+.+
T Consensus       476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~  526 (961)
T KOG4673|consen  476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE  526 (961)
T ss_pred             HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            666655555444447777788899999999988877777777776665533

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=91.23  E-value=7.3  Score=45.77  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          125 LELDSLRSLLQESKEREFKLQAELSEW---------KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy---------KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      .-+++|+..+..++++-..|..+-+.|         +||-.+..+.++|.--++++..+...|.++-.|+.+++++...+
T Consensus       159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL  238 (596)
T KOG4360|consen  159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL  238 (596)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999988888888777766         44444556666666656555555555555544444444444433

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=91.07  E-value=0.14  Score=58.99  Aligned_cols=29  Identities=28%  Similarity=0.465  Sum_probs=17.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 003863          469 LRVPNPPPRPSCGISGGTKEERQAQIPQPPPL  500 (790)
Q Consensus       469 ~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~  500 (790)
                      +.+|+|||+|+.. |  .++--..|+|||||-
T Consensus       227 ~~~P~~P~~P~~~-P--~~~~L~~GvPPPPP~  255 (817)
T KOG1925|consen  227 PKEPLIPASPKEL-P--TRDFLLSGVPPPPPK  255 (817)
T ss_pred             CCCCCCCCChhcc-C--CchhhhcCCCCCCCC
Confidence            3456666666553 2  334567788887765

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.04  E-value=2.4  Score=47.36  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=14.6

Q ss_pred             cchHHHHHHHHhHHHHhhhccchhhhhh
Q 003863          599 QNIEDVVAFVKWLDDELGFLVDERAVLK  626 (790)
Q Consensus       599 ~dm~dlv~Fv~wlD~eL~~L~DEraVL~  626 (790)
                      .+...|++-..-|++++.+|--..-||+
T Consensus       246 ~G~~kL~~~~etLEqq~~~L~~niDIL~  273 (365)
T KOG2391|consen  246 IGKQKLVAMKETLEQQLQSLQKNIDILK  273 (365)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3344555555566666666544444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.84  E-value=5.7  Score=42.60  Aligned_cols=78  Identities=24%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             HHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863          163 ELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC  242 (790)
Q Consensus       163 qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~  242 (790)
                      +|+.-+..+--+--+|..||.+|..|+.++..+......         .+...-...+.|+.+||+....+..++..+..
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~---------~~~~~~~~ye~el~~lr~~id~~~~eka~l~~   75 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGE---------EVSRIKEMYEEELRELRRQIDDLSKEKARLEL   75 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---------cCcccccchhhHHHHhHHhhhhHHHHhhHHhh
Confidence            344445666667778889999999999888876544321         11112233445555555555555555544444


Q ss_pred             hhhhhhh
Q 003863          243 KFSSMEN  249 (790)
Q Consensus       243 KLd~ae~  249 (790)
                      .++.+..
T Consensus        76 e~~~l~~   82 (312)
T PF00038_consen   76 EIDNLKE   82 (312)
T ss_dssp             HHHHHHH
T ss_pred             hhhhHHH
Confidence            4444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=90.82  E-value=0.27  Score=55.88  Aligned_cols=10  Identities=20%  Similarity=0.408  Sum_probs=6.5

Q ss_pred             chhHHHHHHh
Q 003863          524 APQVVEFYHS  533 (790)
Q Consensus       524 sPevvelYrs  533 (790)
                      .+.+.++|.+
T Consensus       370 ~~pl~~~~p~  379 (518)
T KOG1830|consen  370 NPPLCNPFPS  379 (518)
T ss_pred             CCCCCCCCcc
Confidence            4667777773

>PRK09039 hypothetical protein; Validated

Probab=90.73  E-value=21  Score=39.90  Aligned_cols=81  Identities=12%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~  249 (790)
                      ++..|..++..+++++.+|+.+.+.......   ++..+-...+..+..+..+..|.++....|+.|...|..+|...|+
T Consensus        82 ~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~---~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~  158 (343)
T PRK09039         82 SVANLRASLSAAEAERSRLQALLAELAGAGA---AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA  158 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666666666666553211000   0001111123667777777777788888888888888888777776


Q ss_pred             hhhh
Q 003863          250 QLTS  253 (790)
Q Consensus       250 ~~~~  253 (790)
                      .+..
T Consensus       159 ~L~~  162 (343)
T PRK09039        159 ALDA  162 (343)
T ss_pred             HHHH
Confidence            6644

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.73  E-value=11  Score=45.30  Aligned_cols=68  Identities=25%  Similarity=0.311  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQ---AELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLS  189 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE---~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq  189 (790)
                      .+..|+.+|+.-+..|.++=...-   ..|..+ .+|+. |.||++.|.....+.....+.+..|++++....
T Consensus        84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~S  156 (617)
T PF15070_consen   84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATAS  156 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence            356677777777777765433221   233333 78888 999998888766655444445555554444333

>PRK01156 chromosome segregation protein; Provisional

Probab=90.65  E-value=21  Score=44.03  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=23.4

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      ...+..+|..|...+++|..+...|..++.++
T Consensus       471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~  502 (895)
T PRK01156        471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDL  502 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888888887777777666655

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=90.58  E-value=0.28  Score=52.57  Aligned_cols=6  Identities=0%  Similarity=0.523  Sum_probs=2.6

Q ss_pred             hhHhhh
Q 003863          561 MIGEIE  566 (790)
Q Consensus       561 mi~Ei~  566 (790)
                      +|.+|.
T Consensus       243 VLKDmn  248 (253)
T PF05308_consen  243 VLKDMN  248 (253)
T ss_pred             HHHhhh
Confidence            344443

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=90.57  E-value=0.36  Score=54.58  Aligned_cols=11  Identities=45%  Similarity=0.851  Sum_probs=5.4

Q ss_pred             cCCCCCCCCCC
Q 003863          469 LRVPNPPPRPS  479 (790)
Q Consensus       469 ~rvP~PPP~ps  479 (790)
                      +..|+=||++-
T Consensus       482 ls~PPlPPr~d  492 (563)
T KOG1785|consen  482 LSLPPLPPRLD  492 (563)
T ss_pred             CCCCCCCCCcc
Confidence            33455555544

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=90.40  E-value=10  Score=47.78  Aligned_cols=128  Identities=23%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHh-------hhHHHhh
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAE------LSEWKRNPK-VLELERELEAKKIENDEIVRRVG-------MLEDEKT  186 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~e------LlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~-------sLeaE~~  186 (790)
                      -||..||++|++-|....++.=-.-.|      -.|++++.. |.+|+.+|.....++..|.....       -|..+..
T Consensus       407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~  486 (1041)
T KOG0243|consen  407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE  486 (1041)
T ss_pred             HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            467899999999997766543222111      111112222 44444444443333333333333       2222222


Q ss_pred             hHH----HHHHHHHHHHHHHh---hhhhhhccc----ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          187 SLS----EQLAALSVILERKN---DNKNAINMG----SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       187 rLq----~qv~e~~~~~~q~e---e~~~~~~e~----e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      .++    +...++..+.+.-+   ..++.++++    ++....+..-+.+||+.+.+-|.....|..||+...
T Consensus       487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~  559 (1041)
T KOG0243|consen  487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD  559 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            222    22222223222111   112223333    244445555588999999999999999999999775

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.37  E-value=33  Score=38.06  Aligned_cols=70  Identities=29%  Similarity=0.371  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863          125 LELDSLRSLLQESKEREFKLQAELSEW--K--RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy--K--EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e  194 (790)
                      ..+..|+..+.++.++...|..++..|  +  +.-. ++||-.+...-..+-+.++.+|.-|.++...+-+.+.+
T Consensus        13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e   87 (294)
T COG1340          13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE   87 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345578888899999999999999999  2  1222 88888888888888888999998888887665444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.36  E-value=26  Score=36.89  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=17.1

Q ss_pred             HHHHHHHhhhchhHHHHHHHHhhhhhchHHHH
Q 003863          267 KAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL  298 (790)
Q Consensus       267 ~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEEL  298 (790)
                      ...+..|-...+.|...|......+..--.||
T Consensus       196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555566666665555554444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=90.32  E-value=0.24  Score=56.39  Aligned_cols=6  Identities=33%  Similarity=0.152  Sum_probs=2.4

Q ss_pred             HHHhhh
Q 003863          577 ADVATQ  582 (790)
Q Consensus       577 ~dv~~~  582 (790)
                      +-|+.|
T Consensus       334 W~VEnq  339 (480)
T KOG2675|consen  334 WRVENQ  339 (480)
T ss_pred             EEEeee
Confidence            334443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.23  E-value=25  Score=41.19  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863          264 SKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (790)
Q Consensus       264 a~~~eE~~~Lr~~NE~L~~QlE~f~~dR  291 (790)
                      ..+++|.+.++++...|..||+++..+-
T Consensus       277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~  304 (511)
T PF09787_consen  277 EELKQERDHLQEEIQLLERQIEQLRAEL  304 (511)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777777775444433

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.16  E-value=32  Score=44.36  Aligned_cols=94  Identities=21%  Similarity=0.249  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH-HHH--------HhhhhhhhcccccchHhHHHHHH-HHHH
Q 003863          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI-LER--------KNDNKNAINMGSSSSQNLEMEVV-ELRR  228 (790)
Q Consensus       159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~-~~q--------~ee~~~~~~e~e~~~~~LE~Ev~-ELRr  228 (790)
                      ++++++.....+++.|..++..++++-..+...+.....- ...        .++..++....+..+..|+.+.. ++..
T Consensus       356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~  435 (1201)
T PF12128_consen  356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQE  435 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555554444322211 110        01111111112244455555544 3444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhh
Q 003863          229 LNKELQMEKRNLACKFSSMENQLT  252 (790)
Q Consensus       229 ~NkeLQ~EkreL~~KLd~ae~~~~  252 (790)
                      ...+++.+...+...+...+.++.
T Consensus       436 ~~~~~~~~~~~~~~~l~~l~~~~~  459 (1201)
T PF12128_consen  436 QLEELQEQREQLKSELAELKQQLK  459 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555544443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.07  E-value=20  Score=42.69  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDE  184 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE  184 (790)
                      ..||+..+.....|++.++..+.-.+..
T Consensus        52 ~eEleaeyd~~R~Eldqtkeal~q~~s~   79 (772)
T KOG0999|consen   52 LEELEAEYDLARTELDQTKEALGQYRSQ   79 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666665555666666555444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.01  E-value=12  Score=49.28  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhcCCCcccccchhhHHHH
Q 003863          670 LKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKI  717 (790)
Q Consensus       670 l~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~~Ip~~wmlD~gii~ki  717 (790)
                      +.+..+.+-.++..+..+..+-.+....+.++|||.+.    |.--+.
T Consensus      1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~----~~~~~~ 1058 (1486)
T PRK04863       1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS----GAEERA 1058 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc----cHHHHH
Confidence            33444444455566677888888889999999999865    665544

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=89.95  E-value=0.092  Score=57.67  Aligned_cols=6  Identities=50%  Similarity=0.694  Sum_probs=2.5

Q ss_pred             hhhhhh
Q 003863          446 PQFSAN  451 (790)
Q Consensus       446 ~~~~~~  451 (790)
                      +++|+|
T Consensus       163 A~Fy~N  168 (312)
T PF01213_consen  163 AQFYTN  168 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            344444

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.71  E-value=27  Score=38.92  Aligned_cols=61  Identities=16%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE  285 (790)
                      ..+..|+.+...++....+|..||=+|--.|++-|           ..+|-++-..++.|-.++..|..+|+
T Consensus       142 k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ-----------E~lvN~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  142 KKIERLEKEKSAKQEELERLRREKVDLENTLEQEQ-----------EALVNRLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555555555555555555556555555555443           22444444455555544444544444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.70  E-value=15  Score=45.07  Aligned_cols=115  Identities=25%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHH-------HhhhHHHhhhHHHHHHHHHHH
Q 003863          127 LDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRR-------VGMLEDEKTSLSEQLAALSVI  198 (790)
Q Consensus       127 I~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~k-------I~sLeaE~~rLq~qv~e~~~~  198 (790)
                      |.+=..++++.--||..|..++.++   +. ++.++..+.--.+|.+-|...       +..|+.+..+|.+++.+|- .
T Consensus        15 ~~~Ee~Ll~esa~~E~~~~~~i~~l---~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K-~   90 (717)
T PF09730_consen   15 EEREESLLQESASKEAYLQQRILEL---ENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK-F   90 (717)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3344567777778888887777765   33 444555555555555555444       4555555555555555542 1


Q ss_pred             HHH--Hhhhhhhhc-cc--c---cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863          199 LER--KNDNKNAIN-MG--S---SSSQNLEMEVVELRRLNKELQMEKRNLACKFS  245 (790)
Q Consensus       199 ~~q--~ee~~~~~~-e~--e---~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd  245 (790)
                      +++  -++....++ +|  +   ..++.=-+|...|+-.+++|++|..-|--+|+
T Consensus        91 rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle  145 (717)
T PF09730_consen   91 REARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE  145 (717)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  111111111 12  1   33444455666666666666665555444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=89.61  E-value=8.7  Score=39.51  Aligned_cols=172  Identities=19%  Similarity=0.190  Sum_probs=95.7

Q ss_pred             CCCCCccc----cccccCCCCcChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchh---HHHHHHHHHHhhhhHHHHH
Q 003863          104 QVHPNSYQ----THRRQSSGSRDLFLELDSLRSLL-QESKEREFKLQAELSEWKRNPK---VLELERELEAKKIENDEIV  175 (790)
Q Consensus       104 ~~~~~~~~----~~~~~~~~~~~~~~EI~~LR~~V-~eLqeRE~kLE~eLlEyKEQE~---I~ELq~qL~~k~~Ei~~L~  175 (790)
                      =+||-.|.    .-..+.+..+.-..++..|...+ ..|+.+..+- .-+-..++.=.   ..||=||+.+.=.|=..|-
T Consensus         8 i~ppr~~~~~~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~-~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL   86 (189)
T PF10211_consen    8 ILPPREWEEDGQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARE-TGICPVREELYSQCFDELIRQVTIDCPERGLLL   86 (189)
T ss_pred             hCCchhhhcCCeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHH
Confidence            35666663    21224455556677888888777 3344332211 11100022111   5677777777666555554


Q ss_pred             HHHhhhHHHhhhHHHHHHHHHHHHHHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863          176 RRVGMLEDEKTSLSEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL  254 (790)
Q Consensus       176 ~kI~sLeaE~~rLq~qv~e~~~~~~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~  254 (790)
                      .+|-.      +++.-+..|..+.+.. .-+++.--+.++...+|+.++.+|...+.+|+.+..+|..+++.++......
T Consensus        87 ~rvrd------e~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~  160 (189)
T PF10211_consen   87 LRVRD------EYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL  160 (189)
T ss_pred             HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44411      1122222222222210 0011111112344578888999999999999999999999999888766443


Q ss_pred             cccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863          255 AKASESDIISKIKAEALVLRHTNEDLSKQVEG  286 (790)
Q Consensus       255 ~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~  286 (790)
                      .. .   ...+..+|++.|+..|..|..||+.
T Consensus       161 ~~-~---~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  161 RQ-E---EEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HH-H---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 1   1235578999999999998888874

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=89.37  E-value=30  Score=38.47  Aligned_cols=169  Identities=21%  Similarity=0.236  Sum_probs=94.2

Q ss_pred             ccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-H----------HHHHHHHHHhhh-------------
Q 003863          115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-V----------LELERELEAKKI-------------  169 (790)
Q Consensus       115 ~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I----------~ELq~qL~~k~~-------------  169 (790)
                      .|+.....++.|-.+|.+-+..=++-..+||.++.-| -.+.+ |          ++|+.-++....             
T Consensus        60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~  139 (305)
T PF14915_consen   60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDV  139 (305)
T ss_pred             HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchH
Confidence            3666677888999999999988888888899998888 11111 2          233322221111             


Q ss_pred             -----hHHHHHHHHhhhHHHhhhHHHHHHHH-------HHHHH--H------Hhhhhhhhcc---cccchHhHHHHHHHH
Q 003863          170 -----ENDEIVRRVGMLEDEKTSLSEQLAAL-------SVILE--R------KNDNKNAINM---GSSSSQNLEMEVVEL  226 (790)
Q Consensus       170 -----Ei~~L~~kI~sLeaE~~rLq~qv~e~-------~~~~~--q------~ee~~~~~~e---~e~~~~~LE~Ev~EL  226 (790)
                           ...+|.++++.-|+.-+.|+.++-..       ..+.+  |      +.+....+..   .+..+..--+.-.-|
T Consensus       140 S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~  219 (305)
T PF14915_consen  140 SNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL  219 (305)
T ss_pred             HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                 23566666655555555555544332       22222  1      0111111111   124455555566667


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhcc----cC--hhhHHHHHHHHHHH----HhhhchhHHHH
Q 003863          227 RRLNKELQMEKRNLACKFSSMENQLTSLAK----AS--ESDIISKIKAEALV----LRHTNEDLSKQ  283 (790)
Q Consensus       227 Rr~NkeLQ~EkreL~~KLd~ae~~~~~~~~----~~--Es~~va~~~eE~~~----Lr~~NE~L~~Q  283 (790)
                      .-....||-||.=|...|+.|..++..-.+    .-  =.++|.++..|..+    |.+.|..|...
T Consensus       220 eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne  286 (305)
T PF14915_consen  220 EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINE  286 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            777888888888888888888877644221    11  03455555555544    55555555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.36  E-value=1.9  Score=44.04  Aligned_cols=80  Identities=25%  Similarity=0.303  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      +.+|+..+.....+|..|...+..|+.+...|.+.+.+..+....          +..-+-.|-.+..-|...+..|+.|
T Consensus       104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555554444331          1234455667777788889999999


Q ss_pred             Hhhhhhhhhh
Q 003863          237 KRNLACKFSS  246 (790)
Q Consensus       237 kreL~~KLd~  246 (790)
                      |.+|..|+=.
T Consensus       174 n~~Lv~Rwm~  183 (194)
T PF08614_consen  174 NRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.35  E-value=11  Score=46.58  Aligned_cols=165  Identities=20%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhchhHHHHHHHHHHhhh-------hHHHHHHHHhhhH
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQAELSEW------------KRNPKVLELERELEAKKI-------ENDEIVRRVGMLE  182 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy------------KEQE~I~ELq~qL~~k~~-------Ei~~L~~kI~sLe  182 (790)
                      |+..=|+.|+..+...+.+.-.|+.++..+            |-+..+..++..+..-+.       .++.-..+|+-|+
T Consensus       319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq  398 (775)
T PF10174_consen  319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ  398 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346779999999999999999998877554            222225555544443333       3344445555666


Q ss_pred             HHhhhHHHHHHHHHHHHHH--------------------Hhhhhh-------h-----h-c--ccccchHhHHHHHHHHH
Q 003863          183 DEKTSLSEQLAALSVILER--------------------KNDNKN-------A-----I-N--MGSSSSQNLEMEVVELR  227 (790)
Q Consensus       183 aE~~rLq~qv~e~~~~~~q--------------------~ee~~~-------~-----~-~--e~e~~~~~LE~Ev~ELR  227 (790)
                      .....|++++.+-..-...                    -+++..       .     + .  +-...+..+..|+.+|+
T Consensus       399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk  478 (775)
T PF10174_consen  399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK  478 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555555443321111                    011100       0     0 0  01145667777777888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh--HHHHHHHHHHHHhhhchhHHHHHHH
Q 003863          228 RLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEG  286 (790)
Q Consensus       228 r~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~--~va~~~eE~~~Lr~~NE~L~~QlE~  286 (790)
                      ..+..||-+..+....|..+...++++...-+-.  .+..+.=++...|+..++|..+++.
T Consensus       479 ~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k  539 (775)
T PF10174_consen  479 AKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK  539 (775)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8888888888888777777776666654432211  1223333444444555555555554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA03247 large tegument protein UL36; Provisional

Probab=89.11  E-value=0.65  Score=62.07  Aligned_cols=30  Identities=27%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 003863          671 KKMVSLSEKMERTVYALLRTRETLMRNCRE  700 (790)
Q Consensus       671 ~Km~~l~dKvErsv~~LeRtRd~a~~ryk~  700 (790)
                      ..|.-|++-|++.+.+|-+||.-.+.+-..
T Consensus      3109 salAlLi~ACr~i~r~lr~TR~~L~~~~~~ 3138 (3151)
T PHA03247       3109 SALAVLIEACRRIRRQLRRTRHALLDRSGA 3138 (3151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            346678889999999999999877665443

>PHA03211 serine/threonine kinase US3; Provisional

Probab=89.06  E-value=0.39  Score=54.82  Aligned_cols=10  Identities=0%  Similarity=0.126  Sum_probs=5.3

Q ss_pred             cccccchhHH
Q 003863          519 GVVQRAPQVV  528 (790)
Q Consensus       519 ~kv~RsPevv  528 (790)
                      ..+.+.-++.
T Consensus        66 ~~~~~~~~~~   75 (461)
T PHA03211         66 ARLCQIQELL   75 (461)
T ss_pred             HHHHHHHHHH
Confidence            4455555555

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=88.90  E-value=23  Score=42.03  Aligned_cols=46  Identities=24%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             HHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863          270 ALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (790)
Q Consensus       270 ~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~  315 (790)
                      |..+...-+.+..+++.+...+..-.+.+..+|-...-.|..+..+
T Consensus       378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~  423 (569)
T PRK04778        378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY  423 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555557777777777777777776666655554344444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.85  E-value=34  Score=37.88  Aligned_cols=145  Identities=23%  Similarity=0.284  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchh------HHHHHHHHHHhhhhHHHHHH-------HHhhhHHHhhhHHHHHHH
Q 003863          128 DSLRSLLQESKEREFKLQAELSEWKRNPK------VLELERELEAKKIENDEIVR-------RVGMLEDEKTSLSEQLAA  194 (790)
Q Consensus       128 ~~LR~~V~eLqeRE~kLE~eLlEyKEQE~------I~ELq~qL~~k~~Ei~~L~~-------kI~sLeaE~~rLq~qv~e  194 (790)
                      +.|+..+...+.||..++..+- -++.|.      +......+.........++.       +|..|......|+.||.-
T Consensus       142 eKlK~l~eQye~rE~~~~~~~k-~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~  220 (309)
T PF09728_consen  142 EKLKSLIEQYELREEHFEKLLK-QKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNL  220 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777766665332 233333      33333444444456666666       899999999999999988


Q ss_pred             HHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863          195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR  274 (790)
Q Consensus       195 ~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr  274 (790)
                      |.-=-.+=+..+..-   ...-...-.|+..|...++.|+-|+..+..|.+.+...+.            .+-+|...+.
T Consensus       221 Y~~Kf~efq~tL~kS---Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~------------~m~eer~~~~  285 (309)
T PF09728_consen  221 YSEKFEEFQDTLNKS---NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI------------EMAEERQKLE  285 (309)
T ss_pred             HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHH
Confidence            874433322222221   1344556678888999999999999999999998764431            2334555444


Q ss_pred             hhchhHHHHHHHHh
Q 003863          275 HTNEDLSKQVEGLQ  288 (790)
Q Consensus       275 ~~NE~L~~QlE~f~  288 (790)
                      ...+.+..+++.|+
T Consensus       286 ~~~~~~~~k~~kLe  299 (309)
T PF09728_consen  286 KELEKLKKKIEKLE  299 (309)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445555555543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.79  E-value=11  Score=42.13  Aligned_cols=41  Identities=12%  Similarity=0.282  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhhchhHHHHHHHH---hhhhhchHHHHH-HHHHhh
Q 003863          265 KIKAEALVLRHTNEDLSKQVEGL---QMSRLNEVEELA-YLRWVN  305 (790)
Q Consensus       265 ~~~eE~~~Lr~~NE~L~~QlE~f---~~dR~~dvEELv-~LR~~N  305 (790)
                      .+..|-+..|+.-..|..+|..+   ...|--|++.|+ ..||..
T Consensus       158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~  202 (319)
T PF09789_consen  158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK  202 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence            34566677777777777777733   335667788888 334433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.64  E-value=4.2  Score=44.85  Aligned_cols=28  Identities=32%  Similarity=0.293  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          224 VELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       224 ~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      .+.-+....++.+..++...+++.+.++
T Consensus        95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   95 EEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.60  E-value=29  Score=40.26  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (790)
Q Consensus       169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~  200 (790)
                      -++..|..+|-.|+.|+.+|...++.+-.+..
T Consensus       297 le~Enlqmr~qqleeentelRs~~arlksl~d  328 (502)
T KOG0982|consen  297 LEKENLQMRDQQLEEENTELRSLIARLKSLAD  328 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38889999999999999999988887765555

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.56  E-value=8  Score=42.58  Aligned_cols=140  Identities=19%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-H----HHHHHHHHHhhhhHHHHHHHHhhh----HHHhhhHHHHHHHHH
Q 003863          126 ELDSLRSLLQESKEREFKLQAELSEWKRNPK-V----LELERELEAKKIENDEIVRRVGML----EDEKTSLSEQLAALS  196 (790)
Q Consensus       126 EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I----~ELq~qL~~k~~Ei~~L~~kI~sL----eaE~~rLq~qv~e~~  196 (790)
                      =...|..+...|++.-..|+.+...+.+... |    -+|......-..++..|+.....+    +.+-+.+++++++..
T Consensus       143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~  222 (325)
T PF08317_consen  143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQK  222 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence            3556666666666666666665555522211 2    222222222222333333333222    233333333333332


Q ss_pred             HHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhh
Q 003863          197 VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHT  276 (790)
Q Consensus       197 ~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~  276 (790)
                      .-.+.          ..+.+.+|+.+..+++....++..++.++...+..++.........|..+ |..++++++.|-..
T Consensus       223 ~~i~~----------~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~E-v~~Lk~~~~~Le~~  291 (325)
T PF08317_consen  223 EEIEA----------KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSE-VKRLKAKVDALEKL  291 (325)
T ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHH
Confidence            22221          11233444444444444444444455555555555554444444556565 44788888888753

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=88.48  E-value=55  Score=40.09  Aligned_cols=112  Identities=20%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH------------Hhhhhhhhccc---ccchHhHHHH
Q 003863          158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER------------KNDNKNAINMG---SSSSQNLEME  222 (790)
Q Consensus       158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q------------~ee~~~~~~e~---e~~~~~LE~E  222 (790)
                      ..+|-.+.....+...+..+|..|+..+..|.+++.....-.++            ++.+...+.++   ++.++-||.+
T Consensus       516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk  595 (786)
T PF05483_consen  516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENK  595 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence            34444444444556666667788888888887666532221111            11122222222   2445555555


Q ss_pred             HHHHHH-------HHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863          223 VVELRR-------LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR  274 (790)
Q Consensus       223 v~ELRr-------~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr  274 (790)
                      +-.||+       ...+||.+|.-|..++-+--.+++.+    | --|.+++.|+..+.
T Consensus       596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~----e-ikVn~L~~E~e~~k  649 (786)
T PF05483_consen  596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY----E-IKVNKLQEELENLK  649 (786)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHH
Confidence            555554       66789999998888875433444332    1 13556777777665

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=88.45  E-value=0.14  Score=61.49  Aligned_cols=38  Identities=29%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhh
Q 003863          268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN  305 (790)
Q Consensus       268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~N  305 (790)
                      .+++.|..++..|...++.+...++....|.-.||+.+
T Consensus       384 ~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  384 RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666665555555555444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=88.42  E-value=12  Score=38.85  Aligned_cols=73  Identities=26%  Similarity=0.340  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhh-hhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~----I~ELq~qL~~k~-~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      +..||..||..++.+++.+..++..+.+. .+...    +.-|+.-...++ .|.+.|..+++.++.+-..-...+..+
T Consensus        66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L  144 (194)
T PF15619_consen   66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL  144 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888888888888888777655 22211    333333322222 256666666666665544444444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.31  E-value=11  Score=44.89  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhh-hHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863          157 VLELERELEAKKI-ENDEIVRRVGMLEDEKTSLSEQLAA  194 (790)
Q Consensus       157 I~ELq~qL~~k~~-Ei~~L~~kI~sLeaE~~rLq~qv~e  194 (790)
                      ..++..+|+..-. ....+.-+|+.|++.+.+|.+++.+
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e  253 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE  253 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556555443 3344677888888888888888873

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=88.28  E-value=17  Score=39.60  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH------HHHH-HHhhhhh
Q 003863          135 QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS------VILE-RKNDNKN  207 (790)
Q Consensus       135 ~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~------~~~~-q~ee~~~  207 (790)
                      -+++.+=..++.||-|+.|-  -+|++.+|.   .+++-++.+..-|++++++|.-++...-      .+.. |.+.++.
T Consensus        23 ~~ykq~f~~~reEl~EFQeg--SrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le   97 (333)
T KOG1853|consen   23 HEYKQHFLQMREELNEFQEG--SREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE   97 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777788887332  223333332   2344455555566666666654332110      0000 1222222


Q ss_pred             hhcccccch-HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863          208 AINMGSSSS-QNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (790)
Q Consensus       208 ~~~e~e~~~-~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~  249 (790)
                      .|.---..+ ..|-.-|.||..+|..|+--+|.-+.-|+.-++
T Consensus        98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeq  140 (333)
T KOG1853|consen   98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQ  140 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHH
Confidence            221100111 223445666666677776666654444444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=88.19  E-value=24  Score=38.84  Aligned_cols=38  Identities=18%  Similarity=0.087  Sum_probs=20.4

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      ..+-+.+.++.++++....++.+...+...++.++..+
T Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~  233 (423)
T TIGR01843       196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLER  233 (423)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555666655555555555555555554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.00  E-value=15  Score=36.58  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=18.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863          160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQ  191 (790)
Q Consensus       160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q  191 (790)
                      ..+.|+....+.+.|+.+|.+|+++.+-.|+.
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~   39 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQEN   39 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence            34445555556666666666666665555543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.99  E-value=48  Score=42.32  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccC--hhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhch
Q 003863          217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKAS--ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNE  294 (790)
Q Consensus       217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~--Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~d  294 (790)
                      ++.-.+|.-+++....+|.+...+..+-++++..+.+...+-  +-.-+.++..|++.-+..-.+|.+++..+..+.-.-
T Consensus       803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~  882 (1141)
T KOG0018|consen  803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI  882 (1141)
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            777777888888888888888888887777777666552221  122455777888888888888888888887776543


Q ss_pred             HHHHHHH--HHhhHHHhhhhhhc
Q 003863          295 VEELAYL--RWVNSCLRDELQNS  315 (790)
Q Consensus       295 vEELv~L--R~~NacLR~EL~~~  315 (790)
                      -..+..+  -|.|+-....|.+.
T Consensus       883 es~ie~~~~er~~lL~~ckl~~I  905 (1141)
T KOG0018|consen  883 ESKIERKESERHNLLSKCKLEDI  905 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccc
Confidence            3333321  45454333344443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.91  E-value=54  Score=40.89  Aligned_cols=43  Identities=9%  Similarity=0.086  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHH
Q 003863          263 ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSC  307 (790)
Q Consensus       263 va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~Nac  307 (790)
                      .+++.+-++.|.-.--.++.|++-|+.-++  -+|-...|-|..|
T Consensus       419 L~~a~ekld~mgthl~mad~Q~s~fk~Lke--~aegsrrraIeQc  461 (1265)
T KOG0976|consen  419 LQEALEKLDLMGTHLSMADYQLSNFKVLKE--HAEGSRRRAIEQC  461 (1265)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhHHHHHH--hhhhhHhhHHHHH
Confidence            456677777777666678888776665544  3333333445555

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.74  E-value=26  Score=42.72  Aligned_cols=37  Identities=19%  Similarity=0.075  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA  193 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~  193 (790)
                      +..+..-+...+.+++.++..+..+.....+++.++.
T Consensus       160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~  196 (716)
T KOG4593|consen  160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELD  196 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555667777666666655555554443

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.39  E-value=12  Score=42.25  Aligned_cols=16  Identities=13%  Similarity=-0.199  Sum_probs=6.8

Q ss_pred             HHHHHHHhHHHHhhhc
Q 003863          603 DVVAFVKWLDDELGFL  618 (790)
Q Consensus       603 dlv~Fv~wlD~eL~~L  618 (790)
                      +|..=...|+.+...|
T Consensus       243 eL~~G~~kL~~~~etL  258 (365)
T KOG2391|consen  243 ELNIGKQKLVAMKETL  258 (365)
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            3333344444444444

>PHA03247 large tegument protein UL36; Provisional

Probab=87.33  E-value=0.79  Score=61.32  Aligned_cols=7  Identities=29%  Similarity=0.482  Sum_probs=2.9

Q ss_pred             CchHHHH
Q 003863          664 VPCDLAL  670 (790)
Q Consensus       664 ~pc~~al  670 (790)
                      ++.+.+|
T Consensus      3092 v~a~~~l 3098 (3151)
T PHA03247       3092 LSANAAL 3098 (3151)
T ss_pred             cchhhHH
Confidence            4444433

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=87.24  E-value=0.44  Score=59.41  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=9.5

Q ss_pred             hHHhhhhhheeecccCC
Q 003863          751 MLLQGVRFAFRIHQFAG  767 (790)
Q Consensus       751 lL~qgvrFAfRvhqFAG  767 (790)
                      +||..+|.-==||-|.|
T Consensus       266 ~l~~~ird~ny~Ylf~~  282 (2365)
T COG5178         266 MLWESIRDVNYVYLFSG  282 (2365)
T ss_pred             ccHHHhccccEEEEecC
Confidence            56666665555555543

>PF15195 TMEM210: TMEM210 family

Probab=87.23  E-value=0.35  Score=45.22  Aligned_cols=8  Identities=0%  Similarity=0.115  Sum_probs=3.2

Q ss_pred             ccccCCCC
Q 003863          436 SSQKYDFD  443 (790)
Q Consensus       436 ~~~KY~~~  443 (790)
                      +++.|+.-
T Consensus        55 lv~~~GvQ   62 (116)
T PF15195_consen   55 LVGHFGVQ   62 (116)
T ss_pred             hhhccccc
Confidence            33444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.11  E-value=14  Score=38.77  Aligned_cols=80  Identities=13%  Similarity=0.104  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhhHHHhhhHHHHHHHHHH-----HHHHHhhhhhhh-cccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863          171 NDEIVRRVGMLEDEKTSLSEQLAALSV-----ILERKNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF  244 (790)
Q Consensus       171 i~~L~~kI~sLeaE~~rLq~qv~e~~~-----~~~q~ee~~~~~-~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL  244 (790)
                      +-.+...|..+.++++.|+.++.+...     .....+ ..+.+ .+.+.++..|..++..+++.+.+++....++...|
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQ-QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666666665544     111100 01111 11134455555555555555555555555555555


Q ss_pred             hhhhhhh
Q 003863          245 SSMENQL  251 (790)
Q Consensus       245 d~ae~~~  251 (790)
                      +.....+
T Consensus       101 ~~~~~~l  107 (302)
T PF10186_consen  101 EQRRSRL  107 (302)
T ss_pred             HHHHHHH
Confidence            5444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=87.08  E-value=6.9  Score=40.78  Aligned_cols=106  Identities=21%  Similarity=0.136  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH--HHHHH--
Q 003863          128 DSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS--VILER--  201 (790)
Q Consensus       128 ~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~--~~~~q--  201 (790)
                      +.|+--.++|-.|=.+.|.+-+-. -++.. ++|.-++|+.--.||..|+.--.-|+.+|++|.+.+--+.  +.+.+  
T Consensus        12 ell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl   91 (195)
T PF10226_consen   12 ELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL   91 (195)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence            345555566666767777776666 66666 8899999999999999999999999999999887663222  11111  


Q ss_pred             --H-hh-------hhhhhccc-ccchHhHHHHHHHHHHHHHHH
Q 003863          202 --K-ND-------NKNAINMG-SSSSQNLEMEVVELRRLNKEL  233 (790)
Q Consensus       202 --~-ee-------~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeL  233 (790)
                        + |.       ++..+... +++|++||....+|-|.|.+|
T Consensus        92 arEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL  134 (195)
T PF10226_consen   92 AREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLEL  134 (195)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence              0 11       12222222 588899998888888888766

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.87  E-value=57  Score=39.17  Aligned_cols=53  Identities=25%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             HHHHHHhhhchhHHHHHHHHhhhhhchH----------HH----HHHHHHhhHHHhhhhhhcccccC
Q 003863          268 AEALVLRHTNEDLSKQVEGLQMSRLNEV----------EE----LAYLRWVNSCLRDELQNSCSTTN  320 (790)
Q Consensus       268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dv----------EE----Lv~LR~~NacLR~EL~~~~sa~d  320 (790)
                      =||.+|||++..|.+.++.+++.-++++          ||    |..-|=-.-.||.||..|.++-|
T Consensus       194 VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~  260 (772)
T KOG0999|consen  194 VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAED  260 (772)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence            4677777777777777777666543221          11    11112222358888888855544

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.80  E-value=54  Score=41.69  Aligned_cols=70  Identities=20%  Similarity=0.333  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhc------hh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863          125 LELDSLRSLLQESKER-------EFKLQAELSEWKRN------PK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeR-------E~kLE~eLlEyKEQ------E~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~  190 (790)
                      -+++.++..|.+|++-       ..=|+.||..|+-|      |+ |..|+.+|.--..|.++..-+++-|..||..|+-
T Consensus       257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~  336 (1195)
T KOG4643|consen  257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV  336 (1195)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4555566666666655       44456777777333      33 7777777777777778888888888888877775


Q ss_pred             HHHH
Q 003863          191 QLAA  194 (790)
Q Consensus       191 qv~e  194 (790)
                      +-+.
T Consensus       337 q~eq  340 (1195)
T KOG4643|consen  337 QKEQ  340 (1195)
T ss_pred             HHHH
Confidence            5543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.60  E-value=25  Score=38.81  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      ...+.++..++.++|+...+|+.+...+..+++....+.
T Consensus       215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            377888899999999999999999988888887665444

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.50  E-value=18  Score=45.51  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH-HHH-------hh--hhchh------HHHHHHHHHHhhhhHHHHHHHHhhhHHHh
Q 003863          122 DLFLELDSLRSLLQESKEREFKLQA-ELS-------EW--KRNPK------VLELERELEAKKIENDEIVRRVGMLEDEK  185 (790)
Q Consensus       122 ~~~~EI~~LR~~V~eLqeRE~kLE~-eLl-------Ey--KEQE~------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~  185 (790)
                      .+.++|+.|+-.|+.+.+|+..+.. +++       +|  ..++.      ..-+..+++....++.-+.-++..|+.+.
T Consensus       206 ~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~  285 (1072)
T KOG0979|consen  206 RLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEK  285 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH
Confidence            3478888888888888888887762 333       33  22222      12233333333334444455555555555


Q ss_pred             hhHHHHHHHHHHHHHH----HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863          186 TSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL  254 (790)
Q Consensus       186 ~rLq~qv~e~~~~~~q----~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~  254 (790)
                      ..+.+++.........    .++....-.++++.+..+-.+.+.|++.-...|...-....-+..+|.-+...
T Consensus       286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~  358 (1072)
T KOG0979|consen  286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET  358 (1072)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            5555555444332221    00000000112233333334444444444444555555566666666655443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=86.46  E-value=0.21  Score=59.95  Aligned_cols=129  Identities=26%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhc-h---h-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW---KRN-P---K-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (790)
Q Consensus       119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---KEQ-E---~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~  190 (790)
                      ++.++..++..|+.....|.++-..||.+|..+   +.| +   . |.+|+..+.....+++.|...+..|+++...|+.
T Consensus       326 d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~  405 (713)
T PF05622_consen  326 DLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEE  405 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555666666666665   111 1   1 5555555555444444443333333333333322


Q ss_pred             HHHHHH----HHHHHHhhh----------hhhhcccccchHhHHHHH--HHHHHHHHHHHHHHhhhhhhhhhh
Q 003863          191 QLAALS----VILERKNDN----------KNAINMGSSSSQNLEMEV--VELRRLNKELQMEKRNLACKFSSM  247 (790)
Q Consensus       191 qv~e~~----~~~~q~ee~----------~~~~~e~e~~~~~LE~Ev--~ELRr~NkeLQ~EkreL~~KLd~a  247 (790)
                      +.....    .+.+..++.          ...+.........|..|+  .++|....+||+||.-|..+.+.+
T Consensus       406 eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~  478 (713)
T PF05622_consen  406 EKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEES  478 (713)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccc
Confidence            211111    111110000          000111123344454444  478888888999999887776665

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.34  E-value=16  Score=35.38  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=23.4

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      +.|..|..++.+++.....|+.+..-....|+..+...
T Consensus        59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw   96 (132)
T PF07926_consen   59 KELQQLREELQELQQEINELKAEAESAKAELEESEASW   96 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55666666666666666666666666666666555443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK01156 chromosome segregation protein; Provisional

Probab=86.05  E-value=48  Score=41.02  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             cCCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 003863          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQA  146 (790)
Q Consensus       116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~  146 (790)
                      |......+..+|..|+.-++.+..+-.+++.
T Consensus       474 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~  504 (895)
T PRK01156        474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKK  504 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556777777777777666655554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.74  E-value=66  Score=38.63  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=22.3

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a  247 (790)
                      +.+.+++.++..--.....+=.+-..|+.||..-
T Consensus       360 k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  360 KEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666666666666666666666543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=85.58  E-value=75  Score=37.77  Aligned_cols=85  Identities=16%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             cccccCCCCcChHHHHHHHHHHHHHHHHHH------------HHHHHHHHhh-----hhchh--------------HHHH
Q 003863          112 THRRQSSGSRDLFLELDSLRSLLQESKERE------------FKLQAELSEW-----KRNPK--------------VLEL  160 (790)
Q Consensus       112 ~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE------------~kLE~eLlEy-----KEQE~--------------I~EL  160 (790)
                      ....|.-...+...+|..|+..+......=            ..++.++..+     +|..+              +..+
T Consensus       243 ~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~  322 (569)
T PRK04778        243 VEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA  322 (569)
T ss_pred             HHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            444677666778889888888887732222            2223333333     22222              3344


Q ss_pred             HHHHHHhhhhHHHHHHH----------HhhhHHHhhhHHHHHHHHH
Q 003863          161 ERELEAKKIENDEIVRR----------VGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       161 q~qL~~k~~Ei~~L~~k----------I~sLeaE~~rLq~qv~e~~  196 (790)
                      +.++..-..|++.|++.          +..++.+.+.+++++....
T Consensus       323 ~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~  368 (569)
T PRK04778        323 KEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT  368 (569)
T ss_pred             HHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555577777776          6667766666666666443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.54  E-value=62  Score=37.11  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=25.6

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863          120 SRDLFLELDSLRSLLQESKEREFKLQAELSE  150 (790)
Q Consensus       120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlE  150 (790)
                      ...+..++..|+..+..|+.+..+|+.++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        92 NGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456889999999999999999999887753

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.51  E-value=37  Score=35.34  Aligned_cols=78  Identities=24%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh
Q 003863          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTS  187 (790)
Q Consensus       116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r  187 (790)
                      ....+.+...|..+|..-+..+++.-..|+.+|..| ++...       +..++.+|..-.-|-..|.+++..++.|...
T Consensus        46 ~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde  125 (201)
T PF13851_consen   46 NEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE  125 (201)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788999999999999999999999999999 55544       4444555555555555666666666666655


Q ss_pred             HHHHHH
Q 003863          188 LSEQLA  193 (790)
Q Consensus       188 Lq~qv~  193 (790)
                      |.....
T Consensus       126 L~~kf~  131 (201)
T PF13851_consen  126 LYRKFE  131 (201)
T ss_pred             HHHHHH
Confidence            555444

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=85.23  E-value=8.5  Score=36.10  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh----hhchh-----HHHH---HHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          128 DSLRSLLQESKEREFKLQAELSEW----KRNPK-----VLEL---ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       128 ~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-----I~EL---q~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      ..+...+..|..++..|+..+..|    ++.+.     +...   .+....+..+|..|..+|+.|+++..++++.|..|
T Consensus        28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~  107 (126)
T PF13863_consen   28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY  107 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556688999999999877777    66555     2222   22333456699999999999999999999999888


Q ss_pred             HH
Q 003863          196 SV  197 (790)
Q Consensus       196 ~~  197 (790)
                      ..
T Consensus       108 ~~  109 (126)
T PF13863_consen  108 KK  109 (126)
T ss_pred             HH
Confidence            64

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=85.14  E-value=14  Score=45.18  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHhh-hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863          125 LELDSLRSLLQESKERE-------FKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL  192 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeRE-------~kLE~eLlEy-KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv  192 (790)
                      .++..|+.-+++...+.       ..++..|+-. +|--.    .-+|+++|..+.+++..+.-+..+|+..-.-++.++
T Consensus        49 e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l  128 (916)
T KOG0249|consen   49 EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL  128 (916)
T ss_pred             HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence            44555555554443332       3344444444 44444    668999999999988888888888888877777777


Q ss_pred             HHHHHHHH---------HH-hhhhhhh---cccccchHh----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 003863          193 AALSVILE---------RK-NDNKNAI---NMGSSSSQN----LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA  255 (790)
Q Consensus       193 ~e~~~~~~---------q~-ee~~~~~---~e~e~~~~~----LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~  255 (790)
                      ....++-.         |. .+..+..   .+++.++..    ++-+..||.|++..+.+.-..-..=.++++..+.-- 
T Consensus       129 ~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlh-  207 (916)
T KOG0249|consen  129 QQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLH-  207 (916)
T ss_pred             HhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHH-
Confidence            66665222         11 1112222   122344444    444455566666555554332222222222111000 


Q ss_pred             ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchH
Q 003863          256 KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV  295 (790)
Q Consensus       256 ~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dv  295 (790)
                          ..-...+.++.+.|-++-+.+.+|++.++.+++...
T Consensus       208 ----lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~  243 (916)
T KOG0249|consen  208 ----LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR  243 (916)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                001123466677777777777777776666655433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.04  E-value=52  Score=34.27  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=15.3

Q ss_pred             hhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863          259 ESDIISKIKAEALVLRHTNEDLSKQVE  285 (790)
Q Consensus       259 Es~~va~~~eE~~~Lr~~NE~L~~QlE  285 (790)
                      |..-+..+..++..|..+...|...|.
T Consensus       162 e~kK~~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  162 EKKKHKEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444566666666666666655554

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.93  E-value=54  Score=36.46  Aligned_cols=126  Identities=22%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhh--hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQ----------------AELSEW--KRNPK-VLELERELEAKKIENDEIVRRVGMLED  183 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE----------------~eLlEy--KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLea  183 (790)
                      -..-+..|+..+.+++++=.+-=                .++|.-  -+++. +.+|++.+..+.-++..++..+..|+.
T Consensus        75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~  154 (302)
T PF09738_consen   75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE  154 (302)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677888888877654421                122221  44444 889999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHhh-----hhhhh-----------------cc---c-ccc-hHhHHHHHHHHHHHHHHHHHH
Q 003863          184 EKTSLSEQLAALSVILERKND-----NKNAI-----------------NM---G-SSS-SQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       184 E~~rLq~qv~e~~~~~~q~ee-----~~~~~-----------------~e---~-e~~-~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      +...|+++|.+...+.+++=-     +...+                 .|   + +.. -+-|.+.+..|=-.+++|+.|
T Consensus       155 e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~q  234 (302)
T PF09738_consen  155 ELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQ  234 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999888766664100     10000                 00   0 111 234555555555666777777


Q ss_pred             Hhhhhhhhhhhh
Q 003863          237 KRNLACKFSSME  248 (790)
Q Consensus       237 kreL~~KLd~ae  248 (790)
                      .+.|...|+..+
T Consensus       235 v~klk~qLee~~  246 (302)
T PF09738_consen  235 VRKLKLQLEERQ  246 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            777777776543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.58  E-value=45  Score=44.24  Aligned_cols=54  Identities=15%  Similarity=0.096  Sum_probs=27.6

Q ss_pred             HhhhhHHHHHHHHHHhhhccc--chHHHHHHHH-------hHHHHhhhccchhhhhhhcCCCc
Q 003863          579 VATQGEFVNSLIREVNNAVYQ--NIEDVVAFVK-------WLDDELGFLVDERAVLKHFDWPE  632 (790)
Q Consensus       579 v~~~~~~I~~L~~eI~~~~~~--dm~dlv~Fv~-------wlD~eL~~L~DEraVL~~F~~Pe  632 (790)
                      +..++.-|..|-..+..+.|.  +.+.+..=+.       -+++++--|+|-.++-.||+|-.
T Consensus       913 ~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~  975 (1486)
T PRK04863        913 VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYED  975 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            444455555555555555442  2233332222       23333444777788888887654

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=84.55  E-value=7.1  Score=35.83  Aligned_cols=71  Identities=24%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchhHHHHHHHHHH------------hhhhHHHHHHHHhhhHHHh
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW---KRNPKVLELERELEA------------KKIENDEIVRRVGMLEDEK  185 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---KEQE~I~ELq~qL~~------------k~~Ei~~L~~kI~sLeaE~  185 (790)
                      .....||..|+..+..|+..-..|.++=++.   +|   +..|+.+|..            -..++..|+.++..|+.+|
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e---L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en   91 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE---LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN   91 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346777777777777776666665432221   21   3344444442            2348899999999999999


Q ss_pred             hhHHHHHHH
Q 003863          186 TSLSEQLAA  194 (790)
Q Consensus       186 ~rLq~qv~e  194 (790)
                      ..|+.+++|
T Consensus        92 ~~L~~~~~e  100 (100)
T PF01486_consen   92 NQLRQKIEE  100 (100)
T ss_pred             HHHHHHhcC
Confidence            999988753

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=84.51  E-value=0.3  Score=60.13  Aligned_cols=148  Identities=22%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----------KRNPK-VLELERELEAKKIENDEIVRRVGMLED  183 (790)
Q Consensus       116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-----------KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLea  183 (790)
                      +.....++..+|+.|+..-..|..-...|+.++.++           -+.|. ++.|+.+|..-...++.....++-|..
T Consensus       129 h~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~  208 (859)
T PF01576_consen  129 HQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTE  208 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666666666666666666666666666655           11112 445555555555555555555555555


Q ss_pred             HhhhHHHHHHHHHHHHHHH------------------hh-------hhhhhcccccchHhHHHHHHHHHHHHHHHHHHHh
Q 003863          184 EKTSLSEQLAALSVILERK------------------ND-------NKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR  238 (790)
Q Consensus       184 E~~rLq~qv~e~~~~~~q~------------------ee-------~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekr  238 (790)
                      .+.+|+.++.++....+..                  ++       ..+....+...++.|+.++..||-.+.+-+..+.
T Consensus       209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~  288 (859)
T PF01576_consen  209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS  288 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            5555555555554333310                  00       0111122347788888888888888888888888


Q ss_pred             hhhhhhhhhhhhhhhhcccChhhHH
Q 003863          239 NLACKFSSMENQLTSLAKASESDII  263 (790)
Q Consensus       239 eL~~KLd~ae~~~~~~~~~~Es~~v  263 (790)
                      +|-..|..+...+..+-.--|.+.+
T Consensus       289 ~l~~qlsk~~~El~~~k~K~e~e~~  313 (859)
T PF01576_consen  289 ELERQLSKLNAELEQWKKKYEEEAE  313 (859)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8888888777766655444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=84.48  E-value=1.4  Score=53.76  Aligned_cols=14  Identities=0%  Similarity=-0.038  Sum_probs=9.7

Q ss_pred             chhHHHHHHhhccc
Q 003863          524 APQVVEFYHSLMKR  537 (790)
Q Consensus       524 sPevvelYrsL~~r  537 (790)
                      .+.+..|||...+-
T Consensus       393 ~~~lk~l~wdk~~~  406 (833)
T KOG1922|consen  393 KNKLKPLHWDKTRG  406 (833)
T ss_pred             CCCCCCccccccCC
Confidence            46677788877653

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=84.24  E-value=52  Score=33.63  Aligned_cols=189  Identities=17%  Similarity=0.213  Sum_probs=88.5

Q ss_pred             CCCccccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchh-HHHHHHHHHHhhhhHHHHH
Q 003863          106 HPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW---------KRNPK-VLELERELEAKKIENDEIV  175 (790)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------KEQE~-I~ELq~qL~~k~~Ei~~L~  175 (790)
                      +++.|...+.|.   ..++.-|..|...+..+-.+...|-..+.+|         -|.+. +..+=.++..-...+..+-
T Consensus        22 ~D~~F~~~~~~~---~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~   98 (236)
T PF09325_consen   22 PDEWFEEIKDYV---DKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELL   98 (236)
T ss_pred             CCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence            344555433343   3456677777777777777777777777777         12221 2222222222111221111


Q ss_pred             HHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 003863          176 RRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA  255 (790)
Q Consensus       176 ~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~  255 (790)
                      .  ..-..+...|.+-+.+|.....--++++.+-......+..++.++.--|.....|......=..|++.++..+..+.
T Consensus        99 ~--~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~  176 (236)
T PF09325_consen   99 E--EQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAE  176 (236)
T ss_pred             H--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence            1  11233444566666666655553222211111111112222222222222222222221111344444444442221


Q ss_pred             ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHH
Q 003863          256 KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCL  308 (790)
Q Consensus       256 ~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacL  308 (790)
                           .-+..++.++.   ..++.+..+++.|+..|..|+...+. .|++..+
T Consensus       177 -----~~~~~~~~~~~---~is~~~k~E~~rf~~~k~~d~k~~l~-~~~~~~i  220 (236)
T PF09325_consen  177 -----RRVEQAKDEFE---EISENIKKELERFEKEKVKDFKSMLE-EYAESQI  220 (236)
T ss_pred             -----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence                 12223343333   55678888999999999999988885 5566444

This is the C-terminal dimerisation domain [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=84.20  E-value=58  Score=43.84  Aligned_cols=40  Identities=28%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~  252 (790)
                      ...-..||.|+.++...+..|..+|+.|--+++..=+.++
T Consensus      1098 ~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~ 1137 (1822)
T KOG4674|consen 1098 SEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSA 1137 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3556778888888888888888888888888876655544

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.02  E-value=21  Score=36.83  Aligned_cols=120  Identities=11%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--Hhhh
Q 003863          130 LRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--KNDN  205 (790)
Q Consensus       130 LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q--~ee~  205 (790)
                      ++..|..+-++-..=+.-|..| ++.+. +.+++..+..-.+.-..|.+++..++.+..+++.++......-..  -.++
T Consensus        10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a   89 (221)
T PF04012_consen   10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREA   89 (221)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3444444444433344444444 66666 888888888888888888888888888888888777544321110  0111


Q ss_pred             hhhhc-----------c---cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863          206 KNAIN-----------M---GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (790)
Q Consensus       206 ~~~~~-----------e---~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~  249 (790)
                      +.+..           .   ....+..|...+.+|+....+++.++..|.-+...|++
T Consensus        90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a  147 (221)
T PF04012_consen   90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA  147 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111           1   12445555555555566666666666666666655554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=83.81  E-value=60  Score=41.26  Aligned_cols=38  Identities=21%  Similarity=0.045  Sum_probs=28.6

Q ss_pred             ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      .++....+||.++.|++...+.++.+.++-..|+..-.
T Consensus       273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~  310 (1072)
T KOG0979|consen  273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKF  310 (1072)
T ss_pred             hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888888888888888888888877766665443

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=83.76  E-value=72  Score=39.05  Aligned_cols=124  Identities=21%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             ccCCCCCCCCCCccccccccCCCCcChH-HHHHHHHHHHHHHHHHH-HHHHHHHHhh--------hhchh-----HHHHH
Q 003863           97 ACSMNPAQVHPNSYQTHRRQSSGSRDLF-LELDSLRSLLQESKERE-FKLQAELSEW--------KRNPK-----VLELE  161 (790)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~EI~~LR~~V~eLqeRE-~kLE~eLlEy--------KEQE~-----I~ELq  161 (790)
                      +|+.++.++.-..|     -..+..|+. .+++.||..+.+||+.. .+|+ ++++|        ..+..     |.+.+
T Consensus       136 l~~~l~g~~~~~~~-----~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle-kv~~~~~~I~~l~~~Lg~~~~~~vt~~~  209 (660)
T KOG4302|consen  136 LCEELGGPEDLPSF-----LIADESDLSLEKLEELREHLNELQKEKSDRLE-KVLELKEEIKSLCSVLGLDFSMTVTDVE  209 (660)
T ss_pred             HHHHhcCCccCCcc-----cccCcccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcccchhhhh
Confidence            47777777332222     223344555 89999999999998654 4444 34444        22222     44555


Q ss_pred             HHHHHhh---------hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------Hhhhhhhh----ccc-------c
Q 003863          162 RELEAKK---------IENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAI----NMG-------S  213 (790)
Q Consensus       162 ~qL~~k~---------~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q--------~ee~~~~~----~e~-------e  213 (790)
                      .-|.--.         ..++.|...|..|+++....-+.+.++..-.-.        .++..+.+    .|+       .
T Consensus       210 ~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~  289 (660)
T KOG4302|consen  210 PSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSL  289 (660)
T ss_pred             hhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccH
Confidence            5554322         267888888888888887766666655543331        23332221    122       2


Q ss_pred             cchHhHHHHHHHH
Q 003863          214 SSSQNLEMEVVEL  226 (790)
Q Consensus       214 ~~~~~LE~Ev~EL  226 (790)
                      ..++.+|.||.-|
T Consensus       290 d~I~~ve~Ev~Rl  302 (660)
T KOG4302|consen  290 DIIEQVEKEVDRL  302 (660)
T ss_pred             HHHHHHHHHHHHH
Confidence            6677777887654

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.72  E-value=27  Score=38.77  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhccc----ccchHhHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMG----SSSSQNLEMEVVELRRLNKE  232 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~----e~~~~~LE~Ev~ELRr~Nke  232 (790)
                      +..|+.....-...+..++.-+-.|......|+.++.....+..   +...+|.+.    ...+.++..++..++....+
T Consensus       153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~---e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e  229 (312)
T smart00787      153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED---ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE  229 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555556665666666666666666655433333   333444322    37788888899999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhh
Q 003863          233 LQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       233 LQ~EkreL~~KLd~ae~~~  251 (790)
                      +|.+..++..+++....+.
T Consensus       230 ~~~~l~~l~~~I~~~~~~k  248 (312)
T smart00787      230 LEEELQELESKIEDLTNKK  248 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999888888776554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=83.68  E-value=99  Score=38.77  Aligned_cols=90  Identities=16%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---------------Hhhh-hhhhccc--------
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER---------------KNDN-KNAINMG--------  212 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q---------------~ee~-~~~~~e~--------  212 (790)
                      +.+|+-+|.....+|..|..+...||.|.+.||+-++.+..-.+|               +++. ++++ +|        
T Consensus        94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~-eIf~~~~~L~  172 (1265)
T KOG0976|consen   94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH-DIFMIGEDLH  172 (1265)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH-HHHHHHHHHh
Confidence            557777888888888888888888888888888887776655443               1111 2221 11        


Q ss_pred             --ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863          213 --SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (790)
Q Consensus       213 --e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a  247 (790)
                        -..+.+++.+..-+-..|.++--++.++..||+-+
T Consensus       173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~  209 (1265)
T KOG0976|consen  173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED  209 (1265)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              14566666666666555655555555555555533

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.68  E-value=7  Score=45.71  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      -.+|..+|+...-+++.....|..+.++..+|+   .+++....+-+++..|..++..++=.|-..+.=||+.=-.|+-+
T Consensus       336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~  412 (508)
T KOG3091|consen  336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPD  412 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence            459999999999999999999999999999998   33333333223333333334444444444444444444444444


Q ss_pred             Hhhhhhhhhhhhhh
Q 003863          237 KRNLACKFSSMENQ  250 (790)
Q Consensus       237 kreL~~KLd~ae~~  250 (790)
                      -.+|..|||.-.++
T Consensus       413 EE~Lr~Kldtll~~  426 (508)
T KOG3091|consen  413 EEELRAKLDTLLAQ  426 (508)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555544433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=83.67  E-value=16  Score=44.39  Aligned_cols=34  Identities=26%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       118 ~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      ..+++...|++.+...|..|.+.=.+=|.+|+..
T Consensus       339 ~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~  372 (961)
T KOG4673|consen  339 SDSDDVQLELDKTKKEIKMLNNALEAREAQLLAD  372 (961)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445557888888888888776655666666665

>PRK15313 autotransport protein MisL; Provisional

Probab=83.61  E-value=1.2  Score=55.12  Aligned_cols=9  Identities=22%  Similarity=0.157  Sum_probs=4.8

Q ss_pred             HhhccccCC
Q 003863          532 HSLMKRDSR  540 (790)
Q Consensus       532 rsL~~r~~~  540 (790)
                      .+|-.|.+.
T Consensus       655 ~tLhDR~GE  663 (955)
T PRK15313        655 TRLHDRLGE  663 (955)
T ss_pred             ccHHHhCCC
Confidence            456666443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=83.57  E-value=97  Score=38.70  Aligned_cols=40  Identities=15%  Similarity=0.185  Sum_probs=33.5

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~  253 (790)
                      ..+..-+.+|.-|++....|+...++-.++|+....++.+
T Consensus       385 d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~  424 (775)
T PF10174_consen  385 DMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS  424 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677778888889998888999999888888888887765

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=83.55  E-value=82  Score=37.92  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=39.6

Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhh----hhHHHHHHHHhhhHHHhhhHH
Q 003863          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKK----IENDEIVRRVGMLEDEKTSLS  189 (790)
Q Consensus       119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~----~Ei~~L~~kI~sLeaE~~rLq  189 (790)
                      .......+++.|...+..++.+-..++.++..+    .+.+. +.+|+..+....    .+.+.|+.++..++++..+.+
T Consensus       203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~  282 (650)
T TIGR03185       203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR  282 (650)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566666666666666666655555555    11122 444444333222    134456666666666666655


Q ss_pred             HHHHHH
Q 003863          190 EQLAAL  195 (790)
Q Consensus       190 ~qv~e~  195 (790)
                      .++.++
T Consensus       283 ~~l~~l  288 (650)
T TIGR03185       283 AQLREL  288 (650)
T ss_pred             HHHHHH
Confidence            555444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=83.40  E-value=40  Score=41.83  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      .++..||.|+..=|....++...-++|-.+|+...
T Consensus       680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  680 SKISSLEEELEKERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence            56666777766666666666655666666666554

The function of this family is unknown.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.22  E-value=37  Score=33.01  Aligned_cols=42  Identities=24%  Similarity=0.265  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI  198 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~  198 (790)
                      |..|+.+|.....|+..|+.++..|+.+...+.++++....-
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~   59 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE   59 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666677777777777777777777766655443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.06  E-value=75  Score=39.97  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          184 EKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       184 E~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      |.++|++++++....+.|-+.+.-.-.+.+...-..+....+|.....+|..+..+|..|++....|+
T Consensus       387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl  454 (980)
T KOG0980|consen  387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL  454 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34477777777777777655543333334444444455555555555566666666666666665555

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=83.03  E-value=1.1e+02  Score=36.35  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDE  184 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE  184 (790)
                      +..|+..+..+-.||..|+.++.+|...
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q  359 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQ  359 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5555555555555555555555444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=82.97  E-value=84  Score=35.03  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~  293 (790)
                      ..+.+|=.|+.+|+..-.++...--+|+...+..-.+           | .++-++++.+|..-+.+-.++..+......
T Consensus       158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~-----------m-~k~~~~~De~Rkeade~he~~ve~~~~~~e  225 (294)
T COG1340         158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEE-----------M-IKLFEEADELRKEADELHEEFVELSKKIDE  225 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4455555666666666666666555555554433211           2 245667777776666777666666655554


Q ss_pred             hHHHHH
Q 003863          294 EVEELA  299 (790)
Q Consensus       294 dvEELv  299 (790)
                      .-++|.
T Consensus       226 ~~ee~~  231 (294)
T COG1340         226 LHEEFR  231 (294)
T ss_pred             HHHHHH
Confidence            444444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.92  E-value=9.9  Score=37.84  Aligned_cols=63  Identities=30%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED  183 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLea  183 (790)
                      ..+..||..|+..+.+|+.....|+.+|..+.-..+..||..++..-..|+..|..++..|+.
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345778999999999999999999999988866666666766666666666666666666665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK15313 autotransport protein MisL; Provisional

Probab=82.89  E-value=1.2  Score=55.15  Aligned_cols=9  Identities=22%  Similarity=0.342  Sum_probs=5.0

Q ss_pred             hhHHhhhhh
Q 003863          750 YMLLQGVRF  758 (790)
Q Consensus       750 ~lL~qgvrF  758 (790)
                      .+.||+|++
T Consensus       829 QLiwq~V~~  837 (955)
T PRK15313        829 QVVWMGVQA  837 (955)
T ss_pred             EEEEEEccC
Confidence            355655555

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.81  E-value=50  Score=38.72  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE  285 (790)
                      .++..-=+|+.|+=+.+-.+-.|-++|-.++..-+.+..- .+      ..++.++|..+|.+|+.|..+|.
T Consensus       455 t~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l-~s------lEkl~~Dyqairqen~~L~~~iR  519 (521)
T KOG1937|consen  455 TRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL-KS------LEKLHQDYQAIRQENDQLFSEIR  519 (521)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH-hh------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566667888999999999999999999999876544321 11      35889999999999999998874

>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins

Probab=82.79  E-value=0.39  Score=54.09  Aligned_cols=10  Identities=0%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             hHHHHHHhhc
Q 003863          526 QVVEFYHSLM  535 (790)
Q Consensus       526 evvelYrsL~  535 (790)
                      .+.+||+---
T Consensus        50 ~LEdLF~~YG   59 (386)
T PF01698_consen   50 GLEDLFQGYG   59 (386)
T ss_dssp             ----------
T ss_pred             hHHHHHhhcc
Confidence            6777776543

Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.

>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]

Probab=82.72  E-value=2  Score=49.21  Aligned_cols=14  Identities=21%  Similarity=0.444  Sum_probs=7.6

Q ss_pred             hhhhhHhhhccchh
Q 003863          558 RSSMIGEIENRSSH  571 (790)
Q Consensus       558 r~~mi~Ei~nRS~~  571 (790)
                      ..+|-+|+.+|-.+
T Consensus       259 ~~~l~a~~~~~~~~  272 (409)
T KOG4590|consen  259 MASLMAEMAKRLAR  272 (409)
T ss_pred             hhhhhhhhhhccce
Confidence            33456666666544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.59  E-value=49  Score=33.04  Aligned_cols=112  Identities=21%  Similarity=0.124  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK  202 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~  202 (790)
                      ..++..-+..--+|+.+=..|+.+|... .+++.   +..+..-..++|.-|+.+|+.|-.+.++|..++..+..=+.  
T Consensus         9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~---~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~--   83 (140)
T PF10473_consen    9 EEKLKESESEKDSLEDHVESLERELEMSQENKEC---LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE--   83 (140)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3444555555556666666666666555 33333   22223334556777777777777777777766655442221  


Q ss_pred             hhhhhhh-cccccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863          203 NDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC  242 (790)
Q Consensus       203 ee~~~~~-~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~  242 (790)
                        .+... .....+|.+||.-...+++....++.++..+..
T Consensus        84 --~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e  122 (140)
T PF10473_consen   84 --NLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE  122 (140)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              00000 111245666666666666666666666444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.53  E-value=38  Score=35.76  Aligned_cols=20  Identities=30%  Similarity=0.212  Sum_probs=17.9

Q ss_pred             cchHhHHHHHHHHHHHHHHH
Q 003863          214 SSSQNLEMEVVELRRLNKEL  233 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeL  233 (790)
                      .++..||.|+.+||.....+
T Consensus        87 ekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   87 EKLGQLEAELAELREELACA  106 (202)
T ss_pred             hhhhhhHHHHHHHHHHHHhh
Confidence            77999999999999988887

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=82.26  E-value=48  Score=41.04  Aligned_cols=19  Identities=26%  Similarity=0.289  Sum_probs=9.5

Q ss_pred             HHHHHHHhhhchhHHHHHH
Q 003863          267 KAEALVLRHTNEDLSKQVE  285 (790)
Q Consensus       267 ~eE~~~Lr~~NE~L~~QlE  285 (790)
                      .+|+..||+-+-+|..-+.
T Consensus       535 DaEi~RL~eLtR~LQ~Sma  553 (861)
T PF15254_consen  535 DAEIERLRELTRTLQNSMA  553 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3555555555555544433

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=82.25  E-value=38  Score=36.93  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKR  238 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~Ekr  238 (790)
                      +-+.+|+.+|-.||+.+..|+.+-.
T Consensus       200 e~i~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  200 EEIDELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5678888888888888888887765

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.10  E-value=32  Score=34.50  Aligned_cols=30  Identities=33%  Similarity=0.277  Sum_probs=14.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863          216 SQNLEMEVVELRRLNKELQMEKRNLACKFS  245 (790)
Q Consensus       216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd  245 (790)
                      ++++..++.+++....+++.....+..++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  153 LQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555554444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=81.65  E-value=3.1  Score=43.76  Aligned_cols=66  Identities=29%  Similarity=0.326  Sum_probs=53.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHH-HHHHHHHHHhhhchhHHHHHHHH
Q 003863          217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS-KIKAEALVLRHTNEDLSKQVEGL  287 (790)
Q Consensus       217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va-~~~eE~~~Lr~~NE~L~~QlE~f  287 (790)
                      ..++.++.+|.-.+++|+....++..|+++++..-+..     -+++. ++++|+.-|+..|-.|..||+..
T Consensus       188 ~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-----r~ieEkk~~eei~fLk~tN~qLKaQLegI  254 (259)
T KOG4001|consen  188 TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-----REIEEKKMKEEIEFLKETNRQLKAQLEGI  254 (259)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45677888888889999999999999999999764332     22333 88999999999999999999854

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=81.19  E-value=30  Score=34.68  Aligned_cols=40  Identities=33%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      +.+++.++..-..|++.+...+..++.+...++++.....
T Consensus        83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4444555554455555555555555555555544444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=81.17  E-value=79  Score=33.50  Aligned_cols=177  Identities=20%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh----------H
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTS----------L  188 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r----------L  188 (790)
                      +.+|..|+..|..|++.--.-|..+...    +|.+- ..|-++.++.-.+....+.-++..++++.+.          =
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK   82 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK   82 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577777777777766555555444444    22222 3344444444333333333334333333222          2


Q ss_pred             HHHHHHHHHHHHHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHH
Q 003863          189 SEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIK  267 (790)
Q Consensus       189 q~qv~e~~~~~~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~  267 (790)
                      .+.|+..+.+++.. +.+..+-.-++..+..|+-+..-|...++-|.--.-.+..+++..+.+|..+             
T Consensus        83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~l-------------  149 (205)
T KOG1003|consen   83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKEL-------------  149 (205)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHH-------------
Confidence            23333333333321 2222222223466677777777776666666666666666666665544332             


Q ss_pred             HHHHHHhhh---chhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863          268 AEALVLRHT---NEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (790)
Q Consensus       268 eE~~~Lr~~---NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~  315 (790)
                        .++||+.   .+-..+.|..|+..+++.-+.|...+--+.|+..+|+..
T Consensus       150 --tdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  150 --TDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             --HHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence              2233311   123445666677666665555655444444444666654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.10  E-value=1.3e+02  Score=36.55  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863          211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (790)
Q Consensus       211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~  249 (790)
                      ||-+-+++=..|+.-.-.-.+.||-|...+.-||+-+-+
T Consensus       495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~  533 (594)
T PF05667_consen  495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFT  533 (594)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            333667777778888888889999999999999987754

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.93  E-value=7.6  Score=42.85  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      +..++.|+.|..+|.....+|+.+..+|...+...+...
T Consensus        49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen   49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888888888888888888888888877776554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.83  E-value=6.6  Score=41.14  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=23.7

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~  251 (790)
                      ++++...+..+.+|+..|.+|+.|...+..+++.++++.
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666677777777666666666665555443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=80.80  E-value=84  Score=33.57  Aligned_cols=66  Identities=9%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          130 LRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       130 LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      ++.-|.++.+.-..=+..|..| ++.+. +.++...+.--.++-..|..++..++....+++.+....
T Consensus        11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A   78 (225)
T COG1842          11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA   78 (225)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433334333334 66666 777777777777777788888888888888887766433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=80.54  E-value=12  Score=45.91  Aligned_cols=77  Identities=27%  Similarity=0.392  Sum_probs=56.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHH---hhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEA---KKIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~---k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      .+++.|..+||.-|++++.||.+|   |.+|-|.|. -.-||+|+..   ..+|.+-|+-.|..|++|..-|..|+.+..
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~  148 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA  148 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666677777766665   334444444 4567777663   446888899999999999999999999999


Q ss_pred             HHHH
Q 003863          197 VILE  200 (790)
Q Consensus       197 ~~~~  200 (790)
                      ++++
T Consensus       149 rLk~  152 (717)
T PF09730_consen  149 RLKE  152 (717)
T ss_pred             HHHH
Confidence            8887

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=80.35  E-value=95  Score=38.29  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=23.2

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~  200 (790)
                      +-+..++++..|..+...|.+++..+.....
T Consensus       490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~  520 (698)
T KOG0978|consen  490 ERIKANQKHKLLREEKSKLEEQILTLKASVD  520 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777788888888888888888876654444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=80.04  E-value=1.1e+02  Score=35.21  Aligned_cols=27  Identities=4%  Similarity=0.038  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          125 LELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      .=++-|...+..++.+=...|.+|..|
T Consensus       161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f  187 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAAENRLKAF  187 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777777777777

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	790
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 71/518 (13%), Positives = 143/518 (27%), Gaps = 157/518 (30%)

Query: 336 NVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQD------NVLDKTWVQ- 388
             G    Q   +L         F   F           N +C+D      ++L K  +  
Sbjct: 10  ETGEHQYQYKDILSV-------FEDAFVD---------NFDCKDVQDMPKSILSKEEIDH 53

Query: 389 -LEEGRSPRRRHSI------SGSNCRAEELMPNKRRQSDGFMCTK-ETEHEEESLSSQKY 440
            +    +      +             ++ +    R +  F+ +  +TE  + S+ ++ Y
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 441 DFDQRPQFSANRL----EMNRNASVLEVEKRVLRVPNPPPRPSCGIS----GGTKEERQA 492
              +   ++ N++     ++R    L++ + +L +     RP+  +      G       
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLG------- 160

Query: 493 QIPQPPPLPRPPPPPPAPKFSGKST-TGVVQRAPQVVE------FYHSLMKRDSRKD--- 542
                               SGK+     V  + +V        F+ +L   +S +    
Sbjct: 161 --------------------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 543 -------SSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI--REV 593
                    +       + ++     I  I+     LL  K        + N L+    V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYENCLLVLLNV 253

Query: 594 NNAVYQNIEDVVAF-------V----KWLDDELGFLVDERAVLKHFDWPEKKADTLREAA 642
            NA     +   AF       +    K + D L         L H        +    + 
Sbjct: 254 QNA-----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SL 306

Query: 643 FGYRDLKKLESEVSYYKDDPRVPCD---LALKKMV--SLSEKMERTVY-------ALLRT 690
                LK L+       D PR         L  ++  S+ + +             L   
Sbjct: 307 L----LKYLDCRPQ---DLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 691 RET--------LMRNC-REFQI-PTAWMLDDGIISKIKLSSVKLAKKY--MRRVAMELQS 738
            E+          R       + P         I  I LS +        +  V  +L  
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 739 KAGVEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHA 776
            + VEK P    + +  +    ++       +   +H 
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKL----ENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 100/675 (14%), Positives = 191/675 (28%), Gaps = 190/675 (28%)

Query: 81  IVASHSRVKRS-LIGDLACSMNPAQVH--------PN------SYQTHRRQSSGSRDLFL 125
           I+ S   V  +  +     S     V          N        +T +RQ S    +++
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
           E    R  L    +   K         R    L+L + L   ++   + V   G+L   K
Sbjct: 114 EQ---RDRLYNDNQVFAKYNV-----SRLQPYLKLRQAL--LELRPAKNVLIDGVLGSGK 163

Query: 186 TSLSEQLAALSVILERKNDNKNA-INMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244
           T ++     LS  ++ K D K   +N+ + +S    +E+         LQ     L    
Sbjct: 164 TWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---------LQ----KL---L 206

Query: 245 SSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWV 304
             ++   TS +  S +            ++     +  ++  L  S+        Y    
Sbjct: 207 YQIDPNWTSRSDHSSN------------IKLRIHSIQAELRRLLKSKP-------YEN-- 245

Query: 305 NSCLR--DELQNSCSTTNSEKASSPNTIEEIVE--NVGSLPNQNNKVLEYSGGRRLS-FI 359
             CL     +QN+                +     N+        K+L  +  ++++ F+
Sbjct: 246 --CLLVLLNVQNA----------------KAWNAFNLSC------KILLTTRFKQVTDFL 281

Query: 360 KKFKKWPIASEEMSNLECQDNVLD--KTWVQLEEGRSPRRRHSISGSNCR--AEEL--MP 413
                  I+ +  S     D V      ++       PR   + +       AE +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 414 NKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPN 473
                     C K T   E SL+  +   + R  F           SV      +     
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMF--------DRLSVFPPSAHI----- 387

Query: 474 PPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHS 533
            P      I     +     +                K    S   V ++  +      S
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVN--------------KLHKYSL--VEKQPKESTISIPS 430

Query: 534 LMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENR----SSHLLAIKADVATQGEFVNSL 589
           +   + +         +  N   +  S++          S  L+    D      F + +
Sbjct: 431 IY-LELK--------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHI 477

Query: 590 IREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKK--ADTLREAAFGY-- 645
              + N   ++ E +  F     D              F + E+K   D+    A G   
Sbjct: 478 GHHLKNI--EHPERMTLFRMVFLD--------------FRFLEQKIRHDSTAWNASGSIL 521

Query: 646 ---RDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCRE-- 700
              + LK  +  +    +DP+              E++   +   L   E  +   +   
Sbjct: 522 NTLQQLKFYKPYIC--DNDPKY-------------ERLVNAILDFLPKIEENLICSKYTD 566

Query: 701 -FQIPTAWMLDDGII 714
             +I  A M +D  I
Sbjct: 567 LLRI--ALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 52/369 (14%), Positives = 116/369 (31%), Gaps = 117/369 (31%)

Query: 40  RSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIG----- 94
           +++     F +  K           L LTT    VT+  ++   +H  +    +      
Sbjct: 254 QNAKAWNAFNLSCKI----------L-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 95  --------------DL---ACSMNPAQV---------HPNSYQTHRRQSSGSRDLFLELD 128
                         DL     + NP ++            ++   +  +       +E  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES- 361

Query: 129 SLRSLLQESKEREFKLQAELSEWKRN----PKVLELEREL--EAKKIENDEIVRRVGMLE 182
           SL  L      + F     LS +  +      +L L   +  +  K +   +V       
Sbjct: 362 SLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVV------- 408

Query: 183 DEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242
                   +L   S++ ++  ++  +I    S    L++++     L++ + ++  N+  
Sbjct: 409 -------NKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSI-VDHYNIPK 457

Query: 243 KFSSMENQLTSLAKASESD-IISKIKAEALVLRH-TNEDLSKQVEGLQMSRLNEVEELAY 300
            F S       L          S I        H  N +  +++   +M  L+       
Sbjct: 458 TFDS-----DDLIPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLD------- 499

Query: 301 LRWVNSCLRDELQNSCSTTNSEKASSPNTIEE-------IVENVGSLPNQNNKVLEYSGG 353
            R+    L  ++++  +  N+   S  NT+++       I +N            +Y   
Sbjct: 500 FRF----LEQKIRHDSTAWNA-SGSILNTLQQLKFYKPYICDNDP----------KYE-- 542

Query: 354 RRLSFIKKF 362
           R ++ I  F
Sbjct: 543 RLVNAILDF 551

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 33/217 (15%), Positives = 90/217 (41%), Gaps = 19/217 (8%)

Query: 104  QVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSE--WKRNP----KV 157
            Q H   +          + +       R ++ + + ++ K++A   E   K +     K+
Sbjct: 871  QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 158  LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQ 217
            ++L+R+++ +  E   ++ ++  LE   ++ +E+L +    L    +         +   
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT---NRVL 987

Query: 218  NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTN 277
            +L+ E+ +LR+   + Q EK+ +       +++   L        +S++K +  +L+   
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL--------VSELKEQNTLLKTEK 1039

Query: 278  EDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQN 314
            E+L++++          +E+   L      L  +L +
Sbjct: 1040 EELNRRIHDQAKEITETMEKK--LVEETKQLELDLND 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 126  ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
             +  L + L E +E+   L    ++ +    + ELE  L+ ++    E+ +    LE E 
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHES--MISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 186  TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245
            + L EQ+A L     +  + K  +       Q     + +          + R L    S
Sbjct: 1070 SDLHEQIAELQ---AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 246  SMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285
             ++  L S   A      +K + +   L    E L  ++E
Sbjct: 1127 DLQEDLESEKAA-----RNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 38/239 (15%), Positives = 85/239 (35%), Gaps = 12/239 (5%)

Query: 111  QTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIE 170
            Q H +       L  +L +   L  E++E   +L A+  E +    + E+E  +E ++  
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE--ILHEMEARIEEEEER 942

Query: 171  NDEIVRRVGMLEDEKTSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVEL 226
            + ++      ++ +   L EQL       ++    K      I         +E +  +L
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 227  RRLNKELQMEKRNLACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQV 284
             +  K L+    +L    +  E +  +L K       +IS+++        + ++L K  
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

Query: 285  EGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQ 343
              L+     E  +L            EL+   +    E  ++   +E+      +   +
Sbjct: 1063 RKLE----GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 14/43 (32%)

Query: 632 EKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMV 674
           EK+A            LKKL++ +  Y DD   P  LA+K  +
Sbjct: 18  EKQA------------LKKLQASLKLYADD-SAPA-LAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	790
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.24
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.13
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.03
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.93
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.36
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.13
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	95.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.99
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.68
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	92.05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.02
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.47
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	88.91
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	87.89
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.46
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.12
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	84.61
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.23
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	82.15
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.46
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	81.32
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	81.29
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	80.35

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.24  E-value=0.11  Score=52.11  Aligned_cols=70  Identities=23%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~  190 (790)
                      .....||...|.....++.+=..|+.+|.+|.+-..  =.||+.+|......+..|..++..|..|...+.+
T Consensus         6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~   77 (189)
T 2v71_A            6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE   77 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999932222  2355555555555555555555555555444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.13  E-value=0.064  Score=65.52  Aligned_cols=61  Identities=20%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ  288 (790)
Q Consensus       213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~  288 (790)
                      +..+..|+.|+.+|+.....+..|+.++..+++..+..               +++.++.|+.+|..|..|++.++
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~---------------L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---------------TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999998887777666532               23444445555555555555554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.12  E-value=0.19  Score=51.60  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=13.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      +..|..|+.-+.+.+..|+.+..++-.+++..+
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.03  E-value=0.014  Score=71.63  Aligned_cols=73  Identities=27%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      ...||..|+..+..++++-.+++.++.++    ...+. +.+++.+|.....++..+...+..|+.+...|++++.+.
T Consensus       855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~el  932 (1184)
T 1i84_S          855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM  932 (1184)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666655555555554444    11111 444444554444444445555555555555555555444

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.93  E-value=1.3  Score=42.57  Aligned_cols=28  Identities=7%  Similarity=0.029  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      ..+|+.|...+..|+.+-..|+.++.++
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~   39 (284)
T 1c1g_A           12 KLDKENALDRADEAEADKKAAEDRSKQL   39 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.36  E-value=0.96  Score=46.35  Aligned_cols=95  Identities=12%  Similarity=0.056  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-----Hhhhhhhhccc-ccchHhHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER-----KNDNKNAINMG-SSSSQNLEMEVVELRRLN  230 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-----~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~N  230 (790)
                      +..|+.++.....+++.+...|..++.+...+++.+..+..-...     +-+++..+.+. +..+..||.++.|+-...
T Consensus        41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444333322111     11122222222 366677777777777777


Q ss_pred             HHHHHHHhhhhhhhhhhhhhh
Q 003863          231 KELQMEKRNLACKFSSMENQL  251 (790)
Q Consensus       231 keLQ~EkreL~~KLd~ae~~~  251 (790)
                      ..++.+..++..+++..+..+
T Consensus       121 e~~~~~l~~~~~~l~~~~~~l  141 (256)
T 3na7_A          121 KRKSEKQEDLKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.13  E-value=0.04  Score=67.53  Aligned_cols=33  Identities=12%  Similarity=0.050  Sum_probs=19.7

Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW  151 (790)
Q Consensus       119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy  151 (790)
                      +...+..||..|+..+..++..-..|+.++..+
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777776666655555555544444

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=95.00  E-value=0.0041  Score=66.69  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=12.9

Q ss_pred             ccccchhHHHHhhc-CCcccc
Q 003863          351 SGGRRLSFIKKFKK-WPIASE  370 (790)
Q Consensus       351 s~sKk~~li~KLKk-W~~~ke  370 (790)
                      +.+|......++-+ |-.+.+
T Consensus       268 ~~s~~~e~A~~fl~~~l~s~e  288 (449)
T 3iot_A          268 AASPNKELAKEFLENYLLTDE  288 (449)
T ss_dssp             TTCSCHHHHHHHHHHTTSSHH
T ss_pred             CCCCCHHHHHHHHHHHhcCHH
Confidence            34566677777886 866544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.99  E-value=0.71  Score=62.17  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             cccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh---HHHHHHHHH-------HhhhhHHHHHHHH
Q 003863          114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK---VLELERELE-------AKKIENDEIVRRV  178 (790)
Q Consensus       114 ~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-----KEQE~---I~ELq~qL~-------~k~~Ei~~L~~kI  178 (790)
                      |++...+..+-.=|...+.+   |.++...++.+..+|     |=.|+   |.+|+.+|.       .++.+.+.+-.+|
T Consensus      1888 R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A         1888 RQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555554444444443   344444444444444     32333   555555554       4555555554455


Q ss_pred             hhhHHH
Q 003863          179 GMLEDE  184 (790)
Q Consensus       179 ~sLeaE  184 (790)
                      ..=+.+
T Consensus      1965 ~~~~~~ 1970 (3245)
T 3vkg_A         1965 VQDQQA 1970 (3245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            433333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.68  E-value=0.24  Score=60.60  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=11.6

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAAL  195 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~  195 (790)
                      |...++.+|.+|+.|...|++++...
T Consensus       978 e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A          978 EAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.05  E-value=6.3  Score=38.43  Aligned_cols=42  Identities=14%  Similarity=0.184  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863          260 SDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL  301 (790)
Q Consensus       260 s~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L  301 (790)
                      +.||+.++.+...+...|+.|..|+..-+.--...-++|..|
T Consensus       100 N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L  141 (154)
T 2ocy_A          100 NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL  141 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458998888888888888888888875554444444555444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.02  E-value=1.6  Score=43.03  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh----hhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN----KNAINMGSSSSQNLEMEVVELRRLNKELQ  234 (790)
Q Consensus       159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~----~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ  234 (790)
                      ||...+...-.-+..|.-++..|+.....|+.+++.+-....|+...    ...-.+++.++..|..|+..++-....++
T Consensus        38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333555566677777777777777777777666665433    22223456889999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhhhh
Q 003863          235 MEKRNLACKFSSMENQLT  252 (790)
Q Consensus       235 ~EkreL~~KLd~ae~~~~  252 (790)
                      .+++.|..|+..-|...+
T Consensus       118 ~e~r~L~Ekl~~lEKe~a  135 (168)
T 3o0z_A          118 GERKEAQDMLNHSEKEKN  135 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998887775443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.72  E-value=3.9  Score=41.07  Aligned_cols=149  Identities=19%  Similarity=0.230  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHH----hhhHHHHHHHHH
Q 003863          123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDE----KTSLSEQLAALS  196 (790)
Q Consensus       123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE----~~rLq~qv~e~~  196 (790)
                      +.++++.|+.-+.++|+--.-||.+|-.- ...+. +++|+.++..-..|++.++-+......+    ...|+.++..+.
T Consensus        22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~  101 (189)
T 2v71_A           22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR  101 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999988888888887655 55555 8888888888888888888888777777    555565555443


Q ss_pred             HHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc---ChhhHH--HHHHHHHH
Q 003863          197 VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA---SESDII--SKIKAEAL  271 (790)
Q Consensus       197 ~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~---~Es~~v--a~~~eE~~  271 (790)
                      ...                 ..|-..+.+|--.|.+|+-..|....-|+..+++++..-..   -|+++-  ..+++++.
T Consensus       102 ~~~-----------------~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~Q  164 (189)
T 2v71_A          102 AIK-----------------EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQ  164 (189)
T ss_dssp             HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHH-----------------HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222                 23444445555556666666666666666555554332110   112211  13344455


Q ss_pred             HHhhhchhHHHHHHHHh
Q 003863          272 VLRHTNEDLSKQVEGLQ  288 (790)
Q Consensus       272 ~Lr~~NE~L~~QlE~f~  288 (790)
                      .||.+.-+|...+.+.+
T Consensus       165 RLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          165 RLKDEARDLRQELAVRE  181 (189)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            56666666666665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.08  E-value=0.81  Score=50.92  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863          124 FLELDSLRSLLQESKEREFKLQAELSE  150 (790)
Q Consensus       124 ~~EI~~LR~~V~eLqeRE~kLE~eLlE  150 (790)
                      ..||..++..|+.|+++....+..+..
T Consensus       455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~  481 (597)
T 3oja_B          455 EAEVNELRAEVQQLTNEQIQQEQLLQG  481 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555554444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.47  E-value=2.5  Score=47.06  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=14.5

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALS  196 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~  196 (790)
                      ++..+...|..|+++....+..+....
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~  483 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLH  483 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666555555544443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=88.91  E-value=4.5  Score=37.72  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH----hhhhhhhcccccchHhHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK----NDNKNAINMGSSSSQNLEMEVVELRRLNKE  232 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~----ee~~~~~~e~e~~~~~LE~Ev~ELRr~Nke  232 (790)
                      +..|+..|.........|..+...|..+.+.|+.++..-.......    ....++..+++..+++|+..+.+....|..
T Consensus        22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~  101 (129)
T 2fxo_A           22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE  101 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555666666677777777777777765433222211    111222333344444444444444444444


Q ss_pred             HHHHHhh
Q 003863          233 LQMEKRN  239 (790)
Q Consensus       233 LQ~Ekre  239 (790)
                      |+.+++.
T Consensus       102 L~~~kkk  108 (129)
T 2fxo_A          102 LTAKKRK  108 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=87.89  E-value=16  Score=49.82  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~  293 (790)
                      ..|++||.++.+|+..-.++..|+..|....+.++.++            ..|..-+.+|-.+.++=..+++.|+.....
T Consensus      2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl------------~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A         2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV------------DRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence            45555555555555555554445544444444444333            123344444555555555555555444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.45  E-value=14  Score=34.40  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (790)
Q Consensus       157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E  236 (790)
                      ...|+.+|+.....+....-....|.+....|+.++.+.                 +.++.+.|....+|-..-+.|+.+
T Consensus        50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----------------~~rleeeee~~~~L~~~kkkle~e  112 (129)
T 2fxo_A           50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----------------NKRLEDEEEMNAELTAKKRKLEDE  112 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555554445555555555555555555443                 334444555555555555555555


Q ss_pred             Hhhhhhhhhhhh
Q 003863          237 KRNLACKFSSME  248 (790)
Q Consensus       237 kreL~~KLd~ae  248 (790)
                      ..+|...|+..+
T Consensus       113 ~~~Lk~~led~e  124 (129)
T 2fxo_A          113 CSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.46  E-value=4.1  Score=44.49  Aligned_cols=28  Identities=14%  Similarity=0.105  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863          221 MEVVELRRLNKELQMEKRNLACKFSSME  248 (790)
Q Consensus       221 ~Ev~ELRr~NkeLQ~EkreL~~KLd~ae  248 (790)
                      .++..|++.|.+|+.+..++..+++.|.
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (487)
T 3oja_A          442 HKETQLAEENARLKKLNGEADLALASAN  469 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence            3444445555555555555555555444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.12  E-value=20  Score=35.36  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc--ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (790)
Q Consensus       214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~--~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR  291 (790)
                      ..+..+|..+.||+-.+..|+-++..|-.-+..-++++..--  -.--+++++.+..-+..|..+-+.+...+.....++
T Consensus        41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~  120 (168)
T 3o0z_A           41 KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGER  120 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555444444444444444444443333322100  001133444444555555555555555555555555


Q ss_pred             hchHHHHHHH
Q 003863          292 LNEVEELAYL  301 (790)
Q Consensus       292 ~~dvEELv~L  301 (790)
                      ....|-|..|
T Consensus       121 r~L~Ekl~~l  130 (168)
T 3o0z_A          121 KEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555555

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=84.61  E-value=4.5  Score=35.59  Aligned_cols=71  Identities=18%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-----HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILER-----KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF  244 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-----~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL  244 (790)
                      ||..|..+|..+..++.+|.-++-........     +.|...|        ..+|.+++-||+-..++-+-+.+|-.|+
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R--------~~~E~d~~~LrkdvD~a~l~r~dLE~kv   72 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR--------EEAENTLQSFRQDVDNASLARLDLERKV   72 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45566677777777777776666554433331     2222222        5789999999999999999999998888


Q ss_pred             hhhh
Q 003863          245 SSME  248 (790)
Q Consensus       245 d~ae  248 (790)
                      ++-.
T Consensus        73 esL~   76 (86)
T 3swk_A           73 ESLQ   76 (86)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7554

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=82.15  E-value=2.8  Score=36.96  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhH--HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863          222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI--ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (790)
Q Consensus       222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~--va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv  299 (790)
                      |+.+||+....+..+|..|...++.++..+.-+-.--|.++  -..+..++..||..=+++.-.--.|+..=++..+||.
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA   80 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888887766655444445443  3355666676665444443333344444455566666


Q ss_pred             HHH
Q 003863          300 YLR  302 (790)
Q Consensus       300 ~LR  302 (790)
                      +||
T Consensus        81 fLk   83 (86)
T 3swk_A           81 FLK   83 (86)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            654

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.46  E-value=24  Score=31.53  Aligned_cols=88  Identities=22%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHh
Q 003863          125 LELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKN  203 (790)
Q Consensus       125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~e  203 (790)
                      .+++.|..-++.|+..|..|-.+|.+. ++.                 ..+...|..++++..+|..+-..|-       
T Consensus         4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~-----------------~~l~~el~~le~E~~~L~~eE~~~w-------   59 (96)
T 3q8t_A            4 SDSEQLQRELKELALEEERLIQELEDVEKNR-----------------KVVAENLEKVQAEAERLDQEEAQYQ-------   59 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHhhHHHHHH-------
Confidence            356777777777777777777777666 333                 2233334444444333333222221       


Q ss_pred             hhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863          204 DNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (790)
Q Consensus       204 e~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~  253 (790)
                                       .+-..+++..-++|.+..-|-++|+.|+.++..
T Consensus        60 -----------------~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk   92 (96)
T 3q8t_A           60 -----------------REYSEFKRQQLELDDELKSVENQMRYAQMQLDK   92 (96)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             123345566666677777777777777666543

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=81.32  E-value=4.4  Score=36.17  Aligned_cols=41  Identities=10%  Similarity=0.157  Sum_probs=29.3

Q ss_pred             HHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863          161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER  201 (790)
Q Consensus       161 q~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q  201 (790)
                      +.+++...++...|..++..|..+...|+.++.++..+.+.
T Consensus         5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e   45 (117)
T 2zqm_A            5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDE   45 (117)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566677777777777888888888888777777663

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=81.29  E-value=4  Score=37.25  Aligned_cols=52  Identities=29%  Similarity=0.364  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHh
Q 003863          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR  238 (790)
Q Consensus       170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekr  238 (790)
                      |-..|...++-|+.|+++|+.+-...                 -.++.+|+.||..||+.|..|-.|+.
T Consensus        38 EYl~LE~~~s~le~e~~rlr~~~~~~-----------------~~~v~eLe~everL~~ENq~L~~e~~   89 (104)
T 3s9g_A           38 EYLELEKSLSRMEDENNRLRLESKRL-----------------DARVRELELELDRLRAENLQLLTENE   89 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888999999998774333                 24678999999999999999988764

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=80.35  E-value=5.9  Score=34.94  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHH
Q 003863          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRV  178 (790)
Q Consensus       121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI  178 (790)
                      .++-+||..||..|.+|+....--|-.|.-.|  +.|..||.+|..+.+||.-|.-++
T Consensus        22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK--~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           22 EELLQELRHLKIKVEELENERNQYEWKLKATK--AEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            36788999999888887665544433333323  115666666666666655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00