Citrus Sinensis ID: 003868
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRI5 | 790 | Pentatricopeptide repeat- | yes | no | 0.986 | 0.986 | 0.64 | 0.0 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.932 | 0.937 | 0.416 | 1e-171 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.862 | 0.871 | 0.400 | 1e-163 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.915 | 0.973 | 0.356 | 1e-145 | |
| Q9M2Y7 | 721 | Pentatricopeptide repeat- | no | no | 0.872 | 0.955 | 0.369 | 1e-139 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.845 | 0.785 | 0.358 | 1e-138 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.892 | 0.927 | 0.346 | 1e-136 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.848 | 0.771 | 0.348 | 1e-136 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.902 | 0.866 | 0.358 | 1e-136 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.694 | 0.836 | 0.426 | 1e-134 |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/800 (64%), Positives = 642/800 (80%), Gaps = 21/800 (2%)
Query: 2 MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
M N D +R +ANRYA+ L+LC P + LAR+VH ++I+ GF+PR HI+NRLID+YC
Sbjct: 1 MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60
Query: 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F K P+ MRDTV YNAMI
Sbjct: 61 KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120
Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
T +SHN++G++AI LF M+ + KPDNFTF SVL+ LAL+ ++EKQC+Q H +KSG
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180
Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
G TSV NAL+SVY KC SSP SL+ +AR+VFDE+ E+DE SWTTMMTGYVKN Y
Sbjct: 181 GYITSVSNALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYF 235
Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
D E L+GM +N+ VA+NA+ISGYV+R +M+ I+LDEFTY SVI A
Sbjct: 236 DLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
CA +GL +LGKQVHAY+LR E +FS +N+LV+LY+KCGK +EAR IF +MP +D
Sbjct: 296 CATAGLLQLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 350
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EGF+PCDYAF+GAI SCA LGA NG+Q HAQL+ G+DSSLSAGNALITMYA+CGVVE
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 470
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
A VF TMP +DSVSWNA+IAALGQHG+GA A+++YE+MLK+GI PDRIT LTVL+AC+H
Sbjct: 471 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 530
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
AGLV +GR+YF++M Y IPPG DHYAR IDLLCR+GKFS+A+ VI+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 590
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNM+A G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKKE CSWIE++ +VH FLVDDT+HPEA+AVY YL+ L EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVE 710
Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
SD KE L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+S VV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIIL 770
Query: 771 RDGKRFHHFRDGKCSCGDYW 790
RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 322/774 (41%), Positives = 477/774 (61%), Gaps = 37/774 (4%)
Query: 34 ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
A+ VH +I SG +++N L+++Y K+ ++AR LFDE+P + T+++AYS
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 94 SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
++ E F++ P RD+V + MI Y + H AI + DM ++ ++P FT T
Sbjct: 93 RGDMDSTCEFFDQLP--QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 154 SVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
+VL+++A +CM+ +H +VK G SV N+L+++Y KC P +
Sbjct: 151 NVLASVA-----ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMM----- 199
Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
A+ VFD M RD SW M+ +++ +D A + M+E V WN++ISG+ R
Sbjct: 200 ---AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 270 --ELKML-----MLRIQL---DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
+L+ L MLR L D FT SV+SACAN +GKQ+H++++ T +
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF----DI 312
Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILSAYVSAGLIDEAKSLFEA 377
S V NAL+++Y +CG V AR + Q +DL + A+L Y+ G +++AK++F +
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVS 372
Query: 378 MRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437
+++R++++WT MI G Q+G E + LF M G +P Y A ++ + L +L +G
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG 432
Query: 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496
+Q+H V SG S+S NALITMYA+ G + +A+ F+ + D+VSW +MI AL Q
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQ 492
Query: 497 HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556
HG+ A+EL+E ML EG+ PD IT++ V SAC HAGLV +GR+YF+ M I P
Sbjct: 493 HGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLS 552
Query: 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616
HYA +DL RAG EA++ I+ +P +P W +LL+ CR+H NIDLG AAE+L L
Sbjct: 553 HYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL 612
Query: 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTA 676
P ++G Y L+N+Y+ G+W++AA++RK M+D VKKE G SWIEV +KVHVF V+D
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGT 672
Query: 677 HPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLP 736
HPE +Y ++++ E++K+GYVPDT VLHD+E + KE L HSEKLA+AFGL+ P
Sbjct: 673 HPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTP 732
Query: 737 GGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
T+R++KNLR+C DCH A KF+SK+VGREI+VRD RFHHF+DG CSC DYW
Sbjct: 733 DKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/739 (40%), Positives = 437/739 (59%), Gaps = 58/739 (7%)
Query: 54 NRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRD 113
N +I Y ++ + AR LFDE+P+ D+V+ +I Y + N+ ARE+F P RD
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERD 156
Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDM-RRDDVKPDNFTFTSVLSALALIVEEEKQCMQM 172
+N M++ Y+ N A +F M ++DV ++ ++LSA + E+ CM
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV-----SWNALLSAYVQNSKMEEACM-- 209
Query: 173 HCTVVKSGTGLFTSVLN-ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTM 231
LF S N AL+S C+ FV + ++ AR+ FD M RD +SW T+
Sbjct: 210 ----------LFKSRENWALVSW--NCLLGGFVKKKKIV-EARQFFDSMNVRDVVSWNTI 256
Query: 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA 291
+TGY ++ +D AR+ D W A++SGY+ + ++E
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM--------VEE--------- 299
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
R PE + NA++ Y + ++ A+++F+ MP R+
Sbjct: 300 -----------------ARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
+ +WN +++ Y G I EAK+LF+ M +R+ +SW MI+G +Q+G+ E L+LF QM
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EG + +F+ A+++CA + ALE G+QLH +LV GY++ GNAL+ MY +CG +E
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 462
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
AN +F M D VSWN MIA +HG G A+ +E M +EG+ PD T + VLSAC+H
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSH 522
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
GLV +GR+YF TM YG+ P HYA +DLL RAG +A +++ ++PF+P A IW
Sbjct: 523 TGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWG 582
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
LL R+HGN +L AA+++F + P ++G YVLLSN+YA+ GRW D ++R MRD+G
Sbjct: 583 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKK PG SWIE+ NK H F V D HPE ++ +LE+L L M+K GYV T VLHD+E
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVE 702
Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
++KE + HSE+LAVA+G+M++ G +RV+KNLR+C DCHNA K+M+++ GR I++R
Sbjct: 703 EEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILR 762
Query: 772 DGKRFHHFRDGKCSCGDYW 790
D RFHHF+DG CSCGDYW
Sbjct: 763 DNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 284/796 (35%), Positives = 438/796 (55%), Gaps = 73/796 (9%)
Query: 13 ANRYASQLQLC---DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
+N Y+ Q++ C RN S + +H ++I + P + N ++ Y YA
Sbjct: 3 SNYYSVQIKQCIGLGARN--QSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYA 60
Query: 70 RTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSN 129
R +FD IPQP++ + L+ AYS + + F K P RD V +N +I YS +
Sbjct: 61 RRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP--DRDGVTWNVLIEGYSLSGL 118
Query: 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM--QMHCTVVKSGTGLFTSV 187
AA++ + M RD N T ++++ L L + Q+H V+K G + V
Sbjct: 119 VGAAVKAYNTMMRD--FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLV 176
Query: 188 LNALISVY--VKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245
+ L+ +Y V C+S A++VF + +R+ + + ++M G + ++ A
Sbjct: 177 GSPLLYMYANVGCISD-----------AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDAL 225
Query: 246 EFLDGMSENVGVAWNALISGYVH-----------RELKMLMLRIQLDEFTYTSVISACAN 294
+ GM ++ V+W A+I G RE+K+ L+ +D++ + SV+ AC
Sbjct: 226 QLFRGMEKD-SVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK--MDQYPFGSVLPACGG 282
Query: 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVS 354
G GKQ+HA ++RT + + V +AL+ +Y KC
Sbjct: 283 LGAINEGKQIHACIIRTNFQD----HIYVGSALIDMYCKCK------------------- 319
Query: 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
+ AK++F+ M+++N++SWT M+ G Q G EE +K+F M+ G
Sbjct: 320 ------------CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI 367
Query: 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474
P Y AI++CA + +LE G Q H + + SG ++ N+L+T+Y +CG ++ +
Sbjct: 368 DPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427
Query: 475 VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534
+FN M D+VSW AM++A Q G I+L+++M++ G+ PD +T V+SAC+ AGL
Sbjct: 428 LFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGL 487
Query: 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL 594
V++G+RYF+ M YGI P HY+ IDL R+G+ EA I+ +PF P A W LL
Sbjct: 488 VEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547
Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654
+ CR GN+++G AAE L +L PHH Y LLS++YA+ G+WD A++R+ MR++ VKK
Sbjct: 548 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKK 607
Query: 655 EPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQ 714
EPG SWI+ K+H F DD + P +Y LE+L ++ GY PDT FV HD+E
Sbjct: 608 EPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAV 667
Query: 715 KEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGK 774
K L+ HSE+LA+AFGL+ +P G +RV KNLR+C DCHNA K +S V GREI+VRD
Sbjct: 668 KVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAV 727
Query: 775 RFHHFRDGKCSCGDYW 790
RFH F+DG CSCGD+W
Sbjct: 728 RFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/763 (36%), Positives = 422/763 (55%), Gaps = 74/763 (9%)
Query: 34 ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
+S+HA + S ++ N +++Y K +L YAR F +P++ + ++ AY+
Sbjct: 27 GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86
Query: 94 SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
+ +AR++F++ P DTV YN +I+ Y+ AA+ LF+ MR+ + D FT +
Sbjct: 87 DSKIHIARQLFDEIP--QPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLS 144
Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
+++A V+ KQ +HC V G ++SV NA ++ Y S L+ A
Sbjct: 145 GLIAACCDRVDLIKQ---LHCFSVSGGFDSYSSVNNAFVTYY---------SKGGLLREA 192
Query: 214 RRVFDEMPE-RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELK 272
VF M E RDE+SW +M+ Y + + A+ +++E
Sbjct: 193 VSVFYGMDELRDEVSWNSMIVAY--GQHKEGAKALA------------------LYKE-- 230
Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
M+ ++D FT SV++A + G+Q H L++ V + L+ Y
Sbjct: 231 MIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSH----VGSGLIDFYS 286
Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
KCG + G+ D K +F+ + +L+ W MISG
Sbjct: 287 KCGGCD---------------------------GMYDSEK-VFQEILSPDLVVWNTMISG 318
Query: 393 LAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS 451
+ N EE +K F QM+ G +P D +F ++C+ L + +Q+H + S S
Sbjct: 319 YSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPS 378
Query: 452 S-LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510
+ +S NALI++Y + G ++ A VF+ MP +++VS+N MI QHG+G A+ LY++M
Sbjct: 379 NRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRM 438
Query: 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570
L GI P++ITF+ VLSAC H G V EG+ YF TM + I P +HY+ IDLL RAGK
Sbjct: 439 LDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498
Query: 571 FSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630
EA+ ID++P+KP + W ALL CR H N+ L +AA +L + P A YV+L+NM
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANM 558
Query: 631 YANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQL 690
YA+ +W++ A VRK MR + ++K+PGCSWIEV K HVF+ +D +HP + V +YLE++
Sbjct: 559 YADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEM 618
Query: 691 VLEMRKLGYVPDTKFVL---HDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL 747
+ +M+K+GYV D K+ + + +E L HSEKLAVAFGLM G + V+KNL
Sbjct: 619 MKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNL 678
Query: 748 RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
RICGDCHNA KFMS V GREI+VRD RFH F+DGKCSCGDYW
Sbjct: 679 RICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1265), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/733 (35%), Positives = 406/733 (55%), Gaps = 65/733 (8%)
Query: 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
++ L+A YS ++ AR++F++ + + D V +N++I +Y+ A+E+F
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDE--MSVWDVVSWNSIIESYAKLGKPKVALEMFSR 218
Query: 140 MRRD-DVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKC 198
M + +PDN T +VL A + Q+HC V S V N L+ +Y KC
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGTHSLG-KQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277
Query: 199 VSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVK-NDYLDAAREFLDGMSENVG- 256
+M A VF M +D +SW M+ GY + + DA R F E +
Sbjct: 278 ---------GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKM 328
Query: 257 --VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305
V W+A ISGY R L +ML I+ +E T SV+S CA+ G GK++H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388
Query: 306 AYLLRTEAKPTPEFSLPVN---NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
Y ++ N N L+ +Y KC KV
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV------------------------- 423
Query: 363 VSAGLIDEAKSLFEAM--RERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF--KPCD 418
D A+++F+++ +ER++++WTVMI G +Q+G + L+L S+M E +P
Sbjct: 424 ------DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477
Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFN 477
+ + A+ +CA L AL G+Q+HA + + ++ L N LI MYA+CG + A VF+
Sbjct: 478 FTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFD 537
Query: 478 TMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKE 537
M + V+W +++ G HG G A+ ++++M + G D +T L VL AC+H+G++ +
Sbjct: 538 NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQ 597
Query: 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597
G YF M +G+ PG +HYA +DLL RAG+ + A +I+ +P +P +W A L+ C
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657
Query: 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657
RIHG ++LG AAE++ +L +H G+Y LLSN+YAN GRW D R+R LMR +GVKK PG
Sbjct: 658 RIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPG 717
Query: 658 CSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEY 717
CSW+E F V D HP A+ +Y+ L + ++ +GYVP+T F LHD++ ++K+
Sbjct: 718 CSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDD 777
Query: 718 ALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFH 777
L HSEKLA+A+G++ P GA +R+ KNLR+CGDCH AF +MS+++ +I++RD RFH
Sbjct: 778 LLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFH 837
Query: 778 HFRDGKCSCGDYW 790
HF++G CSC YW
Sbjct: 838 HFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/771 (34%), Positives = 414/771 (53%), Gaps = 66/771 (8%)
Query: 38 HAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNV 97
HA ++ SG + +I +LI Y A + IP P I + ++LI A + +
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 98 KLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLS 157
+ +F++ +F + +I SH V P+ F + LS
Sbjct: 98 TQSIGVFSR--------MFSHGLIPD-SH------------------VLPNLFKVCAELS 130
Query: 158 ALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVF 217
A K Q+HC SG + V ++ +Y++C MG AR+VF
Sbjct: 131 AF-------KVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC---------GRMGDARKVF 174
Query: 218 DEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GMSENVGVAWNALISGY----VH 268
D M ++D ++ + ++ Y + L+ L G+ N+ V+WN ++SG+ H
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI-VSWNGILSGFNRSGYH 233
Query: 269 RELKMLMLRIQ-----LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
+E ++ +I D+ T +SV+ + +S + +G+ +H Y+++ V
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDK----CV 289
Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-- 381
+A++ +Y K G V +FNQ + NA ++ GL+D+A +FE +E+
Sbjct: 290 ISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTM 349
Query: 382 --NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
N++SWT +I+G AQNG E L+LF +M++ G KP + +C + AL +GR
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS 409
Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
H V ++ G+ALI MYA+CG + + VFN MP + V WN+++ HG
Sbjct: 410 THGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
+ ++E +++ + PD I+F ++LSAC GL EG +YF+ M YGI P +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
++LL RAGK EA D+I +PF+P + +W ALL CR+ N+DL AAE+LF L P
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
+ GTYVLLSN+YA G W + +R M G+KK PGCSWI+V N+V+ L D +HP+
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
+ + ++++ EMRK G+ P+ F LHD+E ++E L HSEKLAV FGL+ P G
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709
Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
++V+KNLRICGDCH KF+S GREI +RD RFHHF+DG CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/783 (34%), Positives = 414/783 (52%), Gaps = 113/783 (14%)
Query: 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
D+ T+L+ Y N K R++F++ +K R+ V + +I+ Y+ NS + LF
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDE--MKERNVVTWTTLISGYARNSMNDEVLTLFMR 184
Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEK---QCMQMHCTVVKSGTGLFTSVLNALISVYV 196
M+ + +P++FTF + L LA EE + +Q+H VVK+G V N+LI++Y+
Sbjct: 185 MQNEGTQPNSFTFAAALGVLA----EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240
Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256
KC + + AR +FD+ + ++W +M++GY N G
Sbjct: 241 KCGN---------VRKARILFDKTEVKSVVTWNSMISGYAAN-----------------G 274
Query: 257 VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316
+ AL Y M + ++L E ++ SVI CAN R +Q+H ++ K
Sbjct: 275 LDLEALGMFY-----SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVV----KYG 325
Query: 317 PEFSLPVNNALVTLYWKC----------------GKV----------------NEARDIF 344
F + AL+ Y KC G V EA D+F
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385
Query: 345 NQMP-----------------------------------ERDLVSWNAILSAYVSAGLID 369
++M ER A+L AYV G ++
Sbjct: 386 SEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVE 445
Query: 370 EAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
EA +F + ++++++W+ M++G AQ G E +K+F ++ G KP ++ F+ + CA
Sbjct: 446 EAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCA 505
Query: 430 GLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
A + G+Q H + S DSSL +AL+TMYA+ G +E+A VF D VSWN
Sbjct: 506 ATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWN 565
Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
+MI+ QHG +A++++++M K + D +TF+ V +AC HAGLV+EG +YF+ M
Sbjct: 566 SMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD 625
Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
I P ++H + +DL RAG+ +A VI+++P + IW +LA CR+H +LG
Sbjct: 626 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRL 685
Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
AAE++ + P + YVLLSNMYA G W + A+VRKLM +R VKKEPG SWIEV NK +
Sbjct: 686 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745
Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
FL D +HP +Y LE L ++ LGY PDT +VL D++ + KE L+ HSE+LA+
Sbjct: 746 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 805
Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHF-RDGKCSCG 787
AFGL+ P G+ + ++KNLR+CGDCH K ++K+ REIVVRD RFHHF DG CSCG
Sbjct: 806 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 865
Query: 788 DYW 790
D+W
Sbjct: 866 DFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/779 (35%), Positives = 417/779 (53%), Gaps = 66/779 (8%)
Query: 60 YCKSL---KLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF 116
YC +L K ++AR + + Q ++ L+ Y NV LAR F+ ++ RD
Sbjct: 63 YCTNLQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDH--IQNRDVYA 119
Query: 117 YNAMITAYSHNSNGHAAIELFR-DMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCT 175
+N MI+ Y N I F M + PD TF SVL A +++ K +HC
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK----IHCL 175
Query: 176 VVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGY 235
+K G V +LI +Y S +G AR +FDEMP RD SW M++GY
Sbjct: 176 ALKFGFMWDVYVAASLIHLY---------SRYKAVGNARILFDEMPVRDMGSWNAMISGY 226
Query: 236 VKNDYLDAAREFLDGMSENVGVAWNALIS-----GYVHRELKMLMLRI----QLDEFTYT 286
++ A +G+ V +L+S G +R + + I + + F
Sbjct: 227 CQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286
Query: 287 SVISACANSGLFRLGKQV----------------HAYLLRTEAKPTPEFSLPVNNALVTL 330
+I A G R ++V AY L + P SL L +
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ--PLRAISLFQEMRLSRI 344
Query: 331 YWKCGKVNEARDIFNQMPE------------------RDLVSWNAILSAYVSAGLIDEAK 372
C + I +Q+ + D+ NA++ Y GL+D A+
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404
Query: 373 SLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA-FAGAITSCAGL 431
++F + +++SW +ISG AQNG+ E +++++ M EG + + + +C+
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464
Query: 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491
GAL G +LH +L+ +G + +L MY +CG +E A +F +P V+SV WN +I
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524
Query: 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551
A G HG+G +A+ L+++ML EG+ PD ITF+T+LSAC+H+GLV EG+ FE M YGI
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584
Query: 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611
P HY +D+ RAG+ A I S+ +P A IW ALL+ CR+HGN+DLG A+E
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644
Query: 612 QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFL 671
LF++ P H G +VLLSNMYA+ G+W+ +R + +G++K PG S +EVDNKV VF
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704
Query: 672 VDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFG 731
+ HP + +Y+ L L +++ +GYVPD +FVL D+E D+KE+ L +HSE+LA+AF
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764
Query: 732 LMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
L+ P T+R+ KNLR+CGDCH+ KF+SK+ REI+VRD RFHHF++G CSCGDYW
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/584 (42%), Positives = 349/584 (59%), Gaps = 35/584 (5%)
Query: 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267
S M A ++FDE+PE D S+ M++ YV+N + A+ F D M +WN +I+GY
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166
Query: 268 HRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327
R G+ A L E S NA+
Sbjct: 167 RR-------------------------------GEMEKARELFYSMMEKNEVSW---NAM 192
Query: 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-ERNLLSW 386
++ Y +CG + +A F P R +V+W A+++ Y+ A ++ A+++F+ M +NL++W
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252
Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
MISG +N E+GLKLF M EG +P + A+ C+ L AL+ GRQ+H +
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312
Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
S + ++A +LI+MY +CG + A +F M D V+WNAMI+ QHGN +A+ L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372
Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
+ +M+ I PD ITF+ VL ACNHAGLV G YFE+M Y + P DHY +DLL
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 432
Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
RAGK EA +I S+PF+P A ++ LL CR+H N++L AAE+L QL +A YV
Sbjct: 433 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 492
Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
L+N+YA+ RW+D ARVRK M++ V K PG SWIE+ NKVH F D HPE +++K
Sbjct: 493 LANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKK 552
Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKN 746
L++L +M+ GY P+ +F LH++E +QKE L HSEKLAVAFG +KLP G+ ++V KN
Sbjct: 553 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKN 612
Query: 747 LRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
LRICGDCH A KF+S++ REI+VRD RFHHF+DG CSCGDYW
Sbjct: 613 LRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | ||||||
| 225458036 | 799 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.988 | 0.755 | 0.0 | |
| 224066034 | 797 | predicted protein [Populus trichocarpa] | 0.997 | 0.988 | 0.736 | 0.0 | |
| 449470104 | 797 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.988 | 0.707 | 0.0 | |
| 449520177 | 797 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.987 | 0.691 | 0.0 | |
| 449470118 | 797 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.987 | 0.687 | 0.0 | |
| 356533814 | 782 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.985 | 0.677 | 0.0 | |
| 357440933 | 795 | Pentatricopeptide repeat-containing prot | 0.984 | 0.978 | 0.659 | 0.0 | |
| 297851096 | 790 | pentatricopeptide repeat-containing prot | 0.986 | 0.986 | 0.643 | 0.0 | |
| 15222566 | 790 | pentatricopeptide repeat-containing prot | 0.986 | 0.986 | 0.64 | 0.0 | |
| 242050732 | 802 | hypothetical protein SORBIDRAFT_02g03796 | 0.964 | 0.950 | 0.545 | 0.0 |
| >gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1259 bits (3257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/799 (75%), Positives = 692/799 (86%), Gaps = 9/799 (1%)
Query: 1 MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
M M+NA +R LAN+YA+QLQ C P NP++ S+AR+VHAHMI+SGFKPR +I+NRLID+Y
Sbjct: 1 MDMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVY 60
Query: 61 CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAM 120
CKS LV A LFDEI QPDIVARTTLIAA+S++ N LARE+F TPL +RDTV YNAM
Sbjct: 61 CKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAM 120
Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSG 180
IT YSHN++G AIELFRD+ R+ +PDNFTFTSVL ALALIVE+EKQC Q+HC VVKSG
Sbjct: 121 ITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG 180
Query: 181 TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDY 240
+G TSVLNAL+SV+VKC SSP VSS SLM AAR++FDEM ERDELSWTTM+ GYV+N
Sbjct: 181 SGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGE 240
Query: 241 LDAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
LDAAR+FLDGM+E + VAWNA+ISGYVH KM +L IQ DEFTYTSV+SA
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
CAN+G F GKQVHAY+LRTE +P+ +FSL VNNAL TLYWKCGKV+EAR +FNQMP +D
Sbjct: 301 CANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKD 360
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
LVSWNAILS YV+AG IDEAKS FE M ERNLL+WTVMISGLAQNG+GEE LKLF++M+
Sbjct: 361 LVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EGF+PCDYAFAGAI +CA L AL +GRQLHAQLV G+DSSLSAGNALITMYA+CGVVEA
Sbjct: 421 EGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEA 480
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
A+C+F TMP +DSVSWNAMIAALGQHG+GA+A+EL+E MLKE ILPDRITFLTVLS C+H
Sbjct: 481 AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 540
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
AGLV+EG RYF++M G YGI PGEDHYAR IDLLCRAGKFSEAKD+I+++P +P PIWE
Sbjct: 541 AGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWE 600
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
ALLAGCRIHGN+DLGIQAAE+LF+LMP H GTYVLLSNMYA +GRWDD A+VRKLMRD+G
Sbjct: 601 ALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKG 660
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKKEPGCSWIEV+NKVHVFLVDD HPE QAVY YLE+L L+MRKLGY+PDTKFVLHDME
Sbjct: 661 VKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDME 720
Query: 712 SDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVR 771
S+QKEY LSTHSEKLAV FGL+KLP GATVRV KNLRICGDCHNAFKFMSKVV REIVVR
Sbjct: 721 SEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVR 780
Query: 772 DGKRFHHFRDGKCSCGDYW 790
DGKRFHHF++G+CSCG+YW
Sbjct: 781 DGKRFHHFKNGECSCGNYW 799
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/797 (73%), Positives = 687/797 (86%), Gaps = 9/797 (1%)
Query: 3 MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
M D IRT ANRY S LQ+C ++PI+ SLAR VHAHMI+SGF+PR HI+NRLIDIY K
Sbjct: 1 MTTPDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSK 60
Query: 63 SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
S KL YAR LFDEIPQPDIVARTTLIAAYSA+ ++KL+R++F+ TPL MRD+VFYNAMIT
Sbjct: 61 SSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMIT 120
Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
AYSHN +GHAAIELF DM+RD+ +PDN+TFTSVL ALAL+ E+EK C Q+HC VVKSGTG
Sbjct: 121 AYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTG 180
Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
TSVLNALIS YVKC +SP S SLM AR++FDEMP RDELSWTT++TGYVKN+ LD
Sbjct: 181 FVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLD 240
Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
AA+EFL+G S+ +GVAWNA+ISGY HR L KM+M +IQLDEFT+TSVIS CA
Sbjct: 241 AAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCA 300
Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
N+G FRLGK++HAY L+T A P P+ ++PVNNAL+T YWKCGKV+ A++IFN+MPERDLV
Sbjct: 301 NAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLV 360
Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
SWN ILS YV+ +DEAKS F M E+N+LSW +MISGLAQ G+ EE LK F++M+L+G
Sbjct: 361 SWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420
Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
F+PCDYAFAGAI SC+ LG+L++GRQLHAQ+V GY+SSLSAGNALITMYARCGVV+AA+
Sbjct: 421 FEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAH 480
Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
C+F MP VD++SWNAMIAALGQHG G +AIEL+E+MLKEGILPDRI+FLTV+SAC+HAG
Sbjct: 481 CLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAG 540
Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
LVKEGR+YF++MH YG+ P E+HYAR IDLLCRAGKFSEAK+V++S+PF+P APIWEAL
Sbjct: 541 LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL 600
Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
LAGCRIHGNIDLGI+AAE+LF+L P H GTYVLLSNMYA G+W+D A+VRKLMRDRGVK
Sbjct: 601 LAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVK 660
Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
KEPGCSWIEV+NKVH FLV D HPE + +Y YLEQLVLEMRK+GYVPDTK VLHD+ESD
Sbjct: 661 KEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESD 720
Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
KE+ LSTHSEKLAVA+G MKLP GATVRV KNLRICGDCHNAFKFMSKVVGREIVVRDG
Sbjct: 721 LKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDG 780
Query: 774 KRFHHFRDGKCSCGDYW 790
KRFHHFRDGKCSCGDYW
Sbjct: 781 KRFHHFRDGKCSCGDYW 797
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis sativus] gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/797 (70%), Positives = 667/797 (83%), Gaps = 9/797 (1%)
Query: 3 MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
M+N +R LANRY +QL LC P+N + SLAR+VH H+I+SGFK R HI+NRLIDIY K
Sbjct: 1 MRNVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWK 60
Query: 63 SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
S VYAR LFDEIPQPD++ARTTLI AYSA N+K+ARE+FN+TPL MRDTVFYNAMIT
Sbjct: 61 SSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMIT 120
Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
YSH ++GH+AIELFR MR + +PD+FTF SVLSA LI +E+QC QMH TVVK G
Sbjct: 121 GYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIE 180
Query: 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242
+F +VLNAL+SVYVKC SSP VSS SLM +AR++FDEMP+R+E WTT++TGYV+N L
Sbjct: 181 IFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLT 240
Query: 243 AAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACA 293
ARE LD M+E G+AWNA+ISGY+H L KM +L +Q+DE TYTSVISACA
Sbjct: 241 GAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACA 300
Query: 294 NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
+ G F LGKQVHAY+L+ E P +F L V N L+TLYWK GKV+ AR IF +MP +D++
Sbjct: 301 DGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDII 360
Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
+WN +LS YV+AG ++EAKS F M E+NLL+WTVMISGLAQNG+GE+ LKLF+QM+L+G
Sbjct: 361 TWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG 420
Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
++P DYAFAGAIT+C+ LGALENGRQLHAQ+VH G+DS+LS GNA+ITMYARCG+VEAA
Sbjct: 421 YEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAAR 480
Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
+F TMP VD VSWN+MIAALGQHG+G +AIELYEQMLKEGILPDR TFLTVLSAC+HAG
Sbjct: 481 TMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAG 540
Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
LV+EG RYF +M YGI PGEDHYAR IDL CRAGKFS+AK+VIDS+PF+ APIWEAL
Sbjct: 541 LVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEAL 600
Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
LAGCR HGN+DLGI+AAE+LF+L+P H GTYVLLSNMYA+LGRW+D AR RKLMRDRGVK
Sbjct: 601 LAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVK 660
Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
KEP CSW EV+NKVHVFLVDDT HPE ++Y YLE+L LEM+K+GY+PDTK+VLHDMES+
Sbjct: 661 KEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESE 720
Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
KEYALSTHSEKLAVAFGLMKLP GATVRV KNLRICGDCHNA KFMSKVVGREIVVRDG
Sbjct: 721 HKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDG 780
Query: 774 KRFHHFRDGKCSCGDYW 790
KRFHHF++G+CSC +YW
Sbjct: 781 KRFHHFKNGECSCRNYW 797
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/798 (69%), Positives = 664/798 (83%), Gaps = 11/798 (1%)
Query: 3 MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
M+NA IR LANRYA +LQLC P++P + SLAR+VHAHMI+SGFKPR H +NRL+++YCK
Sbjct: 1 MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60
Query: 63 SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
S LVYAR LF+EIP PD +ARTTLI AY A N++L RE+FN TPL MRD+VFYNAMIT
Sbjct: 61 SSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120
Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
Y+HN +GH+A+ELFR MRRDD +PD+FTFTSVLSAL L V E+QC QMHC VVK+G G
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180
Query: 183 -LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
+ +SVLNAL+SVYVK S +S S M +AR++FDEMP+RDEL+WTTM+TGYV+ND L
Sbjct: 181 CVSSSVLNALLSVYVKRASELGISC-SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239
Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
+ ARE + M EN+G AWNA+ISGYVH KM L IQ D+ TYT++ISAC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299
Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
AN G F++GKQVHAY+L+ E P F L V+NAL+TLY K KV+EAR IF MP R++
Sbjct: 300 ANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359
Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
++WNAILS YV+AG ++EAKS FE M +NLL+ TVMISGLAQNG+G+EGLKLF QMRL+
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419
Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
GF+PCD+AFAGA+T+C+ LGALENGRQLHAQLVH GY+SSLS GNA+I+MYA+CGVVEAA
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479
Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
VF TMP+VD VSWN+MIAALGQHG+G +AIEL++QMLKEG+ PDRITFLTVL+AC+HA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539
Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
GLV++GR YF +M YGI P EDHYAR +DL CRAG FS A+ VIDS+P KP AP+WEA
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599
Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
LLAGCRIHGN+DLGI+AAEQLF+LMP + GTYVLLSN+YA++GRW++ A+VRKLMRD+ V
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAV 659
Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
+KEP CSWIEV+NKVHVF+VDD HPE +VY+YLEQL LEM+KLGY+PDTKFVLHDME
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719
Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
+QKE+ALSTHSEKLAV FG+MKLP GATVRV KN+RICGDCHNAFKFMSKV REI+VRD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779
Query: 773 GKRFHHFRDGKCSCGDYW 790
KRFHHF++G CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/798 (68%), Positives = 662/798 (82%), Gaps = 11/798 (1%)
Query: 3 MKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCK 62
M+NA IR LANRYA +LQLC P++P + SLAR+VHAHMI+SGFKPR H +NRL+++YCK
Sbjct: 1 MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60
Query: 63 SLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMIT 122
S +VYAR LF+EIP PD +ARTTLI AY A N++L RE+FN TPL MRD+VFYNAMIT
Sbjct: 61 SSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120
Query: 123 AYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTG 182
Y+HN +GH+A+ELFR MRRDD +PD+FTFTSVLSAL L V E+QC QMHC VVK+G G
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180
Query: 183 -LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
+ +SVLNAL+SVYVK S + S M +AR++FDEMP+RDEL+WTTM+TGYV+ND L
Sbjct: 181 CVSSSVLNALLSVYVKRASELGIPC-SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239
Query: 242 DAAREFLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISAC 292
+ ARE + M EN+G AWNA+ISGYVH KM L IQ D+ TYT++ISAC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299
Query: 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDL 352
AN G F++GKQ+HAY+L+ E P F L V+NAL+TLY K KV+EAR IF MP R++
Sbjct: 300 ANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359
Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412
++WNAILS YV+AG ++EAKS FE M +NLL+ TVMISGLAQNG+G+EGLKLF QMRL+
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419
Query: 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472
GF+PCD+AFAGA+T+C+ LGALENGRQLHAQLVH GY+SSLS GNA+I+MYA+CGVVEAA
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479
Query: 473 NCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532
VF TMP+VD VSWN+MIAALGQHG+G +AIEL++QMLKEG+ PDRITFLTVL+AC+HA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539
Query: 533 GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592
GLV++GR YF +M YGI P EDHYAR +DL CRAG FS A+ VIDS+P KP AP+WEA
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599
Query: 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652
LLAGCRIHGN+DLGI+AAEQLF+LMP + GTYVLLSN+YA++GRW+D A+VRKLMRD+ V
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAV 659
Query: 653 KKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMES 712
+KEP CSWIEV+NKVHVF+VDD HPE +VY+YLEQL LEM+KLGY+PDTKFVLHDME
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719
Query: 713 DQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRD 772
+QKE+ALSTHSEKLAV FG+MKLP ATVRV KN+RICGDCHNAFKFMSKV REI+VRD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779
Query: 773 GKRFHHFRDGKCSCGDYW 790
KRFHHF++G CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/790 (67%), Positives = 648/790 (82%), Gaps = 19/790 (2%)
Query: 12 LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYART 71
+ NRY +QL +S AR+VHAH+++SGFKP IINRLID YCKS + YAR
Sbjct: 1 MGNRYLAQLS--------HTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARY 52
Query: 72 LFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGH 131
LFD+IP+PDIVA TT+++AYSA+ N+KLA ++FN TP+ +RDTV YNAMITA+SH+ +GH
Sbjct: 53 LFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGH 112
Query: 132 AAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL 191
AA++LF M+R PD FTF+SVL AL+LI +EE C Q+HC V K G SVLNAL
Sbjct: 113 AALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNAL 172
Query: 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLD 249
+S YV C SSP V+S LM AAR++FDE P RDE +WTT++ GYV+ND L AARE L+
Sbjct: 173 MSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLE 232
Query: 250 GMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRL 300
GM++++ VAWNA+ISGYVHR +M L IQLDE+TYTSVISA +N+GLF +
Sbjct: 233 GMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292
Query: 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILS 360
G+QVHAY+LRT +P+ F L VNNAL+TLY +CGK+ EAR +F++MP +DLVSWNAILS
Sbjct: 293 GRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILS 352
Query: 361 AYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420
V+A I+EA S+F M R+LL+WTVMISGLAQNG+GEEGLKLF+QM+LEG +PCDYA
Sbjct: 353 GCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYA 412
Query: 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480
+AGAI SC+ LG+L+NG+QLH+Q++ G+DSSLS GNALITMY+RCG+VEAA+ VF TMP
Sbjct: 413 YAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMP 472
Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
VDSVSWNAMIAAL QHG+G +AI+LYE+MLKE ILPDRITFLT+LSAC+HAGLVKEGR
Sbjct: 473 YVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRH 532
Query: 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600
YF+TM YGI P EDHY+R IDLLCRAG FSEAK+V +S+PF+P APIWEALLAGC IH
Sbjct: 533 YFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIH 592
Query: 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660
GN++LGIQAA++L +LMP GTY+ LSNMYA LG+WD+ ARVRKLMR+RGVKKEPGCSW
Sbjct: 593 GNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSW 652
Query: 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALS 720
IEV+N VHVFLVDD HPE AVY+YLEQLV EMRKLGYVPDTKFVLHDMES+QKEYALS
Sbjct: 653 IEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALS 712
Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
THSEKLAV +G+MKLP GAT+RV KNLRICGDCHNAFK++SKVV REI+VRD KRFHHFR
Sbjct: 713 THSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFR 772
Query: 781 DGKCSCGDYW 790
+G+CSC +YW
Sbjct: 773 NGECSCSNYW 782
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/797 (65%), Positives = 644/797 (80%), Gaps = 19/797 (2%)
Query: 9 IRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVY 68
+R LA RY +QL T +AR+VHAH+++SGFKP I+NRLI+IYCKS + Y
Sbjct: 3 VRDLAYRYLTQLN----HVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITY 58
Query: 69 ARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNS 128
AR LFD+IP+PDIVARTTL++AYS+S NVKLA+++FN TPL +RDTV YNAMITAYSH +
Sbjct: 59 ARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGN 118
Query: 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVL 188
+GHAA+ LF M+R PD FTF+SVLSAL+LI +EE+ C +HC V+K GT L SV
Sbjct: 119 DGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVT 178
Query: 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD--ELSWTTMMTGYVKNDYLDAARE 246
NAL+S YV C SSP V S LM +AR+VFDE P+ E SWTTM+ GYV+ND L AARE
Sbjct: 179 NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARE 238
Query: 247 FLDGMSENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANS-- 295
LDG++ + VAWNA+ISGYV R L +M + IQ DE+TYTS+ISAC +
Sbjct: 239 LLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNE 298
Query: 296 --GLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV 353
G+F G+QVH Y+LRT +P+ F L VNNAL+T Y K ++ EAR +F++MP RD++
Sbjct: 299 KMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDII 358
Query: 354 SWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
SWNA+LS YV+A I+EA S+F M ERN+L+WTVMISGLAQNG+GEEGLKLF+QM+ EG
Sbjct: 359 SWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEG 418
Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
+PCDYAFAGAIT+C+ LG+L+NG+Q+H+Q++ G+DS LSAGNALITMY+RCGVVE+A
Sbjct: 419 LEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAE 478
Query: 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533
VF TMP VDSVSWNAMIAAL QHG+G +AIEL+EQM+KE ILPDRITFLT+L+ACNHAG
Sbjct: 479 SVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAG 538
Query: 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593
L+KEGR YF+TM YGI PGEDHYAR IDLLCRAG F +A+ VI S+PF+ APIWEAL
Sbjct: 539 LIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEAL 598
Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653
LAGCRIHGN++LGIQAA++L +L+P GTY++LSNMYA LG+WD+ ARVR LMR+RGVK
Sbjct: 599 LAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVK 658
Query: 654 KEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD 713
KEPGCSW+EV+N VHVFLVDD HPE QAVY YL+QLV EM+KLGYVPDTKFVLHDMES+
Sbjct: 659 KEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESE 718
Query: 714 QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDG 773
KE++LSTHSEKLAV +G+MKLP GAT+RV KNLRICGDCHNAFK++SKVV REIVVRD
Sbjct: 719 HKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDR 778
Query: 774 KRFHHFRDGKCSCGDYW 790
KRFHHF++G+CSCG+YW
Sbjct: 779 KRFHHFKNGECSCGNYW 795
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/800 (64%), Positives = 644/800 (80%), Gaps = 21/800 (2%)
Query: 2 MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
M N D +R +ANRYA+ L+LC P + LAR+VH ++I+ GF+P HI+NRLID+YC
Sbjct: 1 MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYC 60
Query: 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F +TP+ MRDTV YNAMI
Sbjct: 61 KSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMI 120
Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
T +SHN++G++AI LF M+ + KPD+FT+ SVL+ LAL+V++EKQC+Q H +KSG
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGA 180
Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
G TSV NAL+SVY +C SSP SL+ +AR+VFD++PE+DE SWTTMMTGYVKN
Sbjct: 181 GYVTSVSNALVSVYSRCASSP-----SLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCF 235
Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
D +E L GM EN+ VA+NA+ISGYV+ L +M+ I+LDEFTY SVI A
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
CAN+ L +LGKQVHAY+LR E +FS +N+LVTLY+KCGK NEAR IF +MP +D
Sbjct: 296 CANARLLQLGKQVHAYVLRRE-----DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKD 350
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EGF+PCDYAF+GAI SCA LGA NG+Q HAQLV G+DSSLSAGNALITMYA+CGVVE
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEE 470
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
A VF TMP +DSVSWNA+IAALGQHG+G A+++YE+MLK+GI PDRITFLTVL+AC+H
Sbjct: 471 AQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSH 530
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
AGLV +GR+YF +M Y IPPG DHYAR IDLLCR+GKFSEA+ +I+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWE 590
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNMYA G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRG 650
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKKE CSWIE++ +VH FLVDDT+HPEA+AVYKYL+ L EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVE 710
Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
SD KE L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+SKVV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIIL 770
Query: 771 RDGKRFHHFRDGKCSCGDYW 790
RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana] gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/800 (64%), Positives = 642/800 (80%), Gaps = 21/800 (2%)
Query: 2 MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
M N D +R +ANRYA+ L+LC P + LAR+VH ++I+ GF+PR HI+NRLID+YC
Sbjct: 1 MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60
Query: 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F K P+ MRDTV YNAMI
Sbjct: 61 KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120
Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
T +SHN++G++AI LF M+ + KPDNFTF SVL+ LAL+ ++EKQC+Q H +KSG
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180
Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
G TSV NAL+SVY KC SSP SL+ +AR+VFDE+ E+DE SWTTMMTGYVKN Y
Sbjct: 181 GYITSVSNALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYF 235
Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISA 291
D E L+GM +N+ VA+NA+ISGYV+R +M+ I+LDEFTY SVI A
Sbjct: 236 DLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
CA +GL +LGKQVHAY+LR E +FS +N+LV+LY+KCGK +EAR IF +MP +D
Sbjct: 296 CATAGLLQLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 350
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EGF+PCDYAF+GAI SCA LGA NG+Q HAQL+ G+DSSLSAGNALITMYA+CGVVE
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 470
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
A VF TMP +DSVSWNA+IAALGQHG+GA A+++YE+MLK+GI PDRIT LTVL+AC+H
Sbjct: 471 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 530
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
AGLV +GR+YF++M Y IPPG DHYAR IDLLCR+GKFS+A+ VI+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 590
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNM+A G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKKE CSWIE++ +VH FLVDDT+HPEA+AVY YL+ L EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVE 710
Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
SD KE L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+S VV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIIL 770
Query: 771 RDGKRFHHFRDGKCSCGDYW 790
RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor] gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/787 (54%), Positives = 559/787 (71%), Gaps = 25/787 (3%)
Query: 21 QLCDPRNPITSSLARSV---HAHMISSGF---KPREHIINRLIDIYCKSLKLVYARTLFD 74
+L R+ +SS R++ HA +++S P H+ RLI +Y S L A TLF
Sbjct: 24 RLAASRSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFR 83
Query: 75 EIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAI 134
P P VA T+L+AAY+A+ + A F+ P RDTV +NA+I+AY+ S+ A+
Sbjct: 84 ADPCP--VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAV 141
Query: 135 ELFRDM-RRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALI 192
+FR + ++PD+++FT++LSA + + C Q+ C+V+KSG G SV NAL+
Sbjct: 142 AVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALV 201
Query: 193 SVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMS 252
++Y+KC + ++R AR+V DEMP++D L+WTTM+ GYV+ + AAR + +
Sbjct: 202 ALYMKCEA--LEATRD----ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVD 255
Query: 253 ENVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303
V WNA+ISGYVH + +M++ R+ LDEFT+TSV+SACAN+G F GK
Sbjct: 256 VKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKS 315
Query: 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYV 363
VH + R + PE +LPVNNALVTLY KCG + AR IF+ M +D+VSWN ILS YV
Sbjct: 316 VHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYV 375
Query: 364 SAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG 423
+ +D+A +FE M +N LSW VM+SG G+ E+ LKLF++MR E KPCDY +AG
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAG 435
Query: 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD 483
AI++C LG+L++G+QLH LV G++ S SAGNALITMYARCG V+ AN +F MPN+D
Sbjct: 436 AISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNID 495
Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
SVSWNAMI+ALGQHG+G A+EL+++M+ EGI PDRI+FLTVL+ACNH+GLV EG +YFE
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFE 555
Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
+M +GI PGEDHY R IDLL RAG+ EA+D+I ++PF+P+ IWEA+L+GCR G++
Sbjct: 556 SMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDM 615
Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
+LG AA+QLF++ P H GTY+LLSN Y+ GRW DAARVRKLMRDRGVKKEPGCSWIE
Sbjct: 616 ELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEA 675
Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHS 723
NKVHVF+V DT HPEA VYK+LE + MRKLGYVPDTK VLHDME QKE+ L HS
Sbjct: 676 GNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHS 735
Query: 724 EKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGK 783
E+LAV FGL+KLP GATV VLKNLRIC DCH FMSK VGREIVVRD +RFHHF+DG+
Sbjct: 736 ERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGE 795
Query: 784 CSCGDYW 790
CSCG+YW
Sbjct: 796 CSCGNYW 802
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 790 | ||||||
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.986 | 0.986 | 0.641 | 7e-283 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.931 | 0.936 | 0.418 | 2.1e-157 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.887 | 0.897 | 0.386 | 1.7e-137 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.578 | 0.537 | 0.420 | 2.6e-130 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.556 | 0.534 | 0.446 | 2.7e-128 | |
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.536 | 0.588 | 0.469 | 5.5e-128 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.879 | 0.914 | 0.353 | 4.9e-127 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.587 | 0.468 | 0.426 | 4.9e-127 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.679 | 0.539 | 0.403 | 4e-126 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.558 | 0.495 | 0.437 | 1.5e-125 |
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2718 (961.8 bits), Expect = 7.0e-283, P = 7.0e-283
Identities = 513/800 (64%), Positives = 644/800 (80%)
Query: 2 MMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYC 61
M N D +R +ANRYA+ L+LC P + LAR+VH ++I+ GF+PR HI+NRLID+YC
Sbjct: 1 MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60
Query: 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMI 121
KS +L YAR LFDEI +PD +ARTT+++ Y AS ++ LAR +F K P+ MRDTV YNAMI
Sbjct: 61 KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120
Query: 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGT 181
T +SHN++G++AI LF M+ + KPDNFTF SVL+ LAL+ ++EKQC+Q H +KSG
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180
Query: 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYL 241
G TSV NAL+SVY KC SSP SL+ +AR+VFDE+ E+DE SWTTMMTGYVKN Y
Sbjct: 181 GYITSVSNALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYF 235
Query: 242 DAAREFLDGMSENVG-VAWNALISGYVHR-------EL--KMLMLRIQLDEFTYTSVISA 291
D E L+GM +N+ VA+NA+ISGYV+R E+ +M+ I+LDEFTY SVI A
Sbjct: 236 DLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 292 CANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351
CA +GL +LGKQVHAY+LR E +FS +N+LV+LY+KCGK +EAR IF +MP +D
Sbjct: 296 CATAGLLQLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 350
Query: 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411
LVSWNA+LS YVS+G I EAK +F+ M+E+N+LSW +MISGLA+NG+GEEGLKLFS M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410
Query: 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471
EGF+PCDYAF+GAI SCA LGA NG+Q HAQL+ G+DSSLSAGNALITMYA+CGVVE
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 470
Query: 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531
A VF TMP +DSVSWNA+IAALGQHG+GA A+++YE+MLK+GI PDRIT LTVL+AC+H
Sbjct: 471 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 530
Query: 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWE 591
AGLV +GR+YF++M Y IPPG DHYAR IDLLCR+GKFS+A+ VI+SLPFKP+A IWE
Sbjct: 531 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 590
Query: 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651
ALL+GCR+HGN++LGI AA++LF L+P H GTY+LLSNM+A G+W++ ARVRKLMRDRG
Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650
Query: 652 VKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDME 711
VKKE CSWIE++ +VH FLVDDT+HPEA+AVY YL+ L EMR+LGYVPDT FVLHD+E
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVE 710
Query: 712 SD-QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVV 770
SD KE L+THSEK+AVAFGLMKLP G T+R+ KNLR CGDCHN F+F+S VV R+I++
Sbjct: 711 SDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIIL 770
Query: 771 RDGKRFHHFRDGKCSCGDYW 790
RD KRFHHFR+G+CSCG++W
Sbjct: 771 RDRKRFHHFRNGECSCGNFW 790
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1534 (545.1 bits), Expect = 2.1e-157, P = 2.1e-157
Identities = 324/775 (41%), Positives = 479/775 (61%)
Query: 34 ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
A+ VH +I SG +++N L+++Y K+ ++AR LFDE+P + T+++AYS
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 94 SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
++ E F++ P RD+V + MI Y + H AI + DM ++ ++P FT T
Sbjct: 93 RGDMDSTCEFFDQLP--QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 154 SVLSALALIVEEEKQCMQ----MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209
+VL+++A +CM+ +H +VK G SV N+L+++Y KC P +
Sbjct: 151 NVLASVAAT-----RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMM----- 199
Query: 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269
A+ VFD M RD SW M+ +++ +D A + M+E V WN++ISG+ R
Sbjct: 200 ---AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 270 --ELKML-----MLRIQL---DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319
+L+ L MLR L D FT SV+SACAN +GKQ+H++++ T +
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF----DI 312
Query: 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV--SWNAILSAYVSAGLIDEAKSLFEA 377
S V NAL+++Y +CG V AR + Q +DL + A+L Y+ G +++AK++F +
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVS 372
Query: 378 MRERNLLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436
+++R++++WT MI G Q+G YGE + LF M G +P Y A ++ + L +L +
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGE-AINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSH 431
Query: 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSVSWNAMIAALG 495
G+Q+H V SG S+S NALITMYA+ G + +A+ F+ + D+VSW +MI AL
Sbjct: 432 GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALA 491
Query: 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555
QHG+ A+EL+E ML EG+ PD IT++ V SAC HAGLV +GR+YF+ M I P
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551
Query: 556 DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615
HYA +DL RAG EA++ I+ +P +P W +LL+ CR+H NIDLG AAE+L
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611
Query: 616 LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDT 675
L P ++G Y L+N+Y+ G+W++AA++RK M+D VKKE G SWIEV +KVHVF V+D
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671
Query: 676 AHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKL 735
HPE +Y ++++ E++K+GYVPDT VLHD+E + KE L HSEKLA+AFGL+
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731
Query: 736 PGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
P T+R++KNLR+C DCH A KF+SK+VGREI+VRD RFHHF+DG CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 282/729 (38%), Positives = 419/729 (57%)
Query: 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRD 139
DI I++Y + A +F + P +V YN MI+ Y N A +LF +
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMP--RWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 140 MRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALI----SVY 195
M D+ N + L E + V T L N + SV+
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 196 VKCVSSPFVSSRSLMGA---------ARRVFDEMPERDELSWTTMMTGYVKNDYLDAARE 246
+ VS +L+ A A +F +SW ++ G+VK + AR+
Sbjct: 181 DRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQ 240
Query: 247 FLDGMSENVGVAWNALISGYVHR----ELKMLMLRIQL-DEFTYTSVISACANSGLFRLG 301
F D M+ V+WN +I+GY E + L + D FT+T+++S + +
Sbjct: 241 FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEA 300
Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSA 361
+++ + PE + NA++ Y + ++ A+++F+ MP R++ +WN +++
Sbjct: 301 RELFDKM--------PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352
Query: 362 YVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421
Y G I EAK+LF+ M +R+ +SW MI+G +Q+G+ E L+LF QM EG + +F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481
+ A+++CA + ALE G+QLH +LV GY++ GNAL+ MY +CG +E AN +F M
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541
D VSWN MIA +HG G A+ +E M +EG+ PD T + VLSAC+H GLV +GR+Y
Sbjct: 473 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 532
Query: 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG 601
F TM YG+ P HYA +DLL RAG +A +++ ++PF+P A IW LL R+HG
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592
Query: 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWI 661
N +L AA+++F + P ++G YVLLSN+YA+ GRW D ++R MRD+GVKK PG SWI
Sbjct: 593 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Query: 662 EVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALST 721
E+ NK H F V D HPE ++ +LE+L L M+K GYV T VLHD+E ++KE +
Sbjct: 653 EIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRY 712
Query: 722 HSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRD 781
HSE+LAVA+G+M++ G +RV+KNLR+C DCHNA K+M+++ GR I++RD RFHHF+D
Sbjct: 713 HSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKD 772
Query: 782 GKCSCGDYW 790
G CSCGDYW
Sbjct: 773 GSCSCGDYW 781
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 197/468 (42%), Positives = 302/468 (64%)
Query: 334 CGKVNEAR---DIFNQMPERDLVS----WNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386
CG +++ R + Q +R L S N+++S +V + +++A+ FE++ E+NL+S+
Sbjct: 383 CGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSY 442
Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH 446
+ G +N E+ KL S++ + FA ++ A +G++ G Q+H+Q+V
Sbjct: 443 NTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK 502
Query: 447 SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506
G + NALI+MY++CG ++ A+ VFN M N + +SW +MI +HG R +E
Sbjct: 503 LGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLET 562
Query: 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
+ QM++EG+ P+ +T++ +LSAC+H GLV EG R+F +M+ + I P +HYA +DLLC
Sbjct: 563 FNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLC 622
Query: 567 RAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626
RAG ++A + I+++PF+ +W L CR+H N +LG AA ++ +L P+ Y+
Sbjct: 623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQ 682
Query: 627 LSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKY 686
LSN+YA G+W+++ +R+ M++R + KE GCSWIEV +K+H F V DTAHP A +Y
Sbjct: 683 LSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDE 742
Query: 687 LEQLVLEMRKLGYVPDTKFVLHDMESD----QKEYALSTHSEKLAVAFGLMKLPGGATVR 742
L++L+ E+++ GYVPDT VLH +E + +KE L HSEK+AVAFGL+ VR
Sbjct: 743 LDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVR 802
Query: 743 VLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
V KNLR+CGDCHNA K++S V GREIV+RD RFHHF+DGKCSC DYW
Sbjct: 803 VFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 197/441 (44%), Positives = 290/441 (65%)
Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
D+ NA++ Y GL+D A+++F + +++SW +ISG AQNG+ E +++++ M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 411 LEGFKPCDYA-FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469
EG + + + +C+ GAL G +LH +L+ +G + +L MY +CG +
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 470 EAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
E A +F +P V+SV WN +IA G HG+G +A+ L+++ML EG+ PD ITF+T+LSAC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589
+H+GLV EG+ FE M YGI P HY +D+ RAG+ A I S+ +P A I
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649
W ALL+ CR+HGN+DLG A+E LF++ P H G +VLLSNMYA+ G+W+ +R +
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 650 RGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHD 709
+G++K PG S +EVDNKV VF + HP + +Y+ L L +++ +GYVPD +FVL D
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 710 MESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIV 769
+E D+KE+ L +HSE+LA+AF L+ P T+R+ KNLR+CGDCH+ KF+SK+ REI+
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 770 VRDGKRFHHFRDGKCSCGDYW 790
VRD RFHHF++G CSCGDYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 5.5e-128, Sum P(2) = 5.5e-128
Identities = 202/430 (46%), Positives = 283/430 (65%)
Query: 366 GLIDEAKSLFEAMRERNLLSWTVMISGLAQNG-YGEEGLKLFSQMRLEGFKPCDYAFAGA 424
G+ D K +F+ + +L+ W MISG + N EE +K F QM+ G +P D +F
Sbjct: 293 GMYDSEK-VFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCV 351
Query: 425 ITSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAANCVFNTMPNVD 483
++C+ L + +Q+H + S S+ +S NALI++Y + G ++ A VF+ MP ++
Sbjct: 352 TSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELN 411
Query: 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFE 543
+VS+N MI QHG+G A+ LY++ML GI P++ITF+ VLSAC H G V EG+ YF
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFN 471
Query: 544 TMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603
TM + I P +HY+ IDLL RAGK EA+ ID++P+KP + W ALL CR H N+
Sbjct: 472 TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNM 531
Query: 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEV 663
L +AA +L + P A YV+L+NMYA+ +W++ A VRK MR + ++K+PGCSWIEV
Sbjct: 532 ALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEV 591
Query: 664 DNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVL-HDMESDQ--KEYALS 720
K HVF+ +D +HP + V +YLE+++ +M+K+GYV D K+ + + E+ + +E L
Sbjct: 592 KKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLG 651
Query: 721 THSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780
HSEKLAVAFGLM G + V+KNLRICGDCHNA KFMS V GREI+VRD RFH F+
Sbjct: 652 HHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFK 711
Query: 781 DGKCSCGDYW 790
DGKCSCGDYW
Sbjct: 712 DGKCSCGDYW 721
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 4.9e-127, Sum P(2) = 4.9e-127
Identities = 259/732 (35%), Positives = 403/732 (55%)
Query: 78 QPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVF-YNAMITAYSHNSNGHAAIEL 136
Q D LIA+YS + A + P T++ ++++I A + +I +
Sbjct: 47 QNDGYISAKLIASYSNYNCFNDADLVLQSIP---DPTIYSFSSLIYALTKAKLFTQSIGV 103
Query: 137 FRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYV 196
F M + PD+ ++ A + K Q+HC SG + V ++ +Y+
Sbjct: 104 FSRMFSHGLIPDSHVLPNLFKVCAEL-SAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYM 162
Query: 197 KCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD-----GM 251
+C R MG AR+VFD M ++D ++ + ++ Y + L+ L G+
Sbjct: 163 RC-------GR--MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213
Query: 252 SENVGVAWNALISGY----VHRELKMLMLRIQL-----DEFTYTSVISACANSGLFRLGK 302
N+ V+WN ++SG+ H+E ++ +I D+ T +SV+ + +S + +G+
Sbjct: 214 EANI-VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272
Query: 303 QVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAY 362
+H Y+++ V +A++ +Y K G V +FNQ + NA ++
Sbjct: 273 LIHGYVIKQGLLKDK----CVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328
Query: 363 VSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418
GL+D+A +FE +E+ N++SWT +I+G AQNG E L+LF +M++ G KP
Sbjct: 329 SRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388
Query: 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478
+ +C + AL +GR H V ++ G+ALI MYA+CG + + VFN
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448
Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
MP + V WN+++ HG + ++E +++ + PD I+F ++LSAC GL EG
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598
+YF+ M YGI P +HY+ ++LL RAGK EA D+I +PF+P + +W ALL CR
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568
Query: 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGC 658
+ N+DL AAE+LF L P + GTYVLLSN+YA G W + +R M G+KK PGC
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628
Query: 659 SWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYA 718
SWI+V N+V+ L D +HP+ + + ++++ EMRK G+ P+ F LHD+E ++E
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQM 688
Query: 719 LSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHH 778
L HSEKLAV FGL+ P G ++V+KNLRICGDCH KF+S GREI +RD RFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748
Query: 779 FRDGKCSCGDYW 790
F+DG CSCGD+W
Sbjct: 749 FKDGICSCGDFW 760
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 4.9e-127, Sum P(2) = 4.9e-127
Identities = 201/471 (42%), Positives = 302/471 (64%)
Query: 327 LVTLYWKCG---KVNEARDIFNQMPER--DLVSW--NAILSAYVSAGLIDEAKSLFEAMR 379
L T++ CG +N+ + + + DL W + IL YV G + A+ F+++
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579
Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQ 439
+ ++WT MISG +NG E +FSQMRL G P ++ A + + L ALE GRQ
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639
Query: 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499
+HA + + G +L+ MYA+CG ++ A C+F + ++ +WNAM+ L QHG
Sbjct: 640 IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699
Query: 500 GARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559
G ++L++QM GI PD++TF+ VLSAC+H+GLV E ++ +MHG YGI P +HY+
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYS 759
Query: 560 RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619
D L RAG +A+++I+S+ + SA ++ LLA CR+ G+ + G + A +L +L P
Sbjct: 760 CLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL 819
Query: 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPE 679
+ YVLLSNMYA +WD+ R +M+ VKK+PG SWIEV NK+H+F+VDD ++ +
Sbjct: 820 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQ 879
Query: 680 AQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGA 739
+ +Y+ ++ ++ ++++ GYVP+T F L D+E ++KE AL HSEKLAVAFGL+ P
Sbjct: 880 TELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST 939
Query: 740 TVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
+RV+KNLR+CGDCHNA K+++KV REIV+RD RFH F+DG CSCGDYW
Sbjct: 940 PIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 4.0e-126, Sum P(3) = 4.0e-126
Identities = 224/555 (40%), Positives = 338/555 (60%)
Query: 250 GMSENVGVAWNALIS-----GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304
G+ NV V+ NAL++ GY++ K+ + D+ ++ S+I A A S L + V
Sbjct: 445 GIDLNVSVS-NALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER-SLPEAV 502
Query: 305 HAYLLRTEAKPTPE---FSLPVNNALVTL-YWKCGKVNEARDIFNQMPERDLVSWNAILS 360
+L A FS V +A+ +L + + GK + N + + + + NA+++
Sbjct: 503 VCFLNAQRAGQKLNRITFS-SVLSAVSSLSFGELGKQIHGLALKNNIAD-EATTENALIA 560
Query: 361 AYVSAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419
Y G +D + +F M ER + ++W MISG N + L L M G + +
Sbjct: 561 CYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 620
Query: 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479
+A +++ A + LE G ++HA V + +S + G+AL+ MY++CG ++ A FNTM
Sbjct: 621 MYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTM 680
Query: 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEG 538
P +S SWN+MI+ +HG G A++L+E M +G P D +TF+ VLSAC+HAGL++EG
Sbjct: 681 PVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740
Query: 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALL-AGC 597
++FE+M YG+ P +H++ D+L RAG+ + +D I+ +P KP+ IW +L A C
Sbjct: 741 FKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACC 800
Query: 598 RIHGN-IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEP 656
R +G +LG +AAE LFQL P +A YVLL NMYA GRW+D + RK M+D VKKE
Sbjct: 801 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 860
Query: 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKE 716
G SW+ + + VH+F+ D +HP+A +YK L++L +MR GYVP T F L+D+E + KE
Sbjct: 861 GYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 920
Query: 717 YALSTHSEKLAVAFGLMKLPGGAT-VRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKR 775
LS HSEKLAVAF L +R++KNLR+CGDCH+AFK++SK+ GR+I++RD R
Sbjct: 921 EILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNR 980
Query: 776 FHHFRDGKCSCGDYW 790
FHHF+DG CSC D+W
Sbjct: 981 FHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 199/455 (43%), Positives = 292/455 (64%)
Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQ 408
+RD N ++ Y G ID A +F M +R+L++W MI+G + + E+ L L +
Sbjct: 437 DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHK 496
Query: 409 MR-LE----------GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457
M+ LE KP + SCA L AL G+++HA + + + ++ G+
Sbjct: 497 MQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 556
Query: 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
AL+ MYA+CG ++ + VF+ +P + ++WN +I A G HGNG AI+L M+ +G+ P
Sbjct: 557 ALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKP 616
Query: 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577
+ +TF++V +AC+H+G+V EG R F M YG+ P DHYA +DLL RAG+ EA +
Sbjct: 617 NEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 676
Query: 578 IDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635
++ +P F A W +LL RIH N+++G AA+ L QL P+ A YVLL+N+Y++ G
Sbjct: 677 MNMMPRDFN-KAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAG 735
Query: 636 RWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695
WD A VR+ M+++GV+KEPGCSWIE ++VH F+ D++HP+++ + YLE L MR
Sbjct: 736 LWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795
Query: 696 KLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHN 755
K GYVPDT VLH++E D+KE L HSEKLA+AFG++ G +RV KNLR+C DCH
Sbjct: 796 KEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHL 855
Query: 756 AFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790
A KF+SK+V REI++RD +RFH F++G CSCGDYW
Sbjct: 856 ATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FRI5 | PPR57_ARATH | No assigned EC number | 0.64 | 0.9860 | 0.9860 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 790 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-170 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-160 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-42 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-36 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 8e-30 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 512 bits (1320), Expect = e-170
Identities = 271/754 (35%), Positives = 398/754 (52%), Gaps = 103/754 (13%)
Query: 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSAS 94
R VHAH++ GF+ ++N LI +Y K +V AR +FD +P+
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---------------- 250
Query: 95 DNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTS 154
RD + +NAMI+ Y N +ELF MR V PD T TS
Sbjct: 251 -----------------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 155 VLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAAR 214
V+SA L+ +E+ +MH VVK+G + SV N+LI +Y S G A
Sbjct: 294 VISACELL-GDERLGREMHGYVVKTGFAVDVSVCNSLIQMY---------LSLGSWGEAE 343
Query: 215 RVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKML 274
+VF M +D +SWT M++GY KN D A E M ++
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-------------------- 383
Query: 275 MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKC 334
+ DE T SV+SACA G +G ++H R + V NAL+ +Y KC
Sbjct: 384 --NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY----VVVANALIEMYSKC 437
Query: 335 GKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394
+++A ++F+ +PE+D++ SWT +I+GL
Sbjct: 438 KCIDKALEVFHNIPEKDVI-------------------------------SWTSIIAGLR 466
Query: 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS 454
N E L F QM L KP A+++CA +GAL G+++HA ++ +G
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514
NAL+ +Y RCG + A FN+ D VSWN ++ HG G+ A+EL+ +M++ G
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574
+ PD +TF+++L AC+ +G+V +G YF +M Y I P HYA +DLL RAGK +EA
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634
+ I+ +P P +W ALL CRIH +++LG AA+ +F+L P+ G Y+LL N+YA+
Sbjct: 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 635 GRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEM 694
G+WD+ ARVRK MR+ G+ +PGCSW+EV KVH FL DD +HP+ + + LE +M
Sbjct: 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764
Query: 695 RKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCH 754
+ G + ++E + + HSE+LA+AFGL+ G + V KNL +C +CH
Sbjct: 765 KASGLAGSESSSMDEIEVSKDD-IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCH 823
Query: 755 NAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
N KF+SK+V REI VRD ++FHHF+DG+CSCGD
Sbjct: 824 NTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 480 bits (1236), Expect = e-160
Identities = 226/662 (34%), Positives = 357/662 (53%), Gaps = 70/662 (10%)
Query: 131 HAAIELFRDMR-RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLN 189
A+ELF + T+ +++ A + ++ + ++ V SG ++N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYV-KNDYLDAAREFL 248
++ ++VKC ++ ARR+FDEMPER+ SW T++ G V +Y +A F
Sbjct: 163 RVLLMHVKC---------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 249 DGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYL 308
+ W T+ ++ A A G R G+Q+H +
Sbjct: 214 E--------MWEDGSDAEPR---------------TFVVMLRASAGLGSARAGQQLHCCV 250
Query: 309 LRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLI 368
L+T S AL+ +Y KCG + +AR +F+ MPE+ V+WN++L+ Y
Sbjct: 251 LKTGVVGDTFVSC----ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY------ 300
Query: 369 DEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428
A +GY EE L L+ +MR G + F+ I
Sbjct: 301 -------------------------ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN 488
+ L LE+ +Q HA L+ +G+ + A AL+ +Y++ G +E A VF+ MP + +SWN
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395
Query: 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGP 548
A+IA G HG G +A+E++E+M+ EG+ P+ +TFL VLSAC ++GL ++G F++M
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
Query: 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQ 608
+ I P HYA I+LL R G EA +I PFKP+ +W ALL CRIH N++LG
Sbjct: 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515
Query: 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVH 668
AAE+L+ + P YV+L N+Y + GR +AA+V + ++ +G+ P C+WIEV + H
Sbjct: 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575
Query: 669 VFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAV 728
F D HP+++ +Y+ L++L+ E+ + GYV + +L D++ D+++ + HSEKLA+
Sbjct: 576 SFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAI 635
Query: 729 AFGLMKLPGGATVRVLKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788
AFGL+ +++ ++ RIC DCH KF++ V REIVVRD RFHHF+ GKCSCGD
Sbjct: 636 AFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGD 695
Query: 789 YW 790
YW
Sbjct: 696 YW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 9e-60
Identities = 151/522 (28%), Positives = 227/522 (43%), Gaps = 101/522 (19%)
Query: 110 KM--RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK 167
KM RD +N ++ Y+ A+ L+ M V+PD +TF VL I +
Sbjct: 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI-PDLA 204
Query: 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELS 227
+ ++H VV+ G L V+NALI++YVKC + +AR VFD MP RD +S
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGD---------VVSARLVFDRMPRRDCIS 255
Query: 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287
W M++GY +N E M L + D T TS
Sbjct: 256 WNAMISGYFENGECLEGLELF----------------------FTMRELSVDPDLMTITS 293
Query: 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM 347
VISAC G RLG+++H Y+++T + V N+L+ QM
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGF----AVDVSVCNSLI-----------------QM 332
Query: 348 PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407
Y+S G EA+ +F M ++ +SWT MISG +NG ++ L+ ++
Sbjct: 333 --------------YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378
Query: 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467
M + P + A +++CA LG L+ G +LH G S + NALI MY++C
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
++ A VF+ +P D +SW ++IA L + A+ + QML + P+ +T + LS
Sbjct: 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 528 ACNHAGLVKEGRRY----FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA--------K 575
AC G + G+ T G G P +DL R G+ + A K
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQFNSHEK 552
Query: 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617
DV+ W LL G HG + A +LF M
Sbjct: 553 DVVS----------WNILLTGYVAHGKGSM----AVELFNRM 580
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-50
Identities = 137/494 (27%), Positives = 214/494 (43%), Gaps = 83/494 (16%)
Query: 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEK---QCM 170
T N+ + A + A++L M+ V D + AL + E ++ +
Sbjct: 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYV----ALFRLCEWKRAVEEGS 106
Query: 171 QMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTT 230
++ + S L + NA++S++V+ + A VF +MPERD SW
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGE---------LVHAWYVFGKMPERDLFSWNV 157
Query: 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVIS 290
++ GY K Y D A HR ML ++ D +T+ V+
Sbjct: 158 LVGGYAKAGYFDEALCLY-------------------HR---MLWAGVRPDVYTFPCVLR 195
Query: 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350
C G++VHA+++R E + V NAL+T+Y KCG V AR +F++MP R
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGF----ELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410
D +SWNA MISG +NG EGL+LF MR
Sbjct: 252 DCISWNA-------------------------------MISGYFENGECLEGLELFFTMR 280
Query: 411 LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470
P I++C LG GR++H +V +G+ +S N+LI MY G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 471 AANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530
A VF+ M D+VSW AMI+ ++G +A+E Y M ++ + PD IT +VLSAC
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKFSEAKDVIDSLPFKPS 586
G + G + E G Y I++ + +A +V ++P K
Sbjct: 401 CLGDLDVGVKLHE-----LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-D 454
Query: 587 APIWEALLAGCRIH 600
W +++AG R++
Sbjct: 455 VISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 5e-43
Identities = 106/388 (27%), Positives = 178/388 (45%), Gaps = 74/388 (19%)
Query: 34 ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSA 93
++V+ H+ SSGF+P ++++NR++ ++ K L+ AR LFDE+P+
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--------------- 186
Query: 94 SDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFT 153
R+ + +I N A LFR+M D + TF
Sbjct: 187 ------------------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 154 SVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAA 213
+L A A + + Q+HC V+K+G T V ALI +Y KC + A
Sbjct: 229 VMLRASAGL-GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC---------GDIEDA 278
Query: 214 RRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKM 273
R VFD MPE+ ++W +M+ GY + Y + A M ++
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS------------------- 319
Query: 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK 333
+ +D+FT++ +I + L KQ HA L+RT + N ALV LY K
Sbjct: 320 ---GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF----PLDIVANTALVDLYSK 372
Query: 334 CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVM 389
G++ +AR++F++MP ++L+SWNA+++ Y + G +A +FE M N +++ +
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 390 ISGLAQNGYGEEGLKLFSQM-RLEGFKP 416
+S +G E+G ++F M KP
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 1e-42
Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 49/352 (13%)
Query: 273 MLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332
M LR+ +DE Y ++ C G +V + L + P + + NA+++++
Sbjct: 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS----HPSLGVRLGNAMLSMFV 132
Query: 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISG 392
+ G++ A +F +MPERDL SWN V++ G
Sbjct: 133 RFGELVHAWYVFGKMPERDLFSWN-------------------------------VLVGG 161
Query: 393 LAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS 452
A+ GY +E L L+ +M G +P Y F + +C G+ L GR++HA +V G++
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221
Query: 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
+ NALITMY +CG V +A VF+ MP D +SWNAMI+ ++G +EL+ M +
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED----HYARFIDLLCRA 568
+ PD +T +V+SAC G + GR MHG Y + G I +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGRE----MHG-YVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620
G + EA+ V + K A W A+++G +G D A + + LM
Sbjct: 337 GSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPD----KALETYALMEQD 383
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-36
Identities = 107/385 (27%), Positives = 181/385 (47%), Gaps = 77/385 (20%)
Query: 33 LARSVHAHMISSGFKPREHIINRLIDI-YCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91
L R +H +++ +GF +D+ C S LI Y
Sbjct: 306 LGREMHGYVVKTGFA---------VDVSVCNS-----------------------LIQMY 333
Query: 92 SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFT 151
+ + A ++F++ ++ +D V + AMI+ Y N A+E + M +D+V PD T
Sbjct: 334 LSLGSWGEAEKVFSR--METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 152 FTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMG 211
SVLSA A + + + +++H + G + V NALI +Y KC +
Sbjct: 392 IASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKC---------KCID 441
Query: 212 AARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHREL 271
A VF +PE+D +SWT+++ G N+ R F ALI
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNN-----RCF------------EALIF------F 478
Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
+ ++L ++ + T + +SACA G GK++HA++LRT + LP NAL+ LY
Sbjct: 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI--GFDGFLP--NALLDLY 534
Query: 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----LSWT 387
+CG++N A + FN E+D+VSWN +L+ YV+ G A LF M E + +++
Sbjct: 535 VRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 388 VMISGLAQNGYGEEGLKLFSQMRLE 412
++ +++G +GL+ F M +
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 8e-30
Identities = 51/132 (38%), Positives = 78/132 (59%), Gaps = 23/132 (17%)
Query: 656 PGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESD-- 713
PGC W E L D +HP ++ E+L ++ G VP+TK + HD++++
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 714 ----QKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNL-RICGDCHNAFKFMSKVVGREI 768
K L++H+EK A+A+GL+ T R++K L R+CGDCH F++++K GREI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 769 VVRDGKRFHHFR 780
+VRD RFHHF+
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 4e-18
Identities = 80/334 (23%), Positives = 147/334 (44%), Gaps = 47/334 (14%)
Query: 87 LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVK 146
LI YS +++ AR +F+ P K TV +N+M+ Y+ + A+ L+ +MR V
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK--TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 147 PDNFTFTSVL---SALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPF 203
D FTF+ ++ S LAL+ E KQ H ++++G L AL+ +Y K
Sbjct: 323 IDQFTFSIMIRIFSRLALL-EHAKQA---HAGLIRTGFPLDIVANTALVDLYSKW----- 373
Query: 204 VSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALI 263
M AR VFD MP ++ +SW ++ GY + A E +
Sbjct: 374 ----GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE-------------- 415
Query: 264 SGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPV 323
+M+ + + T+ +V+SAC SGL G ++ + +E ++
Sbjct: 416 --------RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI--FQSMSENHRIKPRAMHY 465
Query: 324 NNALVTLYWKCGKVNEARDIFNQMPERDLVS-WNAILSAYVSAGLIDEAKSLFE---AMR 379
++ L + G ++EA + + P + V+ W A+L+A ++ + E M
Sbjct: 466 -ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524
Query: 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
L ++ V+++ +G E K+ ++ +G
Sbjct: 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
D V YN +I Y A++LF +M++ +KP+ +T++ ++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 73/327 (22%), Positives = 134/327 (40%), Gaps = 55/327 (16%)
Query: 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDI 343
T+ ++S CA+S +V L EA + L L++ K GKV+ ++
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLR--LVQEAGLKADCKL--YTTLISTCAKSGKVDAMFEV 494
Query: 344 FNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL 403
F++M V+AG+ E N+ ++ +I G A+ G +
Sbjct: 495 FHEM---------------VNAGV------------EANVHTFGALIDGCARAGQVAKAF 527
Query: 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL---VHSGYDSSLSAGNALI 460
+ MR + KP F I++C GA++ + A++ H ++ G AL+
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG-ALM 586
Query: 461 TMYARCGVVEAANCVFNTM--------PNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
A G V+ A V+ + P V + + + Q G+ A+ +Y+ M K
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEV----YTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG--PYGIPPGEDHYARFIDLLCRAGK 570
+G+ PD + F ++ HAG + + FE + GI G Y+ + A
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 571 FSEAKDV---IDSLPFKPSAPIWEALL 594
+ +A ++ I S+ +P+ AL+
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALI 726
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-10
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529
D V++N +I + G A++L+ +M K GI P+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 61/302 (20%)
Query: 252 SENVG---VAWNALI-----SGYVHR------ELKMLMLRIQLDEFTYTSVISACANSGL 297
S+NV V +NALI SG V R E+K I D T +++ ACAN+G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 298 FRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNA 357
K+V+ + K TPE V V + G + A I++ M ++ +
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPE----VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 358 ILSAYVS----AGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG 413
SA V AG +D+A FE +++ R +G
Sbjct: 651 FFSALVDVAGHAGDLDKA---FEILQD----------------------------ARKQG 679
Query: 414 FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473
K +++ + +C+ + +L+ + ++S NALIT + A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 474 CVFNTM------PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527
V + M PN ++++ ++ A + + ++L Q ++GI P+ + +
Sbjct: 740 EVLSEMKRLGLCPNT--ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
Query: 528 AC 529
C
Sbjct: 798 LC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 93/374 (24%), Positives = 158/374 (42%), Gaps = 77/374 (20%)
Query: 186 SVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER----DELSWTTMMTGYVKNDYL 241
S N L+SV C SS + A RV + E D +TT+++ K+ +
Sbjct: 438 STFNMLMSV---CASSQDID------GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 242 DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLG 301
DA E M N GV N VH T+ ++I CA +G ++
Sbjct: 489 DAMFEVFHEMV-NAGVEAN------VH---------------TFGALIDGCARAG--QVA 524
Query: 302 KQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER------DLVSW 355
K AY + P+ V NAL++ + G V+ A D+ +M D ++
Sbjct: 525 KAFGAYGIMRSKNVKPDRV--VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 356 NAILSAYVSAGLIDEAKSLFEAMRERNLLS----WTVMISGLAQNGYGEEGLKLFSQMRL 411
A++ A +AG +D AK +++ + E N+ +T+ ++ +Q G + L ++ M+
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 412 EGFKPCDYAFAGAITSCAG--------LGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463
+G KP D F A+ AG L++ R+ +L Y SSL M
Sbjct: 643 KGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY-SSL--------MG 692
Query: 464 ARC--GVVEAANCVF------NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
A + A ++ P V ++ NA+I AL + +A+E+ +M + G+
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTM--NALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 516 LPDRITFLTVLSAC 529
P+ IT+ +L A
Sbjct: 751 CPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER----NLLSWTVMISGLAQ 395
D+V++N ++ Y G ++EA LF M++R N+ +++++I GL +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 66/259 (25%), Positives = 100/259 (38%), Gaps = 66/259 (25%)
Query: 459 LITMYARCGVVEAANCVFNTM------PNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512
LI+ A+ G V+A VF+ M NV + + A+I + G A+A Y M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572
+ + PDR+ F ++SAC +G V R D+L +
Sbjct: 536 KNVKPDRVVFNALISACGQSGAV-----------------------DRAFDVLAEMK--A 570
Query: 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH--AGT---YVLL 627
E P P AL+ C G +D A++++Q++ + GT Y +
Sbjct: 571 ETH------PIDPDHITVGALMKACANAGQVD----RAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 628 SNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVF---LVDDTAHPEAQAVY 684
N + G WD A + M+ +GVK + VF LVD H A +
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPD------------EVFFSALVDVAGH--AGDLD 666
Query: 685 KYLEQLVLEMRKLGYVPDT 703
K E L + RK G T
Sbjct: 667 KAFEILQ-DARKQGIKLGT 684
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
V++N+++S Y AG ++EA LF+ M+E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
V++N +I L + G A+EL+++M + GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGI 515
V++N++I+ + G A+EL+++M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 34 ARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVARTTLIA 89
A S++ M G KP E + L+D+ + L A + + + V+ ++L+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 90 AYSASDNVKLAREMFNKT-PLKMRDTV-FYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147
A S + N K A E++ +K+R TV NA+ITA + A+E+ +M+R + P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 148 DNFTFTSVLSA----------LALIVEEEKQCMQMHCTVVKSGTGL 183
+ T++ +L A L L+ + ++ ++ + + + TGL
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414
++ +ISG + G EE L+LF +M+ +G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPD 148
YN +I A+ELF++M+ ++PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-05
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 22/71 (30%)
Query: 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283
D +++ T++ GY K ++ A + + M + I+ + +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR----------------------GIKPNVY 39
Query: 284 TYTSVISACAN 294
TY+ +I
Sbjct: 40 TYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
+++++ +I G + G EE LKLF++M+ G KP
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416
++ +I GL + G EE L+LF +M+ G +P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNL 383
V++N ++ AG ++EA LF+ M+ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145
V YN++I+ Y A+ELF++M+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (96), Expect = 9e-04
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 4/166 (2%)
Query: 479 MPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEG 538
+ + + + L G A+EL E+ L PD L L A G +E
Sbjct: 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEA 149
Query: 539 RRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVID---SLPFKPSAPIWEALL 594
+E + LL G++ EA ++++ L A L
Sbjct: 150 LELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG 209
Query: 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
G + ++ E+ +L P +A L+ + LGR+++A
Sbjct: 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 325 NALVTLYWKCGKVNEARDIFNQMPER----DLVSWNAILSAY 362
N L+ Y K GKV EA +FN+M +R ++ +++ ++
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 346 QMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR 379
+ + D+V++N ++ AG +DEA L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.15 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.09 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.99 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.98 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.52 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.81 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.75 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.27 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.09 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.07 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.06 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.89 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.83 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.65 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.61 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.56 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.34 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.12 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.76 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.74 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.42 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.64 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.07 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.99 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.26 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.17 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.07 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.91 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.26 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.71 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 88.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.2 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.8 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.31 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.21 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.79 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 83.4 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.11 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.58 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.97 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 81.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.34 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.15 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.85 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.45 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-132 Score=1167.92 Aligned_cols=753 Identities=34% Similarity=0.577 Sum_probs=714.2
Q ss_pred ccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCC----CCChHHHH
Q 003868 10 RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP----QPDIVART 85 (790)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 85 (790)
.++...++.++.++.+.+. +..|..+++.|.+.|+.|+..+|+.++..|.+.+.++.|.+++..+. .++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~--~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQ--LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4556778999999999999 99999999999999999999999999999999999999999998765 38889999
Q ss_pred HHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-
Q 003868 86 TLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE- 164 (790)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~- 164 (790)
+||++|++.|+++.|.++|++|+. ||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHH
Q 003868 165 EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAA 244 (790)
Q Consensus 165 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (790)
..+. ++|..+.+.|+.||.+++|+||.+|+++ |++++|.++|++|++||+++||+||.+|++.|++++|
T Consensus 204 ~~~~--~~~~~~~~~g~~~~~~~~n~Li~~y~k~---------g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 204 ARGR--EVHAHVVRFGFELDVDVVNALITMYVKC---------GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hhHH--HHHHHHHHcCCCcccchHhHHHHHHhcC---------CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 8888 9999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhccc----CCcchhhHHHHhhhhhHH---------HHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 245 REFLDGMSE----NVGVAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRT 311 (790)
Q Consensus 245 ~~l~~~m~~----~~~~~~~~li~~~~~~~~---------~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (790)
+++|++|.+ +|.++|+++|.++.+.+. .|...|+.||..+|++++.+|++.|+++.|.++|+.|..
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 351 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET- 351 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Confidence 999999965 366788888888877665 677788888888888888888888888888888887753
Q ss_pred cCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---------------------------------------CCh
Q 003868 312 EAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---------------------------------------RDL 352 (790)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------------------------------------~~~ 352 (790)
+|..+||++|.+|++.|++++|.++|++|.+ ++.
T Consensus 352 -------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 352 -------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 4677888888888888888888888888732 344
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 353 VSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
.+||+||.+|++.|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 56677777888888888888899999999999999999999999999999999999986 59999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+|+|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLV 672 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~ 672 (790)
|+.+|+.+|+.+.|+.+++++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhcCCCCCCeEEEEecccccCC
Q 003868 673 DDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGD 752 (790)
Q Consensus 673 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~nl~~c~~ 752 (790)
||.+||+.++||..|+++..+|++.||.||+...+ +.++++|+..+++||||||+|||||++|+|+||||+||||||+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999877 55788999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhhcCcEEEEecCCcccccCCCccCCCC
Q 003868 753 CHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 788 (790)
Q Consensus 753 ~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~sc~~ 788 (790)
||+++||||++.+|||||||.+|||||+||+|||||
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-119 Score=1037.28 Aligned_cols=611 Identities=36% Similarity=0.661 Sum_probs=600.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHH
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDD-VKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLN 189 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 189 (790)
++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.+. ..+. ++|..+.+.|+.||..++|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~--~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK--AVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHhCCCcchHHHH
Confidence 577899999999999999999999999999865 78999999999999999998 8888 9999999999999999999
Q ss_pred HHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhh
Q 003868 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHR 269 (790)
Q Consensus 190 ~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~ 269 (790)
.|+.+|+++ |++++|.++|++|++||+++||++|.+|++.|++++|+++|++|
T Consensus 163 ~Li~~y~k~---------g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M------------------ 215 (697)
T PLN03081 163 RVLLMHVKC---------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM------------------ 215 (697)
T ss_pred HHHHHHhcC---------CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH------------------
Confidence 999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC
Q 003868 270 ELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349 (790)
Q Consensus 270 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 349 (790)
...|+.||..||+.++.+|++.|+.+.+.++|..+.+ .|..+|..++|+|+++|+++|++++|.++|++|.+
T Consensus 216 ----~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~----~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 216 ----WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ----HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH----hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 7889999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 429 (790)
+|+++||+||.+|++.|+ .++|+++|++|.+.|+.||..||++++.+|+
T Consensus 288 ~~~vt~n~li~~y~~~g~-------------------------------~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGY-------------------------------SEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred CChhHHHHHHHHHHhCCC-------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999888 8999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
+.|++++|.++|..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 003868 510 MLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPI 589 (790)
Q Consensus 510 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 589 (790)
|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|+.+|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEE
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHV 669 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~ 669 (790)
|++|+.+|+.+|+++.|..++++++++.|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhcCCCCCCeEEEEecccc
Q 003868 670 FLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRI 749 (790)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~nl~~ 749 (790)
|.+||..||+..+||..+.++..+|++.||.||+.++++++++++|+..+++||||||+||||+++|+|+||||+|||||
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~ 656 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhcCcEEEEecCCcccccCCCccCCCCCC
Q 003868 750 CGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 790 (790)
Q Consensus 750 c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~sc~~~~ 790 (790)
|+|||+|+||||++.+|||||||.+|||||+||+|||+|||
T Consensus 657 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=670.45 Aligned_cols=556 Identities=25% Similarity=0.330 Sum_probs=533.3
Q ss_pred cchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHH
Q 003868 11 TLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTT 86 (790)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ 86 (790)
++..+|+.++.+|++.+. ++.|.++|..|...|+.||..+|+.+|.+|++.+++..+.+++..|.+ ||..+||+
T Consensus 150 ~d~~~~n~li~~~~~~g~--~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGY--FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCeeEHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 567799999999999999 999999999999999999999999999999999999999999998874 89999999
Q ss_pred HHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-h
Q 003868 87 LIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-E 165 (790)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~ 165 (790)
||.+|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.++ .
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHH
Q 003868 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAR 245 (790)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 245 (790)
.+. ++|..+.+.|+.||..++|+||.+|+++ |++++|.++|++|.+||+++||++|.+|+++|++++|+
T Consensus 306 ~a~--~l~~~~~~~g~~~d~~~~n~Li~~y~k~---------g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 306 LGR--EMHGYVVKTGFAVDVSVCNSLIQMYLSL---------GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHH--HHHHHHHHhCCccchHHHHHHHHHHHhc---------CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 998 9999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHH
Q 003868 246 EFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNN 325 (790)
Q Consensus 246 ~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 325 (790)
++|++| ...|+.||..||++++.+|++.|+++.|.++|+.+.+ .|..++..++|
T Consensus 375 ~lf~~M----------------------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~----~g~~~~~~~~n 428 (857)
T PLN03077 375 ETYALM----------------------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER----KGLISYVVVAN 428 (857)
T ss_pred HHHHHH----------------------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH----hCCCcchHHHH
Confidence 999999 8899999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCChHHH
Q 003868 326 ALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMR---ERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 326 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 402 (790)
+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|..+.+
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence 999999999999999999999999999999999999999999999999999997 47889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN- 481 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 481 (790)
.+++..|.+.|+.+|..++++++..|++.|++++|.++|..+ .+|..+||++|.+|++.|+.++|.++|++|.+
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999886 68999999999999999999999999999974
Q ss_pred ---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 482 ---VDSVSWNAMIAALGQHGNGARAIELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 482 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
||.+||+++|.+|++.|++++|.++|++|. +.|+.|+..+|+.++.++++.|++++|.+++++| .+.|+..+
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~ 659 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAV 659 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHH
Confidence 899999999999999999999999999999 7899999999999999999999999999999998 46899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
|++|+.+|...|+.+.|+...+++ ...| +...|..|.+.|...|++++|.++.+.|.+.
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999888777664 4456 4566778888999999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-65 Score=583.84 Aligned_cols=506 Identities=17% Similarity=0.187 Sum_probs=369.8
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHH
Q 003868 79 PDIVARTTLIAAYSASDNVKLAREMFNKTPLK---MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV 155 (790)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 155 (790)
++...|..+++.+++.|++++|.++|++|+.. .++..+++.++.+|.+.|..++|+++|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 44445555555555555555555555555542 12333344455555555555555555555542 555555555
Q ss_pred HHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC----CCCeeeHHH
Q 003868 156 LSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP----ERDELSWTT 230 (790)
Q Consensus 156 l~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~ 230 (790)
|.+|++.++ ..+. +++..|.+.|+.||..+||+||.+|+++ |++++|.++|++|. .||.++|++
T Consensus 444 L~a~~k~g~~e~A~--~lf~~M~~~Gl~pD~~tynsLI~~y~k~---------G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 444 MSVCASSQDIDGAL--RVLRLVQEAGLKADCKLYTTLISTCAKS---------GKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred HHHHHhCcCHHHHH--HHHHHHHHcCCCCCHHHHHHHHHHHHhC---------cCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 555555555 5555 5555555555666666666666667777 88888888888887 478888999
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 003868 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (790)
||.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.++++.|..
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M----------------------~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIM----------------------RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHH----------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999888 7788889999999999999988888888888888865
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHH
Q 003868 311 TEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386 (790)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 386 (790)
.+ .+..||..+|++||++|+++|++++|.++|+.|.+ |+..+||++|.+|++.|+
T Consensus 571 ~~--~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~------------------- 629 (1060)
T PLN03218 571 ET--HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD------------------- 629 (1060)
T ss_pred hc--CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-------------------
Confidence 11 34566777777777777777777777777777654 344566666666666655
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||++|+++
T Consensus 630 ------------~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 630 ------------WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred ------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 467 GVVEAANCVFNTMP----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 467 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777774 47777788888888777888888888887777777788778887777777777788888888
Q ss_pred HHcccCCCCCCChhHHHHHHHHHH----hc-------------------CChHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLC----RA-------------------GKFSEAKDVIDSL---PFKPSAPIWEALLAG 596 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~----~~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~ll~~ 596 (790)
..|.+. |+.||..+|++|++++. ++ +..++|..+|++| ++.||..+|++++.+
T Consensus 778 ~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 778 SQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 777775 77777777777776532 22 2246799999998 789999999999987
Q ss_pred HHHhCCHHHHHHHHHHHHh-cCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 597 CRIHGNIDLGIQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
+.+.+..+.+..+++.+.. -.+++..+|+.|++++.+. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7788888888888776543 3566778999999987322 368999999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=586.57 Aligned_cols=525 Identities=15% Similarity=0.199 Sum_probs=477.9
Q ss_pred ccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHH
Q 003868 10 RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGF-KPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLI 88 (790)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 88 (790)
.++...|..++..|.+.|+ +..|.++++.|.+.|+ .++..+++.++..|.+.|.+++|..+|..|..||..+|+.||
T Consensus 367 ~~~~~~~~~~y~~l~r~G~--l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGR--IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcC--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456778888888888888 9999999999999996 467788889999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHhhCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-h
Q 003868 89 AAYSASDNVKLAREMFNKTPLK--MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-E 165 (790)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~ 165 (790)
.+|++.|+++.|.++|+.|... .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+ .
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999865 789999999999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC------CCCeeeHHHHHHHHHhCC
Q 003868 166 EKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP------ERDELSWTTMMTGYVKND 239 (790)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g 239 (790)
.+. .++..|.+.|+.||..+||.||.+|++. |++++|.++|++|. .||.++|+++|.+|++.|
T Consensus 525 eAl--~lf~~M~~~Gv~PD~vTYnsLI~a~~k~---------G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 525 KAF--GAYGIMRSKNVKPDRVVFNALISACGQS---------GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 888 9999999999999999999999999999 99999999999995 479999999999999999
Q ss_pred ChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC
Q 003868 240 YLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF 319 (790)
Q Consensus 240 ~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (790)
++++|.++|++| .+.|+.|+..+|+.+|.+|++.|++++|.++|..|.+ .|..|
T Consensus 594 ~ldeA~elf~~M----------------------~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~P 647 (1060)
T PLN03218 594 QVDRAKEVYQMI----------------------HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKP 647 (1060)
T ss_pred CHHHHHHHHHHH----------------------HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC
Confidence 999999999999 7889999999999999999999999999999999999 88999
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhc----cCChhHHHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMR----ERNLLSWTVMIS 391 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~ 391 (790)
|..+|++|+++|++.|++++|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+||.||.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999974 799999999999999999999999999996 478999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcC
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA----RCG 467 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g 467 (790)
+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++. +++
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 334
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+..++...|+.+...+...| .++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|..
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred hhhhhhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 44333334433332333333 456999999999999999999999999888888899999999998876
Q ss_pred CCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 003868 548 PYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAP 588 (790)
Q Consensus 548 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 588 (790)
. +..|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 876 ~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 876 S-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5 7888999999999988432 46899999988 6677664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=588.00 Aligned_cols=465 Identities=25% Similarity=0.409 Sum_probs=444.5
Q ss_pred hHHHHHHhhcCCCCCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHHHH
Q 003868 14 NRYASQLQLCDPRNPITSSLARSVHAHMISSG-FKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLI 88 (790)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 88 (790)
.++..++..+.+.++ +..|.+++..|...+ +.||..+|+.++.+|++.++++.|.+++..|.+ ||..+||.|+
T Consensus 88 ~~~~~~i~~l~~~g~--~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 88 VSLCSQIEKLVACGR--HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eeHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 478999999999999 999999999999865 789999999999999999999999999999974 9999999999
Q ss_pred HHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhh
Q 003868 89 AAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEK 167 (790)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~ 167 (790)
++|++.|+++.|.++|++|+. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+. ..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999 888
Q ss_pred hhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
. ++|..+.+.|+.+|..++|+||++|+++ |++++|.++|++|+++|+++||+||.+|+++|++++|+++
T Consensus 244 ~--~l~~~~~~~g~~~d~~~~n~Li~~y~k~---------g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 244 Q--QLHCCVLKTGVVGDTFVSCALIDMYSKC---------GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred H--HHHHHHHHhCCCccceeHHHHHHHHHHC---------CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 8 9999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
|++| ...|+.||..||++++.+|++.|+++.|.++|..+.+ .|..+|..++|+|
T Consensus 313 f~~M----------------------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~----~g~~~d~~~~~~L 366 (697)
T PLN03081 313 YYEM----------------------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR----TGFPLDIVANTAL 366 (697)
T ss_pred HHHH----------------------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH----hCCCCCeeehHHH
Confidence 9999 8899999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFS 407 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (790)
+++|+++|++++|.++|++|.++|+++||+||.+|++.|+ .++|+++|+
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~-------------------------------~~~A~~lf~ 415 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR-------------------------------GTKAVEMFE 415 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC-------------------------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCHh
Q 003868 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVH-SGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NVDSV 485 (790)
Q Consensus 408 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~ 485 (790)
+|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999999999999986 5999999999999999999999999999999997 58999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 553 (790)
+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999999999999999875 6675 468999999999999999999999999886 7653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=318.39 Aligned_cols=596 Identities=14% Similarity=0.037 Sum_probs=348.3
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHH
Q 003868 25 PRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAR 101 (790)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 101 (790)
..++ +..|...+....+.+.. +...+..+...+.+.|+++.|...|+...+ .+...+..+...+.+.|++++|.
T Consensus 273 ~~~~--~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKN--YEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcC--HHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 3466 78888888877765422 222333445566778888888888887654 34556677777788888888888
Q ss_pred HHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHh
Q 003868 102 EMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKS 179 (790)
Q Consensus 102 ~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~ 179 (790)
..++.+... +.+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...++ ..+. ..+..+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~a~~~ 426 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI--ADLETAAQL 426 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH--HHHHHHHhh
Confidence 888776554 3456677888888888888888888888877643 1233445555555566666 5555 666665554
Q ss_pred CCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc
Q 003868 180 GTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256 (790)
Q Consensus 180 g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 256 (790)
... .......++..|.+. |++++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+.+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRS---------GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred CCc-chhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 432 233445566777777 888888888877653 3566778888888888888888888887643211
Q ss_pred ---chhhHHHHhhhhhHH---------HHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHH
Q 003868 257 ---VAWNALISGYVHREL---------KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVN 324 (790)
Q Consensus 257 ---~~~~~li~~~~~~~~---------~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 324 (790)
..+..+...+...|. ++... .+.+..++..+...+...|+.++|...+..+.. .+ +.+...+
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~ 570 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE----LN-PQEIEPA 570 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC-ccchhHH
Confidence 112222222221111 11111 122344455555555556666666666655554 22 2234455
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCC
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGY 398 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 398 (790)
..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|...|+++.+. +...|..+...|.+.|+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 5555666666666666666655542 24445566666666666666666666555432 33455555666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
+++|...|+++.... +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|+.
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655432 2234455555555666666666666666655543 33444555555666666666666666655
Q ss_pred CCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChh
Q 003868 479 MPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED 556 (790)
Q Consensus 479 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 556 (790)
+.. |+..++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|.++|+.+.+. .+++..
T Consensus 729 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 805 (899)
T TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAV 805 (899)
T ss_pred HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHH
Confidence 432 33345555555666666666666666665553 1223345555555566666666666666665542 234455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
.+..+...+.+.|+ .+|++.+++. ...| +..++..+...+...|++++|...++++++..|.++.++..++.+|.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 55666666666666 5566665554 2222 3345555555566666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHH
Q 003868 635 GRWDDAARVRKLMR 648 (790)
Q Consensus 635 g~~~~a~~~~~~m~ 648 (790)
|++++|.+++++|.
T Consensus 885 g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 GRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=312.90 Aligned_cols=612 Identities=12% Similarity=0.044 Sum_probs=489.3
Q ss_pred hhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CC-hHHHHHHHH
Q 003868 13 ANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PD-IVARTTLIA 89 (790)
Q Consensus 13 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~ 89 (790)
...+..+...+...++ ...|...++.+.+.... +..........+...|+++.|...|+.+.+ |+ ...+..+..
T Consensus 227 ~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 227 PAVLLALATILIEAGE--FEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3445555566666778 99999999999886543 333333344556678999999999998875 33 334445566
Q ss_pred HHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhh
Q 003868 90 AYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEK 167 (790)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~ 167 (790)
.+...|+++.|...|+..... +.+...+..+...+.+.|++++|+..++.+.... ..+...+..+...+...++ ..+
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 788899999999999987654 3456678889999999999999999999998654 3456678888888888888 777
Q ss_pred hhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC---CeeeHHHHHHHHHhCCChhHH
Q 003868 168 QCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAA 244 (790)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A 244 (790)
. ..+..+.+... .+...+..+...|... |+.++|.+.|+..... +...+..++..+.+.|++++|
T Consensus 383 ~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 383 A--EYLAKATELDP-ENAAARTQLGISKLSQ---------GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred H--HHHHHHHhcCC-CCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 7 77777766542 3556777788888888 9999999999877542 455677888999999999999
Q ss_pred HHHHHhcccC---CcchhhHHHHhhhhhHH-----HHHH--hCccC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 003868 245 REFLDGMSEN---VGVAWNALISGYVHREL-----KMLM--LRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEA 313 (790)
Q Consensus 245 ~~l~~~m~~~---~~~~~~~li~~~~~~~~-----~m~~--~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (790)
.++++.+... +...|+.+...+.+.+. .... ....| +...+..+...+...|+++.|.+.+..+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--- 527 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--- 527 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 9999998654 33456666666655544 1111 12233 345566777778888899999998888886
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHH
Q 003868 314 KPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWT 387 (790)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~ 387 (790)
.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+.+ .+...|.
T Consensus 528 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 528 -ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred -hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33 33677888888889999999999999888753 3556778888899999999999999988875 3557899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.++..|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999988753 3456677788888889999999999999888764 456778889999999999
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
++++|.++++.+.+ .+...|..+...+...|++++|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998864 4667788888999999999999999999998 457777888889999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 545 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
+.+ ..+.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|+++.
T Consensus 762 ~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 762 WLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 887 45667888999999999999999999999987 2 33467889999999999999 8899999999999999999
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.+..++.+|...|++++|.++++++.+.+.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999987554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=223.99 Aligned_cols=106 Identities=60% Similarity=1.119 Sum_probs=97.1
Q ss_pred ceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 003868 657 GCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTKFVLHDMESDQK--------EYALSTHSEKLAV 728 (790)
Q Consensus 657 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 728 (790)
|+||+++ |.|++||.+||+. ++..++...||.|++....|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999988 556677888999999999888877655 5688999999999
Q ss_pred HHhhcCCCCCCeEEEEecc-cccCCcchhhHhhhhhcCcEEEEecCCcccccC
Q 003868 729 AFGLMKLPGGATVRVLKNL-RICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 780 (790)
Q Consensus 729 ~~~~~~~~~~~~~~~~~nl-~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~ 780 (790)
|||++++ +|+||+ |||+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-22 Score=242.30 Aligned_cols=407 Identities=12% Similarity=0.046 Sum_probs=320.2
Q ss_pred CCHHHHHHHHccCCC--C-CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChh-
Q 003868 208 SLMGAARRVFDEMPE--R-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF- 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~- 283 (790)
|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+. .|+..
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------------------~p~~~~ 338 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------------------DPHSSN 338 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCccc
Confidence 999999999987753 3 6778999999999999999999999976321 22211
Q ss_pred --hH------------HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC
Q 003868 284 --TY------------TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE 349 (790)
Q Consensus 284 --t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 349 (790)
.+ ......+.+.|++++|...+..++. ..+ .+...+..+..+|...|++++|++.|++..+
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ----VDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1223456788999999999999997 443 3567788899999999999999999999875
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 350 --R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERN------------LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF 414 (790)
Q Consensus 350 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 414 (790)
| +...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+..
T Consensus 414 ~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 3 4556667777764 567899999998876432 2245667788899999999999999998853
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CH------
Q 003868 415 KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV----DS------ 484 (790)
Q Consensus 415 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~------ 484 (790)
+-+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.++.. +.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 2245567778888999999999999999998753 345555556666778899999999999988642 11
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 485 ---VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 485 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
..+..+...+...|+.++|+.+++. ..++...+..+...+...|++++|+..|+.+.+. .+.+...+..+
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~l 643 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGL 643 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 1123456778899999999999872 2344456777888999999999999999999863 34567889999
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc------chHhhHHHHHh
Q 003868 562 IDLLCRAGKFSEAKDVIDSLP-FKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG------TYVLLSNMYAN 633 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~ 633 (790)
+..|...|++++|++.++... ..| +..++..+..++...|++++|.+.++++++..|+++. .+..++.++..
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999873 344 4567778888899999999999999999998766543 56667999999
Q ss_pred cCChhHHHHHHHHHH-hCCCc
Q 003868 634 LGRWDDAARVRKLMR-DRGVK 653 (790)
Q Consensus 634 ~g~~~~a~~~~~~m~-~~g~~ 653 (790)
.|++++|.+.+++.. ..|+.
T Consensus 724 ~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 724 TGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCHHHHHHHHHHHHhhcCCC
Confidence 999999999999885 44454
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-21 Score=236.76 Aligned_cols=588 Identities=14% Similarity=0.078 Sum_probs=423.3
Q ss_pred chhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CChHHH-----
Q 003868 12 LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PDIVAR----- 84 (790)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~----- 84 (790)
+.+.+....+-+...++ .+.|.+.+.++.... +.++..+..+...+.+.|+.++|.+.+++..+ |+...+
T Consensus 27 ~~~~Ll~q~~~~~~~~~--~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHR--EDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHHHHHhhCC--hHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 33446666677777777 899999999888764 33677788888999999999999999999876 443222
Q ss_pred ------------HHHHHHHhcCCChHHHHHHHhhCCCC-CCCcch-HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCh-
Q 003868 85 ------------TTLIAAYSASDNVKLAREMFNKTPLK-MRDTVF-YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN- 149 (790)
Q Consensus 85 ------------~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 149 (790)
..+...+.+.|++++|.+.|+..... +++... ...........|+.++|++.|+++.+. .|+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCH
Confidence 22334678899999999999987765 233211 111111223458999999999999976 3543
Q ss_pred hhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCC----------------Cch---hHHHHHHHhhhccCCCCccCCCCC
Q 003868 150 FTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTG----------------LFT---SVLNALISVYVKCVSSPFVSSRSL 209 (790)
Q Consensus 150 ~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~----------------~~~---~~~~~li~~y~~~~~~~~~~~~g~ 209 (790)
..+..+-..+...++ .++. ..+..+.+.... ++. ..+...+..+-.. ..
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl--~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~---------~~ 250 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGF--AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG---------DS 250 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHH--HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc---------hH
Confidence 344555555656666 5565 666665443211 000 1111112222221 33
Q ss_pred HHHHHHHHccCCC--CCee-eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhH
Q 003868 210 MGAARRVFDEMPE--RDEL-SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTY 285 (790)
Q Consensus 210 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~ 285 (790)
.+.|...+..... .|.. ........+...|++++|+..|++.. ...| +...+
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL------------------------~~~P~~~~a~ 306 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV------------------------RANPKDSEAL 306 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HhCCCCHHHH
Confidence 4556666654321 1211 11233566788999999999999762 2345 56778
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCC-hhHH------------HHHHHHHHHCCCHHHHHHHHhhCCC---
Q 003868 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS-LPVN------------NALVTLYWKCGKVNEARDIFNQMPE--- 349 (790)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~f~~m~~--- 349 (790)
..+...+.+.|+.++|...++..++ ..+... ...+ ..+...+.+.|++++|...|++..+
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987 333221 1111 2335577899999999999999875
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CCH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK--------PCD 418 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~ 418 (790)
.+...+..+...|...|++++|++.|++..+. +...+..+...|. .++.++|+.+++.+...... ...
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 35667888899999999999999999998863 3456777777775 45789999988765432100 011
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALG 495 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 495 (790)
..+..+...+...|++++|.+.++++++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 234455667788999999999999999874 44567788899999999999999999998743 3 5556666666677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh---------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRI---------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
..|+.++|+..++++......++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHH
Confidence 8999999999998865432222221 233456678899999999999882 2456667788999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
+.|++++|++.|++. ...| +...+..+...+...|+.++|++.++++.+..|+++..+..++.++...|++++|.+++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999986 3445 57789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 003868 645 KLMRDRG 651 (790)
Q Consensus 645 ~~m~~~g 651 (790)
+++....
T Consensus 695 ~~al~~~ 701 (1157)
T PRK11447 695 NRLIPQA 701 (1157)
T ss_pred HHHhhhC
Confidence 9987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-19 Score=204.10 Aligned_cols=589 Identities=11% Similarity=-0.007 Sum_probs=393.5
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--CChHHHHHHHHHHhcCCChHHHH
Q 003868 24 DPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--PDIVARTTLIAAYSASDNVKLAR 101 (790)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 101 (790)
...|+ ...|...+.+..+..... ...+..|...|.+.|+.++|+..+++..+ |+-..+..++..+ ++.++|.
T Consensus 55 ~~~Gd--~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNND--EATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCC--HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 34477 888999999988876443 77888888999999999999999998876 4433343333333 8888999
Q ss_pred HHHhhCCCCCC-CcchHHHHHHH--------HHhCCCchHHHHHHHHhhhCCCCCChhhHHHH-HHHHhcchh-hhhhhh
Q 003868 102 EMFNKTPLKMR-DTVFYNAMITA--------YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSV-LSALALIVE-EEKQCM 170 (790)
Q Consensus 102 ~~~~~~~~~~~-~~~~~n~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~-~~~~~~ 170 (790)
.+++++....| +...+..+... |.+. ++|.+.++ .+.....|+..+.... .+.+...++ ..+.
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai-- 202 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD-- 202 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH--
Confidence 99988876633 34444444444 5555 44444444 3333344455555555 777877777 6677
Q ss_pred hHHHHHHHhCCCCchhHHHHHHHhhhc-cCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 003868 171 QMHCTVVKSGTGLFTSVLNALISVYVK-CVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLD 249 (790)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~~~li~~y~~-~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 249 (790)
.+...+.+.+... ..-...|-..|.. . ++ +.|..+++...+.|...+..++..|.+.|+.++|.++++
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l---------~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQ---------LD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhh---------CH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7888888887543 3435555557776 4 55 888888776555688889999999999999999999999
Q ss_pred hcccCCc-----chhhHHHHh------------------------------hhhhHH----HHHHhCccCChhhHHHHHH
Q 003868 250 GMSENVG-----VAWNALISG------------------------------YVHREL----KMLMLRIQLDEFTYTSVIS 290 (790)
Q Consensus 250 ~m~~~~~-----~~~~~li~~------------------------------~~~~~~----~m~~~~~~p~~~t~~~ll~ 290 (790)
+++..+. .+|--++.- +.+++. +.. ....|..... .++
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~r 348 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEML--EER 348 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHH--HHH
Confidence 9865311 122222211 111111 111 2344433321 222
Q ss_pred HHH--ccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHH
Q 003868 291 ACA--NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-R-----DLVSWNAILSAY 362 (790)
Q Consensus 291 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~ 362 (790)
... ..+...++.+.+..+.+ .. +-+.....-+.-...+.|+.++|.++|..... + +...-+.++..|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~----~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQ----QE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HhhccccCchhHHHHHHHHHHh----cC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 221 22445555555555554 21 12444455555566778888888888887654 1 223344666777
Q ss_pred HHcCC---HHHHHHH-------------------------HHHhcc---C--ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 363 VSAGL---IDEAKSL-------------------------FEAMRE---R--NLLSWTVMISGLAQNGYGEEGLKLFSQM 409 (790)
Q Consensus 363 ~~~g~---~~~A~~~-------------------------~~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (790)
.+.+. ..++..+ +..... . +...|..+...+.. ++.++|+..+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 77665 2333222 111111 1 45567777777776 7888888877777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHH-
Q 003868 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWN- 488 (790)
Q Consensus 410 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~- 488 (790)
... .|+......+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|.+.|+...+.++..++
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH
Confidence 654 466555444455556888899998888887554 344444566777888888998888888877653322222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 489 --AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 489 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
.+.......|++++|+..|++..+ ..|+...+..+..++.+.|++++|...++...+ ..+.+...+..+...+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 233333445889999999988887 567777888888888888999999998888875 23445677788888888
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 889999998888875 3445 56678888888888899999999999999999988888888888888888888888877
Q ss_pred HHHHhCCC
Q 003868 645 KLMRDRGV 652 (790)
Q Consensus 645 ~~m~~~g~ 652 (790)
++.-...+
T Consensus 735 ~r~~~~~~ 742 (987)
T PRK09782 735 GRRWTFSF 742 (987)
T ss_pred HHHhhcCc
Confidence 77654333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-18 Score=193.64 Aligned_cols=533 Identities=12% Similarity=0.029 Sum_probs=363.8
Q ss_pred hcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 003868 62 KSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFR 138 (790)
Q Consensus 62 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~ 138 (790)
..|++++|...|++..+ .+..++..|...|.+.|+.++|+..+++.....|+-..|..++..+ ++.++|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 34999999999999875 3467889999999999999999999998887644434444434333 88999999999
Q ss_pred HhhhCCCCCChh-hHHHHHHH--------HhcchhhhhhhhhHHHHHHHhCCCCchhHHHHH-HHhhhccCCCCccCCCC
Q 003868 139 DMRRDDVKPDNF-TFTSVLSA--------LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNAL-ISVYVKCVSSPFVSSRS 208 (790)
Q Consensus 139 ~m~~~g~~p~~~-t~~~ll~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~~~~~~~~~~g 208 (790)
++.+. .|+.. ++..+... +...+. +. .... .......|+..+.... ...|.+. |
T Consensus 133 ~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eq--Al--~AL~-lr~~~~~~~~~vL~L~~~rlY~~l---------~ 196 (987)
T PRK09782 133 ELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPV--AR--AQLN-DATFAASPEGKTLRTDLLQRAIYL---------K 196 (987)
T ss_pred HHHHh--CCCChhHHHHHHHHhhccchhhhhhHHH--HH--HHHH-HhhhCCCCCcHHHHHHHHHHHHHH---------h
Confidence 99976 45433 33333332 333322 22 2333 3333344456555555 8999999 9
Q ss_pred CHHHHHHHHccCCCC---CeeeHHHHHHHHHhC-CChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 209 LMGAARRVFDEMPER---DELSWTTMMTGYVKN-DYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 209 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
++++|+.++.++.+. +..-+..|-..|.++ ++ +++..+++...+. |...
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~--------------------------d~~l 249 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFT--------------------------DPQS 249 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhccc--------------------------CHHH
Confidence 999999999988754 333456666778873 66 8888886643323 3444
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC----------------------------ChhHHHHHHHHHHHCCC
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF----------------------------SLPVNNALVTLYWKCGK 336 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~li~~~~~~g~ 336 (790)
...+...+.+.|+.++|.+++..+...... .+.+ -....-.+++.+.+.++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTT-DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ 328 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH
Confidence 444455555555555555444443221000 0000 01112233667777777
Q ss_pred HHHHHHHHhhCCC-------------------------------C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---
Q 003868 337 VNEARDIFNQMPE-------------------------------R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER--- 381 (790)
Q Consensus 337 ~~~A~~~f~~m~~-------------------------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 381 (790)
++.+.++.+.-+. | +....--+---..+.|+.++|..+|+.....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 329 YDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred HHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 7766666442221 0 1111112222356778899999999888762
Q ss_pred ---ChhHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHH
Q 003868 382 ---NLLSWTVMISGLAQNGY---GEEGLKL----------------------FSQMRLE-GF-KP--CDYAFAGAITSCA 429 (790)
Q Consensus 382 ---~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~t~~~ll~~~~ 429 (790)
+...-+.++..|.+.+. ..+++.+ ....... +. ++ +...+..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 12244477777777765 3333333 1111111 12 23 4555666665555
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
. +..++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|
T Consensus 489 ~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5 78888999888777654 4544444455556789999999999997654 45556777788899999999999999
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 508 EQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
++..+. .|+.. .+..+.......|++++|...+++..+ ..|+...|..+..++.+.|++++|++.+++. ...|
T Consensus 566 ~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 566 QQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999984 45553 333344455567999999999999985 4678889999999999999999999999986 4556
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 -SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...+..+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++..+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4567888888999999999999999999999999999999999999999999999999999975
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-19 Score=179.07 Aligned_cols=385 Identities=16% Similarity=0.159 Sum_probs=297.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHH
Q 003868 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQV 304 (790)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 304 (790)
.+|..+...+-..|++++|+.+++.|. .++| ....|..+..++...|+.+.|.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~ai------------------------el~p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAI------------------------ELKPKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHH------------------------hcCchhhHHHhhHHHHHHhcCCCcccHHH
Confidence 345555566666666666666666552 2223 234455555666666666666666
Q ss_pred HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q 003868 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RD-LVSWNAILSAYVSAGLIDEAKSLFEAMRER 381 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 381 (790)
+...++ .++. ...+.+.+.......|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+.-|++...-
T Consensus 173 ~~~alq----lnP~-l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 173 FFEALQ----LNPD-LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHh----cCcc-hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 666554 2211 122223344444556666666666655443 32 457888888888888888888888888775
Q ss_pred Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 382 NL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 382 ~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
|+ .+|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|-..|.++.|+..+++.++.. +.-...|+
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 54 57888888898999999999999888764 454 5567777777889999999999999998864 33467899
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccC
Q 003868 458 ALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAG 533 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 533 (790)
.|..++-..|++.+|.+.|++... .-..+.+.|...|...|.+++|..+|.+..+ +.|.. ..++.|...|-+.|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 999999999999999999998764 3566888999999999999999999999998 78887 47899999999999
Q ss_pred CHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 003868 534 LVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
++++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...+...|++.+|+..|
T Consensus 403 nl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999988 56787 478999999999999999999999876 667754 57899999999999999999999
Q ss_pred HHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 611 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+.++.+.|+.+.+|..|+..+.-..+|.+-.+.++++
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999988888887755444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=174.37 Aligned_cols=356 Identities=14% Similarity=0.186 Sum_probs=307.5
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHH-H
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWN-A 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~-~ 357 (790)
-..+|+.+...+-..|+++.|...+..+++ ..+. .+..|..+..++...|+.+.|...|.+..+ |+..... .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie----l~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIE----LKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHh----cCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 457899999999999999999999999997 4433 577899999999999999999999988775 5444333 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGA 433 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 433 (790)
+...+...|+.++|...+.+..+-++ ++|..|...+-.+|+...|+..|++... +.|+. ..|-.+...+...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 44455668999999999988877543 7899999999999999999999999887 45653 467788888888899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD-SVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+++|...+..+.... +....++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|...|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999998888877653 34566777788889999999999999999875 33 568999999999999999999999999
Q ss_pred HHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 003868 511 LKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA 587 (790)
Q Consensus 511 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 587 (790)
.. +.|+. ...+.|..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|+.
T Consensus 347 L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 98 67877 4888999999999999999999999875 3454 567899999999999999999999886 788875
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 -PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++.+...|...|+.+.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|..-++...+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999998875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-17 Score=185.52 Aligned_cols=388 Identities=14% Similarity=0.059 Sum_probs=290.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHH
Q 003868 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 307 (790)
+......|.+.|++++|+..|++. ..+.|+...|..+..++...|+++.|...+..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~a------------------------l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKA------------------------IECKPDPVYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------------------------HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456677889999999999999965 45668888899999999999999999999999
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---
Q 003868 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--- 381 (790)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 381 (790)
+++ ..+ .+...+..+..+|...|++++|..-|..... .+......++..+.......++...++.-...
T Consensus 186 al~----l~p-~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 186 ALE----LDP-DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHH----cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 987 443 3577888899999999999999887755432 11111111111111111112222222111110
Q ss_pred --------------------------Ch---hHHHHHHHHH---HhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHH
Q 003868 382 --------------------------NL---LSWTVMISGL---AQNGYGEEGLKLFSQMRLEG-FKP-CDYAFAGAITS 427 (790)
Q Consensus 382 --------------------------~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~ 427 (790)
+. ..+..+...+ ...+++++|++.|++....+ ..| +...+..+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 00 0111111111 22467899999999998765 234 34567777777
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAI 504 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 504 (790)
+...|++++|...++.+++.. +.....+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999999998863 33466788899999999999999999997754 46788999999999999999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003868 505 ELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P 582 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 582 (790)
..|++..+ +.|+. ..+..+..++...|++++|...|+...+ ..+.+...|..+..+|...|++++|.+.|++. .
T Consensus 420 ~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 420 KDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 99999998 56765 5677778888999999999999999886 34456788999999999999999999999885 3
Q ss_pred CCCCH-H-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 583 FKPSA-P-------IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 583 ~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.|+. . .++..+..+...|++++|+..++++++++|++..++..++.+|...|++++|.+++++..+
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33321 1 1222222334469999999999999999999988999999999999999999999999865
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-18 Score=183.54 Aligned_cols=294 Identities=14% Similarity=0.121 Sum_probs=192.6
Q ss_pred HHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC-------hhHHHHHHHHHHhcCCh
Q 003868 330 LYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-------LLSWTVMISGLAQNGYG 399 (790)
Q Consensus 330 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 399 (790)
.+...|++++|...|.++.+ | +..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 44556666666666666653 2 23355556666666666666655555554321 12344555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 003868 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM 479 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 479 (790)
++|+.+|+++.+.. +++..++..+...+.+.|++++|.+.+..+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22333444444444444444444444444443321110000
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hh
Q 003868 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--ED 556 (790)
Q Consensus 480 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 556 (790)
....|..+...+.+.|++++|+..|+++.+. .|+. ..+..+...+.+.|++++|.++|+++.+. .|+ ..
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 250 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSE 250 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHH
Confidence 0123455666777888888888888888773 4543 46667777888888888888888888753 233 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh--
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN-- 633 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 633 (790)
.+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 6778888899999999999988886 4467777778888999999999999999999999998875 55555655553
Q ss_pred -cCChhHHHHHHHHHHhCCCccCCc
Q 003868 634 -LGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 634 -~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.|+.+++..++++|.+++++++|.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 569999999999999999999987
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-17 Score=175.87 Aligned_cols=290 Identities=17% Similarity=0.137 Sum_probs=219.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC-C------hhHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER-D------LVSWNA 357 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~------~~~~~~ 357 (790)
.-.....+...|+++.|...+..+++ .++ .+..++..+...|...|++++|..+++.+... + ...+..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLK----VDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh----cCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 33334456678999999999999997 443 35678999999999999999999999988752 1 246788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..+.....
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 179 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------- 179 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------
Confidence 89999999999999999999987 35678999999999999999999999999876533322100
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|+++|+++.
T Consensus 180 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 180 ------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01123344455555555555555555432 234466677788888888888888888888
Q ss_pred HcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 003868 512 KEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP 588 (790)
Q Consensus 512 ~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 588 (790)
+. .|+ ..++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..
T Consensus 242 ~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 242 EQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 74 344 346777888888888999998888888753 566666788888899999999999988865 5568888
Q ss_pred HHHHHHHHHHH---hCCHHHHHHHHHHHHh
Q 003868 589 IWEALLAGCRI---HGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 589 ~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 615 (790)
.++.++..+.. +|+.+++...++++++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88888877664 5588888888887775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-16 Score=175.68 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=266.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 357 (790)
+..-...++..+.+.|+++.|..++...+. ..+. +......++......|+++.|...|+++.. | +...|..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~----~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~ 115 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVL----TAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLL 115 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHH----hCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 344566778888999999999999999987 4444 345556666777789999999999999875 3 5567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...+.+.|++++|...|++..+. +...|..++..+.+.|++++|...++.+......+.. .+.. +..+...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~ 193 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRL 193 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCH
Confidence 899999999999999999998763 4568899999999999999999999988765433222 2322 3347889999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH----HHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR----AIELY 507 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~ 507 (790)
++|...+..+.+....++......+...+.+.|+.++|...|++... .+...+..+...+...|++++ |+..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999988765334445556667889999999999999998764 367788889999999999986 89999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 508 EQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
++..+ ..|+. ..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 274 ~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 274 RHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99998 56765 47888889999999999999999998863 3344667788899999999999999999887 3556
Q ss_pred CHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 586 SAPIW-EALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 586 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 65444 3456678899999999999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-15 Score=172.91 Aligned_cols=389 Identities=10% Similarity=-0.001 Sum_probs=284.8
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHH
Q 003868 227 SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHA 306 (790)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 306 (790)
--.-.+......|+.++|++++.+. .. .-+.+...+..+..++...|++++|...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~----------------------~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~ 73 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRY----------------------RV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQ 73 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------------------Hh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445566777889999999888875 11 112344467888888889999999999999
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC--
Q 003868 307 YLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER-- 381 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 381 (790)
..+. ..+ .+......+..++...|+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+.
T Consensus 74 ~al~----~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 74 KALS----LEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHH----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9886 432 2466677888889999999999999988764 3 444 888888889999999999999988763
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH-----ccCCh---HHHHHHHHHHHH
Q 003868 382 -NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY------AFAGAITSCA-----GLGAL---ENGRQLHAQLVH 446 (790)
Q Consensus 382 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~g~~---~~a~~i~~~~~~ 446 (790)
+...+..+...+...|..++|+..++.... .|+.. ....++.... ..+.+ ++|.+.++.+.+
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 345666778888888888999988876653 33320 1111222221 11223 667778888776
Q ss_pred h-CCCCchh-HH-HH---HHHHHHhcCCHHHHHHHHhcCCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 447 S-GYDSSLS-AG-NA---LITMYARCGVVEAANCVFNTMPNVD---SV-SWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 447 ~-g~~~~~~-~~-~~---li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
. ...|+.. .+ .+ .+.++...|+.++|.+.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~ 302 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--P 302 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--C
Confidence 4 2222221 11 11 1234456799999999999987532 11 1222567899999999999999998763 3
Q ss_pred CCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHH
Q 003868 517 PDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYG----------IPPG---EDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 517 p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
|.. .....+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 332 3456667788999999999999998876310 1122 234567788899999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 579 DSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 579 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++ ...| +...+..+...+...|+.++|++.++++++++|++...+..++..+...|+|++|.++++.+.+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 986 3334 5678999999999999999999999999999999999999999999999999999999999976
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-15 Score=166.40 Aligned_cols=343 Identities=15% Similarity=0.031 Sum_probs=270.3
Q ss_pred CCHHHHHHHHccCCCC------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-
Q 003868 208 SLMGAARRVFDEMPER------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL- 280 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p- 280 (790)
.+++.-.-+|..-++. +..-...++..+.+.|++++|..+++... ...|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l------------------------~~~p~ 74 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV------------------------LTAKN 74 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH------------------------HhCCC
Confidence 5555555666655542 34455667888999999999999999752 2223
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 357 (790)
+...+..+..++...|+++.|...++.++. ..+. +...+..+...+.+.|++++|...|++..+ | +...|..
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~ 149 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFAL 149 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334455555667789999999999999987 4433 567888899999999999999999999875 3 5668889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
+...+.+.|++++|...++.+.. + +...+..+ ..+.+.|++++|...++.+......++......+..++.+.|++
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 99999999999999999987754 3 33344333 34788999999999999988764444555556667788899999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA----ANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
++|...+..+.+.. +.+...+..+...|.+.|+.++ |...|++..+ .+...+..+...+.+.|++++|+..+
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999875 5567788889999999999986 7888988764 36778999999999999999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 508 EQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 508 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
++..+ ..|+. ..+..+..++...|++++|...|+.+.+. .|+. ..+..+..++...|+.++|.+.|++. ...
T Consensus 308 ~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 308 QQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998 56765 45667788899999999999999998853 4543 33445677899999999999999886 334
Q ss_pred CC
Q 003868 585 PS 586 (790)
Q Consensus 585 p~ 586 (790)
|+
T Consensus 383 P~ 384 (656)
T PRK15174 383 AS 384 (656)
T ss_pred hh
Confidence 43
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-14 Score=167.41 Aligned_cols=383 Identities=9% Similarity=0.031 Sum_probs=291.6
Q ss_pred CCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCC-hh
Q 003868 208 SLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD-EF 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~-~~ 283 (790)
|+.++|+.++..... .+...+..+...+...|++++|..+|++. ....|+ ..
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~a------------------------l~~~P~~~~ 84 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKA------------------------LSLEPQNDD 84 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHhCCCCHH
Confidence 999999999988764 24445899999999999999999999975 223344 45
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILS 360 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 360 (790)
.+..+...+...|+.++|...++.+++ ..+ .+.. +..+..++...|+.++|...++++.+ | +...+..+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~----~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVS----GAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 566777788899999999999999987 433 3455 88899999999999999999999875 3 4556777888
Q ss_pred HHHHcCCHHHHHHHHHHhccCChh--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHH-HHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRERNLL--------SWTVMISGLA-----QNGYG---EEGLKLFSQMRLE-GFKPCDY-AFA 422 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~ 422 (790)
.+...|..++|++.++.... ++. ....++.... ..+++ ++|+..++.+... ...|+.. .+.
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 88999999999999998776 211 1222222222 22234 7789999988864 2233321 111
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HhHHHHHH
Q 003868 423 ----GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD-------SVSWNAMI 491 (790)
Q Consensus 423 ----~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li 491 (790)
..+.++...|++++|+..++.+.+.+.+........+...|...|++++|+..|+++.+.+ ...+..+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 1134456779999999999999987632122223336789999999999999999875422 23456677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 492 AALGQHGNGARAIELYEQMLKEG-----------ILPDR---ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
.++.+.|++++|+.+++++.+.. -.|+. ..+..+...+...|++++|+++++++.. ..+.+...
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l 395 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGL 395 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 78899999999999999998741 11232 2345666788899999999999999986 45666788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999986 45665 5677777778899999999999999999999999643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=153.12 Aligned_cols=534 Identities=13% Similarity=0.103 Sum_probs=372.3
Q ss_pred hhHHHHHhhhCCC--CChHHHHHHHHHH--hcCCChHHHHHHHhhCCCC----CCCcchHHHHHHHHHhCCCchHHHHHH
Q 003868 66 LVYARTLFDEIPQ--PDIVARTTLIAAY--SASDNVKLAREMFNKTPLK----MRDTVFYNAMITAYSHNSNGHAAIELF 137 (790)
Q Consensus 66 ~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~----~~~~~~~n~li~~~~~~g~~~~A~~~~ 137 (790)
++.|.+.|....+ |+-+. .-|..++ ...|++..|..+|...... ++|+.. .+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 5788888877765 33222 1233333 3567899999999873322 445432 2224567889999999999
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhc---chh--hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHH
Q 003868 138 RDMRRDDVKPDNFTFTSVLSALAL---IVE--EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGA 212 (790)
Q Consensus 138 ~~m~~~g~~p~~~t~~~ll~~~~~---~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~ 212 (790)
.+..+- .|+.+.-...|.-+.. ..+ ..+. ++....-+. -..++.+.+.|-+.|.-. |+++.
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~--~ll~~ay~~-n~~nP~~l~~LAn~fyfK---------~dy~~ 288 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGV--QLLQRAYKE-NNENPVALNHLANHFYFK---------KDYER 288 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHH--HHHHHHHhh-cCCCcHHHHHHHHHHhhc---------ccHHH
Confidence 998864 3422221111111111 001 1121 222222221 246778888888887777 99999
Q ss_pred HHHHHccCCCCC------eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhH-
Q 003868 213 ARRVFDEMPERD------ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY- 285 (790)
Q Consensus 213 A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~- 285 (790)
++.+...+...+ ..+|--+.++|-..|++++|...|.+- .+..||.+++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s------------------------~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES------------------------LKADNDNFVLP 344 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH------------------------HccCCCCcccc
Confidence 998887665432 345788999999999999999999854 5556666554
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCC----CHHHHHHHHhhCCCC---ChhHHHH
Q 003868 286 -TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCG----KVNEARDIFNQMPER---DLVSWNA 357 (790)
Q Consensus 286 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~~---~~~~~~~ 357 (790)
.-+.+.+...|+++.+...|+.+.+ .. +.+..+...|...|...+ ..+.|..+.....++ |...|-.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k----~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLK----QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHH----hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4567788999999999999999987 33 346677777888887775 567788888777664 5567776
Q ss_pred HHHHHHHcCCHHHHHHHHHHhc--------cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH-----HHH
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMR--------ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE---GFKPCD-----YAF 421 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~ 421 (790)
+...|-+..-+. ++.+|.... ...+...|.+...+...|++++|...|.+.... ...+|. .|.
T Consensus 420 laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 666665544433 355554443 245678999999999999999999999988764 223333 222
Q ss_pred H-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc
Q 003868 422 A-GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQH 497 (790)
Q Consensus 422 ~-~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 497 (790)
. .+....-..++.+.|.+.+..+.+.. +.-+..|--|..+.-..+...+|...++.... .++..|+.+...+...
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 2 23344456679999999999998863 22222333333233333567788888887654 5777888888888888
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHc------------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 498 GNGARAIELYEQMLKEG-ILPDRITFLTVLSACNH------------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..+..|.+-|+...+.- ..+|..+..+|.+.|.. .+..++|+++|.++.+ ..+-|...-+-+.-.
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIV 655 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhh
Confidence 88888988777766532 33677777777776642 3457889999998886 456677778888899
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCCcchHhhHHHHHhcCChhHH
Q 003868 565 LCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL--MPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
++..|++.+|.++|.+.. ......+|..+...|...|++..|+++|+..+.. ..+++.....|+.++.+.|+|.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999998872 2235568999999999999999999999998876 344677888999999999999999
Q ss_pred HHHHHHHHh
Q 003868 641 ARVRKLMRD 649 (790)
Q Consensus 641 ~~~~~~m~~ 649 (790)
.+.......
T Consensus 736 k~~ll~a~~ 744 (1018)
T KOG2002|consen 736 KEALLKARH 744 (1018)
T ss_pred HHHHHHHHH
Confidence 998887765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-14 Score=162.44 Aligned_cols=418 Identities=14% Similarity=-0.014 Sum_probs=236.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCC
Q 003868 53 INRLIDIYCKSLKLVYARTLFDEIPQ--PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSN 129 (790)
Q Consensus 53 ~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~ 129 (790)
+..+-+.+.+.|+++.|...|++... |+...|..+-.+|.+.|++++|.+.++..... +.+...|..+-.+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34556677888999999999998765 78888888889999999999999998876654 3456678888899999999
Q ss_pred chHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCC
Q 003868 130 GHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSL 209 (790)
Q Consensus 130 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~ 209 (790)
+++|+..|......+-..+. ....++...... .+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~---~a------------------------------------------ 243 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNE-QSAQAVERLLKK---FA------------------------------------------ 243 (615)
T ss_pred HHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHH---HH------------------------------------------
Confidence 99999888766543211111 111111111000 00
Q ss_pred HHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhH-HHH
Q 003868 210 MGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTY-TSV 288 (790)
Q Consensus 210 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~-~~l 288 (790)
...+...++.-+ .+..++..+.. |........+..-+..-.+.+ ... ...... ...
T Consensus 244 ~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~---~~~~~~l~~~ 300 (615)
T TIGR00990 244 ESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD------------------EET---GNGQLQLGLK 300 (615)
T ss_pred HHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc------------------ccc---ccchHHHHHH
Confidence 001111111100 01111111111 111111111111010000000 000 000000 000
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHH
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYV 363 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~ 363 (790)
..-....+++++|.+.++..+. .+ .+.....++.+...+...|++++|...|+...+ | +..+|..+...+.
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~----~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALD----LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 0000222344455555555544 21 112334455555566666666666666665543 2 2335566666666
Q ss_pred HcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003868 364 SAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQL 440 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 440 (790)
..|++++|...|++..+. +...|..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 667777777666665542 34566667777777777777777777776642 22345555666667777777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC--H------hHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD--S------VSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~------~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+..+++. .+.+..+++.+...|...|++++|.+.|++... |+ . ..++..+..+...|++++|++++++.
T Consensus 456 ~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777664 244566777777777778888888777776543 11 1 11222233344468888999988888
Q ss_pred HHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 511 LKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 511 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
.+ +.|+. ..+..+...+...|++++|..+|+...+
T Consensus 535 l~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 535 LI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred Hh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77 45655 4677788888889999999988888764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-13 Score=150.58 Aligned_cols=410 Identities=9% Similarity=0.002 Sum_probs=298.6
Q ss_pred CCHHHHHHHHccCCCCCee---eHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 208 SLMGAARRVFDEMPERDEL---SWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka----------------------~----~p~n~~ 101 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY----------------------Q----SSMNIS 101 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh----------------------c----cCCCCC
Confidence 9999999999988754333 2348889999999999999999976 2 443333
Q ss_pred HH-H--HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC--ChhHHHHHH
Q 003868 285 YT-S--VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER--DLVSWNAIL 359 (790)
Q Consensus 285 ~~-~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li 359 (790)
+. . +...+...|+++.|.++++.+++ ..+. +..++..++..|...++.++|++.++++... +...+-.++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~----~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~la 176 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK----KDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLS 176 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHH
Confidence 32 2 34567788999999999999997 5544 4677788899999999999999999999864 434443333
Q ss_pred HHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH--
Q 003868 360 SAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF------AGAITSC-- 428 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~-- 428 (790)
..+...++..+|++.++++.+. +...+..+...+.+.|-...|+++..+-... +.+...-. ...++--
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence 3344456666699999999874 4567788889999999999998777653321 11211111 1111100
Q ss_pred ---HccCCh---HHHHHHHHHHHHh-C-CCCchhH-HHH---HHHHHHhcCCHHHHHHHHhcCCCC----CHhHHHHHHH
Q 003868 429 ---AGLGAL---ENGRQLHAQLVHS-G-YDSSLSA-GNA---LITMYARCGVVEAANCVFNTMPNV----DSVSWNAMIA 492 (790)
Q Consensus 429 ---~~~g~~---~~a~~i~~~~~~~-g-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~ 492 (790)
....++ +.|..-++.+... + .++.... ..+ .+-++.+.|+..++.+.|+.+... ...+-.++.+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 011222 3344444444432 2 2222222 223 344667889999999999999842 3345567889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCC----------CCCCh--
Q 003868 493 ALGQHGNGARAIELYEQMLKEGI-----LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG----------IPPGE-- 555 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~~-- 555 (790)
+|...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 99999999999999999976431 12223357889999999999999999999986211 01332
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 556 -DHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 556 -~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
..+..++..+...|++.+|++.++++ .. +-|..++..+...+...|...+|++.++.+..++|++..+...++..+.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 34455777889999999999999998 23 3478899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|+|++|.++.+...+
T Consensus 496 ~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 496 ALQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 99999999999988765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-13 Score=144.24 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 003868 500 GARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
.++|+++|.+.++. .| |...-+.+.-.++..|++.+|..+|.+..+. ......+|-.+.+.|..+|++-.|+++|
T Consensus 628 ~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 44455555544442 22 2234444444445555555555555555442 1223334444555555555555555555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH-------------------HHHhcC
Q 003868 579 DSL----PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN-------------------MYANLG 635 (790)
Q Consensus 579 ~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~-------------------~~~~~g 635 (790)
+.. .-+.+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++- +....+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 432 112244444555555555555555555555555555554433333322 223345
Q ss_pred ChhHHHHHHHHHHhCCCc
Q 003868 636 RWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 636 ~~~~a~~~~~~m~~~g~~ 653 (790)
..+.|.++|.+|...+-+
T Consensus 784 ~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 667788888888765544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-12 Score=128.35 Aligned_cols=441 Identities=13% Similarity=0.068 Sum_probs=269.5
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHH--HHHhcCChhHH-HHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHH
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLID--IYCKSLKLVYA-RTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMF 104 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~~~A-~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 104 (790)
+..+.-+++.|.+.|++.++..--.|+. .|.+..++.-| ++-|-.|.. .+..+| +.|++.+ -+|
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd--L~~ 200 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD--LLF 200 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH--HHH
Confidence 6678889999999999988877666654 34444444333 344445543 444455 4566555 667
Q ss_pred hhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCc
Q 003868 105 NKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLF 184 (790)
Q Consensus 105 ~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 184 (790)
+..| .+..+|..||.|+|+-...+.|.+++++-++...+.+..+|+.+|.+-+-. .++ .+...|+.....||
T Consensus 201 E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---~~K--~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 201 ETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---VGK--KLVAEMISQKMTPN 272 (625)
T ss_pred hhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---ccH--HHHHHHHHhhcCCc
Confidence 7776 477899999999999999999999999999998999999999999875432 334 77778888888888
Q ss_pred hhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHH
Q 003868 185 TSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALIS 264 (790)
Q Consensus 185 ~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~ 264 (790)
.+++|+++.+.++. |.++.|++. |.+++.+|
T Consensus 273 l~TfNalL~c~akf---------g~F~~ar~a---------------------------alqil~Em------------- 303 (625)
T KOG4422|consen 273 LFTFNALLSCAAKF---------GKFEDARKA---------------------------ALQILGEM------------- 303 (625)
T ss_pred hHhHHHHHHHHHHh---------cchHHHHHH---------------------------HHHHHHHH-------------
Confidence 88888888888888 777777654 45666666
Q ss_pred hhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHH-HHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHH
Q 003868 265 GYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRL-GKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNE 339 (790)
Q Consensus 265 ~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (790)
++.|+.|...+|..+|..+.+.++..+ +..+...+...- ..+-.+.|...+...++.+....+.+.
T Consensus 304 ---------KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 304 ---------KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred ---------HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 778888888888888887777776644 333333333211 111122234444444555555555555
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003868 340 ARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY 419 (790)
Q Consensus 340 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 419 (790)
|.++-.-....+.. ...|.. + ....-|..+....++....+.-+..|+.|.-.-+-|+..
T Consensus 375 A~~v~~ll~tg~N~---------~~ig~~------~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNW---------KFIGPD------Q-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHcCCch---------hhcChH------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 55443332211000 000000 0 011234445556666666888888888888877888888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-C
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-G 498 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g 498 (790)
+...++.+....+.++-...++..++..|.........-+...+++.. ..|+...-..+-..+++. -
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH
Confidence 888899988888888888888888888775554444333333333322 012111111111111110 0
Q ss_pred ChHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH---HHHHHHHhcCChHHH
Q 003868 499 NGAR-AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA---RFIDLLCRAGKFSEA 574 (790)
Q Consensus 499 ~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A 574 (790)
++.+ ....-.+|.+.... ....+.++..+.+.|..++|.++|..+.+...-.|.....+ -+++.-.+......|
T Consensus 503 d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 12222344443333 33445555556677788888877777744433334333444 444555566677777
Q ss_pred HHHHHhC
Q 003868 575 KDVIDSL 581 (790)
Q Consensus 575 ~~~~~~~ 581 (790)
...++-|
T Consensus 581 ~~~lQ~a 587 (625)
T KOG4422|consen 581 IEVLQLA 587 (625)
T ss_pred HHHHHHH
Confidence 7777665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-12 Score=147.63 Aligned_cols=222 Identities=9% Similarity=0.062 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003868 399 GEEGLKLFSQMRLE-GFKPCD-Y----AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472 (790)
Q Consensus 399 ~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 472 (790)
.+.|+.-++.+... +-.|.. . ...--+-++...++..++++.++.+...+.+....+-.++.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 35556666665542 222322 1 12234556777888888888888888888776777888888899988999999
Q ss_pred HHHHhcCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCh--h-hHHHHHHHH
Q 003868 473 NCVFNTMPNV---------DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-----------LPDR--I-TFLTVLSAC 529 (790)
Q Consensus 473 ~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-t~~~ll~a~ 529 (790)
..+|+.+... +......|.-+|...+++++|..+++++.+.-- .||. . .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 8888876431 233346778888899999999999999987311 1222 2 344456678
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 607 (790)
...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. .+.|+ ..+......+....+++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 899999999999999976 45668899999999999999999999999776 34564 456667788888899999999
Q ss_pred HHHHHHHhcCCCCCc
Q 003868 608 QAAEQLFQLMPHHAG 622 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~ 622 (790)
.+.+++.+..|+++.
T Consensus 505 ~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhCCCchh
Confidence 999999999999974
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=132.93 Aligned_cols=202 Identities=13% Similarity=0.180 Sum_probs=157.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
..|++++|.+.++++....-......|| +.-.+-+.|++++|+..|-++.. .++...-.+.+.|-...++..|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3456666666666665543222222333 33346667888888888776543 4666666777888888899999999
Q ss_pred HHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 507 YEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 507 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
+.+... +.|+. .....|...|-+.|+-..|.+++..--+ -++-+.++...|..-|....-+++|..+|++. -++
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 977766 56654 5777888899999999999998776443 45668899999999999999999999999987 478
Q ss_pred CCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 585 PSAPIWEALLAGC-RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 585 p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
|+..-|..++..| ++.|++.+|..+|+......|.+....-.|..++...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999887 677999999999999999999999999999998888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-11 Score=120.72 Aligned_cols=320 Identities=17% Similarity=0.170 Sum_probs=203.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh---hhhhhhhHHHHHHHhCCCCchhHHHH
Q 003868 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE---EEKQCMQMHCTVVKSGTGLFTSVLNA 190 (790)
Q Consensus 114 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ 190 (790)
+++=|.|+.. ...|...++.-+|+.|+..|+..+...-..|++..+-... ..+. .+.+-.+.+.|-.. ..+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E-~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE-WEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh-HHHHhhcccccccc-ccc---
Confidence 4556666654 4568899999999999999988887766666654332222 1110 01111222222211 111
Q ss_pred HHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhH
Q 003868 191 LISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRE 270 (790)
Q Consensus 191 li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~ 270 (790)
+.+=+-|. ++-+...+...++..||.|+++--..+.|.+++++-
T Consensus 190 ----------------WK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~------------------- 233 (625)
T KOG4422|consen 190 ----------------WKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH------------------- 233 (625)
T ss_pred ----------------cccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-------------------
Confidence 12233344 444455567789999999999999999999999987
Q ss_pred HHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh----
Q 003868 271 LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ---- 346 (790)
Q Consensus 271 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---- 346 (790)
.....+.+..+|+.+|.+-.-+ .++++..+|.. ....||..++|+++.+..+.|+++.|++.+-+
T Consensus 234 ---~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis----qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~E 302 (625)
T KOG4422|consen 234 ---RAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS----QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGE 302 (625)
T ss_pred ---HHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH----hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6667778888888888775433 33677777877 77778888888888888888877766544332
Q ss_pred CC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC--
Q 003868 347 MP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL----EGFKP-- 416 (790)
Q Consensus 347 m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-- 416 (790)
|. +|...+|..+|..+++.++.. ..|..++.+.+. ..++|
T Consensus 303 mKeiGVePsLsSyh~iik~f~re~dp~------------------------------k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 303 MKEIGVEPSLSSYHLIIKNFKRESDPQ------------------------------KVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HHHhCCCcchhhHHHHHHHhcccCCch------------------------------hhhHHHHHHHHHhhccCcccCCC
Confidence 22 245555555555544444421 223333333332 22222
Q ss_pred --CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CC
Q 003868 417 --CDYAFAGAITSCAGLGALENGRQLHAQLVHS----GYDSS---LSAGNALITMYARCGVVEAANCVFNTMPN----VD 483 (790)
Q Consensus 417 --~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~ 483 (790)
|...|...+..|.+..+.+.|.+++..+... -+.++ ..-|..+....+....++.-...|+.|.. |+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 4556778888888888888888887766532 11222 23455667777777788888888887764 56
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
..+-..++.+....|.++-.-++|..|+..|-.
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 666666777777777777777777777766533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-10 Score=114.31 Aligned_cols=605 Identities=13% Similarity=0.088 Sum_probs=350.6
Q ss_pred hhccchhHHHHHHhhcCCC-----CCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---C
Q 003868 8 YIRTLANRYASQLQLCDPR-----NPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---P 79 (790)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~ 79 (790)
+..+++..|..-|...-+. ++ ...|+.++....+.+.. ++.-+-.-.+.--..|.+..|+.+...-.+ .
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~D--ikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr 317 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLED--IKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR 317 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHH--HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc
Confidence 3444555555555554332 23 44555566655555432 333333333333445667777766655443 2
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
+..+|--- ++....+.|..+....... +.++..|---+. -..+...=.++++..++. ++-+...|-.
T Consensus 318 SeDvWLea----iRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKa---- 385 (913)
T KOG0495|consen 318 SEDVWLEA----IRLHPPDVAKTVVANAVRFLPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKA---- 385 (913)
T ss_pred hHHHHHHH----HhcCChHHHHHHHHHHHHhCCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHH----
Confidence 33333211 2233344455544433332 122333321111 111222223444444442 2222333333
Q ss_pred Hhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHH
Q 003868 159 LALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTG 234 (790)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 234 (790)
...... ..++ .+....++.- +.+.. |.-+|++. .-++.|.++++...+ .+...|.+-...
T Consensus 386 AVelE~~~dar--ilL~rAvecc-p~s~d----LwlAlarL---------etYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 386 AVELEEPEDAR--ILLERAVECC-PQSMD----LWLALARL---------ETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred HHhccChHHHH--HHHHHHHHhc-cchHH----HHHHHHHH---------HHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 233333 3343 4444444432 22223 33445555 778888888876543 477888887777
Q ss_pred HHhCCChhHHHHHHHhcccC------------------------CcchhhHHHHhhhhhHHHHHHhCccC--ChhhHHHH
Q 003868 235 YVKNDYLDAAREFLDGMSEN------------------------VGVAWNALISGYVHRELKMLMLRIQL--DEFTYTSV 288 (790)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~------------------------~~~~~~~li~~~~~~~~~m~~~~~~p--~~~t~~~l 288 (790)
--.+|+.+...+++++-... .+.+..++|... ...|+.- -..||..-
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av-------igigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV-------IGIGVEEEDRKSTWLDD 522 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH-------HhhccccchhHhHHhhh
Confidence 77888888888887653110 111122221111 1122211 12455555
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSA 365 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 365 (790)
...|.+.+.++-++.+|...++ -++.+..+|...+..--..|..+.-..+|++... ...+.|-.....+-..
T Consensus 523 a~~~~k~~~~~carAVya~alq-----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQ-----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 5666666666666666666664 2333455566555555556666666666666543 2344555556666666
Q ss_pred CCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003868 366 GLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
|++..|..++....+. +...|-.-+..-..+..+++|..+|.+.... .|+...|.--+..---+++.++|.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 7777777776666553 2345666666666777777777777766653 4455554444444445566777777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 003868 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-D 518 (790)
Q Consensus 443 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 518 (790)
+.++. ++.-...|-.+...|-..++++.|.+.|..-.+ | .+..|-.|...--+.|..-+|..++++.+.. .| |
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 66665 344445666667777777777777777765544 3 3445666666666667777777777776653 33 3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003868 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCR 598 (790)
Q Consensus 519 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 598 (790)
..-|...+..-.+.|..+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++. +.|+.+.-++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHH
Confidence 35666677777777777777777766665 34555566666666666666666666666665 456666777778888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCE
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNK 666 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 666 (790)
....++.|...|++++..+|++..+|..+-..+...|.-++-.+++++... ..|.-|..|+.+...
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 889999999999999999999999999999999999999999999998865 345557777765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-11 Score=126.80 Aligned_cols=565 Identities=13% Similarity=0.095 Sum_probs=298.5
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhh---CCCCChHHHHHHHHHHhcCCChHHHHHHHhhC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDE---IPQPDIVARTTLIAAYSASDNVKLAREMFNKT 107 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 107 (790)
.+.|..++..+++.. +.....|-+|-..|-+.|+..++...+-. +...|...|-.+-....+.|++..|+-.|.+.
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555555555555443 23444455555555555555555443322 12234445555555555555555555555544
Q ss_pred CCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchh
Q 003868 108 PLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTS 186 (790)
Q Consensus 108 ~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 186 (790)
.+. +++...+---...|-+.|+...|.+-|.+|.....+.|-.-+..++.
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~----------------------------- 284 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR----------------------------- 284 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH-----------------------------
Confidence 442 22222222223344455555555555555554321001011111111
Q ss_pred HHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC-----CCeeeHHHHHHHHHhCCChhHHHHHHHhcccC----Ccc
Q 003868 187 VLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-----RDELSWTTMMTGYVKNDYLDAAREFLDGMSEN----VGV 257 (790)
Q Consensus 187 ~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~ 257 (790)
..+..|... ++-+.|.+.++.... -+...++.++..|.+...++.|......+..+ |..
T Consensus 285 ---~~~~~~~~~---------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 285 ---RVAHYFITH---------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred ---HHHHHHHHh---------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 112223333 444666666665543 25566889999999999999999888877431 111
Q ss_pred hh----------hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 258 AW----------NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 258 ~~----------~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
.| |.+.. ...++.++... .-+.-++......+....+...+..... .+..++..|.-+
T Consensus 353 e~~~~~~~~~~~~~~~~---------~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~--~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCE---------VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNV--WVSDDVDLYLDL 420 (895)
T ss_pred hhhhhhhcccccccccc---------CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcC--ChhhhHHHHHHH
Confidence 11 00000 11122222222 1122233444555555555555555211 145567788889
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGE 400 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~ 400 (790)
.++|...|++.+|.++|..+.. .+...|-.+...|...|..++|.+.|++...-++ ..--+|...+.+.|+.+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 9999999999999999998875 3667899999999999999999999999886443 45556667788899999
Q ss_pred HHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------------CCC
Q 003868 401 EGLKLFSQMRL--------EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS----------------------GYD 450 (790)
Q Consensus 401 ~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----------------------g~~ 450 (790)
+|++.+..+.. .+..|+..........+...|+.++-..+-..|+.. +..
T Consensus 501 kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~ 580 (895)
T KOG2076|consen 501 KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSK 580 (895)
T ss_pred HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccc
Confidence 99999988542 234455555555566667777776644443333211 011
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--
Q 003868 451 SSLSAGNALITMYARCGVVEAANCVFNTM--------PNVDSV----SWNAMIAALGQHGNGARAIELYEQMLKEGIL-- 516 (790)
Q Consensus 451 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-- 516 (790)
........++.+-.+.++....++-...- ...... .+.-++..+++.+++++|+.+...+......
T Consensus 581 ~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 581 RYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred ccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc
Confidence 11122222333333333322211111111 001111 1233445556666666666666655543211
Q ss_pred CCh-h-hH-HHHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHH-----------------------------
Q 003868 517 PDR-I-TF-LTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARF----------------------------- 561 (790)
Q Consensus 517 p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l----------------------------- 561 (790)
++. . .+ ...+.++...+++..|..+++.|...++...+ ...|++.
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 111 0 11 22333445556666666666655543222211 1223311
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-H----------HHhCCHHHHHHHHHHHHhcCCC--CC
Q 003868 562 ------IDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAG-C----------RIHGNIDLGIQAAEQLFQLMPH--HA 621 (790)
Q Consensus 562 ------i~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~ 621 (790)
...+..++.+..|+..+-+. ...||.+..+.++.. + .+|-.+-.+...+.+..++... .-
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 12234556677776654433 234554444433322 1 1233345666777777766444 55
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|-..|-..-|..++++..+
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 7889999999999999999999999975
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-09 Score=110.93 Aligned_cols=533 Identities=12% Similarity=0.077 Sum_probs=327.1
Q ss_pred CChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 003868 64 LKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRD 139 (790)
Q Consensus 64 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~ 139 (790)
+++..|+.++....+ .++..|-+-...--..|.+..|+.+..+--+. +++...|---| +...++.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 455666666666654 23334443333334456666666655432221 23444442222 23334444444443
Q ss_pred hhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHc
Q 003868 140 MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD 218 (790)
Q Consensus 140 m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~ 218 (790)
..+. -|+++. .-+.+.--..+ .... ++.....+. ++.++.+|...+.. ...++|+.++.
T Consensus 341 Avr~--~P~Sv~--lW~kA~dLE~~~~~K~--RVlRKALe~-iP~sv~LWKaAVel-------------E~~~darilL~ 400 (913)
T KOG0495|consen 341 AVRF--LPTSVR--LWLKAADLESDTKNKK--RVLRKALEH-IPRSVRLWKAAVEL-------------EEPEDARILLE 400 (913)
T ss_pred HHHh--CCCChh--hhhhHHhhhhHHHHHH--HHHHHHHHh-CCchHHHHHHHHhc-------------cChHHHHHHHH
Confidence 3322 233221 11222111111 1111 222222221 34456666666554 66667888887
Q ss_pred cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCCh
Q 003868 219 EMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLF 298 (790)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 298 (790)
+..+--.. -..|..+|++..-++.|..++... ...++-+...|.+....=-..|+.
T Consensus 401 rAveccp~-s~dLwlAlarLetYenAkkvLNka-----------------------Re~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 401 RAVECCPQ-SMDLWLALARLETYENAKKVLNKA-----------------------REIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhhCCCChhHHHHHHHHHHhcCCH
Confidence 65542111 122444566677788999999875 334555666666666666667777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCCHHHHH
Q 003868 299 RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE------RDLVSWNAILSAYVSAGLIDEAK 372 (790)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~ 372 (790)
+....+....+..-...|...+..-|-.=...+-..|.+-.+..+...... .--.+|+.-...|.+.+.++-|.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 777777766655444456666666666666666666766666666655442 22346777777777777777777
Q ss_pred HHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 373 SLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 373 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
.+|....+- +...|...+..--..|..++...+|++.... ++-....+.......-..|+...|+.++..+.+..
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 777766652 3355666555555567777777777777764 33344445455555666688888888887777764
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVL 526 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 526 (790)
+.+..++-+-+..-....+++.|+.+|.+... ++...|.--+....-.++.++|++++++.++ .-|+.. .|..+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 33667777777777777888888888876653 5666666666666667777888888877777 466654 566666
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhCCHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF--KPSAPIWEALLAGCRIHGNID 604 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~ 604 (790)
..+.+.++++.|.+.|..=.+ ..+-.+-.|-.|.+.=.+.|.+-.|..++++..+ +.+...|...+..-.++|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 677777778887777766543 3344456677777777777788888888877632 236677888888878888888
Q ss_pred HHHHHHHHHHhcCCC------------------------------CCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 605 LGIQAAEQLFQLMPH------------------------------HAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|..+..++++.-|. |+......+.++-...++++|.+.|.+....
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888777777765543 3556677788888889999999999998653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-11 Score=126.63 Aligned_cols=594 Identities=13% Similarity=0.076 Sum_probs=295.0
Q ss_pred hhccchhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHH
Q 003868 8 YIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTL 87 (790)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 87 (790)
++.|++.+|++++..++..|+ .+.|. +|..|.-...+.....++.++....+.++.+.|. +|-..+|+.|
T Consensus 20 gi~PnRvtyqsLiarYc~~gd--ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGD--IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCC--Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 355666777777777777676 66666 6666665554444444444444444444433333 3556667777
Q ss_pred HHHHhcCCC--------------------------------------------------------hHHHHHHHhhCCCCC
Q 003868 88 IAAYSASDN--------------------------------------------------------VKLAREMFNKTPLKM 111 (790)
Q Consensus 88 i~~~~~~g~--------------------------------------------------------~~~A~~~~~~~~~~~ 111 (790)
+.+|.+.|| ++.+.+++..+|...
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777766666 333333333333210
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCC-CCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHH
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV-KPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLN 189 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 189 (790)
.+. ..-.+++-+..... -.+-+..|.+.+. .|++.+|..++.+....|+ +.++ .+...|.+.|+..+..-+-
T Consensus 170 ~~~-p~~vfLrqnv~~nt---pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak--~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WNA-PFQVFLRQNVVDNT---PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK--NLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccc-hHHHHHHHhccCCc---hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH--HHHHHHHHcCCCcccccch
Confidence 000 00001111111111 1122222333333 4777778887777777777 7777 7777777778777766555
Q ss_pred HHHHhhhccCCCCccCCCCCHHHHHHHHccCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHh
Q 003868 190 ALISVYVKCVSSPFVSSRSLMGAARRVFDEMP----ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265 (790)
Q Consensus 190 ~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~ 265 (790)
.|+-. . ++...+..+...|. .|+..|+...+-....+|....+....+.-.--....++.+..|
T Consensus 244 pLl~g---~---------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---I---------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---C---------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 55443 2 55556666665554 46777777666666665553332222211000000011112222
Q ss_pred hhhhH--------------HHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCC---CChhHHHHHH
Q 003868 266 YVHRE--------------LKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPE---FSLPVNNALV 328 (790)
Q Consensus 266 ~~~~~--------------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li 328 (790)
...+. .+..-.|+......|...... ...|.-+...++-..+.. +... .++..+..+
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~n----pt~r~s~~~V~a~~~~- 385 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLN----PTLRDSGQNVDAFGAL- 385 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcC----CccccCcchHHHHHHH-
Confidence 10000 012223333333333332222 235666667777666653 2221 122233333
Q ss_pred HHHHHCCCHHHHHHHHhhCCCCChh-HHHHHHHHHHH---cCCHHHHHHHHHHhcc----------------CChh----
Q 003868 329 TLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAYVS---AGLIDEAKSLFEAMRE----------------RNLL---- 384 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~~~~---- 384 (790)
+.+.|.+...+... .++ .-.+... .....+..++...... +...
T Consensus 386 -----------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 386 -----------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred -----------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchh
Confidence 33444444433221 111 1111111 1112222222222111 0001
Q ss_pred -------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhH
Q 003868 385 -------SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSA 455 (790)
Q Consensus 385 -------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~~~~ 455 (790)
.-+.++..++..-+..+++..-+.....-+. ..|..++.-+.....++.|..+.+++... .+..|...
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 1233444444444444444333222221111 45677777777777777777777776543 34556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------------
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN-----VD-SVSWNAMIAALGQHGNGARAIELYEQMLKEGI-------------- 515 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------- 515 (790)
+..+.+...+.+...++..++.++.+ ++ ..+.--+.++-+..|+.+...++++-+...|+
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkd 610 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKD 610 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeecc
Confidence 77778888888888888877777764 11 22333445555666666666555555444332
Q ss_pred ----------------CCChhhHHHHHHHH---------------------HccCCHHHHHHHHHHcccCCCC-------
Q 003868 516 ----------------LPDRITFLTVLSAC---------------------NHAGLVKEGRRYFETMHGPYGI------- 551 (790)
Q Consensus 516 ----------------~p~~~t~~~ll~a~---------------------~~~g~~~~a~~~~~~~~~~~~~------- 551 (790)
+|.+.....+.+.+ .+.|++.+|..+.+. .|+
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RD 686 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRD 686 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCc
Confidence 22222222222222 122222222222110 111
Q ss_pred --------CC---------ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 003868 552 --------PP---------GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG---NIDLGIQAAE 611 (790)
Q Consensus 552 --------~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~ 611 (790)
.| .......|+..|.+.|+++.|..++.+++..|+..+...|...++++. ++.++...-+
T Consensus 687 r~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~e 766 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETE 766 (1088)
T ss_pred cccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHH
Confidence 01 111222367788999999999999999998888888888887776654 5556666667
Q ss_pred HHHhcCCCC---CcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 612 QLFQLMPHH---AGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 612 ~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
++.++.|.. ...|.-.+....+....+-|.+.+.+..++....
T Consensus 767 kas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 767 KASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred HHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCC
Confidence 776665543 3334444444455556668889999998874433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-11 Score=129.21 Aligned_cols=342 Identities=15% Similarity=0.154 Sum_probs=204.9
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHcCCHH
Q 003868 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQM---PERDLVSWNAILSAYVSAGLID 369 (790)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~ 369 (790)
...|+++.|..++.++++ ..+. ....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|+++
T Consensus 150 farg~~eeA~~i~~EvIk----qdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK----QDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHHHHHHHH----hCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334777777777777776 4432 5566777777777777777776655332 2345566777777777777777
Q ss_pred HHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChHHHHHHHH
Q 003868 370 EAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----AFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 370 ~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
+|.-.|.+..+.++ ..+-.-+..|.+.|+...|+..|.++.....+.|.. +.-.++..+...++-+.|.+.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777765433 333344566777777777777777776643211111 22223334444444455555555
Q ss_pred HHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 443 QLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517 (790)
Q Consensus 443 ~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 517 (790)
..... +-..+...++.++.+|.+...++.|......+.. +|..-|.+- - .++. +-..++. ...++.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~~~-~~~~~~~--~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RRRE-EPNALCE--VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hccc-ccccccc--CCCCCCc
Confidence 44432 2223334445555555555555555444333321 111111000 0 0000 0000000 0011222
Q ss_pred ChhhHHHHHHHHHcc--CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHH
Q 003868 518 DRITFLTVLSACNHA--GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP---FKPSAPIWEA 592 (790)
Q Consensus 518 ~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ 592 (790)
+...+ .+.-+..+. +...+++..|..-... ...-+...|.-+.++|...|++.+|+.+|..+- ...+..+|--
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22221 111222333 3444444444332221 234457789999999999999999999999872 2235679999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...|...|.+++|.+.|++++.+.|++..+-..|+.+|...|+.++|.+++..+..
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999863
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-14 Score=144.56 Aligned_cols=256 Identities=18% Similarity=0.173 Sum_probs=111.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG-AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
...+.+.|++++|++++++......+|+...|-. +...+-..++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4555666778888888765544432344444444 333445677888888888888776533 55566777777 68889
Q ss_pred HHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 469 VEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 469 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+++|.++++..-+ ++...+..++..+...|+++++.+++++..... ..++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888876643 566778888888999999999999999987543 2345567777888889999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.+. .+.+......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++....|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 863 33357788899999999999999888877651 23456678999999999999999999999999999999999
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...+++++...|+.++|.+++.+..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-10 Score=123.18 Aligned_cols=532 Identities=12% Similarity=0.042 Sum_probs=303.9
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC----CChHHHHHHHHHHhcCCChHHHHHHHhhCCCC
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ----PDIVARTTLIAAYSASDNVKLAREMFNKTPLK 110 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 110 (790)
..++..+...|+.|+.+||..||..||..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+. .
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e- 80 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E- 80 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-
Confidence 568899999999999999999999999999999999 8887764 45678899999999999987766 3
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHH-hhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHH-HHHhCCCCchhH
Q 003868 111 MRDTVFYNAMITAYSHNSNGHAAIELFRD-MRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCT-VVKSGTGLFTSV 187 (790)
Q Consensus 111 ~~~~~~~n~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~-~~~~g~~~~~~~ 187 (790)
|...+|+.|..+|.+.||... ++..++ |. .+...+...|- .... .+.-. -...++.||..
T Consensus 81 -p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~--~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 81 -PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPER--WFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred -CchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHH--HHHhhcccCcccchhHH-
Confidence 888899999999999999876 333333 22 12222222222 1110 00000 00112223332
Q ss_pred HHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC--CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHh
Q 003868 188 LNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER--DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISG 265 (790)
Q Consensus 188 ~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~ 265 (790)
|.......+ |-++.+.+++..+|.- +. ..-.+++-...... -..++...
T Consensus 144 -n~illlv~e----------glwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~nt--pvekLl~~--------------- 194 (1088)
T KOG4318|consen 144 -NAILLLVLE----------GLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNT--PVEKLLNM--------------- 194 (1088)
T ss_pred -HHHHHHHHH----------HHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCc--hHHHHHHH---------------
Confidence 222222222 6777788888777632 11 00001222221111 11122221
Q ss_pred hhhhHHHHHHhCc-cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHH
Q 003868 266 YVHRELKMLMLRI-QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF 344 (790)
Q Consensus 266 ~~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 344 (790)
..... .|++.+|..++......|+.+.|..++..|.+ .|++.+..-+-.|+-+ .++..-+..+.
T Consensus 195 --------cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke----~gfpir~HyFwpLl~g---~~~~q~~e~vl 259 (1088)
T KOG4318|consen 195 --------CKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE----KGFPIRAHYFWPLLLG---INAAQVFEFVL 259 (1088)
T ss_pred --------HHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH----cCCCcccccchhhhhc---CccchHHHHHH
Confidence 22222 59999999999999999999999999999999 7877777666666544 66766677777
Q ss_pred hhCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCC
Q 003868 345 NQMP----ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQ-----NGYGEEGLKLFSQMRLEGFK 415 (790)
Q Consensus 345 ~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~ 415 (790)
..|. .|+..|+.-.+-.+..+|....+.+..+.-..-....+..+..+... .+...-....+.+..-.|+.
T Consensus 260 rgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d 339 (1088)
T KOG4318|consen 260 RGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTD 339 (1088)
T ss_pred HHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccc
Confidence 7665 37888887777666666653322222111111111223333333111 11122222333333333444
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh-HHHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD---SSLSAGNALITMYARCGVVEAANCVFNTMPNVDSV-SWNAMI 491 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li 491 (790)
.....|..... ...+|.-++.+++-..+..-... .++..+..++ .+.|.+...+... .++ .-
T Consensus 340 ~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e~~~~~~i~~-~~ 405 (1088)
T KOG4318|consen 340 ILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIERHICSRIYY-AG 405 (1088)
T ss_pred cchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHHhhHHHHHHH-HH
Confidence 33333322222 23366666777766665432211 1222333333 3444444332111 111 11
Q ss_pred HHHHh---cC------------ChHHHHHHHHHHHH----cCCCC-------ChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 492 AALGQ---HG------------NGARAIELYEQMLK----EGILP-------DRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 492 ~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.+... .. +...+++-+..+.. .-..| -...-+.++..|...-+..+++..-+..
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11 11111111111110 00111 0112344455555555555555443333
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---C
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-----FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL---M 617 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~ 617 (790)
... -+ ...|..||+.+....++++|..+.++.. +.-|..-+..+.+...+++....+..+.++..+. .
T Consensus 486 e~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~ 561 (1088)
T KOG4318|consen 486 EDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENE 561 (1088)
T ss_pred HHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCC
Confidence 321 11 2678999999999999999999998873 2345556778888888999999898888887764 3
Q ss_pred CCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
|.-..+...+.+..+..|+.+...++.+-+...|+.-
T Consensus 562 ~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 562 PLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred chHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 3334566778888889999999999999998888865
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-09 Score=108.70 Aligned_cols=493 Identities=14% Similarity=0.128 Sum_probs=346.4
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
+...|-...+-=-..+++..|+.+|+..... .++...|--.+..-.++..+..|..++++....=...|-.-|--
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY---- 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY---- 147 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH----
Confidence 3344444444444567788999999877654 67788888889999999999999999998774211111111111
Q ss_pred HhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC--CCCeeeHHHHHHHHH
Q 003868 159 LALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYV 236 (790)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 236 (790)
+.|=-.. |++..|+++|++-. +|+...|++.|.--.
T Consensus 148 ---------------------------------~ymEE~L---------gNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 148 ---------------------------------IYMEEML---------GNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred ---------------------------------HHHHHHh---------cccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 1111112 89999999998654 689999999999999
Q ss_pred hCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 003868 237 KNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPT 316 (790)
Q Consensus 237 ~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 316 (790)
+-...+.|..++++. .-+.|+..+|.-..+.=.+.|++..++.+++.++..-. +
T Consensus 186 RykeieraR~IYerf------------------------V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~--~ 239 (677)
T KOG1915|consen 186 RYKEIERARSIYERF------------------------VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG--D 239 (677)
T ss_pred HhhHHHHHHHHHHHH------------------------heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--h
Confidence 999999999999976 34569999999999888899999999999998876311 1
Q ss_pred CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCCHHHHHHH--------HHHhccCCh
Q 003868 317 PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-----RDLVSWNAILSAYVSAGLIDEAKSL--------FEAMRERNL 383 (790)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~ 383 (790)
...+..++++....-..+..++.|.-+|.-..+ +....|.....-=-+-|+....... ++.+...|+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 122345566666666778888999888765443 2233454444444455654433332 344444444
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCChHHHHHHHHHHHHhCCC
Q 003868 384 ---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-------AFAGAITSC---AGLGALENGRQLHAQLVHSGYD 450 (790)
Q Consensus 384 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~~ 450 (790)
.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.++++++..++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 57777777778889999999999999875 566321 121111122 356889999999999988 356
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHH
Q 003868 451 SSLSAGNALITMYA----RCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFL 523 (790)
Q Consensus 451 ~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 523 (790)
...+++.-+=-+|+ ++.++..|.+++..... |-..++...|..-.+.++++.+..+|++.++ ..|.. .+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 66677776666665 57899999999988764 7778888888888999999999999999999 55644 6777
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCR---- 598 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 598 (790)
.....=...|+.+.|..+|.-+........-...|.+.|+.-...|.++.|..+++++ ...+...+|-++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777889999999999999875344444567788888888999999999999987 33455668887765443
Q ss_pred -HhC-----------CHHHHHHHHHHHHhcCCCC--Ccc----hHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 599 -IHG-----------NIDLGIQAAEQLFQLMPHH--AGT----YVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 599 -~~g-----------~~~~a~~~~~~~~~~~p~~--~~~----~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+.+ +...|..+|+++.....+. ..- .....+.-...|.-.+...+-++|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 334 5678888888877542221 122 2233344455677677776666664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-12 Score=130.05 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHHH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG--YDSSLSAGNALITMYARCGVVEA-ANCV 475 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~~ 475 (790)
..+|+..|.+... .+.-+.+....+..+|...+++++++.+|+.+.+.. .--+..+|.+.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 6888888888443 345555777778888999999999999999888752 22356667766654433222221 2233
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 476 FNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 476 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
.+.. ...+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 IDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 3332 34678999999999999999999999999988 677 44688888778888888999999999865 346
Q ss_pred hhHHHH---HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 555 EDHYAR---FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 555 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
..+|++ |...|.|.++++.|+-.|++. .+.| +.++.-.+...+.+.|+.|+|++++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 666665 456788999999999999886 5666 45566677777888899999999999999999999998899999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
++...+++++|.+.++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-11 Score=118.82 Aligned_cols=376 Identities=16% Similarity=0.109 Sum_probs=252.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCC-hhhHHHHHHHHHccCChHHHHHHHHH
Q 003868 229 TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLD-EFTYTSVISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 307 (790)
-..-.-|.++|++++|++.+.+. ....|| +..|...-.+|...|+++.+.+--..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~A------------------------I~l~p~epiFYsNraAcY~~lgd~~~Vied~Tk 174 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQA------------------------IELCPDEPIFYSNRAACYESLGDWEKVIEDCTK 174 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHH------------------------HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHH
Confidence 33455678899999999999965 456788 67777787888899999998887777
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHH------------HHHHHH
Q 003868 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLID------------EAKSLF 375 (790)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~------------~A~~~~ 375 (790)
.++ .++. -+..+..-..++-+.|++++|+.= +|-..+..++....-.- ++.+.+
T Consensus 175 ALE----l~P~-Y~KAl~RRA~A~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~ 240 (606)
T KOG0547|consen 175 ALE----LNPD-YVKALLRRASAHEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKL 240 (606)
T ss_pred Hhh----cCcH-HHHHHHHHHHHHHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 765 3322 234455555677777887776531 12222222222222211 222222
Q ss_pred HHhccCC---hh-----------------------HHHHHHHHHHh--cC---ChHHHHHHHHHHHHc-CCCCCHH----
Q 003868 376 EAMRERN---LL-----------------------SWTVMISGLAQ--NG---YGEEGLKLFSQMRLE-GFKPCDY---- 419 (790)
Q Consensus 376 ~~m~~~~---~~-----------------------~~~~li~~~~~--~g---~~~~A~~~~~~m~~~-g~~p~~~---- 419 (790)
.+=+.|. .. +...+..++.. .+ .+..|...+.+-... -..++.-
T Consensus 241 k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~ 320 (606)
T KOG0547|consen 241 KENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA 320 (606)
T ss_pred cccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence 2111111 11 11111111111 01 123333332221110 0111111
Q ss_pred -----HHHHHHHH--HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHH
Q 003868 420 -----AFAGAITS--CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNA 489 (790)
Q Consensus 420 -----t~~~ll~~--~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 489 (790)
....++.+ +.-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++.++.|+...+ .|+.+|..
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyH 399 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYH 399 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHh
Confidence 11112222 233578888888888888875333 33377778889999999999999998765 36678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
-.+.+.-.+++++|..=|++.+. +.|+. ..|..+.-+..+.+.+++++..|++.++ .++..++.|+.....+...
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhH
Confidence 88888888899999999999998 67866 4777777778899999999999999998 5677789999999999999
Q ss_pred CChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 569 GKFSEAKDVIDSL-PFKPS---------APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
++++.|.+.|+.. .++|+ +.+-.+++-.-. .+|+..|+.+++++++++|....+|..|+.+-...|+.+
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 9999999999875 44444 222333333322 389999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003868 639 DAARVRKLMR 648 (790)
Q Consensus 639 ~a~~~~~~m~ 648 (790)
+|.++|++..
T Consensus 555 eAielFEksa 564 (606)
T KOG0547|consen 555 EAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-10 Score=121.21 Aligned_cols=217 Identities=11% Similarity=-0.037 Sum_probs=95.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHHHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS-------AGNALITMYA 464 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-------~~~~li~~y~ 464 (790)
.+...|++++|...++++.+.. +-+...+..+...+.+.|+++++.+++..+.+.+..++.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444432 2223334444444444455555555544444443221111 1122222222
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
+..+.+...++++..++ .++.....+..++...|+.++|.+++++..+ ..||.. ..++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHHHHhhccCCChHHHHHH
Confidence 33334444444444432 2444555555555555555555555555554 223321 1112222233555555555
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.+.+++.+.
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555443 22333344444555555555555555555443 3344444444444445555555555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=124.40 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHHHhccC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 003868 365 AGLIDEAKSLFEAMRER--NLL-SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA--GAITSCAGLGALENGRQ 439 (790)
Q Consensus 365 ~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 439 (790)
.|++++|++.+....+. ++. .|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888877776653 223 3333334447788899999999999874 55554333 33567888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHh--------HHHHHHHHHHhcCChHHHHHHHH
Q 003868 440 LHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSV--------SWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 440 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 567788899999999999999999999888752 111 33344444444555666667777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 003868 509 QMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-S 586 (790)
Q Consensus 509 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 586 (790)
.+-+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++......++.+++.+..++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 3446667888899999999999999999988753 5555322 233334569999999999876 3445 4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+....++...|...+++++|.+.++++++..|++ ..|..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5568899999999999999999999999999987 6688999999999999999999997643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-11 Score=118.38 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=176.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAG--AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVV 469 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 469 (790)
-|.++|+++.|+++++-..+..-+.-+..-+. .+.-.-...++..|.++-+.++... .-+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677777777777776665433222222221 2222222335666666555544321 11111111112223346899
Q ss_pred HHHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 470 EAANCVFNTMPNVDSVSWNAMI---AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 470 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.+.|....+...|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999998887766544443 3466789999999999887652 33455677888889999999999999999887
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
. -++.|+.....|.++|-+.|+-..|.+..-. .. ++.+..+...|..-|....-.++++..++++--+.|+-...-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 5677889999999999999999999887543 33 334566666667777777778999999999988888875555
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 625 VLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..++.++.+.|++.+|..+++...++
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 56677778999999999999998653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-10 Score=119.41 Aligned_cols=280 Identities=13% Similarity=0.010 Sum_probs=151.3
Q ss_pred HCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CCh--hHHHHHHHHHHhcCChHHHHHH
Q 003868 333 KCGKVNEARDIFNQMPE--RD-LVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNL--LSWTVMISGLAQNGYGEEGLKL 405 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 405 (790)
..|+++.|.+.+....+ |+ ...+-....++.+.|+.++|.+.|.+..+ ++. ...-.....+.+.|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555554433 11 11222233445555666666666555432 111 1222234555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHHhc
Q 003868 406 FSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA-------GNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 406 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~-------~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.-......+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666653 22344555666666666666666666666666654332222 11111111222234455555555
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF---LTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
.++ .+...+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.++...+.....
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 553 3777788888888888888888888888887 35555421 111112233456666666666655432222
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDS---LPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.++
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2114445666666666666666666662 23456666666666666666666666666666544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-10 Score=111.10 Aligned_cols=327 Identities=12% Similarity=0.073 Sum_probs=233.9
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC-hhHHHHHHHHHHhc
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-LLSWTVMISGLAQN 396 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~ 396 (790)
..|...+-...-.+.+.|..+.|++.|......-+..|.+.+...--..+.+.+..+.......+ ...=-.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33555555555566677888888888877766555556555443333333333333333333221 11112234555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHH-HHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALITMYARCGVVE-AAN 473 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~-~A~ 473 (790)
...++++.-.......|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.--.+.++. -|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 66788888888888878766666555555566678899999999999998731 124556665543322222222 133
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 474 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
.++ .+.+--+.|..++.+-|.-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+-++.+.+ -.+
T Consensus 321 ~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 321 NVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 332 23333456677778888889999999999999998 66766 4677777789999999999999999885 234
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
-|-..|-.|..+|.-.+...=|+-+|++. .++| |...|.+|...|.+.++.++|+..|.+++...--+..+|..|+++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 46678889999999999999999999987 5666 778999999999999999999999999999877788999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|.+.++.++|.+.+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-09 Score=105.67 Aligned_cols=400 Identities=13% Similarity=0.124 Sum_probs=296.6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQ 303 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 303 (790)
+...|--...--..++++..|..+|++..+ +-..+...|.-.+..=.+...+..|+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALd-----------------------vd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALD-----------------------VDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------------cccccchHHHHHHHHHHhhhhHhHHHH
Confidence 344455444445556778889999987522 112344556666677778889999999
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHhc--
Q 003868 304 VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMR-- 379 (790)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 379 (790)
+++..+. .-+.. ...|--.+.|--..|++..|.++|++-. +|+...|++.|.-=.+...++.|..++++..
T Consensus 129 v~dRAvt----~lPRV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 129 VWDRAVT----ILPRV-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHH----hcchH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 9999986 43333 3456666777778899999999999866 5999999999999999999999999999875
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCCc--h
Q 003868 380 ERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA----GLGALENGRQLHAQLVHSGYDSS--L 453 (790)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~i~~~~~~~g~~~~--~ 453 (790)
.|++.+|-.....=.+.|....|..+|....+. --|...-..++.+++ +...++.|..+++.++..- +.+ .
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~rae 280 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAE 280 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHH
Confidence 588889998888888999999999999887663 123333334444443 5677889999999988762 222 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH--------hcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---
Q 003868 454 SAGNALITMYARCGVVEAANCVF--------NTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--- 519 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 519 (790)
..|..+...--+-|+........ +.+.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 55666665555667654444332 22222 26678887888888889999999999999875 66633
Q ss_pred ----hhHHHHHHHH---HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCH
Q 003868 520 ----ITFLTVLSAC---NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL----CRAGKFSEAKDVIDSL-PFKPSA 587 (790)
Q Consensus 520 ----~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~ 587 (790)
..|.-+=.+| ....+++.+.++++...+ -++....++.-+--+| .|+.++..|.+++... |.-|..
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 1232222233 356889999999999886 4555566766655554 4788999999999775 778888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.++...|..-.+.++++....+|++.++..|.|..++...+..-...|++|.|..+|+...++...-.|.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 8999999888999999999999999999999999999999999999999999999999888765443343
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-11 Score=123.90 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHhccC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003868 367 LIDEAKSLFEAMRER--NL-LSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPCDYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 367 ~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
+..+|...|.+.++. |. .....+..+|...+++++|.++|+...+.. ..-+...|+++|..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777775543 22 334556777888888888888888887642 112445666666544321 112222
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.+-.-.--+..+.+|-++.++|.-.++.+.|.+.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22111223556789999999999999999999999998864 456788777778888899999999998876 6676
Q ss_pred hh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003868 519 RI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALL 594 (790)
Q Consensus 519 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 594 (790)
.. .|..+...|.+.++++.|.-.|+++.+ +.| +.....++...+.+.|+.|+|++++++. ...| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 64 788888899999999999999999885 455 5667778888999999999999999987 3344 444444455
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+++++|+..++++.++.|++...|..++.+|-+.|+.+.|+.-|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6677789999999999999999999999999999999999999999988887765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-09 Score=103.80 Aligned_cols=247 Identities=12% Similarity=0.090 Sum_probs=118.3
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC------ChhHHHHHHHHHH
Q 003868 290 SACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER------DLVSWNAILSAYV 363 (790)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~ 363 (790)
.++-.....+++.+-...... .|+..+...-+....++-...+++.|+.+|+++.+. |..+|+.++ |+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~----~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSS----VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 344444455666666666665 555555555555555566666777777777777642 344555544 22
Q ss_pred HcCCHHHH--HHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003868 364 SAGLIDEA--KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 364 ~~g~~~~A--~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
++.+..-+ -...-.+-+=-+.|...+.+-|.-.++.++|...|+...+.+ +-....++.+..-|..+.+...|.+-+
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22221100 000011111123444445555555555555555555555432 112233444444455555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
+.+++-. +.|-..|-.|..+|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....|- .+
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 5544432 33444444455555555555555555544432 2445555555555555555555555555444331 13
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 519 RITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 519 ~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
...+..|...+-+.++.++|..+|.+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445555555555555555444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=116.74 Aligned_cols=279 Identities=11% Similarity=0.021 Sum_probs=201.1
Q ss_pred HHcCCHHHHHHHHHHhccC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHH
Q 003868 363 VSAGLIDEAKSLFEAMRER--N-LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENG 437 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 437 (790)
...|+++.|.+.+.+..+. + ...+-.......+.|+.+.|.+.+.+..+.. |+. ..-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 5579999999999888764 2 2344555677888899999999999987643 443 2333346777889999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHHH
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNA----MIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 510 (790)
...++.+.+.. +.+..+...+...|...|++++|.+.++...+ .+...+.. ...+....+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 55677888999999999999999999988774 23333321 111223333344444566666
Q ss_pred HHcCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH-HHHHHHH--HHhcCChHHHHHHHHhC-CC
Q 003868 511 LKEGI---LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH-YARFIDL--LCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 511 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~~ 583 (790)
.+..- +.+...+..+...+...|+.++|.+.+++..+. .|+... .-.++.. ....++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55311 126677888888999999999999999999864 333321 0012222 23357778888888765 33
Q ss_pred CCC-H--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 584 KPS-A--PIWEALLAGCRIHGNIDLGIQAAE--QLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 584 ~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|+ + ....++...|.+.|++++|.+.++ ..++..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443 3 567789999999999999999999 567777766 457799999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-12 Score=127.61 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=85.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 471 (790)
.....++.++|...++++...+.. +...+..++.. ...+++++|.++.....+.. ++...+..++..|.+.|++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHH
Confidence 333344455555555555443211 22233333333 34555555555554443332 233444455555666666666
Q ss_pred HHHHHhcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 472 ANCVFNTMP-----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 472 A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+.++++.+. ..+...|..+...+.+.|+.++|++.|++..+ ..|+. .....++..+...|+.+++.+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 666655532 23566677777777777777777777777777 46653 45666777777777777777777776
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.+. .+.+...+..+..+|...|+.++|...+++. ...| |+.+...+..++...|+.++|.++.+++++
T Consensus 207 ~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 207 LKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 653 2455566677777777788888888777775 2234 556666777777778888888877777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-07 Score=95.76 Aligned_cols=558 Identities=13% Similarity=0.145 Sum_probs=292.9
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---CCCcchHHHHH
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK---MRDTVFYNAMI 121 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~n~li 121 (790)
+..|....|..+=+.+ +.+......|+ ..|-..+....+.|++..-+..|+..... ......|...|
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 4556666666554433 44555555665 56777888888889888888888864432 12344688888
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHh------CCCCchhHHHHHHHh
Q 003868 122 TAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKS------GTGLFTSVLNALISV 194 (790)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~------g~~~~~~~~~~li~~ 194 (790)
......|-++-++.++++.++- .|. .-..-|.-++..++ .++. +..+.++.. .-..+...|+.+.+.
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~eaa--~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEAA--QRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHHH--HHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 8888888888889998888743 333 34455555556665 5444 444433222 124555666666666
Q ss_pred hhccCCCCccCCCCCHHHHHHHHccCCCC----CeeeHHHHHHHHHhCCChhHHHHHHHhcccC--CcchhhHHHHhhhh
Q 003868 195 YVKCVSSPFVSSRSLMGAARRVFDEMPER----DELSWTTMMTGYVKNDYLDAAREFLDGMSEN--VGVAWNALISGYVH 268 (790)
Q Consensus 195 y~~~~~~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~li~~~~~ 268 (790)
.++.+ .. +.--....++..+..+ -...|++|..-|.+.|.+++|.++|++-... .+--++.+.+.|++
T Consensus 220 is~~p---~~---~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 220 ISQNP---DK---VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhCc---ch---hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 66651 11 2222334455555443 3456888888888888888888888765433 22235566666665
Q ss_pred hHH-----HHH----HhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHH-
Q 003868 269 REL-----KML----MLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN- 338 (790)
Q Consensus 269 ~~~-----~m~----~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~- 338 (790)
-.. +|. ..+-+-+...+...+..+...-+.. --+...++- ...+.++..|..-+..| .|+..
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~~~lNsVlL----RQn~~nV~eW~kRV~l~--e~~~~~ 365 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR--PLLLNSVLL----RQNPHNVEEWHKRVKLY--EGNAAE 365 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc--chHHHHHHH----hcCCccHHHHHhhhhhh--cCChHH
Confidence 443 222 1122223333322222221110000 000011110 11111333333333322 12222
Q ss_pred ------HHHHHHhhCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh-------hHHHHHHHHHHhcCChHHHH
Q 003868 339 ------EARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL-------LSWTVMISGLAQNGYGEEGL 403 (790)
Q Consensus 339 ------~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~ 403 (790)
+|.+-.+-...+ --..|..+..-|-.+|+.+.|..+|++..+-+- ..|......=.+..+++.|+
T Consensus 366 ~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 366 QINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222222211 122455666666666666666666666654321 23444444444555566666
Q ss_pred HHHHHHHHcCC-----------CC------CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 404 KLFSQMRLEGF-----------KP------CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 404 ~~~~~m~~~g~-----------~p------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+++++.....- ++ +...|+..++.--..|-++..+.+++.++...+.....+.| ..-.+-..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhh
Confidence 66655432111 11 11123333333445577788888888888776543333322 22233455
Q ss_pred CCHHHHHHHHhcCCC----CCH-hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCCHH
Q 003868 467 GVVEAANCVFNTMPN----VDS-VSWNAMIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSAC--NHAGLVK 536 (790)
Q Consensus 467 g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~ 536 (790)
.-++++.++|++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |..|...-+..|+.|- ..-|...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 668888888887654 443 367776666554 2368889999999988 6777765444444332 2458888
Q ss_pred HHHHHHHHcccCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHhCCHHHHHHHH
Q 003868 537 EGRRYFETMHGPYGIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP---IWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
.|+.+++.+.. ++++. ...|+..|.--...=-+..-.+++++. ..-|+.. ...-....-.+.|.++.|..++
T Consensus 604 ~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 604 HAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888888765 44443 345665554322211111222223222 1123332 2222333335567777777777
Q ss_pred HHHHhcC-CC-CCcchHhhHHHHHhcCC
Q 003868 611 EQLFQLM-PH-HAGTYVLLSNMYANLGR 636 (790)
Q Consensus 611 ~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 636 (790)
...-++- |. ++..|...=..-.+.|+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 7666653 33 33445555555556666
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-07 Score=92.47 Aligned_cols=466 Identities=14% Similarity=0.155 Sum_probs=236.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHhhhCCC----------CChHHHHHHHHHHhcCCCh---HHHHHHHhhCCCCCCCc-
Q 003868 49 REHIINRLIDIYCKSLKLVYARTLFDEIPQ----------PDIVARTTLIAAYSASDNV---KLAREMFNKTPLKMRDT- 114 (790)
Q Consensus 49 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~- 114 (790)
++..-+-.|..+++.+++++|.+.+..... .+...|.-+-+..++.-+. -....+++.+...-+|.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 334456667777777888888777777653 3444565555555543321 12233444444432333
Q ss_pred -chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHH-HhCCCCchhHHHHH
Q 003868 115 -VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVV-KSGTGLFTSVLNAL 191 (790)
Q Consensus 115 -~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~l 191 (790)
..|++|...|.+.|.+++|.++|++-... .....-|+.+..+++.... ..+. ..+... +.|-..+.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~---~me~a~~~~~n~ed~------ 316 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAA---KMELADEESGNEEDD------ 316 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHH---HHhhhhhcccChhhh------
Confidence 46999999999999999999999987764 3455667888888876555 2222 111111 11111111
Q ss_pred HHhhhccCCCCccCCCCCHHHHHHHHccCCC---------------CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc
Q 003868 192 ISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---------------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG 256 (790)
Q Consensus 192 i~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 256 (790)
-+++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+..
T Consensus 317 ----------------~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv---- 374 (835)
T KOG2047|consen 317 ----------------VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV---- 374 (835)
T ss_pred ----------------hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH----
Confidence 223333333433322 244555544433 3456666666666542
Q ss_pred chhhHHHHhhhhhHHHHHHhCccCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCC---hhHHHHH
Q 003868 257 VAWNALISGYVHRELKMLMLRIQLD------EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFS---LPVNNAL 327 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 327 (790)
..+.|- ...|..+.+.|-..|+++.|+.+|+...+ ..++.- ..+|-.-
T Consensus 375 -------------------~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~----V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 375 -------------------KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK----VPYKTVEDLAEVWCAW 431 (835)
T ss_pred -------------------HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc----CCccchHHHHHHHHHH
Confidence 122221 23467777778888888888888888876 443321 3445555
Q ss_pred HHHHHHCCCHHHHHHHHhhCCC-C--------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPE-R--------------------DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSW 386 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~-~--------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 386 (790)
.++-.+..+++.|+++.++... | +...|...+.---..|-++....+++++.+--+.|=
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 5566666777778877766542 1 223344444444444555555555555554332222
Q ss_pred HHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH---ccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003868 387 TVMIS---GLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITSCA---GLGALENGRQLHAQLVHSGYDSSLSAGNAL 459 (790)
Q Consensus 387 ~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 459 (790)
..+++ .+-...-++++.++|++-...=-.|+.. .|+.-|.-+. ....++.|+.+|+++.+ |.+|.-. -.+
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--Kti 588 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTI 588 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHH
Confidence 22211 1222333455555555433321223322 2222222221 22345666666666655 3333211 111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKE 537 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 537 (790)
--.|++ .--..|....|+.++++.... +++.. ..|+..|.-....--+..
T Consensus 589 yLlYA~---------------------------lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 589 YLLYAK---------------------------LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred HHHHHH---------------------------HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 112221 111245555555555554432 44433 245555543333323344
Q ss_pred HHHHHHHcccCCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHhCCHH
Q 003868 538 GRRYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEAKDVIDSLP--F--KPSAPIWEALLAGCRIHGNID 604 (790)
Q Consensus 538 a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~p~~~~~~~ll~~~~~~g~~~ 604 (790)
...+|++.++. -|+. ...--..++=++.|..+.|..++.-.. . ..+...|.+.=..-.+|||-+
T Consensus 641 TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 641 TREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred cHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 45555555542 2222 223334455566777777777665431 1 224556666666667777744
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-10 Score=109.22 Aligned_cols=198 Identities=15% Similarity=0.083 Sum_probs=163.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 451 SSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 451 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. ..+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3356677788889999999999999987653 356778888899999999999999999998842 233456777888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|.+.++.+......+.....+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222334567778888999999999999999876 3334 46678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|...++++++..|+++..+..++.++...|++++|.++.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=87.93 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 003868 112 RDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 112 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 161 (790)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-08 Score=102.06 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=144.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPNVD---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 526 (790)
|....+|-++.-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. +.-..-.+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4445556666666666677777777776654432 346777888888888888888888776652 222223444555
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL--------PFKP-SAPIWEALLAG 596 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~ 596 (790)
--|...+..+.|.++|.+.. ++-| |+..++-+.-+....+.+.+|..+|+.. +.++ -.++|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56777888888888888876 4444 4556666666666778888888887754 1112 34578889999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|.+.|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-11 Score=84.78 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=47.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-08 Score=95.14 Aligned_cols=274 Identities=16% Similarity=0.093 Sum_probs=154.7
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC--C--hhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 335 GKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER--N--LLSWTVMISGLAQNGYGEEGLKLFS 407 (790)
Q Consensus 335 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~ 407 (790)
|++..|+++..+-.+ .....|..-+.+--+.|+.+.|-.++.+..+. | ...+-+........|+++.|..-.+
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 445555544444332 11222333333444455555555555555443 1 2334444445555555666665555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 408 QMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL-------SAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 408 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
++.+.+ +-+.........+|.+.|++.....+...+.+.+.-.+. .+++.+++-....+..+.-...++..+
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555543 223334455555566666666666666666655544332 234445544444445555555666665
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 481 N---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 481 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.+.+.++.+.-.+..+.-.+..+..| ..
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L 330 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LL 330 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hH
Confidence 3 3555666677777778888888888887777766666 2223345556666665555555554333333 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
+.+|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|.+..++.+-
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666777777777777777777654 5667777777777777777777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-07 Score=91.53 Aligned_cols=390 Identities=11% Similarity=-0.016 Sum_probs=230.0
Q ss_pred chhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCC-eeeHHHHHHHHHhCCChh-HHHHHHHhcccCCc-----
Q 003868 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERD-ELSWTTMMTGYVKNDYLD-AAREFLDGMSENVG----- 256 (790)
Q Consensus 184 ~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~~~----- 256 (790)
+...---.+..|-.. ++-++|.....+++.+- ..--|.|+.-+-+.|.-. ++.--+.+....-+
T Consensus 96 ~~e~~r~~aecy~~~---------~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQI---------GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV 166 (564)
T ss_pred cHHHHHHHHHHHHHH---------ccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH
Confidence 334445677888888 88888888888887653 333444444443333221 22211111111100
Q ss_pred --chhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc--cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHH
Q 003868 257 --VAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN--SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332 (790)
Q Consensus 257 --~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (790)
+.-...++|...+...|....+.|...+...-+.+++. .++-..+.+.+-.+... ..++.++....++.+.|.
T Consensus 167 i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~---~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 167 IEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN---TTLRCNEHLMMALGKCLY 243 (564)
T ss_pred HHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh---ccCCccHHHHHHHhhhhh
Confidence 11222233333333456666666766666666665543 23333344444333331 445667778888888888
Q ss_pred HCCCHHHHHHHHhhCCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 333 KCGKVNEARDIFNQMPERDLVSWNAI---LSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQM 409 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (790)
..|+.+.|...|++...-|+.+..+| .-.+.+.|+.+ ....+...+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e-------------------------------~~~~L~~~L 292 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE-------------------------------QDSALMDYL 292 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh-------------------------------hHHHHHHHH
Confidence 88888888888887665443332222 22234455544 444444333
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhH
Q 003868 410 RLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVS 486 (790)
Q Consensus 410 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~ 486 (790)
.... +-+...|..-+......++++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|+.... -+..+
T Consensus 293 f~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 293 FAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred Hhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 3211 1111111111222233445555555555544432 22333333334555666777777777776543 36778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-ccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL-SACN-HAGLVKEGRRYFETMHGPYGIPPG-EDHYARFID 563 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 563 (790)
|.-|+..|...|++.+|+-+-+...+. +.-+..+...+. ..|. ....-++|..++++..+ +.|+ ....+.+..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHH
Confidence 888888888888888888777665552 222334444332 2232 23345889999988763 4565 456677888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.+.|+.+++..++++. ...||....+.|...++..+.+.+|...|..++.++|++..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 899999999999999885 56799999999999999999999999999999999999943
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-08 Score=96.48 Aligned_cols=290 Identities=16% Similarity=0.135 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHhhCCCCChhHH---HHHHHHHHHcCCHHHHHHHHHHhccC-Ch------hHHHHHHHHHHhcCChHHHH
Q 003868 334 CGKVNEARDIFNQMPERDLVSW---NAILSAYVSAGLIDEAKSLFEAMRER-NL------LSWTVMISGLAQNGYGEEGL 403 (790)
Q Consensus 334 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~-~~------~~~~~li~~~~~~g~~~~A~ 403 (790)
..+.++|.++|-+|.+.|..++ -+|.+-|-+.|..|.|+++-+.+.+. |. .+.-.+..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3677788888888876555444 35666777777777777777766553 32 23445556666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcC
Q 003868 404 KLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL----SAGNALITMYARCGVVEAANCVFNTM 479 (790)
Q Consensus 404 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~ 479 (790)
.+|..+.+.|. --......++..|-...++++|.++-..+.+.+-.+.. ..|.-|...+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~--------------- 191 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL--------------- 191 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---------------
Confidence 77777665431 12234455566666666666666666655554432221 12233333333
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 480 PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 480 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...+.+.|..++++..+ ..|+.+- =..+.+.....|+++.|.+.++.+.+. +..--..+.
T Consensus 192 ----------------~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl 252 (389)
T COG2956 192 ----------------ASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVL 252 (389)
T ss_pred ----------------hhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHH
Confidence 34444555555555444 2333321 122233444455555555555554443 222223344
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH---Hhc
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY---ANL 634 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~ 634 (790)
..|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.--..| .|+... +..
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daee 331 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccc
Confidence 44445555555555555554443 2222222223333222233333444444444444444432222 222222 234
Q ss_pred CChhHHHHHHHHHHhCCCccCCcee
Q 003868 635 GRWDDAARVRKLMRDRGVKKEPGCS 659 (790)
Q Consensus 635 g~~~~a~~~~~~m~~~g~~~~~~~s 659 (790)
|++.+..-++..|....++..|.+.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCce
Confidence 5678888888888877677666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-08 Score=93.16 Aligned_cols=278 Identities=15% Similarity=0.209 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC-CChh------HHHHHHHHHHHcCC
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-RDLV------SWNAILSAYVSAGL 367 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~------~~~~li~~~~~~g~ 367 (790)
+.+.++|.+.|-.+.+ .+ +.+..+--+|.+.|-+.|.+|.|+++-+.+.+ ||.. +...|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~----~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----ED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHh----cC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999986 33 33566777899999999999999999998876 4432 34456677889999
Q ss_pred HHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChHHHHHH
Q 003868 368 IDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----AFAGAITSCAGLGALENGRQL 440 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i 440 (790)
+|.|+.+|..+.+.+. .+...++..|.+..++++|++.-+++.+.+-++..+ .|.-+...+....+++.|...
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999998544 577889999999999999999999998877665543 344455555566778888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-
Q 003868 441 HAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR- 519 (790)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 519 (790)
+..+.+.+ +..+..--.+.+.+. ..|+++.|.+.++...+. .|+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~-------------------------------~~g~y~~AV~~~e~v~eQ--n~~yl 248 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVEL-------------------------------AKGDYQKAVEALERVLEQ--NPEYL 248 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHH-------------------------------hccchHHHHHHHHHHHHh--ChHHH
Confidence 88777654 222233333444444 445555555555555442 2322
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 003868 520 -ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI-DSLPFKPSAPIWEALLAGC 597 (790)
Q Consensus 520 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~ 597 (790)
.+...|..+|.+.|+.+++...+..+.+. .+....-..+.+......-.++|...+ +...-+|+...+..|+..-
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 23444555555555555555555555432 233333333333333333333333332 3344456665555555543
Q ss_pred HH---hCCHHHHHHHHHHHH
Q 003868 598 RI---HGNIDLGIQAAEQLF 614 (790)
Q Consensus 598 ~~---~g~~~~a~~~~~~~~ 614 (790)
.. .|...+....+++++
T Consensus 326 l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hccccccchhhhHHHHHHHH
Confidence 22 223344444455554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-08 Score=98.33 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVF 476 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 476 (790)
|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.++.+..-.++..++-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45666666665555444332 23344444455556666666666666665543455555555666666666666666555
Q ss_pred hcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 477 NTMP---NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-------ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 477 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+... ..+.........+|.+.|++.....++.+|.+.|+--|. .++..+++-+.+.+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 4433 345566666667777777777777777777776655443 356666666666666666566666655
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
. ..+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -...-.+.+-++.+.-++..++.+...|+++..+.
T Consensus 257 r--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 257 R--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred H--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 4 33444555556666677777777777666554 2222222 12223345556666666666666666666666666
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..|.+.+.|.+|.+.++...+
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 677777777777777666665544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=114.81 Aligned_cols=243 Identities=12% Similarity=0.029 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 399 GEEGLKLFSQMRLEGFKPCD-YAFAGAITSCA---------GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
.++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++++++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777653 4433 23333333222 2344778888888888764 4466777888888889999
Q ss_pred HHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHH
Q 003868 469 VEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 469 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999988764 3 466788888999999999999999999998 567654 333445556778999999999998
Q ss_pred cccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 545 MHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 545 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+.+. .+| +...+..+...|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8753 234 4556778888999999999999999886 344543 44556666666666 478888888776543333
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
..+..+..+|.-.|+-+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3444477888888998888877 7776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-09 Score=109.68 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=153.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------C
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHS-----GY-DSS-LSAGNALITMYARCGVVEAANCVFNTMPN----------V 482 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----g~-~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~ 482 (790)
|+..+...|...|+++.|..+++..++. |. .+. ....+.+...|...+++++|..+|+++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555554443 10 111 11223455666777777777766665532 1
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--CC
Q 003868 483 -DSVSWNAMIAALGQHGNGARAIELYEQMLK-----EGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYG--IP 552 (790)
Q Consensus 483 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~ 552 (790)
-..+++.|..+|.+.|++++|..++++..+ .|..+.. .-++.+...|...+.+++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234566667777788887777777766543 2222222 2466677788899999999988887654322 22
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Q 003868 553 P----GEDHYARFIDLLCRAGKFSEAKDVIDSL-------PF--KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQL-- 616 (790)
Q Consensus 553 p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 616 (790)
+ -..+|+.|...|...|++++|++++++. .. .+. ....+.|...|.+.++++.|.++|.+...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2468999999999999999999999876 11 222 346778889999999999999999887654
Q ss_pred --CCCC---CcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 617 --MPHH---AGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 617 --~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4678899999999999999999998875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-07 Score=89.63 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=162.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEA 471 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 471 (790)
.+.-.|+.-.|...|+..+.....++.. |--+...|....+-++..+.|..+.+.+ +.+..+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3445677888888888888765444432 6666677888888888888888888765 4456677777788888889999
Q ss_pred HHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 472 ANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 472 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
|..=|++.... ++..|-.+.-+.-+.+++++++..|++..+. -|+. ..|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999988764 4455655655666788999999999999884 4554 5788888889999999999999998764
Q ss_pred CCCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 548 PYGIPPG---------EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 548 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+.|+ +.+...++-.-. .+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2333 222222222222 38899999999886 5555 3457889999999999999999999998776
Q ss_pred C
Q 003868 617 M 617 (790)
Q Consensus 617 ~ 617 (790)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-06 Score=90.36 Aligned_cols=378 Identities=17% Similarity=0.203 Sum_probs=240.1
Q ss_pred HHHHHhhhccCCCCccCCCCCHHHHHHHHcc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhh
Q 003868 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDE--MPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 189 ~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
-+-|..|.+. |.+..|.+.-.. ....|......+..++++..-+++|-++|+.+..
T Consensus 619 laaiqlyika---------~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d------------- 676 (1636)
T KOG3616|consen 619 LAAIQLYIKA---------GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------- 676 (1636)
T ss_pred HHHHHHHHHc---------CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-------------
Confidence 3456777777 776666655421 1123555566666777777777777777776622
Q ss_pred hhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 267 VHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 267 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
+...+..+.+-.-+..|.++-+.... ..-+..-..-.+-+...|+++.|..-|-+
T Consensus 677 ------------------~dkale~fkkgdaf~kaielarfafp-------~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 677 ------------------FDKALECFKKGDAFGKAIELARFAFP-------EEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred ------------------HHHHHHHHHcccHHHHHHHHHHhhCc-------HHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 22223333333333444443332211 00011112233344556677777766654
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLL--SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 347 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
.. ..-..|.+-.....|.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .+.-.
T Consensus 732 a~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~da 797 (1636)
T KOG3616|consen 732 AN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDA 797 (1636)
T ss_pred hh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHH
Confidence 32 1222345566778899999999988887664 47778889999999999999987542 24556
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 003868 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAI 504 (790)
Q Consensus 425 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 504 (790)
|..|.+.|.++.|.++-.+.. |.+.....|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-++|..+..+
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHH
Confidence 778889999988877765443 33455566666677777889999999999988888754 77889999999888
Q ss_pred HHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 505 ELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
++.++- .|+. .|-..+..-+...|++..|...|-+... |.+-+.+|-..+.+++|.++-+.-+
T Consensus 871 rlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 871 RLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 877653 4444 4666677778888999999888876543 6677888888899999988876543
Q ss_pred C----CCCHHHHHHH------HHHHHHhCCHHHHHHHH------HHHHhc-----CCCCCcchHhhHHHHHhcCChhHHH
Q 003868 583 F----KPSAPIWEAL------LAGCRIHGNIDLGIQAA------EQLFQL-----MPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 583 ~----~p~~~~~~~l------l~~~~~~g~~~~a~~~~------~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
- +.-...|..- +..+.++|-.+.|.... +-++++ ...-+.....++.-+...|++++|.
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edas 1015 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDAS 1015 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhh
Confidence 1 1112334322 22344556555554432 222221 1223456777888888999999997
Q ss_pred HHHHHHHh
Q 003868 642 RVRKLMRD 649 (790)
Q Consensus 642 ~~~~~m~~ 649 (790)
+-+-+..+
T Consensus 1016 khyveaik 1023 (1636)
T KOG3616|consen 1016 KHYVEAIK 1023 (1636)
T ss_pred HhhHHHhh
Confidence 76665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-07 Score=93.93 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=151.1
Q ss_pred cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHH
Q 003868 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSW 355 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~ 355 (790)
.-+......-..-|-..+++.+..++.+.+.+ .. ++....+..-|..+.+.|+-.+-..+=.++.+ ....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle----~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLE----KD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh----hC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 33444444455555566666666666666664 22 33344444445556665654443333333332 244567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 356 NAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
-++.--|.-.|+..+|.+.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-...-+--+.--|.+.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 7666666666777777777776665443 46777777777777777777766655442 1111111222333455566
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+++.|.++|.++.... +.|+.+.+-+.-++.+.+.+.+|...|+.... ..+....
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~ 449 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLN 449 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhccc
Confidence 6666666666655442 44455555555555555555555555543321 0000000
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWE 591 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 591 (790)
+ ..--..+++.|..+|.+.+.+++|+..|++... -.+.+..+|.++.-.|...|+++.|.+.|.+. .++|+..+-.
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 0 001223455555666666666666666666554 23445566666666666666666666666554 4566665555
Q ss_pred HHHHHHH
Q 003868 592 ALLAGCR 598 (790)
Q Consensus 592 ~ll~~~~ 598 (790)
.+++.+.
T Consensus 527 ~lL~~ai 533 (611)
T KOG1173|consen 527 ELLKLAI 533 (611)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-06 Score=92.37 Aligned_cols=441 Identities=16% Similarity=0.167 Sum_probs=249.8
Q ss_pred hcCCChHHHHHHHhhCCCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhh
Q 003868 92 SASDNVKLAREMFNKTPLKMRDT-VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCM 170 (790)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 170 (790)
...|+++.|..+++..... |+. ..|-.+...-...|+..-|.+.|..+-.- ..++
T Consensus 455 id~~df~ra~afles~~~~-~da~amw~~laelale~~nl~iaercfaai~dv---------------------ak~r-- 510 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDV---------------------AKAR-- 510 (1636)
T ss_pred cccCchHHHHHHHHhhccC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHH---------------------HHHH--
Confidence 3456778887777765542 333 34666666666667666666665544210 1111
Q ss_pred hHHHHH-------HHhC-CCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChh
Q 003868 171 QMHCTV-------VKSG-TGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLD 242 (790)
Q Consensus 171 ~~~~~~-------~~~g-~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 242 (790)
.+|+.. +..| -..+-+-..+++.+..+ .+.+|+.+|-+-. + -..-|..|....+++
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k-----------kfk~ae~ifleqn--~---te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK-----------KFKEAEMIFLEQN--A---TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh-----------hhhHHHHHHHhcc--c---HHHHHHHHHHHHhHH
Confidence 222211 1112 22333333444444443 3777777774321 1 233466677777778
Q ss_pred HHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChh
Q 003868 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322 (790)
Q Consensus 243 ~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (790)
+|+.+-+.. |.+.-...-.+.++++...|+-+.|-++-. . .|
T Consensus 575 e~i~lae~~-------------------------~~p~~eklk~sy~q~l~dt~qd~ka~elk~---s----dg------ 616 (1636)
T KOG3616|consen 575 EAIALAEAK-------------------------GHPALEKLKRSYLQALMDTGQDEKAAELKE---S----DG------ 616 (1636)
T ss_pred HHHHHHHhc-------------------------CChHHHHHHHHHHHHHHhcCchhhhhhhcc---c----cC------
Confidence 877776543 222222233445555555555544433210 0 11
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh-----------------
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQM--PERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL----------------- 383 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------- 383 (790)
-.-+.|..|.|.|....|.+.-..- ...|......+..++.+...+++|-.+|+++..++-
T Consensus 617 d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 617 DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 1123466677777766665543221 123444444445555555555555555555544221
Q ss_pred ---------h-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch
Q 003868 384 ---------L-SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSL 453 (790)
Q Consensus 384 ---------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 453 (790)
+ .-......+.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+..... -.
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s 765 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--AS 765 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--cc
Confidence 1 112233344455555555554433221 12234455566677778777777665532 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG 533 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 533 (790)
.-|..+.+-|+..|+++.|+++|-+.. .++-.|..|.+.|+++.|.++-.+.. |-......|.+-..-.-..|
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhc
Confidence 346677788888888888888887643 34556778888888888887765543 22223345555555566778
Q ss_pred CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 534 LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
.+.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-..-..+...+..-+-..|+...|+..|-++
T Consensus 839 kf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 8888887765442 3443 36788888888888888877621222235566667777888888888777654
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
.-|-.-.++|-..+.|++|-++-+.
T Consensus 909 --------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 909 --------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 4566778999999999999887553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-06 Score=94.35 Aligned_cols=475 Identities=13% Similarity=0.093 Sum_probs=267.7
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh----hh-------------------hhhh--hHHHHHHH
Q 003868 124 YSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE----EE-------------------KQCM--QMHCTVVK 178 (790)
Q Consensus 124 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----~~-------------------~~~~--~~~~~~~~ 178 (790)
+...+.+++++.-+..-...+..-+..++..+..++..... ++ .... ....++..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 44556777888888777777777777776666554432111 11 1100 11112222
Q ss_pred hCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 003868 179 SGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENV 255 (790)
Q Consensus 179 ~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 255 (790)
..+.-|..+|..|.-+..+| |+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~---------g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~---- 383 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRC---------GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRES---- 383 (799)
T ss_pred hhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhh----
Confidence 23445778888888888888 889888888887653 24567888888888888888888888753
Q ss_pred cchhhHHHHhhhhhHHHHHHhCcc--CChhh-HHHHHHHHH-ccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH
Q 003868 256 GVAWNALISGYVHRELKMLMLRIQ--LDEFT-YTSVISACA-NSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331 (790)
Q Consensus 256 ~~~~~~li~~~~~~~~~m~~~~~~--p~~~t-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (790)
.+.. |+..+ +-..-..|. +.+..+++......++.......-......+-.+.-+|
T Consensus 384 --------------------~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 384 --------------------LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred --------------------cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 2333 43333 333333343 44666666666555554111111122233444444444
Q ss_pred HHCC-----------CHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc----CChhHHHHHHH
Q 003868 332 WKCG-----------KVNEARDIFNQMPE-----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RNLLSWTVMIS 391 (790)
Q Consensus 332 ~~~g-----------~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~ 391 (790)
...- ...++.+.+++..+ |++.-| +.--|+..++.+.|.....+..+ .+...|..+.-
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3321 12234444444322 222222 22235555666666655555433 24456666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSG-YDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~ 470 (790)
.+...+++.+|+.+.+..... ..-|......-+..-...++.+++......+...- -.+. ....|+-.
T Consensus 522 vlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g 590 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEG 590 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhh
Confidence 666666666666666655443 11111111122222223455555544444433210 0000 00111122
Q ss_pred HHHHHHhcCC----C-CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--------hHHHHHHHHHccCCHH
Q 003868 471 AANCVFNTMP----N-VDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--------TFLTVLSACNHAGLVK 536 (790)
Q Consensus 471 ~A~~~~~~~~----~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~ 536 (790)
...+.+..+. + .|. .++..+ .+... -+...+..-.. |...-+.|... .|......+...+..+
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~ 667 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD 667 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch
Confidence 2233333221 0 121 122222 11111 11111100000 22222333332 3445556778889999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQ--AAEQ 612 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~ 612 (790)
+|...+.+..+ -.+.....|......+...|.++||.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..
T Consensus 668 ~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 668 EARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 99988888765 23445667777778899999999999988765 56664 5688899999999999888888 9999
Q ss_pred HHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 613 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++.+|.++.+|..|+.++.+.|+.++|.+.|.....
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998865
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-06 Score=86.86 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=163.6
Q ss_pred HHHHHcCCHHHHHHHHHHhc--------cCC-----h-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003868 360 SAYVSAGLIDEAKSLFEAMR--------ERN-----L-----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAF 421 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~--------~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 421 (790)
-.+...|++.+|+++++... +.| . ..--.+.-.+...|+..+|..+|...++.. .+|....
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~ 261 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL 261 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence 34566777777777777662 111 1 122334455667788888888888887764 3444222
Q ss_pred HHH---HHHHHccCChHH--HHHHH------------HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 003868 422 AGA---ITSCAGLGALEN--GRQLH------------AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD- 483 (790)
Q Consensus 422 ~~l---l~~~~~~g~~~~--a~~i~------------~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~- 483 (790)
... |.+...-.++-. ....+ ..+.. ........-+.++.+|. +..+.+.+.-...+...
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSP 338 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCc
Confidence 221 112222211111 11111 11111 11112233355666665 45566777777766532
Q ss_pred HhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHH--------HcccCCCC
Q 003868 484 SVSWNAMIAALG--QHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFE--------TMHGPYGI 551 (790)
Q Consensus 484 ~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~ 551 (790)
...+.+++.... +...+.+|.+++...-+. .|.. ......+......|+++.|.+++. .+.+. +.
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~ 415 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH 415 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc
Confidence 334445544432 233577888888877763 4555 344445556678999999999998 44432 33
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL--------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.+...++.++.+.++-+-|..++.+. ...+.. .+|.-+...-.++|+.++|...++++++.+|++..
T Consensus 416 --~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 416 --LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred --ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 3455677888999988877776666543 222222 23444444446789999999999999999999999
Q ss_pred chHhhHHHHHhcCChhHHHHHHHH
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
....+..+|+... .+.|..+-+.
T Consensus 494 ~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 494 LLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhcC-HHHHHHHhhc
Confidence 9999999998764 4666655443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-08 Score=95.71 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+....+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555566666666666666666555432 1223333444444444445554444444444332 1
Q ss_pred HhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
.+...+..+...+...|++++|.+.|++.......|. ...+..+..++...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2334455555556666666666666666655322222 234445555666667777777777
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
....+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+....
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666542 2233455666667777777777777766654 11 2244555556666667777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=99.25 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=127.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.+.++|.+.|.+.+|.+.|+.-+.. .|-..||..+-++|.+....+.|..++.+-.+. ++.++....-....+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~---- 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH---- 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH----
Confidence 3444555555555555555554443 333344444444444444444444444443332 122222222233333
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
-..++.++|.++|++..+ ..|+. ....++...|...++++-|+.+++.+.
T Consensus 301 ---------------------------eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 301 ---------------------------EAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ---------------------------HHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 333444444444444444 22222 233333334444444555555554444
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+- |+ .+.+.|+.+.-.+.-.+++|-++.-|++. ..+|+ ..+|-.|.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 32 32 23444444444444455555555444443 11232 35788887777888999999999999999999999
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.+++.|+.+-.+.|++++|..++...++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999988763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-05 Score=81.48 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=114.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
.+..|..+..+-.+.|...+|++-|-+ .-|+..|..++.++++.|.+++-..++...+++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 456788999999999999999887743 235678999999999999999999999988876 6666665 4789
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
-+|++.+++.|-++++. -|+..-...+..-|...|.++.|.-+|.. ...|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888773 46777777888889999999988887764 3567778888888888777765
Q ss_pred HHHH
Q 003868 643 VRKL 646 (790)
Q Consensus 643 ~~~~ 646 (790)
.-++
T Consensus 1242 ~aRK 1245 (1666)
T KOG0985|consen 1242 AARK 1245 (1666)
T ss_pred Hhhh
Confidence 4443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=101.42 Aligned_cols=211 Identities=19% Similarity=0.143 Sum_probs=145.3
Q ss_pred CChHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 432 GALENGRQLHAQLVHSG-YDS--SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 222 235577778888899999999998887754 367889999999999999999999
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 003868 506 LYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--P 582 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 582 (790)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988 67765 56777778888899999999999988753 444322222223345677899999988654 2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 583 FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF-------QLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 583 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
..|+. |.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...|++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332 321 1222234444333 2333333 4556677889999999999999999999999887643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=110.10 Aligned_cols=210 Identities=12% Similarity=-0.004 Sum_probs=163.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYAR---------CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN 499 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 499 (790)
+++++|.+.++++++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999988764 3345566666655542 3458899999998765 367788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 577 (790)
+++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+.+. .|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 56775 46777888999999999999999999853 4542 3333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 578 IDSLP--FKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 578 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++.- ..|+ +..+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98762 2354 4456777778889999999999999998888888777888888888888 588887777754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-05 Score=84.00 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=94.9
Q ss_pred hHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHH--HHHHH
Q 003868 14 NRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTT--LIAAY 91 (790)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~ 91 (790)
..+.+-|.....++. .+.|.+.-..++..+ +-|...+.+=+.++.+.+.+++|.++.+.-... .+++. +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e--~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE--YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchH--HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHH
Confidence 455555677777888 999999999998877 556777777888899999999999776654421 12222 46677
Q ss_pred h--cCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 003868 92 S--ASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145 (790)
Q Consensus 92 ~--~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 145 (790)
| +.+..++|...++.... -+..+-..-...+.+.|++++|+++|+.+.+++.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6 67899999999996554 4444666667788899999999999999987653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-08 Score=102.49 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCC-CCC-CCCh-hHHHHHHHHHHHCCCHHHHHHHHhhCCC-------C-
Q 003868 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTEAK-PTP-EFSL-PVNNALVTLYWKCGKVNEARDIFNQMPE-------R- 350 (790)
Q Consensus 282 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~- 350 (790)
..|...+...|...|+++.|..+++..++.-.+ .|. .+.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666888899999999999999988763110 111 1111 1223355566777777777766666542 1
Q ss_pred ---ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH-HHHHHH
Q 003868 351 ---DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDY-AFAGAI 425 (790)
Q Consensus 351 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~-t~~~ll 425 (790)
-..+++.|...|.+.|++++|... .+.|++++++ ..|. .|... -++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~------------------------~e~Al~I~~~--~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEY------------------------CERALEIYEK--LLGASHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHH------------------------HHHHHHHHHH--hhccChHHHHHHHHHHH
Confidence 123455555566666666666665 3444555544 1122 22222 345556
Q ss_pred HHHHccCChHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------CHhHH
Q 003868 426 TSCAGLGALENGRQLHAQLVHS---GYDS----SLSAGNALITMYARCGVVEAANCVFNTMPNV-----------DSVSW 487 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~---g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~ 487 (790)
..|...+.+++|..+++...+. -+.+ -..+++.|...|.+.|++++|+++|+++... ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 6677777777777777755442 1111 1234555666666666666666655544320 12234
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~ 509 (790)
+.|...|.+.+++.+|.++|.+
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHH
Confidence 4455555555555555555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-08 Score=88.29 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
....|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344567789999999999999999998 56766 4788888889999999999999999885 234456788999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 565 LCRAGKFSEAKDVIDSLPFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
+|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|...+++.++.+|+++.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998733332 347888887778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003868 641 ARVRKLMRDRGV 652 (790)
Q Consensus 641 ~~~~~~m~~~g~ 652 (790)
..+++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999876655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-07 Score=93.39 Aligned_cols=215 Identities=13% Similarity=-0.028 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 399 GEEGLKLFSQMRLEG-FKPC--DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
.+.++.-+.++.... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666666666432 2222 2345555556677777777777777777654 44567888888888889999999888
Q ss_pred HhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 476 FNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 476 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 887754 3 467788888888999999999999999988 567664322222334556789999999976553 233
Q ss_pred CChhHHHHHHHHHHhcCChHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 553 PGEDHYARFIDLLCRAGKFSEA--KDVIDS-LPF----KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A--~~~~~~-~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
|+... ..++. ...|++.++ .+.+.+ ... .| ....|..+...+...|++++|+..|+++++.+|++.
T Consensus 197 ~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 197 KEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred ccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33222 22333 334555443 322322 111 12 235789999999999999999999999999998653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.0001 Score=81.41 Aligned_cols=451 Identities=13% Similarity=0.136 Sum_probs=252.9
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---------------CChHHHHHHHHHHhcCC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---------------PDIVARTTLIAAYSASD 95 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g 95 (790)
+.....-+..|...++.-+..+.-.+..-|...-..+.-.++|+.... .|+.+.-..|.+-|+.|
T Consensus 659 ve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~ 738 (1666)
T KOG0985|consen 659 VEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTG 738 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhc
Confidence 556667777777777777777777777777777777777888887753 44445556788888888
Q ss_pred ChHHHHHHHhhCCC-----------------C------------CCCcchH--H----HHHHHHHhCCCchHHHHHHHHh
Q 003868 96 NVKLAREMFNKTPL-----------------K------------MRDTVFY--N----AMITAYSHNSNGHAAIELFRDM 140 (790)
Q Consensus 96 ~~~~A~~~~~~~~~-----------------~------------~~~~~~~--n----~li~~~~~~g~~~~A~~~~~~m 140 (790)
.+.+..++-++..- . .+|.+.| . ..|..|++.=++...-.+.-.+
T Consensus 739 QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~L 818 (1666)
T KOG0985|consen 739 QIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGAL 818 (1666)
T ss_pred cHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhh
Confidence 87777666553211 0 1122221 1 2455555554433333332222
Q ss_pred hh---------------CCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCcc
Q 003868 141 RR---------------DDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFV 204 (790)
Q Consensus 141 ~~---------------~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~ 204 (790)
.. .|.-| -..|+.-+-+..+ .... ...+..+..|. .|+.++|+|...|...-..|..
T Consensus 819 LD~dC~E~~ik~Li~~v~gq~~----~deLv~EvEkRNRLklLl--p~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 819 LDVDCSEDFIKNLILSVRGQFP----VDELVEEVEKRNRLKLLL--PWLESLIQEGS-QDPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred hcCCCcHHHHHHHHHHHhccCC----hHHHHHHHHhhhhHHHHH--HHHHHHHhccC-cchHHHhhhhheeecCCCChHH
Confidence 21 23222 2344444444443 3333 66666677775 5778899998888776322222
Q ss_pred CCCCC-HHHHHHHHccCCCCCe----eeH------HHHHHHHHhCCChh-HHHHHHHhcccCCcchhhHHHHhhhhhHH-
Q 003868 205 SSRSL-MGAARRVFDEMPERDE----LSW------TTMMTGYVKNDYLD-AAREFLDGMSENVGVAWNALISGYVHREL- 271 (790)
Q Consensus 205 ~~~g~-~~~A~~~f~~~~~~~~----~~~------~~li~~~~~~g~~~-~A~~l~~~m~~~~~~~~~~li~~~~~~~~- 271 (790)
+.+.. +-+..-+=+-...+|+ ++| ..+|..+-.+..+. .|.-+.+++ |..-|+.++.----...
T Consensus 892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~---D~~LW~~VL~e~n~~rRq 968 (1666)
T KOG0985|consen 892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS---DPDLWAKVLNEENPYRRQ 968 (1666)
T ss_pred hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc---ChHHHHHHHhccChHHHH
Confidence 11111 0000000000011111 111 22333333333222 122222222 33444444421100000
Q ss_pred ---HHHHhCcc--CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 272 ---KMLMLRIQ--LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 272 ---~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
+....+++ -|+.-.+..+.++...+-..+-.++++.++-.. +.+.-+...-|.|+-...|. +.....+..++
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--cccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 11222322 355667777888888888888888888877421 11222344445555444443 33455555565
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-------------------------CChhHHHHHHHHHHhcCChHH
Q 003868 347 MPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE-------------------------RNLLSWTVMISGLAQNGYGEE 401 (790)
Q Consensus 347 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~ 401 (790)
+..-|.. .+......++-+++|..+|++... ..+..|..+..+-.+.|...+
T Consensus 1046 LdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1046 LDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHH
Confidence 5542221 122334455666777777665421 234579999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 003868 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN 481 (790)
Q Consensus 402 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 481 (790)
|++-|-+. -|...|.-++..+.+.|.+++-..++..+++..-+|.+ -+.||-+|++.+++.+-+++.. .
T Consensus 1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---G 1191 (1666)
T ss_pred HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---C
Confidence 99877533 35678999999999999999999999888888766654 4589999999999888776653 3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
||+.-...+..-|...|.++.|.-+|.
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 444444455555555555555544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-05 Score=81.46 Aligned_cols=249 Identities=11% Similarity=0.098 Sum_probs=129.4
Q ss_pred HHHHhcCChhHHHHHhhhCCC--CChHH-HHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchH-HHHHHHHHhC-----C
Q 003868 58 DIYCKSLKLVYARTLFDEIPQ--PDIVA-RTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFY-NAMITAYSHN-----S 128 (790)
Q Consensus 58 ~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-n~li~~~~~~-----g 128 (790)
..+...|+++.|.+.++.-.. .|... .......+.+.|+.++|..++..+....|+-..| ..+..+..-. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 445677888888888877554 55444 4555666778888888888888877654444444 4444444222 2
Q ss_pred CchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCC
Q 003868 129 NGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSR 207 (790)
Q Consensus 129 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~ 207 (790)
+.+...++|+++...- |.......+.-.+.. |+ -...+........+.|++ .+++.|-..|...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~--------- 156 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP--------- 156 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh---------
Confidence 4566777888776542 433333222222221 22 111122444455555543 3445555555433
Q ss_pred CCHHHHHHHHccCC------------------CCCeeeH--HHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhh
Q 003868 208 SLMGAARRVFDEMP------------------ERDELSW--TTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYV 267 (790)
Q Consensus 208 g~~~~A~~~f~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~ 267 (790)
...+-...++..+. .|....| .-+...|-..|++++|++.+++-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a---------------- 220 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA---------------- 220 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----------------
Confidence 33333333333221 1122223 33344455566666666666643
Q ss_pred hhHHHHHHhCccCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhh
Q 003868 268 HRELKMLMLRIQLD-EFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQ 346 (790)
Q Consensus 268 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 346 (790)
....|+ +..|..-.+.+-+.|++.+|....+.... .+.. |..+.+-.+..+.++|++++|.+++..
T Consensus 221 --------I~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 221 --------IEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLA-DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred --------HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChh-hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 222343 33455555555566666666666665554 3322 455555555556666666666655555
Q ss_pred CCCC
Q 003868 347 MPER 350 (790)
Q Consensus 347 m~~~ 350 (790)
...+
T Consensus 288 Ftr~ 291 (517)
T PF12569_consen 288 FTRE 291 (517)
T ss_pred hcCC
Confidence 5443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-05 Score=75.68 Aligned_cols=129 Identities=16% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH-HHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-RFIDLLC 566 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~ 566 (790)
.++.+.+.-..++++.+-.++....- +.-|..--..+..|.+..|.+.+|.++|-.+... .+ .|..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 34444555555666666666666553 2333333344667788888888888888776642 22 2344454 4567788
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 567 RAGKFSEAKDVIDSLPFKPSAPIWEA-LLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++|+.+-|-+++-++.-..+..+... +.+-|.+.+.+--|-++|..+-.++|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888764444444433 345678888887777788777777665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=88.42 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=132.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccC
Q 003868 356 NAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA-GAITSCAGLG 432 (790)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g 432 (790)
+.|...|.+.|.+.+|.+.|+...+ +-+.||-.+-+.|.+..++..|+.+|.+-.+. .|-.+||. .....+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888889999999888887765 46778888889999999999999999887763 56666654 3555666677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+.+.+.++++...+.. +.++....++ ..+|.-.++++-|+.+|+++.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAci-------------------------------a~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACI-------------------------------AVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC-Cccceeeeee-------------------------------eeccccCCChHHHHHHHHHHHH
Confidence 7778888877777653 2233333333 3344444555555555555555
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 003868 513 EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAP 588 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 588 (790)
.|+. +..-|..+.-+|...++++-++.-|+..... -..|+ .+.|-.+.....-.|++.-|.+-|+-. ...| ...
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 5432 3334444444455555555555544444331 11121 234444444445555555555555443 1112 233
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.++.|.-.-.+.|+++.|..++..+....|+-
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 45555444455555555555555555555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-06 Score=88.80 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=170.4
Q ss_pred HHHHCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHHHcCCHHHHHHHHHHhccCCh--hH-HHHHHHHHHh-----cCC
Q 003868 330 LYWKCGKVNEARDIFNQMPE--RDLVS-WNAILSAYVSAGLIDEAKSLFEAMRERNL--LS-WTVMISGLAQ-----NGY 398 (790)
Q Consensus 330 ~~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~~-----~g~ 398 (790)
.+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..++..+.+.|+ .. |..+..+..- ...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 34556666666666655443 23333 33445566666777777777766665443 22 3333333311 123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+....+|+++...- |.......+.-.+.....+ ..+..++....+.|+++ +++.|-..|....+.+-..+++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 456666677665532 3333322222222221122 23445555666666544 45555555654444444444443
Q ss_pred cCC------------------CCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHH
Q 003868 478 TMP------------------NVDSVSW--NAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVK 536 (790)
Q Consensus 478 ~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 536 (790)
... .|....| .-+...|-..|++++|++++++.++ ..|+.+ .|..-...+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 321 1333344 5567788899999999999999999 578764 6778888999999999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CC--C----HHHHH--HHHHHHHHhCCHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF---KP--S----APIWE--ALLAGCRIHGNIDL 605 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~~--~ll~~~~~~g~~~~ 605 (790)
+|.+.++.... --.-|...=+-.+..+.|+|++++|.+++....- .| | ..+|- ....+|.+.|++..
T Consensus 246 ~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 246 EAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999885 2334556666778888999999999999877631 12 1 12443 34677889999999
Q ss_pred HHHHHHHHHhc
Q 003868 606 GIQAAEQLFQL 616 (790)
Q Consensus 606 a~~~~~~~~~~ 616 (790)
|+..+..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00013 Score=78.91 Aligned_cols=379 Identities=12% Similarity=0.058 Sum_probs=178.0
Q ss_pred CcchHHHHHH--HHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCC---------CCCc-ch
Q 003868 49 REHIINRLID--IYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLK---------MRDT-VF 116 (790)
Q Consensus 49 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~-~~ 116 (790)
|..|-..+++ .|...|+++.|.+-...+... .+|..|.+++.+..+++-|.-.+-.|... ..|. ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4555555554 455667777777776666552 45777777777777766666666555432 1111 11
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhh
Q 003868 117 YNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVY 195 (790)
Q Consensus 117 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 195 (790)
-.-...--.+.|..++|+.+|++-.+.. ..|-+..+ .|. .++. ++-+.--+..+..+-+-|..-+.
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D------LlNKlyQs---~g~w~eA~--eiAE~~DRiHLr~Tyy~yA~~Le-- 869 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD------LLNKLYQS---QGMWSEAF--EIAETKDRIHLRNTYYNYAKYLE-- 869 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHh---cccHHHHH--HHHhhccceehhhhHHHHHHHHH--
Confidence 1111112235577777777777665421 12222222 222 2221 11111111111111111111111
Q ss_pred hccCCCCccCCCCCHHHHHHHHccCCC-----------------------CCeeeHHHHHHHHHhCCChhHHHHHHHhcc
Q 003868 196 VKCVSSPFVSSRSLMGAARRVFDEMPE-----------------------RDELSWTTMMTGYVKNDYLDAAREFLDGMS 252 (790)
Q Consensus 196 ~~~~~~~~~~~~g~~~~A~~~f~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 252 (790)
. +++++.|++.|+.-.. +|...|.-...-+-..|+.+.|+.+|...+
T Consensus 870 -a---------r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 870 -A---------RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred -h---------hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 1 1566666666654321 133333333333344577777777776541
Q ss_pred cCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHH
Q 003868 253 ENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW 332 (790)
Q Consensus 253 ~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (790)
-|-++++..+-.|+.++|-++-++- | |....-.|.++|-
T Consensus 940 -------------------------------D~fs~VrI~C~qGk~~kAa~iA~es-------g---d~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 940 -------------------------------DYFSMVRIKCIQGKTDKAARIAEES-------G---DKAACYHLARMYE 978 (1416)
T ss_pred -------------------------------hhhhheeeEeeccCchHHHHHHHhc-------c---cHHHHHHHHHHhh
Confidence 2555666666677777777665442 2 4556666777788
Q ss_pred HCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-Chh-----------HHHHHHHHHHhcCChH
Q 003868 333 KCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLL-----------SWTVMISGLAQNGYGE 400 (790)
Q Consensus 333 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-----------~~~~li~~~~~~g~~~ 400 (790)
..|++.+|..+|-+.. ++...|+.+-.++ +++-+.-+..|..+ |.+ -...-+-.|-+.|.+.
T Consensus 979 n~g~v~~Av~FfTrAq-----afsnAIRlcKEnd-~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ-----AFSNAIRLCKEND-MKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHHHHHHHhcC-HHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 8888888887777643 3444444333222 22222222222111 111 0112233455666666
Q ss_pred HHHHHHHH--------HHHcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 401 EGLKLFSQ--------MRLEGFK--PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 401 ~A~~~~~~--------m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
+|+++--+ ++...+. .|...++....-+....++++|..++....+. .--+. .|+..++.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCc
Confidence 66654221 1122222 23444444455555556666666665544431 00111 12222222
Q ss_pred HHHHHHhcCCC-----CCH----hHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 471 AANCVFNTMPN-----VDS----VSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 471 ~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
-.+++-+.|.. ++. .....+...|.++|.+..|-+-|.+
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 22333333321 222 2344556677778888777666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=96.58 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=163.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
.+.|++.+|.-.|+..++.. +.+...|.-|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566666666666666653 44566677777777777776777777776654 355666677778888888889999
Q ss_pred HHHHHHHcCCCCChhhHHHHH-----------HHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 506 LYEQMLKEGILPDRITFLTVL-----------SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.++.-+.. +|... .+. ....+...+.+..++|-.+....+..+|.+++.+|.-+|--.|.+++|
T Consensus 375 ~L~~Wi~~--~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88887653 22110 000 122233345556666766665446668899999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 575 KDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 575 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+-|+.. ..+| |..+||-|...+....+.++|+..|++++++.|.-..+...|+..|...|.++||.+.+-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999986 5677 6679999999999999999999999999999999999999999999999999999998887754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-06 Score=78.29 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=113.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH
Q 003868 425 ITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA 501 (790)
Q Consensus 425 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 501 (790)
.-.|...|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..|+++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 334455555555555555555542 33444555666666666666666666665442 34455566666666777777
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 502 RAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
+|...|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+. .+-.......+.....+.|++..|..+++.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 777777776664333322 36666666666677777777777766642 222334555666666677777777766665
Q ss_pred C--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 581 L--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 581 ~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
. ...++..+.--.+..-...||.+.+-+.-.++....|..
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5 223455544445555566677766666666666666655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-05 Score=82.00 Aligned_cols=245 Identities=18% Similarity=0.141 Sum_probs=158.6
Q ss_pred CCchhHHHHHHH--hhhccCCCCccCCCCCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchh
Q 003868 182 GLFTSVLNALIS--VYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259 (790)
Q Consensus 182 ~~~~~~~~~li~--~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 259 (790)
.-|..+-.++++ .|.-- |++|.|.+-.+-+. +.+.|..|.+.+++..+++-|.-.+-.|..-
T Consensus 723 ~Cd~~TRkaml~FSfyvti---------G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~a----- 786 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTI---------GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA----- 786 (1416)
T ss_pred ccCHHHHHhhhceeEEEEe---------ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-----
Confidence 345666666664 45555 99999988877765 5678999999999999999999999988431
Q ss_pred hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHH
Q 003868 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNE 339 (790)
Q Consensus 260 ~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (790)
+.....++..-.|+ .+=.-+.-.....|-+++|+.++.+-.+ |..|=..|-..|.+++
T Consensus 787 --------RgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~e 844 (1416)
T KOG3617|consen 787 --------RGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSE 844 (1416)
T ss_pred --------hhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHH
Confidence 11111122222232 2222333334577899999999988876 3344556888999999
Q ss_pred HHHHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-----------------------CChhHHHHHHHHHHh
Q 003868 340 ARDIFNQMPER-DLVSWNAILSAYVSAGLIDEAKSLFEAMRE-----------------------RNLLSWTVMISGLAQ 395 (790)
Q Consensus 340 A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~ 395 (790)
|.++-+.-..- =..||.....-+-..++.+.|++.|++... +|...|.-....+-.
T Consensus 845 A~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES 924 (1416)
T KOG3617|consen 845 AFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES 924 (1416)
T ss_pred HHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc
Confidence 99887653321 122566666666778889999888877642 233445555555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
.|+.+.|+.+|..... |-++++..|-+|+.++|-++-++ .-|......|..+|...|++.+|...
T Consensus 925 ~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred ccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6777777777665543 34455555666777776666544 23445555677777777777777777
Q ss_pred HhcC
Q 003868 476 FNTM 479 (790)
Q Consensus 476 ~~~~ 479 (790)
|.+.
T Consensus 990 fTrA 993 (1416)
T KOG3617|consen 990 FTRA 993 (1416)
T ss_pred HHHH
Confidence 6654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00023 Score=71.22 Aligned_cols=260 Identities=11% Similarity=0.064 Sum_probs=134.6
Q ss_pred ccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhH
Q 003868 278 IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVS 354 (790)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~ 354 (790)
++-|......+.+.+...|+.+++...|+.... .++. ++.......-.+.+.|+.+.-..+...+.. .+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 444555566677777777777777777777654 2211 111111222223455666655555444432 33445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 431 (790)
|-.-...+....+++.|+.+-++..+. ++..|-.-...+.+.|+.++|.-.|+..+... +-+-..|..++.+|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555556666677777888777777653 34455555567777888888888887776531 23445677777777777
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHh-cCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHhcCChHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALI-TMYAR-CGVVEAANCVFNTMPN--VD-SVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~y~~-~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
|.+.+|.-.-....+. ++.+..+.+.+. ..+.- ..--++|.++++.... |+ ....+.+...+...|..++++.+
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7766665554444332 122222222211 11111 1112344444444332 21 12233344444445555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+++-.. ..||..--+.|.+.+...+.+++|.+.|....
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555444 34555544555555555555555555554444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00013 Score=71.36 Aligned_cols=393 Identities=12% Similarity=0.085 Sum_probs=233.4
Q ss_pred CCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh
Q 003868 208 SLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT 284 (790)
Q Consensus 208 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t 284 (790)
|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..+-..-+ -++..
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------------------------k~pL~ 123 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP---------------------------KTPLC 123 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC---------------------------CChHH
Confidence 888888888875543 356667777777777788888887766541 12333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWNA-ILSA 361 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~ 361 (790)
...++...-+.++-++-..++..+.. ...---+|..+....-.+.+|++++.++.. |+-...|. |.-.
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC 194 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC 194 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence 44455555677777777777766654 112233445554455567888888888764 34344443 3345
Q ss_pred HHHcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----cCC
Q 003868 362 YVSAGLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-----LGA 433 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~g~ 433 (790)
|.+..-++-+.+++..-.. | +.++-|....-..+.=....|..-..++...+-.. ..+ +.-.++ -.+
T Consensus 195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f---~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPF---IEYLCRHNLVVFRN 269 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chh---HHHHHHcCeEEEeC
Confidence 6666666666666554433 2 23445544444444322333333334443332111 111 111111 123
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-------ChHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG-------NGARAIEL 506 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~ 506 (790)
-+.|.+++--+.+. -|. .--.|+-.|.+.+++.+|..+.++....++.-|-.-.-.++..| ...-|.+.
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 35566655555443 222 23356777999999999999999887655544433233333333 24445555
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 003868 507 YEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-FK 584 (790)
Q Consensus 507 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 584 (790)
|+-.-+.+..-|.+ .-.++.+++.-..++++.+.+++.+.. |-...|...| .+..+++..|.+.+|+++|-... .+
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 55444555544443 344555666667789999999998876 3333444444 57889999999999999998773 12
Q ss_pred -CCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcC-CCCC-cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 585 -PSAPIWEALLAGC-RIHGNIDLGIQAAEQLFQLM-PHHA-GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 585 -p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|..+|.+++.-| ...+..+.|..++ +..+ |.+. .....+++-|.+++.+--|.+.|..+...
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 4667787777666 5557777766554 4443 3222 23446678899999999899999988763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=77.63 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=159.4
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCCHHHHHHHHHHhccCChhHHHHH---HHHHHhcCChH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL---SAYVSAGLIDEAKSLFEAMRERNLLSWTVM---ISGLAQNGYGE 400 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~ 400 (790)
|...+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.-|.+..+..+..+.+- ...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 344455667777777777777776666666554 356667777777777776665444333333 34567777788
Q ss_pred HHHHHHHHHHHcCCCCCH--------------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 401 EGLKLFSQMRLEGFKPCD--------------YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~--------------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
+|..-|+..++.....+. ......+..+...|+...++.....+++.. +-|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 888777777665321110 112233444556677777777777766653 45666677777777777
Q ss_pred CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-H---HHH---H------HHHH
Q 003868 467 GVVEAANCVFNTMP---NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-F---LTV---L------SACN 530 (790)
Q Consensus 467 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---l------~a~~ 530 (790)
|++..|..-++... ..+....--+-..+-..|+.+.++...++-++ +.||... | -.| . ....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765555443 34555555555666667777777777777666 5676631 1 111 0 0112
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNI 603 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 603 (790)
..+++.++.+-.+...+. .|. ...+..+-..+...|++.+|++.-.+. .+.|| +.++---..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233444444444433321 222 112223333444555555555544443 33343 33444444555555555
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 003868 604 DLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~ 621 (790)
+.|+.-|+++.+.+++|.
T Consensus 358 D~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHhcCcccH
Confidence 566666666665555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00012 Score=77.62 Aligned_cols=353 Identities=14% Similarity=0.113 Sum_probs=213.9
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 003868 291 ACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 367 (790)
.+...|+.++|.......++ .++. +.+.|..+.-.+-...++++|.+.|..... .|...|.-+.---++.++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr----~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLR----NDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhhcccchHHHHHHHHHHhc----cCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 34556788888877777665 3333 556777777777777888888888877553 344555555555566667
Q ss_pred HHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHccCChHHH
Q 003868 368 IDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG-FKPCDYAFAGAI------TSCAGLGALENG 437 (790)
Q Consensus 368 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~a 437 (790)
++.....-....+. .-..|...+.++.-.|+...|..++++..+.. -.|+...+.-.. ......|.++.|
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 66666665555543 33577777788888888888888888877654 245555444322 223456667777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHH-HHHHhcCChHHHH-HHH------
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMI-AALGQHGNGARAI-ELY------ 507 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~------ 507 (790)
.+.+...... +......-..-.+.+.+.+++++|..++..... ||..-|.-.. .++.+-.+.-+++ .+|
T Consensus 205 le~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 205 LEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 6666554332 111222333445667778888888888887765 4444443332 2222222222222 333
Q ss_pred ----------------------------HHHHHcCCCCChhhHHHHHHHHHccCCH---H-HHHHHHHHcccC--C----
Q 003868 508 ----------------------------EQMLKEGILPDRITFLTVLSACNHAGLV---K-EGRRYFETMHGP--Y---- 549 (790)
Q Consensus 508 ----------------------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~---~-~a~~~~~~~~~~--~---- 549 (790)
..+.+.|+.|-... +.+-|-..... + -+..+...+... +
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 33344443332222 22222211111 1 122222222211 0
Q ss_pred ---CCCCChhHH--HHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 550 ---GIPPGEDHY--ARFIDLLCRAGKFSEAKDVIDSL-PFKPSAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 550 ---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.-+|+...| -.++..+-+.|+++.|+..++.. .-.|+.+ .|..=.+.+...|+++.|...++++.+++-.|-.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 015555544 46778889999999999999886 4456554 3445557778889999999999999999877744
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.-.--++-..++++.++|.++.....+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 444566666789999999999999887765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=87.47 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH--- 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 531 (790)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHh
Confidence 3333445566677888887777765 4555666667778888888888888888876 3333 344444444432
Q ss_pred -cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH-HHHH
Q 003868 532 -AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI-DLGI 607 (790)
Q Consensus 532 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~ 607 (790)
.+.+.+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 23567777777776653 3456666666666666666666666666553 2233 334444555555555555 4555
Q ss_pred HHHHHHHhcCCCC
Q 003868 608 QAAEQLFQLMPHH 620 (790)
Q Consensus 608 ~~~~~~~~~~p~~ 620 (790)
+...++....|++
T Consensus 257 ~~l~qL~~~~p~h 269 (290)
T PF04733_consen 257 RYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCCC
Confidence 5666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00021 Score=77.37 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFID 563 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 563 (790)
.|......+.+.++.++|...+.+... +.|-. ..|......+...|..++|.+.|..... +.|+ +..-.++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 466667778888888999888777766 44443 4566666677788999999999988763 4554 567788899
Q ss_pred HHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 564 LLCRAGKFSEAKD--VIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 564 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
++.+.|+..-|.. ++..+ ...| +...|-.+...+.+.|+.+.|-..|+-++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 77665 5555 6678999999999999999999999999999887763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00031 Score=72.81 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS-SLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+.....+++++..-..--..+|...++...+..-+..|+.+|.++.+.+..+ .++++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555443222223456667777777777777888888877776655 6777777777776 366667777776
Q ss_pred cCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--
Q 003868 478 TMPN--VD-SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRRYFETMHGPYG-- 550 (790)
Q Consensus 478 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 550 (790)
.-.+ +| +.--...+.-+...|+-..|..+|++....++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5432 23 333344555666666667777777777766555555 3666666666666777666666655544332
Q ss_pred CCCChhHHHHHHHHHHhcCCh
Q 003868 551 IPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~ 571 (790)
..+...+-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 233333344455555444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-07 Score=90.56 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=141.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC---CHhHHHH-HHHHH
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-NV---DSVSWNA-MIAAL 494 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~-li~~~ 494 (790)
+...+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-+++.. ++ +..++.. ....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555555666544322 2222222 4555444444443333345555555554433 22 1222222 23445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH---HHHHHHHHHhcCCh
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH---YARFIDLLCRAGKF 571 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~ 571 (790)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-...+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 6679999999988642 3445666778899999999999999999985 3344322 22333333334579
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh-hHHHHHHHHHH
Q 003868 572 SEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW-DDAARVRKLMR 648 (790)
Q Consensus 572 ~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 648 (790)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999998 34578888899999999999999999999999999999999999999999999998 66788888877
Q ss_pred h
Q 003868 649 D 649 (790)
Q Consensus 649 ~ 649 (790)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0002 Score=79.37 Aligned_cols=559 Identities=13% Similarity=0.027 Sum_probs=287.4
Q ss_pred hhHHHHHhhhCCCCC---hHHHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhh
Q 003868 66 LVYARTLFDEIPQPD---IVARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141 (790)
Q Consensus 66 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 141 (790)
...|...|-+..+.| ...|..|-.-|+..-+...|.+.|+...+. ..+...+......|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 444544444443322 236777878887777888888888876654 4566678888888888888888888732222
Q ss_pred hCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHH----hCC-CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHH
Q 003868 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVK----SGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216 (790)
Q Consensus 142 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~ 216 (790)
+.. ..-...++.+-++..- -++. ..|+.+.. ... +.|...|..|..+|..+ |++..|.++
T Consensus 554 qka-~a~~~k~nW~~rG~yy---Lea~--n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s---------Gry~~AlKv 618 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYY---LEAH--NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES---------GRYSHALKV 618 (1238)
T ss_pred hhc-hHHHHHhhhhhccccc---cCcc--chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc---------CceehHHHh
Confidence 111 0011112222211111 1111 22222211 122 34667888999999999 999999999
Q ss_pred HccCCCCCeeeHHH---HHHHHHhCCChhHHHHHHHhcccC---CcchhhHHHHhhhhhHHHHHHhCccC--------Ch
Q 003868 217 FDEMPERDELSWTT---MMTGYVKNDYLDAAREFLDGMSEN---VGVAWNALISGYVHRELKMLMLRIQL--------DE 282 (790)
Q Consensus 217 f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~li~~~~~~~~~m~~~~~~p--------~~ 282 (790)
|++...-++.+|.. ....-+.+|.+.+|++.+...... -...-+.+-..+++........|+.- ..
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 98776544444333 233456689999999988765221 00000111111111111001111110 01
Q ss_pred hhHHHHHHHH-Hcc-CChH---HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCH---H---HHHHHHhhCCC--
Q 003868 283 FTYTSVISAC-ANS-GLFR---LGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV---N---EARDIFNQMPE-- 349 (790)
Q Consensus 283 ~t~~~ll~~~-~~~-~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~f~~m~~-- 349 (790)
..+...+.-- +.. -.+. .+..++.+.. ++ .|+......|..-.-+.+.. | -|.+.+-.-..
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-----~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~ 772 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEE-----PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA 772 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-----cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh
Confidence 1111111100 000 0000 1111111111 11 11222222221111111211 1 01111111000
Q ss_pred CChhHHHHHHHHHHHc--------CCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 350 RDLVSWNAILSAYVSA--------GLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
.+..+|..++..|.+. .+...|...+.+... .+..+||.|.-. ...|.+.-|...|-+-.... +-+.
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 2355676666655551 222356666665553 456777777655 55566776766665554432 3455
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-----CC---CCHhHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM-----PN---VDSVSWNAM 490 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l 490 (790)
.+|..+--.+.+..+++.|.+.+....... +.+..-+-...-.....|+.-++..+|..- .+ ++..-|-..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 667666667777888888888887766542 223333333333334456676777776642 11 445555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--------CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH--
Q 003868 491 IAALGQHGNGARAIELYEQMLKE--------GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-- 559 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 559 (790)
..-..++|+.++-+..-++.-.. +-.|+ ...|........+.+.+..|.+...+...-....-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55556677665554443332211 12343 46777777777777777777776655432111123344444
Q ss_pred --HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc---chHhhHHHHHhc
Q 003868 560 --RFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG---TYVLLSNMYANL 634 (790)
Q Consensus 560 --~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 634 (790)
.+...++..|.++.|..-+...+..-+..+-.+-+.. .-.|+++.+.+.|++++.+..++.. ....++......
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 3344566778888887777666545455444443333 4467899999999999987555443 233444555567
Q ss_pred CChhHHHHHHHHHHh
Q 003868 635 GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 g~~~~a~~~~~~m~~ 649 (790)
+.-+.|...+-+...
T Consensus 1089 ~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS 1103 (1238)
T ss_pred ccchHHHHHHHHHHH
Confidence 777888877666654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-05 Score=70.91 Aligned_cols=383 Identities=14% Similarity=0.089 Sum_probs=237.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHHHH
Q 003868 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHA 306 (790)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 306 (790)
+++.+..+.+..+++.|++++..-.+ -.| +....+.+-.+|....++..|-..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E------------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYe 68 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE------------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYE 68 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh------------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888999999999986522 224 55667777777888889999999999
Q ss_pred HHHHhcCCCCCCCChhHHH-HHHHHHHHCCCHHHHHHHHhhCCCC-ChhHHHHHHH--HHHHcCCHHHHHHHHHHhc-cC
Q 003868 307 YLLRTEAKPTPEFSLPVNN-ALVTLYWKCGKVNEARDIFNQMPER-DLVSWNAILS--AYVSAGLIDEAKSLFEAMR-ER 381 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~-~~ 381 (790)
++-. .- |...-|. --...+.+.+.+.+|.++...|.+. +...-..-+. ..-+.+++..+..+.++.+ +.
T Consensus 69 QL~q----l~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 69 QLGQ----LH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN 142 (459)
T ss_pred HHHh----hC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC
Confidence 8865 22 2222221 1234456788999999999998873 3222222222 2345688888999999998 46
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC---------
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--------- 451 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~--------- 451 (790)
+..+.+.......+.|++++|++-|+...+- |..| ...|+..+ +..+.++.+.|.+...+++++|+..
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 6777788888888999999999999998775 4544 55666655 4556789999999999999876542
Q ss_pred ----ch--------hHHHHHH-------HHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHH
Q 003868 452 ----SL--------SAGNALI-------TMYARCGVVEAANCVFNTMPN-----VDSVSWNAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 452 ----~~--------~~~~~li-------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 507 (790)
|+ ..-++++ ..+.+.|+.+.|.+.+-.|+. .|++|...+.-.= ..+++.+..+-+
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 11 1123333 345678999999999999985 4777776553322 244555555555
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCC
Q 003868 508 EQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC-RAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 508 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p 585 (790)
.-+.+ +.|- ..||..++-.|++..-++-|-.++-+-....-.-.+...|+ |++++. -.-..++|++-++.+.-.-
T Consensus 300 qFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l 376 (459)
T KOG4340|consen 300 QFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML 376 (459)
T ss_pred HHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55555 3453 36999999999999999998888765322100011233333 333333 3345566665554431000
Q ss_pred CHHHHHHHHHH-HHHhCCHH----HHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAG-CRIHGNID----LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~-~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
....-..-+.. -.++.+-+ .+++-++..+++.- .....-++.|.+..++.-+.++|..-.+
T Consensus 377 ~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 377 TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000000000 01122222 22333444444321 2344556777788888888888887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.8e-05 Score=79.73 Aligned_cols=195 Identities=13% Similarity=-0.030 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-LPDR--ITFLTVLSACN 530 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~ 530 (790)
..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|+..+++.....- .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666666666666665543 2344556666666667777777777666655311 1121 12344555666
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHh
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHY-A--RFIDLLCRAGKFSEAKDV---IDS---L-PFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~ 600 (790)
..|++++|..+++.........+..... + .+...+...|..+.+.+. ... . +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6777777777776654321111111111 1 222233333432222222 111 1 1111112223455566777
Q ss_pred CCHHHHHHHHHHHHhcCCC---------CCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 601 GNIDLGIQAAEQLFQLMPH---------HAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
|+.+.|...++.+....-. ........+.++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888777653211 23455677788889999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-05 Score=80.20 Aligned_cols=389 Identities=14% Similarity=0.075 Sum_probs=207.2
Q ss_pred CCHHHHHHHHccC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh-h
Q 003868 208 SLMGAARRVFDEM---PERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE-F 283 (790)
Q Consensus 208 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~-~ 283 (790)
|+++.|...|-+- .++|-+.|..-..+|+..|++++|++=-.+ ...+.|+. .
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k------------------------~~~l~p~w~k 71 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATK------------------------TRRLNPDWAK 71 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHH------------------------HHhcCCchhh
Confidence 9999999999744 345888999999999999999999876553 34566764 5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHH-HHHHhhCCCCChhHHHHH----
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEA-RDIFNQMPERDLVSWNAI---- 358 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~f~~m~~~~~~~~~~l---- 358 (790)
.|+-.-.++...|++++|..-|..-++ .. +.+...++.|.+++ ..+.+ .+.|. .| ..|..+
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~----~d-~~n~~L~~gl~~a~----~~~~~~~~~~~---~p--~~~~~l~~~p 137 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLE----KD-PSNKQLKTGLAQAY----LEDYAADQLFT---KP--YFHEKLANLP 137 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhh----cC-CchHHHHHhHHHhh----hHHHHhhhhcc---Cc--HHHHHhhcCh
Confidence 688888888999999999999998886 43 34777888888888 11211 11111 11 111111
Q ss_pred -HHHHHHcCCHHHHHHHHHHhccCChhH---HHHHHHHHHhcCChHH-HHHHH------------HHHHHcC--------
Q 003868 359 -LSAYVSAGLIDEAKSLFEAMRERNLLS---WTVMISGLAQNGYGEE-GLKLF------------SQMRLEG-------- 413 (790)
Q Consensus 359 -i~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~-A~~~~------------~~m~~~g-------- 413 (790)
.+.+...-.+..-++.+..-+.. +-. ...++.+.......+. ....- ..+....
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~-l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTS-LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHh-hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 11111111111111111111100 000 0000000000000000 00000 0000000
Q ss_pred ---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH------
Q 003868 414 ---FKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDS------ 484 (790)
Q Consensus 414 ---~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------ 484 (790)
.+--..-...+.++..+..+++.+.+-+...+... .+..-++....+|...|....+...-+...+...
T Consensus 217 e~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 00001123445566666677777777777777664 5555666677777777777666655554333211
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHH
Q 003868 485 ----VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYA 559 (790)
Q Consensus 485 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~ 559 (790)
.+...+..+|.+.++++.|+..|.+.......||..+ +....+++........ -+.|.. .-..
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 1122234466667788888888888666545544321 1122233333322221 112221 1111
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
.=...+.+.|++..|...+.++ ...| |...|..-..+|.+-|++..|+.-.+..++++|+....|..=+-++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 1244455666666666666654 2234 4455666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHh
Q 003868 638 DDAARVRKLMRD 649 (790)
Q Consensus 638 ~~a~~~~~~m~~ 649 (790)
++|.+.|.+..+
T Consensus 443 dkAleay~eale 454 (539)
T KOG0548|consen 443 DKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHh
Confidence 666666666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0021 Score=77.76 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCC---ch
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGF---KP--CDYAFAGAITSCAGLGALENGRQLHAQLVHS----GYDS---SL 453 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~~---~~ 453 (790)
++.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+.+.... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34444455556666666666665543210 11 1123334445556677777777766665442 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHH-
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN------V--DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDRITFL- 523 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~- 523 (790)
..+..+...+...|++++|...+++... + ....+..+...+...|++++|.+.+++.....-. .....+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344455566667888888777765532 1 1233444566777889999999888887542111 1111111
Q ss_pred ----HHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HH
Q 003868 524 ----TVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-AP 588 (790)
Q Consensus 524 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 588 (790)
..+..+...|+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1123345578899999888776542 11111 111345667788889999988888765 22222 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
+...+..++...|+.++|...+++++++....
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 55666777888999999999999999885443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.8e-05 Score=70.51 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=200.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC--C-ChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHH-H
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ--P-DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNA-M 120 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~-l 120 (790)
|+....--+++.+-.+.+..++.+|.+++....+ | +....+.|-..|-...++..|-..++++...-|...-|.. -
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4444444567777777888899999998887766 3 4455666777788888899998888877654444444432 2
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCC
Q 003868 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVS 200 (790)
Q Consensus 121 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~ 200 (790)
...+.+.+.+.+|+.+...|... |+ |..-|. ++...+ + |..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~------L~~~~l----------qLqaAI-k----------------Yse--- 125 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PA------LHSRVL----------QLQAAI-K----------------YSE--- 125 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HH------HHHHHH----------HHHHHH-h----------------ccc---
Confidence 34566778888899988888642 11 111111 111111 1 111
Q ss_pred CCccCCCCCHHHHHHHHccCC-CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCcc
Q 003868 201 SPFVSSRSLMGAARRVFDEMP-ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQ 279 (790)
Q Consensus 201 ~~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~ 279 (790)
+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+... .-.|..
T Consensus 126 -------~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl---------------------qvsGyq 177 (459)
T KOG4340|consen 126 -------GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL---------------------QVSGYQ 177 (459)
T ss_pred -------ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH---------------------hhcCCC
Confidence 88888999999988 4566666666666778999999999999873 234554
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHH
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAIL 359 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 359 (790)
| ...|+..+-.| +.++.+.|.+...+++.+|...-++..+-.-+-.+++-.-.+-...+..- -+..+|.-.
T Consensus 178 p-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa-------l~eAfNLKa 248 (459)
T KOG4340|consen 178 P-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA-------LVEAFNLKA 248 (459)
T ss_pred c-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------HHHHhhhhh
Confidence 4 45677666544 56889999999999998665444443332222222110000000000000 122455555
Q ss_pred HHHHHcCCHHHHHHHHHHhccC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 360 SAYVSAGLIDEAKSLFEAMRER-----NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
..+.+.|+++.|.+.+..|+.+ |++|...+.-.= ..+++.+..+-++-+...+ +-...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 6677889999999999888854 566665554322 2344555555555555443 23456888888888888888
Q ss_pred HHHHHHHHH
Q 003868 435 ENGRQLHAQ 443 (790)
Q Consensus 435 ~~a~~i~~~ 443 (790)
+.|-.++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888777765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00017 Score=87.13 Aligned_cols=384 Identities=13% Similarity=0.018 Sum_probs=235.4
Q ss_pred chhhHHHHhhhhhHHHHHHhCccCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC-ChhHHHHHHHHHHH
Q 003868 257 VAWNALISGYVHRELKMLMLRIQLDE--FTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF-SLPVNNALVTLYWK 333 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 333 (790)
..|+.++..++.... ....|+. .........+...|++..+....... +... -.............
T Consensus 318 yr~H~L~r~~l~~~l----~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~ 386 (903)
T PRK04841 318 FRYHPLFASFLRHRC----QWELAQELPELHRAAAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFN 386 (903)
T ss_pred EehhHHHHHHHHHHH----HhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHh
Confidence 445666666555531 1111221 22333444556667766655433221 1110 01111222334556
Q ss_pred CCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc----CC---h-----hHHHHHHHHHHhcC
Q 003868 334 CGKVNEARDIFNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE----RN---L-----LSWTVMISGLAQNG 397 (790)
Q Consensus 334 ~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~~g 397 (790)
.|+++.+...++.++. .+..........+...|++++|...+....+ .+ . .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 7888888888888752 2233333445556778999999988876632 11 1 12223344566799
Q ss_pred ChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCC
Q 003868 398 YGEEGLKLFSQMRLEGFKPCD----YAFAGAITSCAGLGALENGRQLHAQLVHS----GY-DSSLSAGNALITMYARCGV 468 (790)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~~y~~~g~ 468 (790)
++++|...+++....-...+. .....+...+...|++++|...+...... |. .........+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999987763112222 23444555677899999999999887753 21 1112345566778889999
Q ss_pred HHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhhHHHHHHHHHccC
Q 003868 469 VEAANCVFNTMPN-------V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEG--ILPD--RITFLTVLSACNHAG 533 (790)
Q Consensus 469 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g 533 (790)
++.|...+++... + ....+..+...+...|++++|...+++..... ..|. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999998876532 1 12234455566777899999999999876531 1222 224444556777899
Q ss_pred CHHHHHHHHHHcccCCCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHhCC
Q 003868 534 LVKEGRRYFETMHGPYGIPPGEDHY-----ARFIDLLCRAGKFSEAKDVIDSLPFK--PSA----PIWEALLAGCRIHGN 602 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~ 602 (790)
+.++|.+.+..+............+ ......+...|+.+.|.+.+...... ... ..+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999999988774311111111111 11224456689999999998775311 111 124456677888899
Q ss_pred HHHHHHHHHHHHhcCC------CCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 603 IDLGIQAAEQLFQLMP------HHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 603 ~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
.++|...++++++... ....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999887521 123467788999999999999999999997643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00057 Score=72.58 Aligned_cols=355 Identities=15% Similarity=0.156 Sum_probs=240.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSA 361 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 361 (790)
|..++..| ..+++..+.+..+.+++.- +....+.....-.+...|+-++|....+.-.. ++.+.|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~-----~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKF-----PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhC-----CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 44444444 4577788888888887621 11222333333345677899999988877665 466789999888
Q ss_pred HHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChHHH
Q 003868 362 YVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP-CDYAFAGAITSCAGLGALENG 437 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 437 (790)
+-...++++|++.|..... .|...|.-+.-.-.+.++++.....-.+..+. .| ....|..+..+..-.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998764 46678888888888889999888887777764 34 345677777778888999999
Q ss_pred HHHHHHHHHhC-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--CHhHH-HHHHHHHHhcCChHHHHHHH
Q 003868 438 RQLHAQLVHSG-YDSSLSAGNALI------TMYARCGVVEAANCVFNTMPNV--DSVSW-NAMIAALGQHGNGARAIELY 507 (790)
Q Consensus 438 ~~i~~~~~~~g-~~~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~~~ 507 (790)
..+.++..+.. -.|+...+.-.. ....+.|..++|.+.+...... |-..+ ......+.+.++.++|..+|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999998875 345555443332 3345778889998888776542 32322 34456678899999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHH-ccCCHHHHH-HHHHHcccCC---------------------------------CCC
Q 003868 508 EQMLKEGILPDRITFLTVLSACN-HAGLVKEGR-RYFETMHGPY---------------------------------GIP 552 (790)
Q Consensus 508 ~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~~~~~~---------------------------------~~~ 552 (790)
..++. -.||..-|...+..+. +.-+.-++. .+|....+.+ |++
T Consensus 243 ~~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99998 5788876665555443 222222222 4444433221 222
Q ss_pred CChhHHHHHHHHHHhcCChHH----HHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSE----AKDVIDSL-P------------FKPSAPIWEA--LLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+ ++..+...|-.-...+- +..+...+ + .+|....|.. +...+-..|+++.|+...+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 12222222222111111 11222222 1 2567777765 455577889999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
++.-|.-...|..-+.++...|.+++|..++++..+...
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999998888899999999999999999999999876433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00019 Score=76.39 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=141.6
Q ss_pred HHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC
Q 003868 361 AYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLG 432 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g 432 (790)
.+...|++++|.+.+++..+. +...+.. ...+.. .+....+.+.+.. ..+..|+. .....+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 455567777777776665542 2233332 222222 3344444444443 11223333 33344555677788
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC--HhHHHHHHHHHHhcCChHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VD--SVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~ 505 (790)
++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+ ++ ...|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888764 44566777888888888899988888887654 12 2345567788888999999999
Q ss_pred HHHHHHHcCCCCCh-hhH-H--HHHHHHHccCCHHHHHHH---HHHcccC-CCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 506 LYEQMLKEGILPDR-ITF-L--TVLSACNHAGLVKEGRRY---FETMHGP-YGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
+|++.......+.. ... . .++.-+...|..+.+.+. ....... .+ ..........+.++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988653211121 111 1 222333334432222222 1111110 01 11112223566677889999999998
Q ss_pred HHhCC--CCC---CH----HHHHHHH--HHHHHhCCHHHHHHHHHHHHhc
Q 003868 578 IDSLP--FKP---SA----PIWEALL--AGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 578 ~~~~~--~~p---~~----~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
++.+. .+. .. .+...++ -++...|+.+.|.+.+..++..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87761 111 11 1222223 3346789999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.9e-06 Score=80.38 Aligned_cols=179 Identities=13% Similarity=0.041 Sum_probs=116.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----h
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI----T 521 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 521 (790)
....+..+...|.+.|++++|...|+++.. |+ . ..|..+..++.+.|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 445566667777777788887777776643 22 1 3556667777777788888888877776 345432 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 522 FLTVLSACNHA--------GLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 522 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444445443 5677777777777643 2322 222221111 0011100 001124
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667888999999999999999977654 68899999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-06 Score=92.84 Aligned_cols=201 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN--------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+- .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 45566777888888888999999999887753 13457888888888888888999999999873 323356
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGC 597 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 597 (790)
|..|...|.+.+..++|-++++.|.++++ .....|...++.+.+..+-++|..++++. ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999765 67788999999999999999999998875 33333 33445555566
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
.++||.+++..+|+.++...|.....|+.+++.-.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998877653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-06 Score=75.39 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 003868 505 ELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 505 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 583 (790)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 45554 34455666777777777777777664 23345666777777777777777777777765 33
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 584 KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 584 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.| +...|..+..++...|+.++|+..++++++..|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 55667777777777788888888888888888887777766665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-05 Score=75.88 Aligned_cols=146 Identities=10% Similarity=0.074 Sum_probs=110.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
+..|...|+++.+....+++.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457777777765444322221 11 0 12235666777777777665 446678889999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 571 FSEAKDVIDSL-PFKP-SAPIWEALLAGC-RIHGN--IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 571 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999886 4455 566777777764 66677 5999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 003868 646 LMRDR 650 (790)
Q Consensus 646 ~m~~~ 650 (790)
++.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 99764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00064 Score=75.57 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=108.3
Q ss_pred hHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHH
Q 003868 97 VKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHC 174 (790)
Q Consensus 97 ~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~ 174 (790)
...|...|-+..+. ..=...|..|-..|..-.+...|.+.|+...+-. .-|......+...+++..+ +.+. .+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~--~I-- 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF--EI-- 548 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH--HH--
Confidence 56666666544432 1223469999999998889999999999987542 2244556666777777766 5544 33
Q ss_pred HHHHhCCCCch--hHHH--HHHHhhhccCCCCccCCCCCHHHHHHHHccCC---CCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 175 TVVKSGTGLFT--SVLN--ALISVYVKCVSSPFVSSRSLMGAARRVFDEMP---ERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 175 ~~~~~g~~~~~--~~~~--~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
....+-.... ..+| ..--.|.+. ++...|..-|+.-. ..|...|..+..+|...|++..|+++
T Consensus 549 -~l~~~qka~a~~~k~nW~~rG~yyLea---------~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 549 -CLRAAQKAPAFACKENWVQRGPYYLEA---------HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred -HHHHhhhchHHHHHhhhhhccccccCc---------cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 1111111111 1111 111123333 77778888887554 34888999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHH--HHccCChHHHHHHHHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISA--CANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~ 310 (790)
|.+. .-+.|+. +|...-.+ -+..|...++...++.++.
T Consensus 619 F~kA------------------------s~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 619 FTKA------------------------SLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhh------------------------HhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9854 3445543 23322222 3456788888887777765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-07 Score=57.91 Aligned_cols=33 Identities=42% Similarity=0.599 Sum_probs=21.7
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHhhhCC
Q 003868 45 GFKPREHIINRLIDIYCKSLKLVYARTLFDEIP 77 (790)
Q Consensus 45 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 77 (790)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-07 Score=57.34 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66677777777777777777777777777766
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0004 Score=72.27 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=111.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLV 535 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 535 (790)
+..+|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|+.. -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34467777888888888877543 12111 1222344555555544443 445542 222235667788999
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
..|+..+.++++. .+-|...|....-+|.+.|.+.+|++=-+.. ...|+. ..|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998873 4667888999999999999999888765554 334443 34544455666678999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhc
Q 003868 614 FQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~ 634 (790)
++.+|++......+..++...
T Consensus 453 le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHh
Confidence 999999977777776666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=70.27 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=90.7
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+|+...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444442 3444 3556788899999999999999986 4445 67889999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 618 PHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+++.++..++.++...|++++|.+.++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-05 Score=81.88 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=163.7
Q ss_pred HHHHHCCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHH
Q 003868 329 TLYWKCGKVNEARDIFNQMPER---DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 329 ~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 402 (790)
.-+.+.|++.+|.-.|+..... +...|..|......+++-..|+..+.+..+- |..+.-.|.-.|...|.-.+|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467888999999999887653 5678999999999999999999999988874 457888888899999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 403 LKLFSQMRLEGFK--------PCDYAFAGAITSCAGLGALENGRQLHAQLV-HSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 403 ~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
++.+++-+....+ ++..+-.. ..+.....+....++|-++. ..+...|..++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999987653210 00000000 11122223344455554444 4465688889999999999999999999
Q ss_pred HHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 474 CVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 474 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
..|+.... | |...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99998764 3 788999999999999999999999999999 899885 55556678999999999998876653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00012 Score=74.91 Aligned_cols=162 Identities=9% Similarity=0.050 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHH
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGNG--ARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
+++++..++++.+ .+...|+.....+.+.|+. ++++.+++++.+ ..|+. .+|.....++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555544432 2344455444444444442 556666666666 34433 46666666666667777777777
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHh-CCCCC-CHHHHHHHHHHHHHh----CCHHHHHHH
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRA---GKF----SEAKDVIDS-LPFKP-SAPIWEALLAGCRIH----GNIDLGIQA 609 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 609 (790)
+++.+. -+-+...|+.....+.+. |.+ +++.++..+ +...| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 777652 233445555544444433 222 345565533 34445 567888888888774 345678888
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
+.+++...|.++.+...|+++|++.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888899988999999999864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=69.95 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.+..-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445666778899999999999876 3445 56789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 003868 633 NLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 695 (790)
..|+.+.|++-|+...... ..+|+..++..+.+...+.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886421 135677777777777666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0013 Score=64.34 Aligned_cols=283 Identities=10% Similarity=0.066 Sum_probs=192.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHH
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVS-WNAILSAYV 363 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~ 363 (790)
-+-+.+...|.+..|..-+...+. .+ +.+-.++-.-...|...|+-..|..=|.++.+ ||-.. --.-...+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 344455566777777777666664 22 22333333445677778887777777776654 44221 111224577
Q ss_pred HcCCHHHHHHHHHHhccCCh------h----------HH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003868 364 SAGLIDEAKSLFEAMRERNL------L----------SW--TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~~~------~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 425 (790)
++|.+++|..-|+...+.++ . .| ...+..+...|+...|+.....+++- .+-|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHH
Confidence 88999999888888875432 1 12 23455666788999999999988874 245666777777
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHh----HHHHH---------
Q 003868 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSV----SWNAM--------- 490 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~l--------- 490 (790)
.+|...|.+..|+.=++.+.+..- .++....-+-..+...|+.+.++...++..+ ||-. .|..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 888899999988887777776643 3445555677788888999998888887765 3221 12211
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh--hh---HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHH
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR--IT---FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDL 564 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 564 (790)
+......+++.++++..+...+. .|.. ++ +..+-.++...|.+.+|++...++.. +.|+ +.++.--.++
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHH
Confidence 22345678899999999888874 4552 33 34445566778999999999999884 4565 8888888899
Q ss_pred HHhcCChHHHHHHHHhC
Q 003868 565 LCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~ 581 (790)
|.-...+++|+.-|+..
T Consensus 351 ~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 99999999999998886
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-05 Score=73.36 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 003868 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEA 592 (790)
Q Consensus 515 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 592 (790)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|++. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456543335566677777888888887777554 33445566667888899999999999999887 44568889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
+..+|.+.|+.+.|...|.+++++.|+++..++.|+..|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988865433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00016 Score=82.86 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=153.8
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-Ch-hHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE--------RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NL-LSWTVM 389 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~l 389 (790)
+...|-..|......++++.|++++++... .-.-.|.++++.-...|.-+...++|++..+- |+ ..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 455666666667777777777777766553 12236777777666667667777777777653 32 467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-SSLSAGNALITMYARCGV 468 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~ 468 (790)
...|.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|+.++.++.+.--. ....+..-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 78888888888888888888765 3455667777888888888888888888888775211 134455667778889999
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCC
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGL 534 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~ 534 (790)
.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+..=...|+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999998764 356789999999999999999999999999988887653 44444433333343
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.1e-05 Score=73.81 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYD-S-SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSW 487 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 487 (790)
.....+......+...|+++.|...++.+.+..-. + ....+..+...|.+.|++++|...|+++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777778889999999999999999876421 1 124667889999999999999999998864 21 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH
Q 003868 488 NAMIAALGQH--------GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA 559 (790)
Q Consensus 488 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 559 (790)
..+..++.+. |+.++|.+.|+++.+ ..|+..-....+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~~~------~~---------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---LRN------RL---------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---HHH------HH---------HHHHH
Confidence 5555666554 789999999999998 46765322211111100 000 00 01123
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 618 (790)
.+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999888776 2223 346788999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0001 Score=83.17 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=139.8
Q ss_pred HHHHHHHHHccCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH----HHHHHHHhcCCCCCHhHHHHHHHHHH
Q 003868 421 FAGAITSCAGLGALENG-RQLHAQLVHSGYDSSLSAGNALITMYARCGVV----EAANCVFNTMPNVDSVSWNAMIAALG 495 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~ 495 (790)
+..+=.+.+..|.-+++ .+++.++.+ ++...+..... .++..+.+... .++..+-.|.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~ 97 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALE 97 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33333455666766554 556666543 23333322222 22333333322 25778888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
+.|.+++|+.+++...+ +.||.. ....+..++.+.+.+++|...+++... .-+-+......+..++.+.|++++|
T Consensus 98 ~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999 789885 667778889999999999999999886 4455667888899999999999999
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 575 KDVIDSLP-FKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 575 ~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..+
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999873 3444 67899999999999999999999999999866554555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00045 Score=71.23 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=90.9
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|.+++|+..++.+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 44566788888888888775 34555666667778888888888888888876 44565 5677778888888888888
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
|+..++.....+|+|+..|..|+.+|...|+..++..-+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888887777777666653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00039 Score=79.29 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
.+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444455555555555555555555443 2444455555555555 555555555554442 333
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAE 611 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 611 (790)
.+++..+.++|..+.. ..+.+...+-.+.... ....+...-..+|--+-.-|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555543 1122222221111111 1111112223344444455566666666777777
Q ss_pred HHHhcCCCCCcchHhhHHHHH
Q 003868 612 QLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 612 ~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777666666666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.4e-05 Score=79.79 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=129.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677888888899999999888864 4677778888888888888888888777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS-LPFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.....--+++|+++++....+ .-..+.....+.++++++.+.|+. +.+.| -..+|-.+..+..+.++...
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777788888887765431 111122222345666666666654 33333 34566666666666667777
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
|...|...+.++|++...|+.++-+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777776666665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00028 Score=79.75 Aligned_cols=143 Identities=14% Similarity=0.124 Sum_probs=117.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FL 523 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 523 (790)
.++.+...+-.|.......|..++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4567788899999999999999999999998875 4 456777888999999999999999999998 6788865 55
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALL 594 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 594 (790)
.+..++.+.|++++|..+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 556678899999999999999986 33445788999999999999999999999987 2334444454444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00018 Score=68.46 Aligned_cols=154 Identities=8% Similarity=0.113 Sum_probs=113.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEG 538 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 538 (790)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..+ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456777777776655443322221 012235667888888888777 35544 5788888889999999999
Q ss_pred HHHHHHcccCCCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 539 RRYFETMHGPYGIPPGEDHYARFIDLL-CRAGK--FSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
...|+...+ -.+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998885 2344677888888864 67777 48999999886 4455 5678888888999999999999999999
Q ss_pred HhcCCCCCcchH
Q 003868 614 FQLMPHHAGTYV 625 (790)
Q Consensus 614 ~~~~p~~~~~~~ 625 (790)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.2e-06 Score=54.33 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCh
Q 003868 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDN 149 (790)
Q Consensus 115 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 149 (790)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=79.05 Aligned_cols=211 Identities=16% Similarity=0.127 Sum_probs=133.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.+...+...|-..+|+.+|++... +..++.+|...|+..+|..+..+..+ -+|+...|..|.+.....-
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 455666667777777777776542 44566677777777777777766666 3667777777777766666
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
-+++|.++++....+--..|+.+ ...+++++++.+.|+.-.+ +.|-. .+|..+..+..+.++++.|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 67777777766543311222211 2235777777777776655 34433 466666666667777777777777666
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
. +-+-+...|+.+-.+|.+.|+..+|...+++. .. ..+..+|...+-....-|.++.|++++.++.++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3 33334567777777777777777777777665 21 223345666666666777777777777776655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00034 Score=66.37 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 567 (790)
.+-..+...|+.+....+..+... ..|.. ......+......|++.+|...|++... .-++|...|+.+.-+|.+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 344455556666666665555433 12222 2333355666667777777777777665 456667777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 568 AGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 568 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.|++++|..-|.+. .+.| ++...+.|.-.+.-.||.+.|..++..+....+.+...-..|.-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666554 3333 445566777777777777777777777777777676777777777777777777766543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-05 Score=67.55 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777788888888888888776 3334 5677888888888889999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003868 632 ANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~~ 650 (790)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.1e-06 Score=52.94 Aligned_cols=35 Identities=40% Similarity=0.723 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 519 (790)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00098 Score=68.84 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHh
Q 003868 490 MIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL-SACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCR 567 (790)
Q Consensus 490 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 567 (790)
..-.+...|..++|+..++.+.. -.||...|..+. ..+...++.++|.+.++.+... .|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHh
Confidence 33445567999999999999988 578887666554 5788999999999999999863 555 5666788899999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 568 AGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 568 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.|++.+|..+++.. ..+-|+..|..|..+|...|+..++... .+..|.-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 99999999999886 3345778999999999999998876654 4556788999999999999
Q ss_pred HHHhCC
Q 003868 646 LMRDRG 651 (790)
Q Consensus 646 ~m~~~g 651 (790)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=75.81 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
..+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566677788899999999998864 355 3445778888888888999888776 2233 66677777788899
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.++++.|+.+++++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=51.88 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCC
Q 003868 114 TVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKP 147 (790)
Q Consensus 114 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 147 (790)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0008 Score=68.90 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=132.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCC-
Q 003868 461 TMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHG-NGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGL- 534 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 534 (790)
..+.+.+..++|...+..+.+. +..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3344556677777777766542 4456666666666667 579999999999984 5554 355555445555665
Q ss_pred -HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh---CCH----H
Q 003868 535 -VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH---GNI----D 604 (790)
Q Consensus 535 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~ 604 (790)
.+++..+++.+.+ .-+-+...|....-++.+.|++++|++.++++ ... .|...|+.....+... |.. +
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888875 34556788888888999999999999999987 333 3667888776666544 222 4
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHHhc----CChhHHHHHHHHHHh
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANL----GRWDDAARVRKLMRD 649 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 649 (790)
..+....++++.+|+|..+|..+..++... ++..+|.++..+..+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 677788899999999999999999999873 345667777766544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.3e-05 Score=50.38 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 517 (790)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=59.20 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH----AGLV 535 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 535 (790)
...|.+.|++++|++........+....+ ...+.+..+.+-|.+.+++|++- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34455566666666665553322322222 22334455566666666666651 234455555555432 3346
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHG-NIDLGIQAAEQ 612 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 612 (790)
.+|.-+|++|.+ ..+|+..+.+...-+....|++++|..++++. ....++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 666666666665 34566666666666666666666666666654 11223444444443333333 33444455556
Q ss_pred HHhcCCCC
Q 003868 613 LFQLMPHH 620 (790)
Q Consensus 613 ~~~~~p~~ 620 (790)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 66666655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=62.25 Aligned_cols=113 Identities=10% Similarity=0.107 Sum_probs=86.1
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 003868 506 LYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF 583 (790)
Q Consensus 506 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 583 (790)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45654 34556666777888899998888888752 3446778888888888899999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 584 KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 584 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.| +...|..+...+...|+.+.|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888889999999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0031 Score=59.91 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH----HH
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL----LC 566 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~ 566 (790)
...|...|++++|++..+... ..+. ...=...+.+..+.+-|.+.++.|.+- .+..+.+.|..+ ..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEA--AALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345677888888888776521 1111 112223345666778888888888742 233444444444 34
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH-H
Q 003868 567 RAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR-V 643 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~ 643 (790)
-.+...+|.-+|++|. ..|+..+.+-....+...|++++|+.+++.++..+++++.+...++..-...|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4557888888888883 567777778788888888888888888888888888888888877777777777665543 3
Q ss_pred HHHHH
Q 003868 644 RKLMR 648 (790)
Q Consensus 644 ~~~m~ 648 (790)
..+++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.1 Score=58.32 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CHhHHHHHHHHH
Q 003868 422 AGAITSCAGLGALE---NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV----DSVSWNAMIAAL 494 (790)
Q Consensus 422 ~~ll~~~~~~g~~~---~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 494 (790)
+.++..+-+.++.. +|+-+++.-... -+.|..+--.||..|.-.|-...|.++|..+.-+ |...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 34566677777665 344444443333 2445566677889999999999999999987632 333332 22344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHH---HHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRR---YFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
...|++..+...++...+- ..-+. .+-..+..|| +.|.+.+..+ .=+++... .-.....+-+..++.++..++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777776665441 01111 1222222333 3344443333 22233221 111122344567778888899
Q ss_pred hHHHHHHHHhCCCCC
Q 003868 571 FSEAKDVIDSLPFKP 585 (790)
Q Consensus 571 ~~~A~~~~~~~~~~p 585 (790)
.++-...+..|.++|
T Consensus 595 ~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHHhccccCc
Confidence 888888888875443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00064 Score=71.02 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcc
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHA 532 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 532 (790)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .|+. ..+......|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344455666666778888888888887766666666777777778888888888888763 4433 3444445557788
Q ss_pred CCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003868 533 GLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 533 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 585 (790)
++.+.|..+.+++.+ ..| +..+|..|...|.+.|++++|+-.++.+|.-+
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888888875 344 45688888888888888888888888887443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0057 Score=70.11 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN 499 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 499 (790)
.+..+..+|.+.|+.+++..+++++++.. +.++.+.|-+...|+.. ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44444445555555555555555555544 44455555555555555 555555554432 222444455
Q ss_pred hHHHHHHHHHHHHcCCCCChh---------------------hHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 500 GARAIELYEQMLKEGILPDRI---------------------TFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~---------------------t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+..+.++|.++.. ..|+.+ ++..+-..|...++++++..+++.+.+
T Consensus 185 ~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 185 YVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred chHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 5555555555555 334332 222333344455556666666666553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.068 Score=54.71 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 535 (790)
.+..+.-+...|+...|.++-.+..-||-.-|...+.+++..|+|++-.++... +-.++.|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344456667789999999998888889999999999999999999877765432 23458899999999999999
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGC 597 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 597 (790)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99999888632 2456788899999999877755542 444444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=61.49 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHhcCCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHccCCH
Q 003868 466 CGVVEAANCVFNTMPN--------VDS-VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS-ACNHAGLV 535 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 535 (790)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887653 222 23444555666788999999999998875 3 66643222222 24557899
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
++|.++++.+.++ -+.|..+|..-+-++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3666778887777777888877888776654 35678999999999999999999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcC---ChhHHHHHHHHHHh
Q 003868 614 FQLMPHHAGTYVLLSNMYANLG---RWDDAARVRKLMRD 649 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 649 (790)
+-..|-++..+..++..+.-.| +.+-|.+++.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999887766 45667788887765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.4e-05 Score=47.79 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 003868 115 VFYNAMITAYSHNSNGHAAIELFRDMRRDDV 145 (790)
Q Consensus 115 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 145 (790)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00044 Score=56.70 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888775 3334 34667777888888899999999999999988888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 003868 636 RWDDAARVRKLMRD 649 (790)
Q Consensus 636 ~~~~a~~~~~~m~~ 649 (790)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=56.02 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC-ChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG-RWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 649 (790)
++.+|..+...+...|++++|+..|+++++.+|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998764
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0059 Score=57.67 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=128.5
Q ss_pred CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 003868 449 YDSSL-SAGNALITMYARCGVVEAANCVFNTMPN--VD---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF 522 (790)
Q Consensus 449 ~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 522 (790)
..++. .+|..++-+...+|+.+.|...++.+.. |. +.-..+ .-+-..|++++|+++++...+.. +-|.+++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 34443 4566667777788999999999988654 22 222222 22445789999999999999864 4455677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH 600 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 600 (790)
-.-+...-..|.--+|++-+....+ .+..|.+.|.-+.+.|...|+++.|.--++++ -..| ++..+..+...+...
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7767677777888888888888876 57889999999999999999999999999997 3455 445556666655433
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 601 ---GNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 601 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+.+.+.+.|.+++++.|.+...+..+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 477899999999999999665544444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0027 Score=57.22 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh--hHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE--DHYAR 560 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 560 (790)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33344444 356666666666666663 2333 12333444556666666666666666653 211111 12233
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 612 (790)
|...+...|++++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666666665542111 223334444445555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=59.65 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSA----PIWEALLA 595 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~ 595 (790)
|..++.+. ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+... ..||. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47888999888999887533221 12344456688899999999999999872 22443 24556777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.+...|++++|+..++.. ...+-.+..+..++++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999763 233345567889999999999999999999864
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.2e-05 Score=46.53 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGI 515 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 515 (790)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.6e-05 Score=60.02 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHH
Q 003868 568 AGKFSEAKDVIDSL----PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643 (790)
Q Consensus 568 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (790)
.|++++|+.+++++ +..++...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666676666665 2112444566677777777777777777777 666666666666778888888888888887
Q ss_pred HHH
Q 003868 644 RKL 646 (790)
Q Consensus 644 ~~~ 646 (790)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00099 Score=57.70 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHhhHH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVLLSN 629 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 629 (790)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555666666666666554 11222 2344455666666666666666666666666554 344566666
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003868 630 MYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0013 Score=68.98 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
+...|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555554443 2222 333444444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 003868 643 VRKLMR 648 (790)
Q Consensus 643 ~~~~m~ 648 (790)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=56.51 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=65.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLA 595 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 595 (790)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44445555556666666666666654211111 1234555666777777777777777665 22222 456777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888875543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00028 Score=53.41 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|.++++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888888888888888888888887754
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00076 Score=67.51 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=95.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHH---cccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCCHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFET---MHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-------PF-KPSAP 588 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 588 (790)
.|..|...|.-.|+++.|+..++. +.+.||-... ...+..|...+.-.|+++.|.+.++.. +. .-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566666667778899999887664 2233444332 356778888999999999999988754 21 22455
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQL------MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..+|.++|....+++.|+.++.+=+.+ .-....++..|+++|...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7788999999999999999998875443 123457899999999999999999988776643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.25 Score=52.14 Aligned_cols=424 Identities=11% Similarity=0.142 Sum_probs=245.3
Q ss_pred CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcch
Q 003868 182 GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER---DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVA 258 (790)
Q Consensus 182 ~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 258 (790)
+-|...|+.||.-+.. .-+++++..++++..+ ....|..-|.+-....+++...++|.+-..
T Consensus 17 P~di~sw~~lire~qt----------~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv----- 81 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----------QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV----- 81 (656)
T ss_pred CccHHHHHHHHHHHcc----------CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----
Confidence 4567778888876654 6789999999988753 667899999999999999999999997522
Q ss_pred hhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc-cCChHH----HHHHHHHHHHhcCCCCCCC-ChhHHHHHHHH--
Q 003868 259 WNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN-SGLFRL----GKQVHAYLLRTEAKPTPEF-SLPVNNALVTL-- 330 (790)
Q Consensus 259 ~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~----a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~-- 330 (790)
.- .+...|...|+--.+ .++... ..+.++..+.. .|.++ +...|+..++.
T Consensus 82 -----------------kv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k---ig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 82 -----------------KV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEK---IGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred -----------------HH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH---hccCcccchhHHHHHHHHH
Confidence 11 223333333333221 122222 22333333332 23221 23345555443
Q ss_pred -------HHHCCCHHHHHHHHhhCCC-C---------ChhHHHHHHHHH-------HHcCCHHHHHHHHHHhcc------
Q 003868 331 -------YWKCGKVNEARDIFNQMPE-R---------DLVSWNAILSAY-------VSAGLIDEAKSLFEAMRE------ 380 (790)
Q Consensus 331 -------~~~~g~~~~A~~~f~~m~~-~---------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~------ 380 (790)
|....+++..++++.++.. | |-..|..=|+.. -+...+..|.++++++..
T Consensus 140 ~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~ 219 (656)
T KOG1914|consen 140 GVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLN 219 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhc
Confidence 3344467777888888764 1 222222222211 112334455555555431
Q ss_pred CC---------------hhHHHHHHHHHHhcCCh--------HHHHHHHHH-HHHcCCCCCHHHHH-HHH----HHHHcc
Q 003868 381 RN---------------LLSWTVMISGLAQNGYG--------EEGLKLFSQ-MRLEGFKPCDYAFA-GAI----TSCAGL 431 (790)
Q Consensus 381 ~~---------------~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~ 431 (790)
.+ +..|-.+|..=..++.- ....-.+++ |.-.+..|+..-.. ..+ +.+...
T Consensus 220 r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 220 RNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHh
Confidence 00 12355555433222211 111222222 23334455443211 111 123333
Q ss_pred CC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC----CCHhHHHHHHHHHHhc
Q 003868 432 GA-------LENGRQLHAQLVHSGYDSSLSAGNALITMYARCG---VVEAANCVFNTMPN----VDSVSWNAMIAALGQH 497 (790)
Q Consensus 432 g~-------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 497 (790)
|+ -+++..+++..+..-...+..+|.++.+.--..- ..+.....+++... .-..+|-.+++.-.+.
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~ 379 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA 379 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh
Confidence 43 3455666666655544445555555544322211 24444455554432 2234677778888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 003868 498 GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
.-...|..+|.+..+.+..+-. ..+.+++. |..+++.+-|.++|+.=.+.+|- +...-.+.++-+...++-..|..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHH
Confidence 8899999999999999888844 45555555 44568999999999987765443 44555688899999999999999
Q ss_pred HHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC----cchHhhHHHHHhcCChhHHHHHHH
Q 003868 577 VIDSLP---FKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA----GTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 577 ~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
+|++.- +.|+ ..+|..++.--..-||...+.++-++.....|.+. ..-..+.+-|.=.+.+..-..-++
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 999872 3343 46899999999999999999999998887766321 223455556665555543333333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0067 Score=66.62 Aligned_cols=63 Identities=25% Similarity=0.229 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..++.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455554444455666666666666666666 345666666666666666666666666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=59.93 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|+++.|+..++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666677777777777777654 11221 3567788888888899999999999999988888888888888
Q ss_pred HHHhcCC
Q 003868 630 MYANLGR 636 (790)
Q Consensus 630 ~~~~~g~ 636 (790)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=59.94 Aligned_cols=94 Identities=12% Similarity=-0.042 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|....++..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556677777888889999999988876 22222 347888999999999999999999999999999988888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 003868 629 NMYA-------NLGRWDDAARVRKLM 647 (790)
Q Consensus 629 ~~~~-------~~g~~~~a~~~~~~m 647 (790)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888777666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=63.00 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=67.5
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 606 (790)
..+.+++++|+..|.++++ -.+-|...|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455667777777777664 22334555666667777777777777665554 44554 35788888888888888888
Q ss_pred HHHHHHHHhcCCCCCcchHhhHH
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
++.|+++++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 88888888888888644444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0053 Score=62.14 Aligned_cols=133 Identities=14% Similarity=0.255 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA-CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999988532 2233444444443 33456777799999998874 5667788889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.+.+.|+.+.|..+|++. ..-|. ..+|...+..=.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999886 22233 3589999999999999999999999999998875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0058 Score=54.42 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=75.7
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSLP-F-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
.--+...|++++|..+|+-+- . .-+..-|..|...|...++++.|+..|..+..+.++|+..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557899999999888651 2 23566788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0057 Score=61.77 Aligned_cols=264 Identities=12% Similarity=0.019 Sum_probs=158.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCh
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGAL 434 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 434 (790)
-..+.+...+..|+..+....+ .+..-|..-...+...|++++|+--.+.-.+ ++|.. .+..-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHH
Confidence 3455566666677766666554 2344566666666666666666655544433 22221 1233333333333444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHH-HHHHHhcCChHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VDSVSWNAM-IAALGQHGNGARAIELYE 508 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 508 (790)
.+|.+.++ +...| ....|...++.... |.-.+|-.+ ..++...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44443333 00000 11112222222211 222344433 245566888888888777
Q ss_pred HHHHcCCCCChhhHHHHHH--HHHccCCHHHHHHHHHHcccCCCCCCChhHHH-------------HHHHHHHhcCChHH
Q 003868 509 QMLKEGILPDRITFLTVLS--ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA-------------RFIDLLCRAGKFSE 573 (790)
Q Consensus 509 ~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~~ 573 (790)
..++. .++.. +..+++ ++...++.+.|...|++... ..|+...-. .=.....+.|++.+
T Consensus 194 ~ilkl--d~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKL--DATNA-EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhc--ccchh-HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 76663 33321 222222 34456788888888888663 344432211 11234678999999
Q ss_pred HHHHHHhC-CCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 574 AKDVIDSL-PFK-----PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 574 A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
|.+.+.+. .+. |+...|........+.|+.++|+...+++++++|.-...|..-++++...++|++|.+.+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 444 445566666667788899999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 003868 648 RDR 650 (790)
Q Consensus 648 ~~~ 650 (790)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=51.49 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 618 (790)
.+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444445555555544442 1112 223455555556666666666666666655544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.54 Score=52.89 Aligned_cols=508 Identities=13% Similarity=0.086 Sum_probs=246.0
Q ss_pred cCChhHHHHHhhhCCC--CChHHHHHHHHHH--hcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHH
Q 003868 63 SLKLVYARTLFDEIPQ--PDIVARTTLIAAY--SASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELF 137 (790)
Q Consensus 63 ~~~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~ 137 (790)
.+++..|.+....+.+ ||. .|...+.++ .+.|+.++|..+++..... ..|..|..++-..|.+.+..++|..+|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4555666555555443 443 344555554 5788999999888876554 357778888889999999999999999
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHH
Q 003868 138 RDMRRDDVKPDNFTFTSVLSALALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRV 216 (790)
Q Consensus 138 ~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~ 216 (790)
++... ..|+......++.++.+.++ ..-. ..|.++
T Consensus 101 e~~~~--~~P~eell~~lFmayvR~~~yk~qQ------------------------------------------kaa~~L 136 (932)
T KOG2053|consen 101 ERANQ--KYPSEELLYHLFMAYVREKSYKKQQ------------------------------------------KAALQL 136 (932)
T ss_pred HHHHh--hCCcHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHH
Confidence 98875 46777777777777777655 2111 123333
Q ss_pred HccCCCCCeeeHHHHHHHHHh-CCCh---------hHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHH
Q 003868 217 FDEMPERDELSWTTMMTGYVK-NDYL---------DAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT 286 (790)
Q Consensus 217 f~~~~~~~~~~~~~li~~~~~-~g~~---------~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~ 286 (790)
++..+.+--.-|+.+ +.+.+ .... .-|.+.++.+.+ ..|-.-+..-..
T Consensus 137 yK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~---------------------~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 137 YKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLE---------------------KKGKIESEAEII 194 (932)
T ss_pred HHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhc---------------------cCCccchHHHHH
Confidence 333333222223221 11111 1111 123334444321 112111222233
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA- 365 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~- 365 (790)
.-+..+...|..++|..++..-... .-...+...-+--++.+.+.+++.+..++-.++..++..-|...+..+.+.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~---~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klL 271 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAE---KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLL 271 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 3344455678899999888333221 333345556677788999999998877766665542222144444332211
Q ss_pred ---------------CCHHHHHHHHHHhccC-ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCCCH--------
Q 003868 366 ---------------GLIDEAKSLFEAMRER-NLLSWTVMISG---LAQNGYGEEGLKLFSQMRLEGFKPCD-------- 418 (790)
Q Consensus 366 ---------------g~~~~A~~~~~~m~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~-------- 418 (790)
+..+...+...+.... .--.|-+-+.. +-.-|+.++++..|-+- -|-+|--
T Consensus 272 e~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl 349 (932)
T KOG2053|consen 272 ELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYL 349 (932)
T ss_pred HhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhh
Confidence 1112222222222211 11223333333 33457777766554322 2223311
Q ss_pred -----HHHHHHHHHHHccC-ChHHHHHHHHH---HHH----hC----CCCch--hHHHHHHHHHHhcCCHHHHHHHHh-c
Q 003868 419 -----YAFAGAITSCAGLG-ALENGRQLHAQ---LVH----SG----YDSSL--SAGNALITMYARCGVVEAANCVFN-T 478 (790)
Q Consensus 419 -----~t~~~ll~~~~~~g-~~~~a~~i~~~---~~~----~g----~~~~~--~~~~~li~~y~~~g~~~~A~~~~~-~ 478 (790)
--...++..+.... +.....+.+.+ ..+ .| ++.|. ..+..++-.|++. .+-...+.. +
T Consensus 350 ~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g--ls~~K~ll~TE 427 (932)
T KOG2053|consen 350 GHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG--LSLSKDLLPTE 427 (932)
T ss_pred ccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--ccccccccccc
Confidence 11122333322211 11111111111 000 01 11110 0111122222211 000000000 0
Q ss_pred CCCCC---HhHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC
Q 003868 479 MPNVD---SVSWNAMIAALGQHGNGA---RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP 552 (790)
Q Consensus 479 ~~~~~---~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 552 (790)
+..-+ .-+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..+|..|+-.|-+..|.+.|..+.-+ .+.
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ 505 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQ 505 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-Hhh
Confidence 00001 123567788888887765 344444443332 1234456677888888889999999998888654 555
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CCcchH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYV 625 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~ 625 (790)
.|..-|- +...+...|++..|...+...- ...+. .+-. ++..-.++|.+.+-.+...---.++-. -..+-+
T Consensus 506 ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~ 583 (932)
T KOG2053|consen 506 TDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVEN 583 (932)
T ss_pred hccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543332 3344556777777776665531 00011 1111 222233556655444332211111111 122334
Q ss_pred hhHHHHHhcCChhHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.........++.++-.+.+..|+
T Consensus 584 ~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 584 LQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhCCcHHHHHHHHhccc
Confidence 66777778888888888888776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.31 Score=50.02 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL 434 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 434 (790)
.+..|.-+...|+...|.++-.+..-++-..|...+.+|+..+++++-..+... +-.+..|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444455555555555555555555555566666666666666655543321 11235666777777777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
.+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665541 12456788888888888866533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0038 Score=65.61 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=62.3
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 606 (790)
+...|++++|+.+|+++.+ ..+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445566666666665554 22233455556666666666666666666654 3334 445666677777777777777
Q ss_pred HHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
+..++++++++|+++.....+..+..
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777777777777666655544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.3 Score=49.47 Aligned_cols=271 Identities=19% Similarity=0.188 Sum_probs=175.6
Q ss_pred cCCHHHHHHHHHHhc---cCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCChHHH
Q 003868 365 AGLIDEAKSLFEAMR---ERNLLSWTVMISGL--AQNGYGEEGLKLFSQMRLEGFKPCDY--AFAGAITSCAGLGALENG 437 (790)
Q Consensus 365 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 437 (790)
.|+-..|.++-.+.. ..|....-.++.+- .-.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344445554444332 22333333333332 3367788888888888752 2221 233444445577888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHH
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP-----NVDSV--SWNAMIAALGQ---HGNGARAIELY 507 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 507 (790)
+++-+..-..- +.-.-...+++...+..|+++.|+++.+.-. ++++. .-..|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766553 2234566788888999999999999988554 24432 22233332221 34566777766
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH--HH--HHHHhCC
Q 003868 508 EQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE--AK--DVIDSLP 582 (790)
Q Consensus 508 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~--~~~~~~~ 582 (790)
.+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+-.. .. +-++.|
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl- 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL- 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc-
Confidence 66666 788875 4445567889999999999999999754 66666543333 345554322 11 123333
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc-CChhHHHHHHHHHHh
Q 003868 583 FKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL-GRWDDAARVRKLMRD 649 (790)
Q Consensus 583 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 649 (790)
+| +.....++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+.+..+
T Consensus 325 -k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 -KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45 45566777888889999999999999999999877 7899999988655 999999999888765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00086 Score=64.99 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=78.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
..-+.+.+++++|...|.+. .+.| |++.|..=..+|.+.|.++.|.+..+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34467889999999999886 6666 566677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999998765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0068 Score=56.49 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=87.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYAR 560 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 560 (790)
....+..+...+...|++++|...|++..+....|+ ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566677777788888888888888876432222 246777777888888888888888887752 2234556666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766654333221 122677888999999988887 5555555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.018 Score=53.45 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 44566667777778888888888888876422221 136667777777888888888888777642 22233445555
Q ss_pred HHHHH
Q 003868 562 IDLLC 566 (790)
Q Consensus 562 i~~~~ 566 (790)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00051 Score=52.52 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=45.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999887764
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=49.52 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999998886 4445 556888899999999999999999999999999874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.045 Score=55.63 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----h-hhHHHHHHHHHccCCHHHHHHHHHHcccC-CCCCCC--hh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-----R-ITFLTVLSACNHAGLVKEGRRYFETMHGP-YGIPPG--ED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 556 (790)
.+..+...+.+.|++++|.++|++....-...+ . ..|...+-++...|++..|.+.|+..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 445567778888999999999988876433222 1 12334444666788899999988887643 133333 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 003868 557 HYARFIDLLCR--AGKFSEAKDVIDSLP 582 (790)
Q Consensus 557 ~~~~li~~~~~--~g~~~~A~~~~~~~~ 582 (790)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44456666643 345677777777764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0094 Score=62.71 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhH
Q 003868 413 GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN----VDSVS 486 (790)
Q Consensus 413 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 486 (790)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667778888888888888888888888777765 3323334556899999999999999988876554 79999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA 532 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 532 (790)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888888888888888777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0048 Score=60.36 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH---GNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
.+-|.+.|-.|...|.+.|+++.|...|.+. .+. +++..+..+..++... .+..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4667899999999999999999999999876 333 4566777777776443 3557899999999999999999999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 657 (790)
.|+..+...|++.+|...|+.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999865544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0016 Score=50.52 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999998753
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.065 Score=54.48 Aligned_cols=151 Identities=15% Similarity=0.240 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHhcc----CC-----hhHHHHHHHHHH
Q 003868 325 NALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSA-GLIDEAKSLFEAMRE----RN-----LLSWTVMISGLA 394 (790)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~ 394 (790)
...++.|.+.|+...|-+.+.. +...|-.. |++++|.+.|++..+ .+ ...+..+...+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3344567777877777655443 44556666 788888888776653 11 135666777888
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCc--hhHHHHHHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFK-----PCDY-AFAGAITSCAGLGALENGRQLHAQLVHS--GYDSS--LSAGNALITMYA 464 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~--~~~~~~li~~y~ 464 (790)
+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++..... ++..+ ..+...|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887654322 1121 2233334555667787887777776644 33322 345556666665
Q ss_pred hc--CCHHHHHHHHhcCCCCCHhH
Q 003868 465 RC--GVVEAANCVFNTMPNVDSVS 486 (790)
Q Consensus 465 ~~--g~~~~A~~~~~~~~~~~~~~ 486 (790)
.. ..+++|..-|+.+.+.|..-
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---HHH
T ss_pred hCCHHHHHHHHHHHcccCccHHHH
Confidence 42 35667777777777665443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00038 Score=44.31 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=55.70 Aligned_cols=232 Identities=16% Similarity=0.196 Sum_probs=108.6
Q ss_pred cCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---------
Q 003868 279 QLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--------- 349 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------- 349 (790)
.|-...+.+-+..+...|.+++|.++- .+.....-|..|..-....=+++-|++.+-+..+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~ia----------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~E 622 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIA----------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISE 622 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccc----------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHH
Confidence 344445555556666777777776542 2222233344444433344444444444443321
Q ss_pred ------CChhHH-HHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 350 ------RDLVSW-NAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 350 ------~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
+..+.- -.+...++-.|.+.+|-++|. ++|.-..|+++|.+|+.-.
T Consensus 623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD--------- 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD--------- 675 (1081)
T ss_pred HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH---------
Confidence 111111 112234455566555555544 3455666777776665321
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 003868 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 502 (790)
...-+...|.-++-..+.+.-.+- ..++.--.+-..++...|+.++|..+. +.+|-.+-
T Consensus 676 -~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 676 -YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred -HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 122333444444444333322111 001101123344555566666665432 33343444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 503 AIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+.++-+++-. .+..+...+..-+-+...+.-|-++|.+|-. ...++++....+++++|..+-++.|
T Consensus 735 lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 735 LIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 4444333322 1223333333334445556666777776643 2356666777777777777777764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=57.76 Aligned_cols=138 Identities=9% Similarity=0.122 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS-CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666777777777776432 2222233322222 33346666788888887776 566777888888888
Q ss_pred HhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPN--V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVL 526 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 526 (790)
.+.|+.+.|+.+|++... + ....|...+.--.+.|+.+.+.++.+++.+ ..|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 888888888888887764 2 234788888888888888888888888887 455544433333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0017 Score=52.07 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHH
Q 003868 497 HGNGARAIELYEQMLKEGI-LPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 574 (790)
.|+++.|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677788888888777422 11334455567777777777777777776 2 1222 223333456667777777777
Q ss_pred HHHHHh
Q 003868 575 KDVIDS 580 (790)
Q Consensus 575 ~~~~~~ 580 (790)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.11 Score=46.93 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHH
Q 003868 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-FKP---SAPIW 590 (790)
Q Consensus 515 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 590 (790)
..|....-..|..+....|+..+|...|++...- -+.-|....-.+..+....+++.+|...+++.. ..| .+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777777888888888888888888887762 334566667777778888888888888887752 112 12234
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+...|+++.|+..|+.++.-.|+- ..-......+.+.|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556778888899999999999998887754 5566677788899988888876666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=61.84 Aligned_cols=142 Identities=17% Similarity=0.061 Sum_probs=105.5
Q ss_pred CCCCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003868 479 MPNVDSVSWNAMIAALGQ--HG---NGARAIELYEQMLKEGILPDRI-TFLTVLSACNHA--------GLVKEGRRYFET 544 (790)
Q Consensus 479 ~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~ 544 (790)
....|...|...+.+... .+ ....|..+|++..+ ..|+.. .+..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 334688999999888654 22 37799999999999 688874 455544444321 123445555554
Q ss_pred cccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 545 MHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 545 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.......+.+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3332123445577888877777889999999999987 56788889999999999999999999999999999999974
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.14 Score=48.87 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH-----HH
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA-----LI 460 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~-----li 460 (790)
.+.++..+.-.|.+.-.+.++.+.++...+.+......+.+.-.+.|+.+.|...++...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445555555666777888888888776666777777888888888888888888887776533333333333 33
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTV 525 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 525 (790)
..|.-.++...|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-+++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 445667788888888887775 3455555444444456889999999999988 56666554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.19 Score=53.97 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
|.+.+|-++|.+ +|.-.+|+++|..|
T Consensus 646 gKF~EAAklFk~------------------~G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 646 GKFHEAAKLFKR------------------SGHENRALEMYTDL 671 (1081)
T ss_pred hhHHHHHHHHHH------------------cCchhhHHHHHHHH
Confidence 778888887754 67777888888777
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.021 Score=47.01 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLG--------ALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556778899999999999998 889999999998877543 2345667888888888888888888
Q ss_pred HHHHHHHh
Q 003868 458 ALITMYAR 465 (790)
Q Consensus 458 ~li~~y~~ 465 (790)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=50.16 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=91.0
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcc
Q 003868 549 YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGT 623 (790)
Q Consensus 549 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 623 (790)
..+.|++..--.|...+.+.|+..||...|++. .+..|......+.++....++...|...++++.+-.|. .+..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356788888889999999999999999999986 45678888999999999999999999999999999876 6778
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...++..|...|++.+|..-|+...+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 889999999999999999999988764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.18 Score=52.18 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPNV---D----SVSWNAMIAALGQ---HGNGARAIELYEQMLKEGILPDRITFLTVLSA 528 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 528 (790)
|+-.|-...+++...++++.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334466666666666666666542 1 1111122334444 67788888888776655566677777766665
Q ss_pred HHc---------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH----HHHH---H----hC---CCCC
Q 003868 529 CNH---------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA----KDVI---D----SL---PFKP 585 (790)
Q Consensus 529 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~----~~---~~~p 585 (790)
|-. ...+++|...|.+.- .+.|+..+--.++-.+...|...+. .++- . +- .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 521 224677777777643 3445544444444455555542222 2221 1 11 1234
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
|...+.+++.++.-.||.+.|.+.+++++.+.|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 556678999999999999999999999999987763
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.1 Score=51.38 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN--VDS-VS---WNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACN 530 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 530 (790)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.++-+.+++++|...|++..+ ..|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 44445556777777777776654 221 11 12345566677777777777777776 34444 23333333322
Q ss_pred c--cC---------------C---HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 003868 531 H--AG---------------L---VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIW 590 (790)
Q Consensus 531 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 590 (790)
. .+ + ..+|...|+.+++ -|=...-..+|...+..+...--.. -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-E 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-H
Confidence 1 00 1 1223333333333 2222222333333332221000000 1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
..+..-|.+.|++.-|..-++.+++.-|+.+ .+...+..+|...|..++|.++...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1334557888999999999999999988754 567788999999999999999887664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0021 Score=49.09 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555442 2224444445555555555555555555554
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0058 Score=46.75 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG-NIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 618 (790)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888889999999999988875 3445 5568888899999999 79999999999999987
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.5 Score=47.91 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=68.5
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC--------ChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCC
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEF--------SLPVNNALVTLYWKCGKVNEARDIFNQMPERD 351 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 351 (790)
|.+..|..+.......-.++.|+..|-..... .|+.. +...-.+-+. +--|++++|++++-++..+|
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh
Confidence 66677777777666666666666665443221 12111 0111111122 23488999999999998877
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhccC--C---hhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRER--N---LLSWTVMISGLAQNGYGEEGLKLFSQ 408 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (790)
.. |..+.+.|+|-...++++.-... | ..+|+.+...++....+++|.+.|..
T Consensus 765 LA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 LA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 45566667776666665543321 1 24667776666666666666666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=54.10 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=74.9
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-------------
Q 003868 473 NCVFNTM--PNVDSVSWNAMIAALGQ-----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA------------- 532 (790)
Q Consensus 473 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 532 (790)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 34677777777877765 467777788888999999999999999999886542
Q ss_pred ---CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 533 ---GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 533 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
.+.+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2457788999999875 999999999999999877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=57.48 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLL 627 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 627 (790)
..|..-+..+.+.|++++|...|+.+ ...|+ ...+..+...+...|+++.|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777665 22232 23566677777888888888888888888777653 455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003868 628 SNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+|...|++++|.++++...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888888887764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.024 Score=48.48 Aligned_cols=86 Identities=20% Similarity=0.108 Sum_probs=56.8
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CCcchHhhHHHHHh
Q 003868 562 IDLLCRAGKFSEAKDVIDSL---PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYAN 633 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 633 (790)
..++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|+.++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455667777777776654 22221 234556677777788888888888888777776 55555666677778
Q ss_pred cCChhHHHHHHHHH
Q 003868 634 LGRWDDAARVRKLM 647 (790)
Q Consensus 634 ~g~~~~a~~~~~~m 647 (790)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0098 Score=61.94 Aligned_cols=63 Identities=16% Similarity=0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc---hHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT---YVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...|+.+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555432 55555555555555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.7 Score=47.43 Aligned_cols=154 Identities=10% Similarity=0.015 Sum_probs=83.2
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCc-----chhhHHHHhhhhhHHHHHHhCccCCh
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVG-----VAWNALISGYVHRELKMLMLRIQLDE 282 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~~~~~li~~~~~~~~~m~~~~~~p~~ 282 (790)
|++++|++++-++.++|.. |..+.+.|++-...++++.=...+. ..|+.+=. ...+.
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~-------------~fa~~ 809 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE-------------TFAEM 809 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH-------------HHHHH
Confidence 8899999999998888743 5566677777777777653110000 01111100 00112
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHH
Q 003868 283 FTYTSVISACANSGLFRLGKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAI 358 (790)
Q Consensus 283 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 358 (790)
..|......|...|+.+.-.+.+-.....+ ....++.+....-.+.+++...|.-++|.+.|-+-..|. +.
T Consensus 810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aA 884 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AA 884 (1189)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HH
Confidence 223334444444444433222211111000 001233355666777788888888888887776655543 23
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCChh
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRERNLL 384 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~~~~ 384 (790)
+..+...++|.+|.++-+...-|.+.
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHH
Confidence 45667777788887777766655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.047 Score=48.55 Aligned_cols=88 Identities=8% Similarity=-0.051 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 567 (790)
.+..-+.+.|++++|..+|+-+.. +.|... .|..|..+|-..|++++|+..|.....- -+.++..+-.+...+..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 334444555566666666655555 344443 3344444444555555555555555431 12234444455555555
Q ss_pred cCChHHHHHHHHh
Q 003868 568 AGKFSEAKDVIDS 580 (790)
Q Consensus 568 ~g~~~~A~~~~~~ 580 (790)
.|+.+.|++.|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.041 Score=45.32 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccC--------CHHHHHHHHHHcccCCCCCCChhHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGI-LPDRITFLTVLSACNHAG--------LVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...|..+...+++.....+|+.+++.|+ .|...+|+.++.+.++.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998876543 345567788888876 889999999
Q ss_pred HHHHHHHHh
Q 003868 559 ARFIDLLCR 567 (790)
Q Consensus 559 ~~li~~~~~ 567 (790)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.026 Score=59.52 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=93.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-V-----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.+.+......+++......+++.+..++-+... + -..+..++|..|.+.|..++++.+++.=..-|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455556666677777777788888887766543 1 233456999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
|+.|++.+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888765 5555666665444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0052 Score=41.98 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877754
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=2.3 Score=47.15 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=195.6
Q ss_pred HHhCccCChhhHH-----HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCC---HHHHHHHHh
Q 003868 274 LMLRIQLDEFTYT-----SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGK---VNEARDIFN 345 (790)
Q Consensus 274 ~~~~~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~ 345 (790)
..-|++.+..-|. .+|+-+...+.+..|.++-..+.. +-.. ...++.....-+.+..+ -+.+..+-+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~----p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~ 498 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL----PESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE 498 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC----cccc-ccHHHHHHHHHHHhccCccchHHHHHHHH
Confidence 5567776665554 456667777888888888777643 2211 14677777777777633 333444545
Q ss_pred hCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 346 QMPE--RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN--------LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFK 415 (790)
Q Consensus 346 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 415 (790)
++.. ..-++|..+.+---+.|+.+-|..+++.=+... ..-+..-+.-..+.|+.+-...++-.|...
T Consensus 499 kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--- 575 (829)
T KOG2280|consen 499 KLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--- 575 (829)
T ss_pred HhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---
Confidence 5554 456788888888888999998888876544321 122334444455556666555555554432
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH-HhcC-----CCCCHhHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV-FNTM-----PNVDSVSWNA 489 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~-~~~~-----~~~~~~~~~~ 489 (790)
.+...|...+ .+...|..++.+..+..-. ..|-+.|-...+...+-.+ ++.. .+.-......
T Consensus 576 ~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~ 643 (829)
T KOG2280|consen 576 LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT 643 (829)
T ss_pred HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH
Confidence 1111111111 1223344444444432111 0122222222222211111 1110 0111112222
Q ss_pred HHHHHHhcCC---hHHH-------HHHHHHHH-HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 490 MIAALGQHGN---GARA-------IELYEQML-KEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 490 li~~~~~~g~---~~~A-------~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
..++|++... .++| +.+.+.+. +.|..-...|.+--+.-+...|+..+|.++-.+.+ .|+...|
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~ 718 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLW 718 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhH
Confidence 3344444332 1122 22333332 22344455677777788889999999999887754 4788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
-.-+.+++..+++++-+++-+++. .+.-|.-...+|.++|+.++|.+.+-+.-. +.-...+|.+.|++.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVK 787 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHH
Confidence 888999999999999988888764 244466778899999999999988776422 226788999999999
Q ss_pred HHHHHHHHH
Q 003868 639 DAARVRKLM 647 (790)
Q Consensus 639 ~a~~~~~~m 647 (790)
+|.+.--+-
T Consensus 788 eAad~A~~~ 796 (829)
T KOG2280|consen 788 EAADLAAEH 796 (829)
T ss_pred HHHHHHHHh
Confidence 998765543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.099 Score=44.72 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENGRQLHAQLVHSGYD--SSLSAGNALITMYA 464 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y~ 464 (790)
....+...|+.++|+.+|++....|..... ..+..+.+.+...|++++|..+++......-. .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556667778888888877777655442 24445556666777777777777766654211 11222222333444
Q ss_pred hcCCHHHHHHHHhc
Q 003868 465 RCGVVEAANCVFNT 478 (790)
Q Consensus 465 ~~g~~~~A~~~~~~ 478 (790)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 55666655555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.8 Score=45.07 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=78.3
Q ss_pred hcCC-HHHHHHHHhcCCC---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCChhh----HHHHHHH-
Q 003868 465 RCGV-VEAANCVFNTMPN---VDSVSWNAMI----AALGQ---HGNGARAIELYEQMLKEGILPDRIT----FLTVLSA- 528 (790)
Q Consensus 465 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a- 528 (790)
+.|. -++|.++++.+.+ -|..+-|.+. .+|.+ .....+-+.+-+-..+.|+.|-.+. -+.|.+|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3343 6677777776653 3444333322 12222 1223344444444556788875543 3333333
Q ss_pred -HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 003868 529 -CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEA 592 (790)
Q Consensus 529 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 592 (790)
....|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 346788888877766665 578999999999999999999999999999986 57776665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.52 Score=46.45 Aligned_cols=191 Identities=10% Similarity=-0.007 Sum_probs=92.4
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhh----HHHHHHHHHccCChHH
Q 003868 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFT----YTSVISACANSGLFRL 300 (790)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~ 300 (790)
...+-.....+.+.|++++|.+.|++... .-|+... .-.+..++.+.++.+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~------------------------~yP~s~~a~~a~l~la~ayy~~~~y~~ 87 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN------------------------RYPFGPYSQQVQLDLIYAYYKNADLPL 87 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------hCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 33344455667778999999999998732 2343322 2345566778889999
Q ss_pred HHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CCh-------hHHHHHHHHHHHcCCHHHH
Q 003868 301 GKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDL-------VSWNAILSAYVSAGLIDEA 371 (790)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-------~~~~~li~~~~~~g~~~~A 371 (790)
|...++..++ ..+.....-+...+.+.+....-.....-+..+.. +|. .++..+|.-|=.+.-..+|
T Consensus 88 A~~~~e~fi~----~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 88 AQAAIDRFIR----LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred HHHHHHHHHH----hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9988888887 33322222222222222210000000000111110 111 1223333333333444444
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003868 372 KSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443 (790)
Q Consensus 372 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~ 443 (790)
...+..+.+.=..---.+...|.+.|.+..|..-|+.+.+. +.+.....+..+..++...|..++|.++...
T Consensus 164 ~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 164 TKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44333333221111224455566677777777777766653 2223333444555555555655555554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.07 Score=48.09 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD-----RGVKKE 655 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 655 (790)
+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+ .|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4566777888999999999999999999999999999999999999999999999998853 455543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.1 Score=44.60 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 575 KDVIDSLPFKP----SAPIWEALLAG--CRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 575 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+.++++.++.| +...-|.|..| +..+|++.++.-...=+.+..| ++.+|..++-.+....+++||..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666554 23355666555 4678999999888777888888 8899999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.059 Score=54.54 Aligned_cols=242 Identities=15% Similarity=0.059 Sum_probs=119.3
Q ss_pred hHHHHHH--HHHccCChHHHHHHHHHHHHhcCCCCCC---CChhHHHHHHHHHHHCCCHHHHHHHHhh-------CCC--
Q 003868 284 TYTSVIS--ACANSGLFRLGKQVHAYLLRTEAKPTPE---FSLPVNNALVTLYWKCGKVNEARDIFNQ-------MPE-- 349 (790)
Q Consensus 284 t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~-------m~~-- 349 (790)
.+-..+. -+++.|+...+..+|+..++ .|.+ .-..+|..|.++|.-.+++++|++.-.. |-+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~q----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQ----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHH----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 3444443 37889999999999999998 5533 2345677778888888889998875432 111
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhc----c---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMR----E---R--NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYA 420 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 420 (790)
....+...|.+.+--.|.+++|.-.-.+-. + + ...++..+.+.|...|+.-.-.. -.+.|-.|+.++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~ 168 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT 168 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH
Confidence 122333344455555677777654432221 1 1 12345556666655443210000 000111222221
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------C--CCHhH
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLV----HSGYD-SSLSAGNALITMYARCGVVEAANCVFNTMP-------N--VDSVS 486 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~----~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~ 486 (790)
- .++.|.++|.+-. +.|-. ..-..|..|.+.|.-.|+++.|...-+.-. + .....
T Consensus 169 ~-----------al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 169 S-----------ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 0 1122222222111 11100 011223334444444555555544332111 0 12335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLK----EGI-LPDRITFLTVLSACNHAGLVKEGRRYFET 544 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 544 (790)
+..+.+++.-.|+++.|.+.|+.-.. .|- ........+|..+|.-...+++|+.++..
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56667777777888888877776432 221 11223455566666666667777777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=3.3 Score=45.99 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+ + .++-|.-...+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-----k-sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-----K-SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----C-CCCCchhHHHHHHhccc
Confidence 33444555667788999999988888888888888888999998888766654432 2 26678888889999999
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
.++|..++-.... .. -.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999998876542 11 467888899999888776443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=46.57 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC-C---CCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQL---MP-H---HAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.+++.+...+...|++++|+..+++++++ .+ + -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666677777777777777776643 12 1 13567777888888888888888777664
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.083 Score=49.34 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL----------------GALENGRQLHAQLVHSGYDSSLSAGNAL 459 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g~~~~a~~i~~~~~~~g~~~~~~~~~~l 459 (790)
.|..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+-||..++..|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345555566666777777777777777777665431 1234577777777777777777777777
Q ss_pred HHHHHhcCC
Q 003868 460 ITMYARCGV 468 (790)
Q Consensus 460 i~~y~~~g~ 468 (790)
++.+++.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 777765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.11 Score=51.64 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
-.+...|...|++++|...|+.+ |..| ....|..+...+...|+.+.|...++++++..|++.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 34444555555555555555443 1111 223444555666677888888888888888888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.069 Score=54.51 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+++.|...|.+.+++..|++...+.++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45677777788999999999999999999999999999999999999999999999999975
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.03 Score=43.27 Aligned_cols=62 Identities=15% Similarity=0.321 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678889999999988886 4445 556777888888999999999999999999999875443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.083 Score=44.52 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=74.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CcchHhhHHHHHhcCC
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH----AGTYVLLSNMYANLGR 636 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 636 (790)
-++...|+++.|++.|.+. .+- .....||.-..+++-+|+.++|+.-+++++++.-+. ..+|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999998875 333 367789999999999999999999999999984433 2578888999999999
Q ss_pred hhHHHHHHHHHHhCCCc
Q 003868 637 WDDAARVRKLMRDRGVK 653 (790)
Q Consensus 637 ~~~a~~~~~~m~~~g~~ 653 (790)
-++|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999998876653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.53 Score=48.15 Aligned_cols=270 Identities=13% Similarity=0.044 Sum_probs=157.3
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 400 (790)
....+.+...+..|+..+....+ | ++.-|..-...+...|++++|.--.+.-.+- ..-.+...-..+...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44567777788888887776554 3 4445666667777778888877665444432 2234445556666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHhc
Q 003868 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY-DSSLSAGNAL-ITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~ 478 (790)
+|...|+.-. .+ ....+...++.+..... +|....+-.| ..++.-.|+.++|.+.--.
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 6766665211 00 00111111111221111 1222222222 3345556777777666555
Q ss_pred CCCCCHh-HHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChhhHHHH---HH----------HHHccCCHHHHHHHH
Q 003868 479 MPNVDSV-SWNAMIAA--LGQHGNGARAIELYEQMLKEGILPDRITFLTV---LS----------ACNHAGLVKEGRRYF 542 (790)
Q Consensus 479 ~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~----------a~~~~g~~~~a~~~~ 542 (790)
+.+.|.. .+...+++ +--.++.+.|...|++.+. +.|+...--.. .. -..+.|.+.+|.+.+
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 5543333 22223333 3346778888888888777 56766432222 11 235678999999999
Q ss_pred HHcccC--CCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH-HHHHHHHH--HHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGP--YGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAP-IWEALLAG--CRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+.+.. ....|+...|........+.|++.+|+.--+..- +.|.. ++.-+..+ +...++++.|.+.++++.+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 988632 1344556778888888889999999988776652 33333 33333333 345588999999999998876
Q ss_pred CC
Q 003868 618 PH 619 (790)
Q Consensus 618 p~ 619 (790)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.45 Score=45.56 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=76.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
.++..+.-+|.+.-.+.++++.++..-.-+..-...|.+.-.+.|+.+.|..+|+...+. .-..+.
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~------------- 247 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDG------------- 247 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhhhhc-------------
Confidence 344444445555555666666665432333444455555555566666666666644332 001111
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 569 GKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 569 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.+.+..+.......+.-++++..|-..+.+++..+|.++...+.-+-+..-.|+..+|.+.++.|+
T Consensus 248 --------------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 248 --------------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred --------------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222223333345556777777778888888888887777766666667788888888888886
Q ss_pred hC
Q 003868 649 DR 650 (790)
Q Consensus 649 ~~ 650 (790)
.+
T Consensus 314 ~~ 315 (366)
T KOG2796|consen 314 QQ 315 (366)
T ss_pred cc
Confidence 54
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.023 Score=44.64 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-------PF-KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
.+|+.+...|.+.|++++|++.+++. +. .|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35566666666666666666666543 21 122 346777888888888888888888887764
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=5.1 Score=43.54 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPNV---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSA 528 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 528 (790)
+...|...++.-.+.|+.+.+.-.|++..-| =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888999999999999987653 2334555555555668888888888776664333233332222233
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAK---DVIDSL-PFKPSAPIWEALLAG-----CR 598 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~ 598 (790)
+-..|+.+.|..+++.+.++ . |+. ..-..-+....|.|..+.+. +++... +.+-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999985 3 543 34444566778899999888 555443 223333333333222 34
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999888876663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.72 Score=44.18 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhccC--C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRER--N----LLSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
...+.+.|++++|.+.|+.+... + ..+.-.++.++.+.|++++|...|++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666542 1 124445556666666666666666666553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.9 Score=40.43 Aligned_cols=195 Identities=18% Similarity=0.139 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMP-----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
...+......+...+....+...+.... ......+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455556666666666666666665543 23444555555666666667777777777766332221 12222222
Q ss_pred -HHHccCCHHHHHHHHHHcccCCCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhC
Q 003868 528 -ACNHAGLVKEGRRYFETMHGPYGI--PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS--APIWEALLAGCRIHG 601 (790)
Q Consensus 528 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 601 (790)
++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 567777777777777776431 11 112333344444466677788887777765 22333 456777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+.|...+...+...|.....+..+...+...|.++++...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888777555666667766666677888877777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=4.4 Score=41.48 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCh-hhHHHHHHHHHccCCH
Q 003868 460 ITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLK-EGILPDR-ITFLTVLSACNHAGLV 535 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~ 535 (790)
...|.+.|++.++-.+++.+-+ |.+..|. .|....-.+.++.-+++..+ ..++||. .+...+..+....|++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 3445555555555555555533 2222221 22222222333333333321 1256665 3555666677777777
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA-GKFSEAKDVIDSL 581 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 581 (790)
..|..--+... ...|....|..|.+.-... |+-.++...+-+.
T Consensus 346 ~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 346 SAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 77776666555 4567777777777765443 7888877777665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=43.34 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPSAPIWEALLAGCR 598 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 598 (790)
...|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555554433 33334555655555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.5 Score=37.41 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=80.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.-.|..++..++..+.... .+..-++-++--...+-+=+-..+.++.+-+-|.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777778888777653 233334444433333333344455555554432222 23444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
..-+-.++ .+......-+.....+|+-+.-.+++..+...+..+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444433 122334555777888999999999999988776778899999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.3 Score=39.34 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=46.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..-|.+.|.+..|..-++.+++.-|+.+ ..+..|..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34567889999999999999999876654 4566788899999999999988776653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.96 Score=43.31 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=30.4
Q ss_pred HHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 003868 232 MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLR 310 (790)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (790)
...+.+.|++++|.+.|+.+... -.+-+--....-.+..++.+.|+.+.|...++..++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~--------------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDR--------------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH---------------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556677777777777766211 000011112334455566666777777766666665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.51 Score=40.83 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH---------------cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLK---------------EGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 549 (790)
.++.++|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...+.|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4445555555555555555555543211 1123444455555555555555555555555555555
Q ss_pred CCCCChhHHHHHHH
Q 003868 550 GIPPGEDHYARFID 563 (790)
Q Consensus 550 ~~~p~~~~~~~li~ 563 (790)
+++.....|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 55555555544443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.64 E-value=3.4 Score=40.80 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=103.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 569 (790)
.......|+..+|..+|+..... .|+. ..-..+..++...|+.+.|..++..+-.+ --.........-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHh
Confidence 34556788999999999988874 3433 45667778888999999999999887543 11111112233456666666
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCcchHhhHHHHHhcCChh-HHHHHHH
Q 003868 570 KFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM--PHHAGTYVLLSNMYANLGRWD-DAARVRK 645 (790)
Q Consensus 570 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~-~a~~~~~ 645 (790)
...+..++-.+....| |...-..+...+...|+.+.|.+.+-.++..+ -.|...-..|+.++...|.-| .+.++++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666654455 55566677788888899988888777776653 345677778888888777444 4455555
Q ss_pred HH
Q 003868 646 LM 647 (790)
Q Consensus 646 ~m 647 (790)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 55
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.2 Score=52.57 Aligned_cols=97 Identities=8% Similarity=0.055 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSA----PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+...+..+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 34667788888888888888888888773 566764 35888888888888888888888888886321 12111
Q ss_pred HH--HHHhcCChhHHHHHHHHHHhCCC
Q 003868 628 SN--MYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 628 ~~--~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.. .+....+..+..++++.+.+-|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 10 11122333455566666665555
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.57 E-value=6.9 Score=40.84 Aligned_cols=133 Identities=13% Similarity=0.188 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH-HHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH-YARF 561 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 561 (790)
...|...++...+..-.+.|..+|-+..+.| +.++...+.+.+.-+ ..|+...|..+|+.=... -||... -.-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3455556666666555666666666666666 445555555555433 345666666666654432 223222 2345
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 562 IDLLCRAGKFSEAKDVIDSL--PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
++.+.+.++-+.|..+|+.. .++.+ ..+|..++.--..-|+...+..+-+++.++.|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 55566667767777776643 11222 3567777776677777777777777777777665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.3 Score=39.51 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcC
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVD--SVSWNAMIAALGQHG 498 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 498 (790)
|.-...+|....++++|..-+..+.+. .+.+...|.+ ....+.|--+.+++.+.+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555666666666655554431 1112111111 122333444444443321 234455566777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 499 NGARAIELYEQMLK--EGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 499 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.++.|-..+++.-+ .++.|+.. .|..-+......++... -.+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m----------------a~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM----------------AFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH----------------HHHHHHHhhhHhhhhHHhhHH
Confidence 77777666665432 12445432 12222222222222222 234455566677788888887
Q ss_pred HHHHHhCC-----C--CCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 575 KDVIDSLP-----F--KPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL----MPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 575 ~~~~~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
-..|.+-+ + -|+. ..+.+.+-.+.-..|+..|+..++.-.+. .|++..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 76665542 1 1222 22444444555567888888888876554 456667777777776 5677777766
Q ss_pred HHH
Q 003868 643 VRK 645 (790)
Q Consensus 643 ~~~ 645 (790)
+..
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.8 Score=42.66 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=37.0
Q ss_pred HHHHcCCHHHHHHHHHHhccC---C----hhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRER---N----LLSWTVMISGLAQ---NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 428 (790)
+|-...+++...++.+.+... + ...--...-++-+ .|+.++|+.++..+......++..||..+...|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 355555555555555555442 1 1111122333344 677777887777765555566667776666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.81 Score=40.09 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc-chHhh--HHHHHhcC
Q 003868 564 LLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-TYVLL--SNMYANLG 635 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l--~~~~~~~g 635 (790)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++. .|... +-++.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 344678888888887766 3333 3345667788888999999999999999999888753 23333 33333433
Q ss_pred C---------------hhHHHHHHHHHHh
Q 003868 636 R---------------WDDAARVRKLMRD 649 (790)
Q Consensus 636 ~---------------~~~a~~~~~~m~~ 649 (790)
. ..+|..-|+...+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 3 4566666666644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.41 Score=47.24 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=16.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
|...|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.4 Score=37.61 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 003868 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501 (790)
Q Consensus 422 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 501 (790)
..++..+.+.+.......+++.+.+.+ ..+....+.++..|++.+ ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 345555555566666666666666554 245555555555555432 12
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc-CChHHHHHHHHh
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA-GKFSEAKDVIDS 580 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 580 (790)
+.++.++. .++......++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 23333321 23344445566666666666666666665432 22233333333 667777777766
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 003868 581 LPFKPSAPIWEALLAGCR 598 (790)
Q Consensus 581 ~~~~p~~~~~~~ll~~~~ 598 (790)
- .+...|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 25556766665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=5.5 Score=38.33 Aligned_cols=198 Identities=20% Similarity=0.159 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHH-
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHS-GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VD-SVSWNAMIA- 492 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~- 492 (790)
...+......+...+.+..+...+...... ........+..+...+...++...+.+.+..... ++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555556666665555555442 2334445555556666666667777777665543 11 122222333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHh
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILP----DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCR 567 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 567 (790)
.+...|+.+.|...|++... ..| ....+......+...++.+++...+...... .+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 67888999999999988855 344 2234444444467788999999999888753 333 36778888888888
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 568 AGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 568 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
.+.+++|...+... ...|+ ...+..+...+...++.+.+...+++.....|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888776 33444 455556666666677899999999999998887
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1 Score=46.24 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
..+..|.-.|.+.+++.+|++.-.+. ..+ +|.-..--=..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777778888888888776654 333 4555555567788899999999999999999999998888888888877
Q ss_pred cCChhHH-HHHHHHHHh
Q 003868 634 LGRWDDA-ARVRKLMRD 649 (790)
Q Consensus 634 ~g~~~~a-~~~~~~m~~ 649 (790)
..+..+. .++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776654 788999964
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.32 Score=46.94 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHhcCC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----------
Q 003868 471 AANCVFNTMP--NVDSVSWNAMIAALGQH-----GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG---------- 533 (790)
Q Consensus 471 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 533 (790)
..++.|..+. ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888999999888754 566777778899999999999999999998865432
Q ss_pred ------CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 534 ------LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 534 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+-+-++.++++|... |+.||.++-..|+.+++|.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccH
Confidence 345688999999875 99999999999999999988643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.12 Score=32.63 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888888999999999999999988863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.35 Score=47.06 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL----P---FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVL 626 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 626 (790)
.|+.-++.| +.|++.+|...|... | ..|+.. -.|...+...|+++.|...|..+....|++ |.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455544433 455577776666554 1 223333 336677777777777777777777766654 456777
Q ss_pred hHHHHHhcCChhHHHHHHHHHHh
Q 003868 627 LSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|+.+..+.|+.++|..++++..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 77777788888888888877754
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.2 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.9 Score=45.58 Aligned_cols=144 Identities=9% Similarity=0.036 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHH-HcCCCCChh-hHHHHHHHHH---------ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 500 GARAIELYEQML-KEGILPDRI-TFLTVLSACN---------HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 500 ~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
.+.|+.+|.+.. .+.+.|+.. .|..+..++. ......+|.++-+...+ --+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 457778888877 222667654 3333322221 12345566666666664 2344566666667777777
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH--hhHHHHHhcCChhHHHHHH
Q 003868 569 GKFSEAKDVIDSL-PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV--LLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 644 (790)
|+++.|...|++. .+.||. .+|......+.-.|+.++|.+.++++++++|....+-. ..++.|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8888888888876 456654 56766666777788888888888888888887644333 3333455544 46666655
Q ss_pred HH
Q 003868 645 KL 646 (790)
Q Consensus 645 ~~ 646 (790)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.83 Score=48.18 Aligned_cols=116 Identities=10% Similarity=0.039 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 003868 534 LVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCR---------AGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG 601 (790)
Q Consensus 534 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 601 (790)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++-++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 457788888888743345665 4455555444321 12334455555544 3444 6677777777778888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+.|...++++..++|+.+.+|...+..+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999998654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.85 Score=48.15 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=77.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+..+...-+++-++..+ +.||-.+...++ +-..+.-+.++.++|++..+. + ...+..- ......|.. -
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---h
Confidence 34455555666666665 566665433333 222344567777777765542 1 0000000 000001111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 576 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.....|+..+...+++.++..++.+-.+..++
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222233344555667778888888888888776654 3456677788888888888888887776554444
Q ss_pred cCC
Q 003868 654 KEP 656 (790)
Q Consensus 654 ~~~ 656 (790)
+..
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 443
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.58 E-value=3.2 Score=36.84 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
+......++..+.+.+.......+++.+...+ ..+....+.++..+++..
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD 55 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC
Confidence 33455678899998999999999999998876 367778888888888653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.1 Score=48.43 Aligned_cols=130 Identities=15% Similarity=0.271 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPD--RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
...|+++++.++.+.-. +-|. ..-...++.-+.+.|..+.|+++.+.-. .-.++..++|+++
T Consensus 272 v~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 44566666655553111 1111 2235556666667777777766643211 2245556777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 573 EAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 573 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777776653 6667888888777888888777777763 446677777777777766666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.3 Score=42.41 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHHccCCHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS----ACNHAGLVKEG 538 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a 538 (790)
.|+..+|-..++++.+ .|..+|+..=.+|.-.|+...-...+++..-. ..||...|..+=. ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444433 25566666666666666666666666665543 3455433322211 22355666666
Q ss_pred HHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 539 RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.+.-++..+- .+.|.-.-.++...+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 6666655431 1222223334555556666666666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.58 Score=42.04 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555552 33 3345555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.92 E-value=2.1 Score=42.17 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=87.4
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHHhCCHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL---LAGCRIHGNID 604 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 604 (790)
.....|+..+|...|...... .+-+...-..|...|...|+.++|..++..+|.+-...-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778999999999988763 3344567778899999999999999999999765444444432 22233333322
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+.. .++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 344455679999999999999999999999999987777543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.9 Score=45.62 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHh
Q 003868 393 LAQNGYGEEGLKLFSQMRLE--GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS--GYDSS---LSAGNALITMYAR 465 (790)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--g~~~~---~~~~~~li~~y~~ 465 (790)
+.+..+.++|+..+.+-... ...--..+|..+..+.++.|.++++...---.+.. ..... ...|..|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777665542 11112335666667777777666655432221111 01111 1222333333333
Q ss_pred cCCHHHHHHHHhcC---CC--C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHcc
Q 003868 466 CGVVEAANCVFNTM---PN--V---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHA 532 (790)
Q Consensus 466 ~g~~~~A~~~~~~~---~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~ 532 (790)
.-++.+++.+-..- +. + .-..-.+|..++.-.+.++++++.|+...+---..+. ..+..|.+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333332211 11 0 0112223444555555666666666665542111111 3566666666666
Q ss_pred CCHHHHHHHHHHc---ccCCCCCCChhHHHHH-----HHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 003868 533 GLVKEGRRYFETM---HGPYGIPPGEDHYARF-----IDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAG 596 (790)
Q Consensus 533 g~~~~a~~~~~~~---~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~ 596 (790)
.++++|.-+..+. ...+++..-..-|.++ .-+|-..|++.+|.+.-++. +.++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666655443 2223333222223322 22344555555554444432 3222 12234455566
Q ss_pred HHHhCCHHHHHHHHHHHHhc
Q 003868 597 CRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~ 616 (790)
|+..|+.|.|..-|+.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 66666666666666665544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.5 Score=45.15 Aligned_cols=161 Identities=13% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHc----cCCHHHHHHHHHHcccCCCCCCCh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI------TFLTVLSACNH----AGLVKEGRRYFETMHGPYGIPPGE 555 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 555 (790)
....+++...-.|+-+.+++++.+-.+.+---... +|...+..+.. ....+.+.+++..+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666677788888888887765532111111 23333333332 45788899999998864 3555
Q ss_pred hHHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH-hh
Q 003868 556 DHYA-RFIDLLCRAGKFSEAKDVIDSLPF-K-----PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV-LL 627 (790)
Q Consensus 556 ~~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l 627 (790)
..|. --...+...|++++|.+.|++.-. + -....+--+...+....++++|...+.++.+...-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5444 334566778999999999986521 1 12233444566677889999999999999998766656665 44
Q ss_pred HHHHHhcCCh-------hHHHHHHHHHHh
Q 003868 628 SNMYANLGRW-------DDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~-------~~a~~~~~~m~~ 649 (790)
+-+|...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5566788888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.68 Score=45.96 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=116.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHH----HHHHHHHhcCCh
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYA----RFIDLLCRAGKF 571 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~ 571 (790)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ..|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888999999999885 5556678888888999999999999999998863 345544333 344456789999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CcchHhhHHHHHhcCChhHHHHHHH
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH----AGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+--..-.+. ...|-..+-.|.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998886 4444 45555667777788899999998887754433221 3456677778888899999999999
Q ss_pred HHHhCCCccCCc
Q 003868 646 LMRDRGVKKEPG 657 (790)
Q Consensus 646 ~m~~~g~~~~~~ 657 (790)
.-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.1 Score=42.61 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=68.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPF--KPSA--PIWEALLAGCR 598 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~ll~~~~ 598 (790)
..+..++-+.|+.++|.+.|++|.+.+....+......|+..|...+.+.++..++.+... -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456666788999999999999987533223445677899999999999999999988741 2333 35665544444
Q ss_pred HhCCH---------------HHHHHHHHHHHhcCCCCC
Q 003868 599 IHGNI---------------DLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 599 ~~g~~---------------~~a~~~~~~~~~~~p~~~ 621 (790)
..+|. ..|.+++.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 245678888888887654
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.57 E-value=25 Score=41.74 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 536 (790)
.-.++.--+.|-+.+|..++..-.+.--..|.+...-+...+.+++|.-+|+..-+ ..-.+.+|-..|+|.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33444445556666666655543333334444445555556677777766665422 123456777777888
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP 585 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 585 (790)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 87777776653 211122233566667777777777777776664333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.8 Score=44.22 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 539 (790)
.+...++|+++.|.++-++.. +...|..|......+|+.+-|.+.|++..+ |..|+-.|.-.|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344556677777766665554 455677777777777777777776665443 445555555666665555
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
++.+..... |. ++.-...+.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555444432 11 2333333334455555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.5 Score=37.90 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=88.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+..||-+.--+...|+++.|.+.|+...+ +.|.- .+...-.-++.-.|+++-|.+-|...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777777777888888888887776 34432 2222222234455777777665554433212223233332222
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------CcchHhhHHHHHhcC
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-------AGTYVLLSNMYANLG 635 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 635 (790)
.+.-+..+|..-+.+--.+.|..-|...+-.+.-..-.+ +.+++++.+-..++ ..+|..|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 234456666544433212345555665554443221111 22333333332232 468999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 003868 636 RWDDAARVRKLMRDRG 651 (790)
Q Consensus 636 ~~~~a~~~~~~m~~~g 651 (790)
..++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999886543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.97 E-value=4 Score=35.87 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPD---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
....+.|++++|.+.|+.+... .... ...-..++.++.+.|++++|...++..++-+.-.|++ .|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344566666666666666653 1111 1344555666666666666666666665533333332 233333333322
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 569 GKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 569 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
...+.. +..+ ..+-| .+....|...|++++...|++.
T Consensus 96 ~~~~~~---~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---HhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222111 1111 11111 1235678888999999999874
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.85 E-value=7.5 Score=42.61 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-------VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
+.+.+.+++..+.+. +|......-.-...+...|++++|.+.|++... .....+--+.-.+...+++++|.+
T Consensus 248 ~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555443 122222222223445556666666666664332 122233334445666677777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHH-HccCCH-------HHHHHHHHHc
Q 003868 506 LYEQMLKEGILPDRITFLTVLSAC-NHAGLV-------KEGRRYFETM 545 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~~ 545 (790)
.|.++.+.. .-...+|..+..+| ...|+. ++|.++|.++
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777632 22233343333333 234544 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.4 Score=43.05 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh-hHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE-DHYAR 560 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 560 (790)
.|+.-+.. .+.|++.+|...|...++. -|+. ..+..|..++...|++++|..+|..+.+.|+-.|.. +.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 3456677777777777764 3433 234556666677777777777777666655444433 45555
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~ 581 (790)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 555555566666655555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.69 E-value=5.3 Score=40.44 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHhccC------ChhHHHHHHHHHHhcCChHHHHHHHHH-HHHc-CCCCCH---HHHHHHHHHHHc
Q 003868 362 YVSAGLIDEAKSLFEAMRER------NLLSWTVMISGLAQNGYGEEGLKLFSQ-MRLE-GFKPCD---YAFAGAITSCAG 430 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~-g~~p~~---~t~~~ll~~~~~ 430 (790)
+.+..+.++|+..+.+..++ -..+|..+..+..+.|.+++++..--. |.-. ...-.. ..|..+-.++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888777766653 124677777888888888877654322 2110 011111 123333333333
Q ss_pred cCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--CHhHHHHHHHHHHhc
Q 003868 431 LGALENGRQLHAQLVHS-GYDS---SLSAGNALITMYARCGVVEAANCVFNTMPN-------V--DSVSWNAMIAALGQH 497 (790)
Q Consensus 431 ~g~~~~a~~i~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~ 497 (790)
.-++.+++.+-..-... |..+ .-...-++..++...+.++++.+.|+...+ + ....+-.|.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444433332221 2222 123334466677777788888888876532 1 344677888888888
Q ss_pred CChHHHHHHHHHHHH----cCCCCChhhHHHHH-----HHHHccCCHHHHHHHHHHcccC---CCCCCC-hhHHHHHHHH
Q 003868 498 GNGARAIELYEQMLK----EGILPDRITFLTVL-----SACNHAGLVKEGRRYFETMHGP---YGIPPG-EDHYARFIDL 564 (790)
Q Consensus 498 g~~~~A~~~~~~m~~----~g~~p~~~t~~~ll-----~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~ 564 (790)
.++++|+-+..+..+ -|+.--..-|..++ -++...|.+-.|.+..++..+- .|..+. .....++.|.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877766543 22222223444433 2455678888888887766442 233332 2344578888
Q ss_pred HHhcCChHHHHHHHHh
Q 003868 565 LCRAGKFSEAKDVIDS 580 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~ 580 (790)
|-..|+.|.|..-++.
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 8888998888777665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=29 Score=39.25 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 501 ARAIELYEQMLKEGILP-----DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+..+++|.+.-...+-| ........+..|.+.|-++|-.-++.+|-. ++.+|.-.--+.++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 45556665554433333 223344555566666666666666665531 2333333344556666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003868 576 DVIDSLPFKPSAPIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 576 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 607 (790)
++.++ +.|...|..|++-+...-.+-.++
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 66665 457788888888776655444333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=3 Score=37.57 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
..|++++|..+|.-+.- -+..-|..|..++-..+++++|+..|......+ .-|...+.....++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 44555555555554321 234444555555555555555555555544422 12223334444455555555555555
Q ss_pred HHHccc
Q 003868 542 FETMHG 547 (790)
Q Consensus 542 ~~~~~~ 547 (790)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.22 E-value=8.9 Score=32.93 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
.-+..+.+.|+-++-.+++.++.+. -.+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445555666667667777766542 356666777777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.17 E-value=27 Score=38.30 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNL---LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 427 (790)
+..+|..-+.--...|+.+.+.-+|+....+-. ..|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456788888888888888888888888776532 35555555555557777777776655544333222221111122
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
+-..|++..|..+++.+...- +.-+.+-..-+.+..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334578888888888877664 333333334455555666666665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=19 Score=36.39 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYG----EEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
++|.......+.++...|..+-...+..-+..+|...-..-+.++.+.|+. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444444555555555432222222222333444444444444444432 3455555555332 3444444444
Q ss_pred HHHHHccCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChH
Q 003868 425 ITSCAGLGALEN--GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHG-NGA 501 (790)
Q Consensus 425 l~~~~~~g~~~~--a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 501 (790)
+.++...+.-.. .......+...-..++..+-...+.++++.|+.+....+...+..+|...-...+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 444443321110 01111111111112233444444555555554333333333333343333333333333332 123
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 003868 502 RAIELYEQMLKEGILPDRITFLTVLSACNHAGL 534 (790)
Q Consensus 502 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 534 (790)
.+...+..+.. .+|...-...+.+..+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 34444444442 3344444444445555444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.91 E-value=23 Score=37.15 Aligned_cols=150 Identities=11% Similarity=-0.004 Sum_probs=80.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHcccC-CCCCCChhH
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP---DRITFLTVLSACNHAGLVKEGRRYFETMHGP-YGIPPGEDH 557 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 557 (790)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888899999999999888887743222 2233333444555678888888887776652 111101111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 558 YARFIDLLCRAGKFSEAKDV-IDSLPFKPSAPIWEALLAGCRIH------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000112333333333333 788889999999999999887777777766
Q ss_pred HHh
Q 003868 631 YAN 633 (790)
Q Consensus 631 ~~~ 633 (790)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.72 Score=42.31 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 564 LLCRAGKFSEAKDVIDSL----PFKP---SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
-+.+.|++++|..-|... |.-+ ....|..-..+..+.+..+.|+....++++++|.+..+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777666554 2111 123455555667788999999999999999999988888888999999999
Q ss_pred hhHHHHHHHHHHhC
Q 003868 637 WDDAARVRKLMRDR 650 (790)
Q Consensus 637 ~~~a~~~~~~m~~~ 650 (790)
+++|++-++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.81 Score=38.81 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=51.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
-+....|+.+.|++.|.+.+.+-|.++.+|+.-+.+|--.|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999998875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.31 E-value=46 Score=39.64 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHCCCHHHHHHHHhhCCCC-ChhH--HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPER-DLVS--WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK 404 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (790)
+.+|..+|++.+|+.+-.++..+ |... -..|+.-+...++.-+|-++..+....-... +..|++...+++|+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a----v~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA----VALLCKAKEWEEALR 1047 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH----HHHHhhHhHHHHHHH
Confidence 44566666666666666666543 2221 2455666666666666666655544332222 223333334555555
Q ss_pred HHH
Q 003868 405 LFS 407 (790)
Q Consensus 405 ~~~ 407 (790)
+-.
T Consensus 1048 va~ 1050 (1265)
T KOG1920|consen 1048 VAS 1050 (1265)
T ss_pred HHH
Confidence 443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.41 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=20.3
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.6 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.63 E-value=5.2 Score=36.08 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHcCCHHHHHHHHHHhccCChhHHHHH-----HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH--HHccCC
Q 003868 362 YVSAGLIDEAKSLFEAMRERNLLSWTVM-----ISGLAQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAITS--CAGLGA 433 (790)
Q Consensus 362 ~~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~ 433 (790)
+++.+..++|+..|..+.+.+--.|-.| .....+.|+..+|...|++.-.....|-.. -...+=.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3555666666666666665544333333 334556677777777777766544344322 11111111 223444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
++......+.+...+-+.-...-.+|.-+-.|.|++.+|.+.|..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 444444433333333222233333344444444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.65 Score=29.83 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888899999999999999986644
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.71 E-value=6 Score=40.18 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCC--HHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGL--VKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
.+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. ++++...+|..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 356677788888877776553 33333333322222 45777888888876 888887777655443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.7 Score=40.03 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=63.5
Q ss_pred HHHHHHhhCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 339 EARDIFNQMP--ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKP 416 (790)
Q Consensus 339 ~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 416 (790)
..++.|...+ ++|-.+|-+++..+....- -+.+..+-....++.|.+-|+.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sV--------------------------r~R~HveFIy~ALk~m~eyGVer 105 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSV--------------------------RGRTHVEFIYTALKYMKEYGVER 105 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhh--------------------------cccchHHHHHHHHHHHHHhcchh
Confidence 3455666666 5677777777766654310 01122343444455566666666
Q ss_pred CHHHHHHHHHHHHccC----------------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 417 CDYAFAGAITSCAGLG----------------ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 417 ~~~t~~~ll~~~~~~g----------------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
|..+|..||+.+-+.. .-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 106 Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 106 DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 6666666666554322 224567788888888888888888888888877664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.6 Score=29.57 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI 520 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 520 (790)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777888888777777 466654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.68 E-value=40 Score=35.51 Aligned_cols=91 Identities=9% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCCh---HHHHHHHHHHhcCCChHHHHHHHhhCCCCCC
Q 003868 36 SVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDI---VARTTLIAAYSASDNVKLAREMFNKTPLKMR 112 (790)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 112 (790)
++-+++..+ +.|...|-.||.-|...+.+++-++++++|..|-+ .+|.--+++-....++.....+|.+-....-
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444433 56788999999999999999999999999998654 4688888877777889999999987655446
Q ss_pred CcchHHHHHHHHHhCC
Q 003868 113 DTVFYNAMITAYSHNS 128 (790)
Q Consensus 113 ~~~~~n~li~~~~~~g 128 (790)
++..|...+...-+.+
T Consensus 108 ~ldLW~lYl~YIRr~n 123 (660)
T COG5107 108 NLDLWMLYLEYIRRVN 123 (660)
T ss_pred cHhHHHHHHHHHHhhC
Confidence 7788888887655543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.44 E-value=4 Score=35.92 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=44.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367888888888888888888888888888888888999999888888876553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.20 E-value=3.8 Score=36.75 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=30.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++.+.++.++.-+.-+.|..+..-..-++.+...|+|++|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445566666666666666666666555666666666666666666666544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.91 E-value=37 Score=34.30 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=13.0
Q ss_pred HHHHHhCCHHHHHHHHHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~ 614 (790)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33456677777777777543
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.60 E-value=9.5 Score=34.47 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChh-HHHHH--HHHHHhcCC
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGED-HYARF--IDLLCRAGK 570 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g~ 570 (790)
++.|..++|+.-|..+.+.|..--++ .-..........|+...|...|.++-.+ .-.|... -...| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45556666666666666554332221 1111222344566666666666666554 2222221 11111 123445666
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 571 FSEAKDVIDSLPFKPS---APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 571 ~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
+++...-.+.+.-..+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666665522212 22334555555666777777777766654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.22 E-value=33 Score=36.00 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH----HAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
....+|..+...++++|+++.|...+.++....+. .+.....-+..+-..|+.++|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999886522 456777778899999999999999888876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.7 Score=27.22 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677778888888888888888888877 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.1 Score=41.38 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++..++..+...|+.+.+...++++++.+|-+...|..|+.+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666667778888888888888888888888888888888888888888888887765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.93 E-value=36 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 359 LSAYVSAGLIDEAKSLFEAMRERNL------LSWTVMISGLAQNGYGEEGLKLFSQMRLE 412 (790)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (790)
+..-.+.|++++|.+.|+.+....+ .+--.++.++-+.+++++|+..+++....
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3344556676666666666654322 23444555666677788888877776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.80 E-value=35 Score=32.93 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCC--hhHHHHHHHHH
Q 003868 285 YTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERD--LVSWNAILSAY 362 (790)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~ 362 (790)
|-....+|....+++.+...+....+ +.+.+...|. ....++.|.-+..+|.+-+ +.-++.-...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-----~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-----GYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-----HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444566667778877776665553 1222222221 2233444544555544422 22455566677
Q ss_pred HHcCCHHHHHHHHHHh
Q 003868 363 VSAGLIDEAKSLFEAM 378 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m 378 (790)
.++|..+.|-..+++.
T Consensus 102 ~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKA 117 (308)
T ss_pred HHhCCcchHHHHHHHH
Confidence 7777766665555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.3 Score=44.02 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~ 603 (790)
.-|.+.|.+++|+..|..... ..| +..+|..-..+|.+..++..|+.=-... .+. .-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 468999999999999998774 345 8888888899999999998877554433 111 0112333333444456889
Q ss_pred HHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.+|.+-++.+++++|++ .-|-..|++.....|+.-+.+
T Consensus 182 ~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN----IELKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHHhh
Confidence 99999999999999996 345555666555555544433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.80 E-value=73 Score=36.58 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRERNLL---SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
.-+..+.+...++-|..+-+.-..+... ......+.+.+.|++++|...|-+-... +.|. .++.-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 3444555555555555554443322111 1222334455677888888777655432 3332 23444444455
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
...-..+++.+.+.|+.. ...-+.|+.+|.|.++.++-.+..+...
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555556667777777543 3445667778887777777666555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.67 E-value=28 Score=31.74 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCC--ChHHHHHHHhhCCCCCC
Q 003868 35 RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASD--NVKLAREMFNKTPLKMR 112 (790)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~ 112 (790)
.+...-+.+.+++|+...+..++..+.+.|.+..-..++..-.-+|...-...+-.+.... -..-|..++.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--- 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--- 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---
Confidence 3445566678999999999999999999999999888887766555554444443333221 24556667766662
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh
Q 003868 113 DTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE 164 (790)
Q Consensus 113 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 164 (790)
.+..++..+...|++-+|+++.+..... +......++.+....++
T Consensus 91 ---~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 91 ---AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSND 135 (167)
T ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCC
Confidence 3788889999999999999999886422 22233445666555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.07 E-value=4 Score=40.61 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCCCChhhHHHHH
Q 003868 83 ARTTLIAAYSASDNVKLAREMFNKTPLK-MRDTVFYNAMITAYSHNSNGHAAIELFRDMRR-----DDVKPDNFTFTSVL 156 (790)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll 156 (790)
+++.++..+..+|+++.+.+.++++... +-+...|..++.+|.++|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4567888888999999999999987765 56778899999999999999999999998875 58888877766665
Q ss_pred HH
Q 003868 157 SA 158 (790)
Q Consensus 157 ~~ 158 (790)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 55
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=80 Score=36.27 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 498 GNGARAIELYEQMLKEG-ILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.+.+.|..++.+..... ..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 34566777776654322 222221 2223322222222245556665554322 12333334444444467777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 575 KDVIDSLPF--KPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 575 ~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
...|..|+. +....-.--+..+....|+.+.|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777642 111222223445555567777777777765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.71 E-value=12 Score=34.85 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPNV------DSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
..+..+.+.|.+.|+.+.|.+.|.++.+. -...+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556677777777777777777776652 123455566666667777777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.46 E-value=63 Score=34.77 Aligned_cols=163 Identities=7% Similarity=0.074 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC 529 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 529 (790)
|-....++++.++..-...-.+.+..+|.. .+-..|-.++..|.++ ..+.-..+|+++.+ ..-|.+.+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 333444555555555555555555555543 3455566666666666 44566666666666 344454444444444
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPG------EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPSAPIWEALLAGCRI 599 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~ 599 (790)
...++.+.+..+|.++.. .+.|. .+.|.-|+... ..+.|.-..+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444666666666666553 22331 22333333322 12333333333332 222223333344444555
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
..++++|+++...+++.+..|.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhh
Confidence 6666777777766666654443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.31 E-value=20 Score=40.93 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.5
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhc
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGM 251 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 251 (790)
+...|. +|--+.+.|++++|.++..+.
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~ 137 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANEN 137 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHh
Confidence 455664 677889999999999999654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.21 E-value=0.2 Score=44.85 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChH
Q 003868 19 QLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK 98 (790)
Q Consensus 19 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (790)
+++.+.+++. +......++.+...+...+....+.|+..|++.+..+...+++..... +-...++..+-+.|.++
T Consensus 13 vi~~~~~~~~--~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQ--PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT---GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 4555656666 777888888888877777888899999999999888888888774433 33455666666777777
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 003868 99 LAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 99 ~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 161 (790)
.|.-++.++.. |...+..+...++++.|.+.+... ++...|..+++.|..
T Consensus 88 ~a~~Ly~~~~~-------~~~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 88 EAVYLYSKLGN-------HDEALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLD 137 (143)
T ss_dssp HHHHHHHCCTT-------HTTCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCT
T ss_pred HHHHHHHHccc-------HHHHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHh
Confidence 77776665554 111111123334444444333322 345566666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.14 E-value=60 Score=34.22 Aligned_cols=179 Identities=14% Similarity=0.185 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHhcCCC----CCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCCHH
Q 003868 466 CGVVEAANCVFNTMPN----VDSVSWNAMIAALG-QHGNGARAIELYEQMLKEGILPDRI----TFLTVLSACNHAGLVK 536 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 536 (790)
.|+.++|.+.+..+.. +....|-+|+.+-. ...++.+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888889988888764 34556666766544 46689999999999876 456543 3444455678899999
Q ss_pred HHHHHHHHcccCCCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYA-RFIDLLCRAG---KFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 612 (790)
++..+-......|...|-...|. .++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777666666666544333 3344444433 3445556666664233345888888889999999999999999
Q ss_pred HHhcCCCCCcchHhhHHHHHhc-----CChhHHHHHHHHH
Q 003868 613 LFQLMPHHAGTYVLLSNMYANL-----GRWDDAARVRKLM 647 (790)
Q Consensus 613 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 647 (790)
+..+..+ ...-...+..|... .+.++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998633 34444555555443 3456666655554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.05 E-value=29 Score=31.28 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a 606 (790)
-...++.+++..++..+. -+.|.. ..-..-...+.+.|++++|..+|+++. ..|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345556666666666665 234432 222233344566777777777777763 234445556666666554433333
Q ss_pred HHHHHHHHhcCC
Q 003868 607 IQAAEQLFQLMP 618 (790)
Q Consensus 607 ~~~~~~~~~~~p 618 (790)
....+++++..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 334444555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.79 E-value=17 Score=33.80 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCC--CCCCCh----h
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPY--GIPPGE----D 556 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~~----~ 556 (790)
..+..+..-|++.|+.+.|++.|.++.+....|... .+..++..+...+++..+..+..++.... +-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467778899999999999999999999876666664 57788888889999999988887765421 111221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.|..| .+...|++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 234578899988888766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.52 E-value=38 Score=32.45 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHcccCC-CCCCChhHHHHHHH---HHHhcCChHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHHh
Q 003868 533 GLVKEGRRYFETMHGPY-GIPPGEDHYARFID---LLCRAGKFSEAKDVIDSLP---FKPSAPIWEA---LL--AGCRIH 600 (790)
Q Consensus 533 g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll--~~~~~~ 600 (790)
.++++|+..|+..-+-| |-+.+...-.|++. .-+..+++.+|+++|++.. ...+..-|.. ++ ..|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 34455555555443322 22223333334443 3456788899999988762 2222222322 22 223333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCcc
Q 003868 601 -GNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 601 -g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.|.--+...+++..+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 67777888899999999984433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.40 E-value=92 Score=35.81 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHH----HHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChh
Q 003868 208 SLMGAARRVFDEMPERDELSWTTM----MTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEF 283 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~ 283 (790)
..++.|..+-+.-.. |...-..+ .+-+-+.|++++|..-|-+-. .-+.|
T Consensus 348 ~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI-----------------------~~le~--- 400 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI-----------------------GFLEP--- 400 (933)
T ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc-----------------------ccCCh---
Confidence 556666666543322 22222222 334456788999888876531 01122
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChh-HHHHHHHHH
Q 003868 284 TYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLV-SWNAILSAY 362 (790)
Q Consensus 284 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~ 362 (790)
+.++.-+........-...++.+.+ .|.. +...-+.|+.+|.|.++.+.-.++.+...+.... -....+..+
T Consensus 401 --s~Vi~kfLdaq~IknLt~YLe~L~~----~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Il 473 (933)
T KOG2114|consen 401 --SEVIKKFLDAQRIKNLTSYLEALHK----KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEIL 473 (933)
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHHHH----cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHH
Confidence 2334444444444444555566666 4444 3445567888888888888887777776622111 133455556
Q ss_pred HHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 363 VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 363 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
.+.+-.++|..+-.+... +...... .+-..+++++|++.+..|.
T Consensus 474 r~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 474 RKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 666666666655554443 2222222 2334566777777776653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=94 Score=35.70 Aligned_cols=415 Identities=8% Similarity=-0.002 Sum_probs=194.6
Q ss_pred ChhHHHHHhhhCCC-CC-hHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 003868 65 KLVYARTLFDEIPQ-PD-IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142 (790)
Q Consensus 65 ~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 142 (790)
..++....+++.+. |- ...-..-+..+.+.+++....+.+..-+ .+...-.....+....|+.++|......+-.
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p---~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKP---KPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444445554443 22 1222334455556677777666332222 4444455666777777887777777777765
Q ss_pred CCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC
Q 003868 143 DDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE 222 (790)
Q Consensus 143 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~ 222 (790)
.|.. ....+..++..+. +.|.-.+..++.-+-.++.. |+...|..+...++.
T Consensus 158 ~g~~-~p~~cd~l~~~~~-----------------~~g~lt~~d~w~R~~~al~~----------~~~~lA~~l~~~l~~ 209 (644)
T PRK11619 158 TGKS-LPNACDKLFSVWQ-----------------QSGKQDPLAYLERIRLAMKA----------GNTGLVTYLAKQLPA 209 (644)
T ss_pred cCCC-CChHHHHHHHHHH-----------------HcCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHhcCh
Confidence 5522 2344454554443 33333333333333333322 667777776666632
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHH---HHHHHHHccCChH
Q 003868 223 RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYT---SVISACANSGLFR 299 (790)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~---~ll~~~~~~~~~~ 299 (790)
........++..+. +...+..++.. +.|+...-. ..+.-+ ...+.+
T Consensus 210 ~~~~~a~a~~al~~---~p~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~Rl-ar~d~~ 258 (644)
T PRK11619 210 DYQTIASALIKLQN---DPNTVETFART---------------------------TGPTDFTRQMAAVAFASV-ARQDAE 258 (644)
T ss_pred hHHHHHHHHHHHHH---CHHHHHHHhhc---------------------------cCCChhhHHHHHHHHHHH-HHhCHH
Confidence 21112222222221 22222222221 112221111 122222 234557
Q ss_pred HHHHHHHHHHHhcCCCCCCC--ChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCCHHHHHHHH
Q 003868 300 LGKQVHAYLLRTEAKPTPEF--SLPVNNALVTLYWKCGKVNEARDIFNQMPER--DLVSWNAILSAYVSAGLIDEAKSLF 375 (790)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 375 (790)
.|...+...... ..+.. ...+...+..-....+...+|...++....+ |...+..-+..-.+.++++.+...+
T Consensus 259 ~A~~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 259 NARLMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 777777765431 11111 1223334433333333356677777765432 4444444555556888888888888
Q ss_pred HHhccC--ChhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCC
Q 003868 376 EAMRER--NLLS-WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL-ENGRQLHAQLVHSGYDS 451 (790)
Q Consensus 376 ~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~ 451 (790)
..|.+. +... ..=+..++...|+.++|...|+..... . +|-.++.+ .+.|.. .-....... ....+..
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~ 407 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQ 407 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhcc
Confidence 888652 2222 333456666788899998888887431 1 23333221 111211 000000000 0000010
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCChhhHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN-VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG----ILPDRITFLTVL 526 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll 526 (790)
.. ...-+..+...|....|...+..+.. .+......+...-.+.|.++.++.........+ --| ..|...+
T Consensus 408 ~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp--~~~~~~~ 483 (644)
T PRK11619 408 GP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP--LAWNDEF 483 (644)
T ss_pred Ch--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC--cchHHHH
Confidence 11 11223445566777777777665443 344444445455556777777766654432210 011 1355666
Q ss_pred HHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
..++....++.++-+ --+..+.++.|+..+
T Consensus 484 ~~~a~~~~v~~~lv~-ai~rqES~f~p~a~S 513 (644)
T PRK11619 484 RRYTSGKGIPQSYAM-AIARQESAWNPKARS 513 (644)
T ss_pred HHHHHHcCCCHHHHH-HHHHHhcCCCCCCcc
Confidence 666655555554432 222222366666543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.89 E-value=4.3 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
.+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556788999999999999999999999943
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.68 E-value=1.6 Score=38.94 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=63.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 003868 287 SVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAG 366 (790)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 366 (790)
.+++.+.+.+.+....+.++.+.. .+...+....+.++..|++.++.+...++++.... .-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~----~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK----ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH----TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----cccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc
Confidence 356667777888888888888887 66567789999999999999988998888885443 34455666777777
Q ss_pred CHHHHHHHHHHhc
Q 003868 367 LIDEAKSLFEAMR 379 (790)
Q Consensus 367 ~~~~A~~~~~~m~ 379 (790)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777766666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.58 E-value=60 Score=33.06 Aligned_cols=127 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG--LG----ALENGRQLHAQLVHSGY---DSSLSAGNALITMYARCGVV 469 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 469 (790)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+.-. .++-..+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56667778888888887777776664443333 22 24567778888877521 1223333333322 33332
Q ss_pred ----HHHHHHHhcCCC-----CCHhHHHHHHHHHHhc-CC--hHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 470 ----EAANCVFNTMPN-----VDSVSWNAMIAALGQH-GN--GARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 470 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+.++.+|+.+.+ .|..-+.+-+-++... .. ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 334455554432 2333333333333221 11 4578999999999999988877665543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.97 E-value=53 Score=32.06 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC------------C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN------------V---DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
+.|...|...|++.+-.+++.++.. + -...|..=|+.|....+-.+-..+|++...-.-......
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455555555555555555544421 0 123566667888888877777778887664222222233
Q ss_pred HHHHHHHHH-----ccCCHHHHHHHHHHcccCCCC--CCChh---HHHHHHHHHHhcCC----hHHHHHHHHhCCCC--C
Q 003868 522 FLTVLSACN-----HAGLVKEGRRYFETMHGPYGI--PPGED---HYARFIDLLCRAGK----FSEAKDVIDSLPFK--P 585 (790)
Q Consensus 522 ~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~~---~~~~li~~~~~~g~----~~~A~~~~~~~~~~--p 585 (790)
...+++-|. +.|.+++|-.-|-++-+.|.- .|... -|..|..++.+.|- -++| -|.+ |
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCCH
Confidence 445666663 567888876554444433322 22222 34556666766651 1222 1333 4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.......|+.+|... ++. .|++++...
T Consensus 303 EIlAMTnlv~aYQ~N-dI~----eFE~Il~~~ 329 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DII----EFERILKSN 329 (440)
T ss_pred HHHHHHHHHHHHhcc-cHH----HHHHHHHhh
Confidence 445677788887544 333 455555443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.92 E-value=15 Score=41.00 Aligned_cols=183 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHhC--CCCc
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDY----------AFAGAITSCAGLGALENGRQLHAQLVHSG--YDSS 452 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~~~ 452 (790)
+-..++-.|....+++..+++.+.++.- ||.. .|.-.++--.+-|+-++|..+.-.+++.. +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4455555666666777777777777652 3221 23333443345577777777666665542 333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI---TFLTVLSAC 529 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~ 529 (790)
++||-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-
T Consensus 279 --------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 3566677642 2211 12334455566788888888877 788764 455555543
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.+. ++...++- ..-..|-..++|.|.++.-.++++- .+.+.+-.-.+|+.+|.++
T Consensus 334 G~~--Fens~Elq-------------~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEH--FENSLELQ-------------QIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--ccchHHHH-------------HHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 321 11111110 0112345567899998887777643 2345566677899999999
Q ss_pred HHHHHhcCCCCC
Q 003868 610 AEQLFQLMPHHA 621 (790)
Q Consensus 610 ~~~~~~~~p~~~ 621 (790)
.++++++.|+..
T Consensus 389 ae~mfKLk~P~W 400 (1226)
T KOG4279|consen 389 AEMMFKLKPPVW 400 (1226)
T ss_pred HHHHhccCCcee
Confidence 999999998863
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.39 E-value=43 Score=30.59 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHhCccCChhhHHHHHHHHHccCChHHHHHHH
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 305 (790)
...+++|+...+..+++.+.+.|....-.++.
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56778888888888888888888766555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.34 E-value=3.3 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=17.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555666666666666666666665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.15 E-value=3.6 Score=25.52 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
.|..+...+.+.|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456677777778888888888887776 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.85 E-value=1.9e+02 Score=37.75 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=167.2
Q ss_pred HHHHHHHHCCCHHHHHHHHhhC----CCCC-hhHHHH-HHHHHHHcCCHHHHHHHHHH-hccCChhHHHHHHHHHHhcCC
Q 003868 326 ALVTLYWKCGKVNEARDIFNQM----PERD-LVSWNA-ILSAYVSAGLIDEAKSLFEA-MRERNLLSWTVMISGLAQNGY 398 (790)
Q Consensus 326 ~li~~~~~~g~~~~A~~~f~~m----~~~~-~~~~~~-li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 398 (790)
.|..+-.+|+.+..|...+++- .+.+ ...+.. +...|..-+++|...-+... ..+++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555677888888998888883 2211 122333 33367777777666655552 22222 2233455667889
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHh
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLS-AGNALITMYARCGVVEAANCVFN 477 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~ 477 (790)
+..|...|+.+.+.+ ++...+++.++......|.++......+...... .+... .++.=+.+--+.++++..+....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3346678888887777787777766554444332 22222 22333444466777776666555
Q ss_pred cCCCCCHhHHHHH--HHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHc--------
Q 003868 478 TMPNVDSVSWNAM--IAALGQ--HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM-------- 545 (790)
Q Consensus 478 ~~~~~~~~~~~~l--i~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~-------- 545 (790)
..+..+|.+. +..+.+ ..+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-++
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4455566554 222222 122222223444443321111 22222222222222211110
Q ss_pred --ccCCCCCCCh------hHHHHHHHHHHhcCChHHHHHH---HHhC----CCCC-----CHHHHHHHHHHHHHhCCHHH
Q 003868 546 --HGPYGIPPGE------DHYARFIDLLCRAGKFSEAKDV---IDSL----PFKP-----SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 546 --~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~---~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~ 605 (790)
....+..++. .-|..-+ .+.+....+.+- +++. ...| -..+|......++..|.++.
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 0011222322 1222211 122221112221 1111 1122 23589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|....-++.+..+ +..+.-.+..+-..|+-..|..++++-.+.
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888887774 468889999999999999999999988754
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=12 Score=37.39 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
..+.|-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667778899999999999999999999999988888999999999999999988887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 85/636 (13%), Positives = 167/636 (26%), Gaps = 183/636 (28%)
Query: 184 FTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDA 243
V + S+ K + S+ + R+F + + E + ++ +Y
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--- 91
Query: 244 AREFL---------------DGMSENVGVAWN---ALISGYVHRELKMLMLRIQLDEFTY 285
+FL E +N V R L LR L E
Sbjct: 92 --KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 286 TSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYW-KCGKVNEARDIF 344
+ G+ GK A + K + + +W N +
Sbjct: 150 AKNVLID---GVLGSGKTWVALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVL 199
Query: 345 NQMPERDLVSWNAILSAYVSAGLIDEA-KSLFEAMRE--RNLLSWTVMISGLA--QNGYG 399
+ + L I + S K +++ R LL + L N
Sbjct: 200 EML--QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-ALENGRQLHAQLVHSGYDSSLSAGNA 458
+ F C T + L H L H + +L+
Sbjct: 256 AKAWNAF------NLS-CKILL---TTRFKQVTDFLSAATTTHISLDH--HSMTLTPDEV 303
Query: 459 LITMYARCGVVEAANCVFNTMPNVDSVSWN----AMIAALGQHGNGARAIELYEQMLKEG 514
++ + +C +P + ++ N ++IA + G A + ++ + +
Sbjct: 304 K-SLLLKY-----LDCRPQDLPR-EVLTTNPRRLSIIAESIRDGL-AT-WDNWKHVNCDK 354
Query: 515 ILPDRITFLTVLSACNHAGLVKEGRRYFETMHG--PYG--IPPGEDHYARFIDLLCR--- 567
+ + L VL E R+ F+ + P IP LL
Sbjct: 355 LTTIIESSLNVLEP-------AEYRKMFDRL-SVFPPSAHIPT---------ILLSLIWF 397
Query: 568 AGKFSEAKDVIDSLPFKPSAPIWEALLAG------CRIHG-NIDLGIQAAEQ-------- 612
S+ V++ L K S L+ I ++L ++ +
Sbjct: 398 DVIKSDVMVVVNKL-HKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 613 ----------------------LFQLMPHH------AGTYVLLSNMYANLGRWDDAARVR 644
+ + HH L ++ + R+ +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQ---- 505
Query: 645 KLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGYVPDTK 704
K+ D +W + ++ Q + Y Y+ D
Sbjct: 506 KIRHD-------STAWNASGSILNTL----------QQLKFYKP----------YICDND 538
Query: 705 FVLHDMESDQKEYALSTHSEKLA-------VAFGLM 733
+ + ++ L E L + LM
Sbjct: 539 PKYERLVNAILDF-LPKIEENLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 9e-08
Identities = 95/690 (13%), Positives = 208/690 (30%), Gaps = 166/690 (24%)
Query: 1 MMMKNADYIRTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIY 60
+ D + + + D ++ S L++ H+I S K RL
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTL 71
Query: 61 CKSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVK-LAREMFNKTPLKMRDTVFY-N 118
+ + + +E+ + + L++ + M+ + RD ++ N
Sbjct: 72 LSKQEEMVQK-FVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQ----RDRLYNDN 123
Query: 119 AMITAYSHNSNGHAAIELFRDMRR--DDVKPDNFTFT--------SVLSALALIVEEEKQ 168
+ Y+ + ++ + +R+ +++P + ++ + + +
Sbjct: 124 QVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 169 CM--QMH-CTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPERDE 225
M ++ + + +VL L + + + + S + + E
Sbjct: 179 KMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS--IQAE 233
Query: 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLML-RIQ----- 279
L Y +N L L NV NA + K+L+ R +
Sbjct: 234 LRRLLKSKPY-ENCLLV-----LL----NV---QNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 280 LDEFTYTSVISACANSGLF-RLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVN 338
L T T + + L K + L + P L N +++ + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIR 338
Query: 339 EARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAM---RE-----RNLLS--WTV 388
+ ++ + I+ + ++ E + +F+ + LLS W
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA--GLGALENGRQLHAQLV- 445
+I + + L +P + +I S LEN LH +V
Sbjct: 399 VIKSDV-----MVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVD 451
Query: 446 ----HSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGA 501
+DS + LI P +D ++ +G H
Sbjct: 452 HYNIPKTFDS-----DDLIP------------------PYLDQYFYS----HIGHHLKNI 484
Query: 502 RAIELYEQMLKEGILPDRITFL-----TVLSACNHAG----LVKEGRRYFETMHGPYGIP 552
E + + L R FL +A N +G +++ + Y PY I
Sbjct: 485 EHPERMT-LFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPY-IC 535
Query: 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQ 612
+ Y R ++ ++D F P E L + + ++ ++ A
Sbjct: 536 DNDPKYERLVN------------AILD---FLPKI---EENLICSK-YTDL---LRIA-- 571
Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642
LM + ++A +
Sbjct: 572 ---LMAEDEAIF-------------EEAHK 585
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 9/192 (4%)
Query: 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464
L R P + A + G +L+ + Q + A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 465 RCGVVEAANCVFNTMPN-------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517
+ A+ + + +NA++ + G + + + G+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 518 DRITFLTVLSACNHAGLVKEG-RRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576
D +++ L R E M G+ A + RA
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 577 VIDSLPFKPSAP 588
V + P P
Sbjct: 258 VKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 3e-07
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 8/139 (5%)
Query: 349 ERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-------NLLSWTVMISGLAQNGYGEE 401
A + + A L + L + ++ G A+ G +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-ALENGRQLHAQLVHSGYDSSLSAGNALI 460
+ + ++ G P ++A A+ + Q+ G L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 461 TMYARCGVVEAANCVFNTM 479
+ R V++A + V T
Sbjct: 244 SEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 5e-07
Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 9/160 (5%)
Query: 10 RTLANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYA 69
A +L ++ +A + + P E + RL+ L L
Sbjct: 52 FQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVE 111
Query: 70 RTLFDEIPQ----PDIVARTTLIAAYSASDNVKLAREMF-----NKTPLKMRDTVFYNAM 120
+ + Q +D + LA + + K+ YNA+
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 121 ITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALA 160
+ ++ + + ++ + PD ++ + L +
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 18/161 (11%), Positives = 46/161 (28%), Gaps = 7/161 (4%)
Query: 272 KMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLY 331
+ ++ + + C + L + + + + +L + NA++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL-LVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 332 WKCGKVNEARDIFNQMPER----DLVSWNAILSAYVSAGLIDEA-KSLFEAMRERNLLSW 386
+ G E + + + DL+S+ A L + E M + L
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKL 234
Query: 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427
+ + + + + F TS
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 2e-06
Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 325 NALVTLYWKCGKVNEARDIFNQMPER-------DLVSWNAILSAYVSAGLIDEAKSLFEA 377
A ++ A + + L +NA++ + G E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 378 MRER----NLLSWTVMISGLAQNGYGEEGL-KLFSQMRLEGFKPCDYAFAGAITSCAGLG 432
+++ +LLS+ + + + + + QM EG K A ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 433 ALENGRQLHAQLVHSGY 449
L+ ++
Sbjct: 251 VLKAVHKVKPTFSLPPQ 267
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 12/167 (7%)
Query: 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540
+++ N RA E Y++ L + L + + +E
Sbjct: 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTADEE--- 251
Query: 541 YFETMHGPYGIPPGED------HYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEAL 593
+ + Y ED Y ++ + A+D + S+ S+ +
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Query: 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640
+ + ++ ++ P++ Y L G +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 21/196 (10%), Positives = 55/196 (28%), Gaps = 18/196 (9%)
Query: 333 KCGKVNEARDIF-----NQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN----L 383
+EA +I+ + + L+ + A S ++ S++ +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLL-YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQ 443
L + + + + G +F + R + A+ ++
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 444 LVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS-------WNAMIAALGQ 496
+ Y A I + +F + S+ W +A
Sbjct: 195 GLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253
Query: 497 HGNGARAIELYEQMLK 512
G+ A +++ ++
Sbjct: 254 IGDLASILKVEKRRFT 269
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 20/197 (10%), Positives = 61/197 (30%), Gaps = 12/197 (6%)
Query: 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTM----PNVDSVSWNAM 490
+ ++ + + + ++ A E + ++N + ++ +
Sbjct: 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 140
Query: 491 IAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550
+ + ++++ ++ + L + + FE Y
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 199
Query: 551 IPPGEDHYARFIDLLCRAGKFSEAKDVID------SLPFKPSAPIWEALLAGCRIHGNID 604
++ +ID L + + + + + SLP + S IW LA G++
Sbjct: 200 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258
Query: 605 LGIQAAEQLFQLMPHHA 621
++ ++ F
Sbjct: 259 SILKVEKRRFTAFREEY 275
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 20/172 (11%), Positives = 49/172 (28%), Gaps = 14/172 (8%)
Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSAC-NHAGLV 535
++ P + +V A L H + ++ + + TFL + ++ +
Sbjct: 60 SSAPELQAVRMFAEY--LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117
Query: 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA-KDVIDSLPFKPSAPIWEALL 594
R A + +L + + A K++ A + +
Sbjct: 118 DAALRTLHQGDSLE-------CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT 170
Query: 595 AGCRIH---GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV 643
A + + +++ + + GRW+ A V
Sbjct: 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 44/322 (13%), Positives = 90/322 (27%), Gaps = 45/322 (13%)
Query: 477 NTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVK 536
+ P + S N + + GN A+ LY + L+ + P+ + N A +++
Sbjct: 3 GSCPT-HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEF-----AAAHSNLASVLQ 54
Query: 537 EGRRYFETMHGPYGIPPGEDHYARFIDL--------------LCRAGKFSEAKDVID-SL 581
+ + E HY I + L A ++
Sbjct: 55 QQGKLQE----------ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104
Query: 582 PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD-D 639
P A L + + GNI I + +L P Y L++ + W
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164
Query: 640 AARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRKLGY 699
R++KL+ V + + + + H L + ++ + ++ L
Sbjct: 165 DERMKKLVSI--VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK 222
Query: 700 VPDTKFVLHDMESDQKEYALSTHSEKLAVAFGLMKLPGGATVRVLKNLRICGDCHNAFKF 759
P + + + LM+ G + +
Sbjct: 223 PPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTN 282
Query: 760 MSKVVGREIVVRDGKRFHHFRD 781
+ +HF D
Sbjct: 283 FRV--------KVMAEANHFID 296
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 555 EDHYARFIDLLCRAGKFSEAKDVIDS-LPFKPSAPIWEALLAGCRIH-GNIDLGIQAAEQ 612
+ ++ ++ +G ++ A +D L L A C I G I +
Sbjct: 144 QRLRSQALNAF-GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 613 LFQLMPHHAGTYVLLSNMYANLGRWDDA 640
+L + + +S +Y LG + +
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELS 230
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 14/197 (7%)
Query: 458 ALITMYARCGVVEAANCVFNTM----PNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE 513
A E + ++N + ++ + + + ++++ ++
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385
Query: 514 GILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573
+ L + + FE Y ++ +ID L + +
Sbjct: 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNN 443
Query: 574 AKDVID------SLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG--TYV 625
+ + + SLP + S IW LA G++ ++ ++ F
Sbjct: 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETA 503
Query: 626 LLSNMYANLGRWDDAAR 642
LL + Y + + +A
Sbjct: 504 LLVDRYKFMDLYPCSAS 520
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.37 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.1 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.81 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.42 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.2 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.14 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.06 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.91 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.89 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.74 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.36 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.27 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.22 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.75 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.39 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.26 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.09 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.66 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.99 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.55 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.68 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.64 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.37 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.14 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 82.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.56 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=376.67 Aligned_cols=493 Identities=10% Similarity=-0.028 Sum_probs=307.4
Q ss_pred hcCChhHHHHHhhhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhh
Q 003868 62 KSLKLVYARTLFDEIPQPDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMR 141 (790)
Q Consensus 62 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 141 (790)
+.|.+..+...+..++.++...|+.++..|.+.|++++|..+|+++....|+..+|+.++.+|.+.|++++|+.+|+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 34444444445554444455555555555555555555555555443222444455555555555555555555555443
Q ss_pred hCCCCCChhhHHHHHHHHhcchhhhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC
Q 003868 142 RDDVKPDNFTFTSVLSALALIVEEEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP 221 (790)
Q Consensus 142 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~ 221 (790)
. ..++..+++.++.+|.++ |++++|.++|+++.
T Consensus 145 ~--------------------------------------~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 145 L--------------------------------------YNRSSACRYLAAFCLVKL---------YDWQGALNLLGETN 177 (597)
T ss_dssp G--------------------------------------GGTCHHHHHHHHHHHHHT---------TCHHHHHHHHCSSC
T ss_pred c--------------------------------------cccchhHHHHHHHHHHHH---------hhHHHHHHHHhccC
Confidence 1 245667788888888998 99999999999544
Q ss_pred CC-------------------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh
Q 003868 222 ER-------------------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE 282 (790)
Q Consensus 222 ~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~ 282 (790)
.. +..+|+.++.+|.+.|++++|+++|++|. .. .|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------~~--~p~~ 233 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL----------------------MV--DAKC 233 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HH--CTTC
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------Hh--Cchh
Confidence 33 47899999999999999999999999983 32 3443
Q ss_pred h-hHHHHHHHHHccCChHH--HHHH-HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--CChhHHH
Q 003868 283 F-TYTSVISACANSGLFRL--GKQV-HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--RDLVSWN 356 (790)
Q Consensus 283 ~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~ 356 (790)
. .+..+...+...+..+. +..+ +..+.. .+......+++.++.+|.+.|++++|.++|+++.+ ++..+|+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK----EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG----GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCccccc----chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 3 33333332222211111 1111 233333 34444556677778888888999999999998887 7888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA 433 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 433 (790)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|+++.... +.+..++..+...|.+.|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 888888888888888888887764 245677888888888888888888888777542 4456666677777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 434 LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 434 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
+++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766643 33455666666666666666666666665532 35566666666666666666666666666
Q ss_pred HHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 511 LKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPG--EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 511 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 6531 2244566666666666666666666666665421 33454 556666666666666666666666654 222
Q ss_pred C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 585 P-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 585 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
| +..+|..+...|...|++++|.+.++++++++|+++.++..|+++|.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 55666666666666666666666666666666666666666666553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.88 Aligned_cols=495 Identities=11% Similarity=-0.012 Sum_probs=394.0
Q ss_pred HHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchhhhhhh
Q 003868 90 AYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVEEEKQC 169 (790)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 169 (790)
.+.+.|.+..++..|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~--------------- 122 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL--SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFW--------------- 122 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHH---------------
T ss_pred cccccCccCCCCCccccchH--HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHH---------------
Confidence 35667888888999998887 8999999999999999999999999999984 3455555444
Q ss_pred hhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccC--CCCCeeeHHHHHHHHHhCCChhHHHHH
Q 003868 170 MQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEM--PERDELSWTTMMTGYVKNDYLDAAREF 247 (790)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l 247 (790)
+..+|.+. |++++|..+|+.+ ..++..+|+.++.+|.+.|++++|+++
T Consensus 123 ---------------------l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 123 ---------------------LAQVYCCT---------GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp ---------------------HHHHHHHT---------TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHc---------CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 44445555 9999999999998 457899999999999999999999999
Q ss_pred HHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHH
Q 003868 248 LDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNAL 327 (790)
Q Consensus 248 ~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (790)
|+++...+.... ++.+. .-...+.+++..++..++.+|.+.|++++|.+.++.+.+ .++. +...+..+
T Consensus 173 ~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~-~~~~~~~l 240 (597)
T 2xpi_A 173 LGETNPFRKDEK-----NANKL--LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM----VDAK-CYEAFDQL 240 (597)
T ss_dssp HCSSCTTC-----------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHHHH
T ss_pred HhccCCcccccc-----ccccc--cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCch-hhHHHHHH
Confidence 996532210000 00000 001224556788999999999999999999999999987 4332 45566666
Q ss_pred HHHHHHCCCHHHHHHH---HhhCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCC
Q 003868 328 VTLYWKCGKVNEARDI---FNQMPE----RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGY 398 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~---f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 398 (790)
...+...+..+.+... |..+.. .....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 6555444333222111 222222 2334577778899999999999999999987 788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
+++|+.+|+++.+.+ +.+..++..++.++.+.|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999875 3477889999999999999999999999999664 66788999999999999999999999998
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCCh
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGE 555 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 555 (790)
+.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..++..++.+|.+.|++++|.++|+.+.+. .+.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDP 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 753 578899999999999999999999999999852 346689999999999999999999999999863 35578
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++..|+++.+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999999999999987 45787 7899999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|.+.|++++|.++++++.+.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=257.72 Aligned_cols=184 Identities=12% Similarity=0.150 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCCchh
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA---------LENGRQLHAQLVHSGYDSSLS 454 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~g~~~~~~ 454 (790)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888899999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 530 (790)
+||+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998863 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
+.|++++|.++|++|.+. +..|+..||+.+++.|++.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999886 9999999999999988763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=231.14 Aligned_cols=371 Identities=13% Similarity=0.123 Sum_probs=310.8
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCCh-hhHHHHHHHHHccCChHHHHHHHHHHH
Q 003868 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDE-FTYTSVISACANSGLFRLGKQVHAYLL 309 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (790)
+...+.+.|++++|.+.+.++ ....|+. ..+..+...+...|+++.|...+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~------------------------~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~ 60 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQL------------------------WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677889999999999876 2234654 445555666788899999999999888
Q ss_pred HhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---Ch
Q 003868 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NL 383 (790)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 383 (790)
+ .. +.+...+..+...|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. +.
T Consensus 61 ~----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 61 K----QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp H----HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred h----cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6 33 34678899999999999999999999998763 4 4567999999999999999999999988753 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
..+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 678888899999999999999999998763 3456788889999999999999999999998875 45577888899999
Q ss_pred HhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 539 (790)
...|++++|...|++..+ .+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987643 3678899999999999999999999999998 4565 457888889999999999999
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
..|+.+.+ ..+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.
T Consensus 292 ~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 292 DCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999886 34667888999999999999999999999886 3444 56789999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCC
Q 003868 618 PHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~ 636 (790)
|+++.+|..++.++...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 9999999999988877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=226.09 Aligned_cols=349 Identities=15% Similarity=0.141 Sum_probs=306.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSA 365 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 365 (790)
...+.+.|++++|.+.+..+.+ .. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 3456778999999999999887 43 33567788888999999999999999987653 4677899999999999
Q ss_pred CCHHHHHHHHHHhcc--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 003868 366 GLIDEAKSLFEAMRE--R-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC-DYAFAGAITSCAGLGALENGRQLH 441 (790)
Q Consensus 366 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~ 441 (790)
|++++|.+.|+++.+ | +..+|..++..+.+.|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999875 3 45689999999999999999999999998863 44 445667778888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003868 442 AQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518 (790)
Q Consensus 442 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 518 (790)
..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ ..|+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcC
Confidence 9999874 45678899999999999999999999998763 3677899999999999999999999999988 4675
Q ss_pred -hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 003868 519 -RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLA 595 (790)
Q Consensus 519 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~ 595 (790)
..++..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ . .+.+..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 468889999999999999999999999863 3445788999999999999999999999987 2 3457889999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999975
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=244.24 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---------H
Q 003868 400 EEGLKLFSQMRLEGFKPCD-YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV---------V 469 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 469 (790)
..+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4556667778777766543 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 470 EAANCVFNTMP----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 470 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q 003868 546 HGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL---PFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 546 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 600 (790)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 987 99999999999999999999999999999998 6899999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-21 Score=209.72 Aligned_cols=322 Identities=12% Similarity=0.104 Sum_probs=270.0
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHH
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMIS 391 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~ 391 (790)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|.+.|++++|...|+++.+. +..+|..++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34677888889999999999999999988763 46778999999999999999999999988753 4678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCCchhH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCD----YAFAGA------------ITSCAGLGALENGRQLHAQLVHSGYDSSLSA 455 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~ 455 (790)
.|.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...+..+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999875 3443 344444 344888999999999999998874 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHH------
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT-FLTV------ 525 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l------ 525 (790)
+..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998764 5788999999999999999999999999997 5676654 3333
Q ss_pred ------HHHHHccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 003868 526 ------LSACNHAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEA 592 (790)
Q Consensus 526 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 592 (790)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999863 344 458899999999999999999999986 3344 6889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH------------HHHHhcC-----ChhHHHHHHHHH
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS------------NMYANLG-----RWDDAARVRKLM 647 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~m 647 (790)
+..+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5566666 455667666653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=213.86 Aligned_cols=390 Identities=11% Similarity=-0.012 Sum_probs=313.4
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHH
Q 003868 226 LSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVH 305 (790)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 305 (790)
..|......+.+.|++++|+..|+++ .... ||..++..+..++...|+++.|...+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~a----------------------l~~~--p~~~~~~~la~~~~~~g~~~~A~~~~ 62 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWA----------------------LELK--EDPVFYSNLSACYVSVGDLKKVVEMS 62 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH----------------------HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH----------------------HhcC--ccHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 34666788899999999999999988 3333 89999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHh----
Q 003868 306 AYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAM---- 378 (790)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 378 (790)
..+++ .. +.+..++..+..+|.+.|++++|...|+.+.. .+......++..+........+.+.+..+
T Consensus 63 ~~al~----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 63 TKALE----LK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHH----HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHhc----cC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 44 33678899999999999999999999998753 23334444444443332222222222100
Q ss_pred ----------------------------------cc---------C-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 003868 379 ----------------------------------RE---------R-NLLSWTVMISGLAQ---NGYGEEGLKLFSQMRL 411 (790)
Q Consensus 379 ----------------------------------~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 411 (790)
.. + +...+......+.. .|++++|+..|+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 00 1 13344555555554 8999999999999987
Q ss_pred -----cCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 003868 412 -----EGFK--------PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNT 478 (790)
Q Consensus 412 -----~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 478 (790)
..-. .+..++..+...+...|++++|...+..+.+.... ...+..+...|...|++++|.+.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3112 23456777888899999999999999999988644 88899999999999999999999997
Q ss_pred CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 479 MPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 479 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
+.+ .+...|..+...+...|++++|+..|++..+. .|+ ..++..+...+...|++++|..+++.+.+. .+.+
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 371 (514)
T 2gw1_A 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEA 371 (514)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTC
T ss_pred HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccC
Confidence 654 46778999999999999999999999999984 454 467888889999999999999999998863 3445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPS----APIWEALLAGCRI---HGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+.. .|++++|...++++++..|+++.+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 778899999999999999999999876 22222 4489999999999 999999999999999999999999
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+..++.+|...|++++|.+.+++..+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=199.24 Aligned_cols=349 Identities=12% Similarity=0.014 Sum_probs=283.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHH
Q 003868 280 LDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWN 356 (790)
Q Consensus 280 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~ 356 (790)
.+...+..+...+...|+++.|..++..+++ .. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3556788888999999999999999999987 33 33688999999999999999999999999864 3577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCh------hHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRERNL------LSWTVM------------ISGLAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
.+...|.+.|++++|.+.|+++.+.++ ..|..+ ...+.+.|++++|+..|+++.... +.+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999987543 555555 444899999999999999998763 4577
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHH-----
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DSVSWNAM----- 490 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----- 490 (790)
..+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ | +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 889999999999999999999999998874 45688999999999999999999999998753 3 45555555
Q ss_pred -------HHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 491 -------IAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 491 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
...+...|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|..+++.+.+. .+.+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 7889999999999999999998 56663 46788889999999999999999998763 34468899
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhcCC
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAG------------CRIHG-----NIDLGIQAAEQ-LFQLMP 618 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p 618 (790)
..+..+|.+.|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ +++..|
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999986 5556 45566666633 22333 56777888886 677787
Q ss_pred CCCc----------chHhhHHHHHhcCChhH
Q 003868 619 HHAG----------TYVLLSNMYANLGRWDD 639 (790)
Q Consensus 619 ~~~~----------~~~~l~~~~~~~g~~~~ 639 (790)
++.. .+..+..+|...|+.++
T Consensus 413 d~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 413 DNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 7532 34455555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-20 Score=205.19 Aligned_cols=396 Identities=10% Similarity=-0.035 Sum_probs=312.7
Q ss_pred HHHHHhhhccCCCCccCCCCCHHHHHHHHccCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhh
Q 003868 189 NALISVYVKCVSSPFVSSRSLMGAARRVFDEMP--ERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 189 ~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
..+-..|.+. |++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++
T Consensus 10 ~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 65 (514)
T 2gw1_A 10 KDKGNQFFRN---------KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA--------------- 65 (514)
T ss_dssp HHHHHHHHHT---------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHH---------------
Confidence 3344556666 99999999999885 378889999999999999999999999987
Q ss_pred hhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHH-
Q 003868 267 VHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIF- 344 (790)
Q Consensus 267 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f- 344 (790)
... .| +..++..+..++...|++++|...+..+.+ .++. +......++..+.+......+.+.+
T Consensus 66 -------l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 66 -------LEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSL----NGDF-NDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp -------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSC-CGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred -------hcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCC-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34 456888999999999999999999999988 4432 3333444444444332222222222
Q ss_pred -------------------------------------hhCCC---------C-ChhHHHHHHHHHHH---cCCHHHHHHH
Q 003868 345 -------------------------------------NQMPE---------R-DLVSWNAILSAYVS---AGLIDEAKSL 374 (790)
Q Consensus 345 -------------------------------------~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~ 374 (790)
..... | +...+......+.. .|++++|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 11110 1 13344444444454 8999999999
Q ss_pred HHHhcc-----C------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHH
Q 003868 375 FEAMRE-----R------------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENG 437 (790)
Q Consensus 375 ~~~m~~-----~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 437 (790)
|+++.+ . +..+|..+...+...|++++|+..|+++.... |+...+..+...+...|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH
Confidence 998876 2 24678899999999999999999999998865 3377888899999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG 514 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 514 (790)
...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 367 (514)
T 2gw1_A 290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK- 367 (514)
T ss_dssp GGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 99999998864 45677899999999999999999999997642 46778999999999999999999999999984
Q ss_pred CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCC-
Q 003868 515 ILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCR---AGKFSEAKDVIDSL-PFK- 584 (790)
Q Consensus 515 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~- 584 (790)
.| +..++..+...+...|++++|..+++.+.+...-.++ ...+..+...+.+ .|++++|.+.++++ ...
T Consensus 368 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 368 -FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp -STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred -cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 45 4568888999999999999999999988753122222 3488999999999 99999999999886 223
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3677899999999999999999999999999999987776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=200.96 Aligned_cols=389 Identities=10% Similarity=0.023 Sum_probs=303.9
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHH
Q 003868 225 ELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQV 304 (790)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 304 (790)
...|..+...+.+.|++++|++.|+++ .... +.+..++..+..++...|+++.|.+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~a----------------------l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 81 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYA----------------------IELD-PNEPVFYSNISACYISTGDLEKVIEF 81 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHH----------------------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH----------------------HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 456778889999999999999999987 2221 23667888899999999999999999
Q ss_pred HHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCC--
Q 003868 305 HAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERN-- 382 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 382 (790)
+..+++ .++ .+..++..+..+|.+.|++++|...|+.+. .+....+..+..+...+...+|...++.+...+
T Consensus 82 ~~~al~----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 155 (537)
T 3fp2_A 82 TTKALE----IKP-DHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155 (537)
T ss_dssp HHHHHH----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHh----cCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999997 443 367889999999999999999999997543 222233334555666666777887777775421
Q ss_pred -----------------------------------hh---HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCC
Q 003868 383 -----------------------------------LL---SWTVMISGLA--------QNGYGEEGLKLFSQMRLEGFKP 416 (790)
Q Consensus 383 -----------------------------------~~---~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p 416 (790)
.. .+..+...+. ..|++++|+.+|+++.+.. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p 233 (537)
T 3fp2_A 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--T 233 (537)
T ss_dssp ---CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--C
Confidence 00 1222222222 1247899999999998753 3
Q ss_pred C--------HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHh
Q 003868 417 C--------DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSV 485 (790)
Q Consensus 417 ~--------~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 485 (790)
+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 311 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 311 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Confidence 3 2346666677888999999999999999875 4478888999999999999999999998753 4678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|..+++.+.+. .+.+...+..+...
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 8999999999999999999999999984 454 468888999999999999999999999863 34557789999999
Q ss_pred HHhcCChHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 565 LCRAGKFSEAKDVIDSL----P----FKPSAPIWEALLAGCRIH----------GNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
+.+.|++++|.+.++++ + .......+..+...+... |++++|...++++++..|+++.++..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999876 1 111223345556677777 99999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|...|++++|.+.+++..+.
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-19 Score=198.04 Aligned_cols=294 Identities=11% Similarity=0.024 Sum_probs=223.1
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCCCChh---HHHHHHHHHHH--------cCCHHHHHHHHHHhccCCh----------hH
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPERDLV---SWNAILSAYVS--------AGLIDEAKSLFEAMRERNL----------LS 385 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~----------~~ 385 (790)
.+..|....+.+.+...+......+.. .+..+...+.. .|++++|..+|+++.+.++ .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 344455566666666666665543332 22222222221 2477888888888776432 25
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
|..+...+...|++++|+..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 677778888899999999999999885 4567788888888999999999999999998875 4567789999999999
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998753 35678999999999999999999999999985 455 45888888999999999999999
Q ss_pred HHHcccCC----CCCCChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHH
Q 003868 542 FETMHGPY----GIPPGEDHYARFIDLLCRA----------GKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 542 ~~~~~~~~----~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 605 (790)
|+.+.+.. ........+..+...|.+. |++++|...+++. ... .+..+|..+...+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 99886531 1111222344556778888 9999999999986 223 467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchH
Q 003868 606 GIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~ 625 (790)
|...+++++++.|.++....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999998865543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-15 Score=176.47 Aligned_cols=392 Identities=12% Similarity=0.144 Sum_probs=294.0
Q ss_pred hHHHHHHHhCC--CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC-C-----CeeeHHHHHHHHHhCCChh
Q 003868 171 QMHCTVVKSGT--GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE-R-----DELSWTTMMTGYVKNDYLD 242 (790)
Q Consensus 171 ~~~~~~~~~g~--~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~ 242 (790)
++.++.....+ ..++.--...+..|... |.+.+|.++++++.- + +....+.++....+. +..
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---------glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~ 1038 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTA---------DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT 1038 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhC---------CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh
Confidence 34444433332 23333345566677766 888888888877652 1 234556666666666 445
Q ss_pred HHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChh
Q 003868 243 AAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLP 322 (790)
Q Consensus 243 ~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (790)
+..+...+. +......+...|...|.+++|..+|+.... ...
T Consensus 1039 Rv~eyI~kL-----------------------------d~~d~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~ 1080 (1630)
T 1xi4_A 1039 RVMEYINRL-----------------------------DNYDAPDIANIAISNELFEEAFAIFRKFDV---------NTS 1080 (1630)
T ss_pred hHHHHHHHh-----------------------------hhccHHHHHHHHHhCCCHHHHHHHHHHcCC---------HHH
Confidence 555555543 122234466778889999999999987532 122
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHH
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 402 (790)
..+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|
T Consensus 1081 A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1081 AVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHH
Confidence 22333 337889999999999875 4668999999999999999999999774 7888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 482 (790)
++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|...
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99999877654 33333445888999999888644442 2 345566777999999999999999999985
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..+.+.+..++
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELI 1287 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHH
Confidence 48999999999999999999999876 3558899999999999999999887664 334677788999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCC-----CCCcchHhhHHHHHh
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--GNIDLGIQAAEQLFQLMP-----HHAGTYVLLSNMYAN 633 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~ 633 (790)
..|.+.|.+++|+.+++.. +.+| ....|.-|...+.+. ++..++.+.|..-..+.| .+...|.-+..+|.+
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999775 5554 334676666666554 567777888887766666 677889999999999
Q ss_pred cCChhHHHHH
Q 003868 634 LGRWDDAARV 643 (790)
Q Consensus 634 ~g~~~~a~~~ 643 (790)
.|+|+.|...
T Consensus 1368 ~~e~dnA~~t 1377 (1630)
T 1xi4_A 1368 YEEYDNAIIT 1377 (1630)
T ss_pred cccHHHHHHH
Confidence 9999999853
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-17 Score=171.94 Aligned_cols=300 Identities=12% Similarity=0.074 Sum_probs=199.5
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHH
Q 003868 321 LPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLA 394 (790)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 394 (790)
+..+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|...|+++.+. +...|..+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566677777777777777777776643 34556777777777777777777777766542 3456677777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKP---C-DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
..|++++|+..|++.... .| + ...+..+.... . ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777776653 33 2 22222221000 0 001122345666667777
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 471 AANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 471 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+|.+.|+++.+ .+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766665532 35566666777777777777777777777663 34 33566666677777777777777777766
Q ss_pred cCCCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhCCHHHHHH
Q 003868 547 GPYGIPPGEDHYA------------RFIDLLCRAGKFSEAKDVIDSL-PFKPS-A----PIWEALLAGCRIHGNIDLGIQ 608 (790)
Q Consensus 547 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 608 (790)
+. .+.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 122222222 2366688899999999888875 22333 3 234557778889999999999
Q ss_pred HHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 609 AAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 609 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++++++..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-17 Score=172.86 Aligned_cols=321 Identities=11% Similarity=0.034 Sum_probs=237.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHH
Q 003868 281 DEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNA 357 (790)
Q Consensus 281 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~ 357 (790)
|...+..+...+...|++++|...+..+++ ..+ .+..++..+...|...|++++|...|+...+ .+...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 345677888889999999999999999997 433 3678999999999999999999999998764 36678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003868 358 ILSAYVSAGLIDEAKSLFEAMRERNL------LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGL 431 (790)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 431 (790)
+...|...|++++|...|+++.+.++ ..+..+...+. ...+..+...+...
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 99999999999999999999977544 23333311100 01122233445555
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 33455666677777777777777777766543 356677778888888888888888888
Q ss_pred HHHHcCCCCChhh-HH------------HHHHHHHccCCHHHHHHHHHHcccCCCCCCCh----hHHHHHHHHHHhcCCh
Q 003868 509 QMLKEGILPDRIT-FL------------TVLSACNHAGLVKEGRRYFETMHGPYGIPPGE----DHYARFIDLLCRAGKF 571 (790)
Q Consensus 509 ~m~~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 571 (790)
+..+ ..|+... +. .+...+...|++++|...++.+.+.. +.+. ..+..+...+.+.|++
T Consensus 213 ~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCH
Confidence 8877 3455432 22 23556788899999999999887631 2222 3355678889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999876 2334 6788999999999999999999999999999999988888887766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-13 Score=158.86 Aligned_cols=562 Identities=13% Similarity=0.088 Sum_probs=345.1
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---------------CChHHHHHHHHHHhcCC
Q 003868 31 SSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---------------PDIVARTTLIAAYSASD 95 (790)
Q Consensus 31 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g 95 (790)
.+.+...+..|.+.++.-+....-.+...|...=..+.-.++|++... .|+.+....|.+.++.|
T Consensus 660 ~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~ 739 (1630)
T 1xi4_A 660 VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTG 739 (1630)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhC
Confidence 455566666666555443333333333333333334444445544431 57777888999999999
Q ss_pred ChHHHHHHHhhCCC------------C-CCCc----------------ch------HHHHHHHHHhCCCchHHHHHHHHh
Q 003868 96 NVKLAREMFNKTPL------------K-MRDT----------------VF------YNAMITAYSHNSNGHAAIELFRDM 140 (790)
Q Consensus 96 ~~~~A~~~~~~~~~------------~-~~~~----------------~~------~n~li~~~~~~g~~~~A~~~~~~m 140 (790)
++.+..++.++-.- . -+|. +. ....|.+|++.-++..+-.+...+
T Consensus 740 q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~l 819 (1630)
T 1xi4_A 740 QIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGL 819 (1630)
T ss_pred CchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhh
Confidence 87777766654221 0 0111 00 123455555555555555554444
Q ss_pred hhCCCCCChhhHHHHHHHHhc-------------chh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCC
Q 003868 141 RRDDVKPDNFTFTSVLSALAL-------------IVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSS 206 (790)
Q Consensus 141 ~~~g~~p~~~t~~~ll~~~~~-------------~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~ 206 (790)
..-. -+......||.+... ..+ .... ...+..+..| ..++.++|+|...|....
T Consensus 820 ld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~--p~LE~~~~~g-~~~~~~hnalakiyid~n------- 887 (1630)
T 1xi4_A 820 LDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLL--PWLEARIHEG-CEEPATHNALAKIYIDSN------- 887 (1630)
T ss_pred hcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhCC-CCCHHHHHHHHHHHhccC-------
Confidence 4322 223333333333311 111 1111 2233344444 468889999999998762
Q ss_pred CCCHHHHHH---------HHccCCCCCee----------eHHHHHHHHHhCCChhH-HHHHHHhcccCCcchhhHHHHhh
Q 003868 207 RSLMGAARR---------VFDEMPERDEL----------SWTTMMTGYVKNDYLDA-AREFLDGMSENVGVAWNALISGY 266 (790)
Q Consensus 207 ~g~~~~A~~---------~f~~~~~~~~~----------~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~~~~~li~~~ 266 (790)
++.+.-++ +=+-..++|+. .-..||...-+++.+.. |.-+.++ +|..-|+.++..-
T Consensus 888 -~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~~ 963 (1630)
T 1xi4_A 888 -NNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLES 963 (1630)
T ss_pred -CCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcCC
Confidence 22222110 00000112222 13345555555555543 3334343 3555566665321
Q ss_pred hhhHHHHHH----hC--ccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH-------
Q 003868 267 VHRELKMLM----LR--IQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK------- 333 (790)
Q Consensus 267 ~~~~~~m~~----~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------- 333 (790)
-.....+.+ .. -.-|+.-.+...++|...|...++.++++.++... ..+..+....+.|+.+..+
T Consensus 964 n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~--s~fs~n~~LqnlLi~tAIkaD~~Rv~ 1041 (1630)
T 1xi4_A 964 NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSEHRNLQNLLILTAIKADRTRVM 1041 (1630)
T ss_pred cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC--CcccccHHHHHHHHHHHHHhChhhHH
Confidence 111111111 11 12244445677888889999999999999998521 1122344555656554444
Q ss_pred --------------------CCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 003868 334 --------------------CGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGL 393 (790)
Q Consensus 334 --------------------~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 393 (790)
.|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++
T Consensus 1042 eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1042 EYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 4455555555555431 1111122211 445555555555544 3466888999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003868 394 AQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 473 (790)
.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999998653 466778888999999999999999998887764 44444556888999998888644
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC
Q 003868 474 CVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP 553 (790)
Q Consensus 474 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 553 (790)
... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++..
T Consensus 1188 ~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------- 1248 (1630)
T 1xi4_A 1188 EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------- 1248 (1630)
T ss_pred HHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------
Confidence 443 3456677778888889999999999999884 378889999999999999999988763
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
+..+|..+..++...|++..|....... ..++..+..++..|...|.+++|+.++++.++++|.+...|..|+.+|++
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 4578888888888899999998877653 34555667888999999999999999999999999999999888888876
Q ss_pred c--CChhHHHHHHH
Q 003868 634 L--GRWDDAARVRK 645 (790)
Q Consensus 634 ~--g~~~~a~~~~~ 645 (790)
- ++..++.++|.
T Consensus 1327 y~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW 1340 (1630)
T ss_pred CCHHHHHHHHHHHH
Confidence 4 45556666555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=166.65 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCHHHHHHHHccCCCCCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHH
Q 003868 208 SLMGAARRVFDEMPERDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTS 287 (790)
Q Consensus 208 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ 287 (790)
|++++|..++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika----------------------------~D~~~y~~ 66 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA----------------------------DDPSSYME 66 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC----------------------------CCHHHHHH
Confidence 89999999999997664 9999999999999999999999754 67889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 003868 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGL 367 (790)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 367 (790)
++.++...|++++|...+....+ . .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|+
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark----~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARK----K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC---C----------------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH----h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCC
Confidence 99999999999999998877765 2 33467899999999999999999988864 777899999999999999
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHS 447 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 447 (790)
+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|......
T Consensus 138 yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---- 202 (449)
T 1b89_A 138 YDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---- 202 (449)
T ss_dssp TTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT----
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH----
Confidence 99998888877 47888888888888888888888877 2667777777777777777777332221
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 003868 448 GYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVL 526 (790)
Q Consensus 448 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 526 (790)
+.. ++.-...++..|.+.|++++|+.+++.... ..+-. ..|+.+.
T Consensus 203 -L~~-------------------------------~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~ 248 (449)
T 1b89_A 203 -IVV-------------------------------HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 248 (449)
T ss_dssp -TTT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHH
T ss_pred -HHh-------------------------------CHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHH
Confidence 111 111122355556666666666666666554 23322 2333333
Q ss_pred HHHH--ccCCHHHHHHHHHHcccCCCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 527 SACN--HAGLVKEGRRYFETMHGPYGIPP------GEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 527 ~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
-+++ +.+++.+..+.|..-. +++| +..+|.-++-.|..-++++.|...+-+-
T Consensus 249 il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3333 3344444444443222 4444 4567788888888888888887766554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-17 Score=172.19 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=186.6
Q ss_pred HHCCCHHHHHH-HHhhCCC-----C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChH
Q 003868 332 WKCGKVNEARD-IFNQMPE-----R--DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 332 ~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 400 (790)
...|++++|.. .|++... | +...|..+...+.+.|++++|...|+++.+. +..+|..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 33455555555 5554332 1 2334555555566666655555555555432 2345555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 003868 401 EGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMP 480 (790)
Q Consensus 401 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 480 (790)
+|+..|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+..+... .. ..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh
Confidence 5555555555442 224444555555555555555555555555543211 11111000000 00 00
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 481 NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 481 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
. ....+.. +..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .+.+...
T Consensus 180 ~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 180 G-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp -------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred c-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0 0011112 23333889999999999999984 555 578888999999999999999999998863 3445788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----------Ccch
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-----------AGTY 624 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~ 624 (790)
+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...+++++++.|++ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999886 333 467889999999999999999999999999998887 7889
Q ss_pred HhhHHHHHhcCChhHHHHHHHH
Q 003868 625 VLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
..++.+|...|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998774
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-16 Score=163.10 Aligned_cols=283 Identities=13% Similarity=0.043 Sum_probs=160.7
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQN 396 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 396 (790)
+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|...++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------------- 80 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH-------------------- 80 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHH--------------------
Confidence 444455555555555555555555555432 123334444445555555444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 397 GYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG-ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 397 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
++.... +.+...+..+...+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.
T Consensus 81 -----------~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 81 -----------KLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp -----------HHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------HHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 444321 112333334444444444 4444444444444332 22334445555555555555555555
Q ss_pred HhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC--
Q 003868 476 FNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPY-- 549 (790)
Q Consensus 476 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 549 (790)
|+++.+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+...+...|++++|..+++.+.+..
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 554432 23344555666666666666666666666652 333 3455666666666666666666666654321
Q ss_pred -----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 550 -----GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 550 -----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
..+.....+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...+++++++.|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 11334567777777888888888888777765 22 235567788888888888888888888888888888888
Q ss_pred chHhhHHHH-HhcCCh
Q 003868 623 TYVLLSNMY-ANLGRW 637 (790)
Q Consensus 623 ~~~~l~~~~-~~~g~~ 637 (790)
.+..++.++ ...|+.
T Consensus 306 ~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 306 SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhCch
Confidence 888888877 444543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=161.62 Aligned_cols=262 Identities=15% Similarity=0.092 Sum_probs=224.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 461 (790)
+...+..++..+...|++++|+.+|+++.... +.+...+..++..+...|++++|..++..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666667777777999999999888764 3344566677788899999999999999999874 456788899999
Q ss_pred HHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHH
Q 003868 462 MYARCG-VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVK 536 (790)
Q Consensus 462 ~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 536 (790)
.|...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 99999999998754 35778999999999999999999999999984 454 467777889999999999
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHhCCHHH
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP-----------FKPSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~ 605 (790)
+|..+++.+.+. .+.+...+..+...+.+.|++++|.+.+++.- ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 45567889999999999999999999998751 13345789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-18 Score=174.27 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=135.5
Q ss_pred HHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 332 WKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRL 411 (790)
Q Consensus 332 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (790)
-+.|++++|.++++++..|+ +|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999764 5677899999999999999999997776665
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHH
Q 003868 412 EGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMI 491 (790)
Q Consensus 412 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 491 (790)
. .++..+.+.++.+|.+.|+++++.++++ .|+..+++.+.+.|...|.+++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4557788889999999999999887774 366679999999999999999999999987 4789999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 2678999999999999999999655443 223455566788999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCC-----CCCcchHhhHHHHHhcCChhHHHH
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--GNIDLGIQAAEQLFQLMP-----HHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
++|..+++.. +.++ ...+|.-|.-++.+. ++..+.++.|..-+.+.| .++..|.-+..+|.+-++|+.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999988874 5544 456777777777655 566666666666556666 678899999999999999998886
Q ss_pred H
Q 003868 643 V 643 (790)
Q Consensus 643 ~ 643 (790)
.
T Consensus 304 t 304 (449)
T 1b89_A 304 T 304 (449)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-14 Score=156.84 Aligned_cols=366 Identities=10% Similarity=-0.033 Sum_probs=299.7
Q ss_pred CCeeeHHHHHHHHHh----CCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc----
Q 003868 223 RDELSWTTMMTGYVK----NDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN---- 294 (790)
Q Consensus 223 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~---- 294 (790)
.+..++..+-..|.. .+++++|+..|++. ... -+...+..+-..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a----------------------~~~---~~~~a~~~Lg~~y~~g~g~ 91 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRA----------------------AEQ---GYTPAEYVLGLRYMNGEGV 91 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----------------------HHT---TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----------------------HHC---CCHHHHHHHHHHHHcCCCC
Confidence 366677777777777 89999999999976 333 245566667777777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH----CCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----c
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK----CGKVNEARDIFNQMPE-RDLVSWNAILSAYVS----A 365 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~ 365 (790)
.++.++|.+.+..... .+ +...+..|..+|.. .+++++|.+.|+...+ .+..++..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~----~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAAL----KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 8899999999999987 54 56778889999998 8899999999998765 467788888888888 8
Q ss_pred CCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHH
Q 003868 366 GLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALEN 436 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~ 436 (790)
++.++|.+.|++..+. +..++..+...|.. .++.++|+..|++..+.| +...+..+...+.. .+++++
T Consensus 165 ~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8999999999988764 56788999999988 899999999999998865 45566667777765 789999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhc-----CChHHHHHH
Q 003868 437 GRQLHAQLVHSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPN-VDSVSWNAMIAALGQH-----GNGARAIEL 506 (790)
Q Consensus 437 a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~ 506 (790)
|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|... ++.++|+..
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999999998875 45677788888888 8999999999998765 4677888888888887 899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHH
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAG---LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSEAKDVID 579 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 579 (790)
|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999865 4456677777777656 889999999998874 367788889999988 899999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCC---CCcchHhhHHHHHh
Q 003868 580 SLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPH---HAGTYVLLSNMYAN 633 (790)
Q Consensus 580 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 633 (790)
+.-...+...+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 392 ~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 392 KAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 87334567888899998888 89999999999999999854 76777777776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-14 Score=153.92 Aligned_cols=350 Identities=10% Similarity=-0.021 Sum_probs=295.7
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHH----CCCHHHHHHHHhhCCC-CC
Q 003868 281 DEFTYTSVISACAN----SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWK----CGKVNEARDIFNQMPE-RD 351 (790)
Q Consensus 281 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~ 351 (790)
+...+..+-..+.. .++++.|...+....+ .+ +...+..|..+|.. .++.++|.+.|++..+ .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 55666666666766 7899999999999987 43 56788889999999 9999999999998765 46
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 352 LVSWNAILSAYVS----AGLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 352 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
..++..|...|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7788888888988 89999999999998875 56788889999987 889999999999998865 566777
Q ss_pred HHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 003868 423 GAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPN-VDSVSWNAMIAA 493 (790)
Q Consensus 423 ~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 493 (790)
.+...+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 899999999999999875 56778888999987 8899999999998764 567788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 494 LGQ----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHA-----GLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 494 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
|.. .++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 455667777777776 8999999999998874 3 45677888888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----
Q 003868 565 LCRAG---KFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN---- 633 (790)
Q Consensus 565 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 633 (790)
|.+.| ++++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 789999999887434678889999999988 899999999999998864 57889999999998
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 003868 634 LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 634 ~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++++|.+.+++..+.|.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988663
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=167.05 Aligned_cols=267 Identities=10% Similarity=-0.040 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003868 353 VSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429 (790)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 429 (790)
..|..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555555555555555555555543 233445555555555555555555555554432 222334444444444
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003868 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQ 509 (790)
Q Consensus 430 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 509 (790)
..|++++|...+..+.+.... +...+..+. .....+..+...+...|++++|+..|++
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444444444444444432100 000000000 0123344567788889999999999999
Q ss_pred HHHcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003868 510 MLKEGILP---DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP 585 (790)
Q Consensus 510 m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 585 (790)
+.+. .| +..++..+...+...|++++|..+|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ ...|
T Consensus 203 al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 203 AAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9884 45 4678888889999999999999999998863 3456788999999999999999999999886 3344
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CCcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 586 -SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------------HAGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 586 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
+..+|..+...|...|++++|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5788999999999999999999999999998776 357789999999999999998887664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=147.92 Aligned_cols=270 Identities=10% Similarity=-0.063 Sum_probs=204.6
Q ss_pred HHHHcCCHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHH
Q 003868 361 AYVSAGLIDEAKSLFEAMRERNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALEN 436 (790)
Q Consensus 361 ~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 436 (790)
-....|++.+|+..+++....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666666666554332 2334456667777777777776543 135566677777778888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003868 437 GRQLHAQLVHSGY-DSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI 515 (790)
Q Consensus 437 a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 515 (790)
|.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877764 44566777888999999999999999998 567889999999999999999999999999985
Q ss_pred CCChhhH---HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 003868 516 LPDRITF---LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIW 590 (790)
Q Consensus 516 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 590 (790)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5775422 12233344568999999999999874 5667889999999999999999999999985 3344 67789
Q ss_pred HHHHHHHHHhCCHHH-HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 591 EALLAGCRIHGNIDL-GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..++..+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999999865 678999999999999654 34566666666665433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-14 Score=156.64 Aligned_cols=389 Identities=10% Similarity=0.043 Sum_probs=285.6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGK 302 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 302 (790)
|...|..++. +.+.|++++|..+|+++. ...| +...|...+..+.+.|+.+.|.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al------------------------~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV------------------------AQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH------------------------HHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 6778999998 588999999999999872 3335 5567888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHH-HHHCCCHHHHHH----HHhhCC-----C-CChhHHHHHHHHHHH-------
Q 003868 303 QVHAYLLRTEAKPTPEFSLPVNNALVTL-YWKCGKVNEARD----IFNQMP-----E-RDLVSWNAILSAYVS------- 364 (790)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~------- 364 (790)
.+++.++. .. |++..|..++.. ....|+++.|.+ +|+... . ++...|...+....+
T Consensus 67 ~~~~ral~----~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 67 KLFQRCLM----KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHTT----TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHh----cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 99999987 43 366677777753 345677776655 666542 1 356678888776655
Q ss_pred --cCCHHHHHHHHHHhccC-Ch---hHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCC
Q 003868 365 --AGLIDEAKSLFEAMRER-NL---LSWTVMISGL-------------AQNGYGEEGLKLFSQMR------LEG---FKP 416 (790)
Q Consensus 365 --~g~~~~A~~~~~~m~~~-~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p 416 (790)
.|++++|..+|++..+. .. ..|....... .+.+++..|..++.+.. +.. ++|
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 78899999999998762 11 2333222211 12455677777776632 111 344
Q ss_pred CH--------HHHHHHHHHHHc----cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH---
Q 003868 417 CD--------YAFAGAITSCAG----LGAL----ENGRQLHAQLVHSGYDSSLSAGNALITMYAR-------CGVVE--- 470 (790)
Q Consensus 417 ~~--------~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~--- 470 (790)
+. ..|...+..... .++. +.+..++++++.. .+.+..+|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 42 233333322221 1232 3677788888876 35567888888888876 79987
Q ss_pred ----HHHHHHhcCCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHH
Q 003868 471 ----AANCVFNTMPN---V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 471 ----~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 540 (790)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998763 3 578899999999999999999999999998 57764 378888888888999999999
Q ss_pred HHHHcccCCCCCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 541 YFETMHGPYGIPPG-EDHYARFIDL-LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 541 ~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
+|+...+. +|. ...|...+.. +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+++++++.
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999863 333 3333332222 34689999999999875 2234 6789999999999999999999999999998
Q ss_pred CCCCCc----chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 617 MPHHAG----TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 617 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|.++. .|...+......|+.+.+.++.+++.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877665 666777888889999999999998875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-14 Score=156.36 Aligned_cols=396 Identities=11% Similarity=0.099 Sum_probs=288.8
Q ss_pred CchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC--C-CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchh
Q 003868 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE--R-DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAW 259 (790)
Q Consensus 183 ~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 259 (790)
-+...|..++.. .+. |+++.|+.+|+++.+ | +...|..++..+.+.|++++|..+|++.
T Consensus 11 ~~~~~w~~l~~~-~~~---------~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra-------- 72 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQN---------QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC-------- 72 (530)
T ss_dssp TCHHHHHHHHHH-HHS---------SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHH-HHh---------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Confidence 355677777773 556 999999999998864 3 6678999999999999999999999976
Q ss_pred hHHHHhhhhhHHHHHHhCccCChhhHHHHHHHH-HccCChHHHHH----HHHHHHHhcCCCCCC-CChhHHHHHHHHHHH
Q 003868 260 NALISGYVHRELKMLMLRIQLDEFTYTSVISAC-ANSGLFRLGKQ----VHAYLLRTEAKPTPE-FSLPVNNALVTLYWK 333 (790)
Q Consensus 260 ~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 333 (790)
....|+...|...+... ...|+.+.|++ +++..+.. .|.. .+..+|...+....+
T Consensus 73 ----------------l~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~---~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 73 ----------------LMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK---IGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp ----------------TTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH---TTTSTTCHHHHHHHHHHHHH
T ss_pred ----------------HhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHhc
Confidence 33447766666666533 34577776665 67666652 2332 356788888887765
Q ss_pred ---------CCCHHHHHHHHhhCCC-CCh---hHHHHHHHHH-------------HHcCCHHHHHHHHHHh------cc-
Q 003868 334 ---------CGKVNEARDIFNQMPE-RDL---VSWNAILSAY-------------VSAGLIDEAKSLFEAM------RE- 380 (790)
Q Consensus 334 ---------~g~~~~A~~~f~~m~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~- 380 (790)
.|+++.|..+|++..+ |+. ..|....... .+.+++++|..++... .+
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999765 321 2343322210 1235567777766652 11
Q ss_pred ------CC--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------c
Q 003868 381 ------RN--------LLSWTVMISGLAQN----GYG----EEGLKLFSQMRLEGFKPCDYAFAGAITSCAG-------L 431 (790)
Q Consensus 381 ------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~ 431 (790)
++ ...|...+...... ++. .+|+.+|++..... +-+...|......+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 11 24566655443332 232 37788999888752 3456667666666664 7
Q ss_pred CChH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CH-hHHHHHHHHHHhcCCh
Q 003868 432 GALE-------NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-DS-VSWNAMIAALGQHGNG 500 (790)
Q Consensus 432 g~~~-------~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~ 500 (790)
|+++ +|..+++.+++.-.+.+..++..++..+.+.|++++|.++|+++.+ | +. ..|..++..+.+.|+.
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 9987 8999999998743456788999999999999999999999998753 3 33 5899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHH-HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFLTVLSA-CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 578 (790)
++|.++|++..+. .|+. ..|...... +...|+.++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999984 4442 333332222 33689999999999998864 3446788999999999999999999999
Q ss_pred HhC----CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 579 DSL----PFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 579 ~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|++
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 886 33332 4589999999999999999999999999998853
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=159.40 Aligned_cols=363 Identities=10% Similarity=-0.028 Sum_probs=199.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhc----CCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--------
Q 003868 282 EFTYTSVISACANSGLFRLGKQVHAYLLRTE----AKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE-------- 349 (790)
Q Consensus 282 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------- 349 (790)
...|+.+-..+...|+.++|.+.+...++.. ..........+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3456667777777777777777777665421 0011122345667777777777777777766665431
Q ss_pred ---CChhHHHHHHHHHHHc--CCHHHHHHHHHHhccC---ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCCCH
Q 003868 350 ---RDLVSWNAILSAYVSA--GLIDEAKSLFEAMRER---NLLSWTVMISG---LAQNGYGEEGLKLFSQMRLEGFKPCD 418 (790)
Q Consensus 350 ---~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~---~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 418 (790)
....+++.+..++... +++++|.+.|++..+. ++..+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1233455444444443 4577777777776542 33444444433 334566677777777766542 2234
Q ss_pred HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 003868 419 YAFAGAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMI 491 (790)
Q Consensus 419 ~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 491 (790)
..+..+...+.. .+++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 444444444333 355667777777766653 34556666777777777777777777776543 2455666666
Q ss_pred HHHHhc-------------------CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 492 AALGQH-------------------GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 492 ~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
..|... +..++|...|++..+. .|+. .++..+...+...|++++|...|++..+.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--- 363 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--- 363 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---
Confidence 555432 2245566666666653 3433 45666677777777777777777776643
Q ss_pred CCChh----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 552 PPGED----HYARFID-LLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 552 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
.|+.. .+..+.. .+...|++++|++.+++. .+.|+...+... ...+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 22221 1222222 234567777777777654 344544332222 23445566677778899999999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSW 660 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 660 (790)
.|+.+|...|++++|.+.+++..+.|-......+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999998765443233334
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=160.06 Aligned_cols=248 Identities=15% Similarity=0.077 Sum_probs=171.6
Q ss_pred HcCCHHHHHH-HHHHhccC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChH
Q 003868 364 SAGLIDEAKS-LFEAMRER-------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435 (790)
Q Consensus 364 ~~g~~~~A~~-~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 435 (790)
..|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3456666665 55544321 12345555556666666666666666555532
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
+.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.+
T Consensus 95 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 --------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22334444455555555555555555554331 3556777777777788888888888888777
Q ss_pred cCCCCChhhHHH----------------HHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 003868 513 EGILPDRITFLT----------------VLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 513 ~g~~p~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
. .|+...... .+..+...|++++|..+|+.+.+.....++...+..+...|.+.|++++|.+
T Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 161 Y--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp T--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 444432111 2334448899999999999998642222257889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 577 VIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 577 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++++ ...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99886 2334 6789999999999999999999999999999999999999999999999999999999999876
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=154.75 Aligned_cols=274 Identities=11% Similarity=-0.007 Sum_probs=192.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITS 427 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 427 (790)
+...|..+...+...|++++|..+|+++.+. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3345666677777777777777777766542 34566666777777777777777777766642 3345555566666
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH--HHHhcCChHHHHH
Q 003868 428 CAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIA--ALGQHGNGARAIE 505 (790)
Q Consensus 428 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~ 505 (790)
+...|++++|...+..+.+.... +...+..+.... ++......+.. .+...|++++|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 66666666666666666654211 111111110000 01111111212 2667788999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003868 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK 584 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 584 (790)
.++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999998842 235568888888999999999999999998763 3446788999999999999999999999886 223
Q ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 585 -PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------------HAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 585 -p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|.+++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36788999999999999999999999999999998 6889999999999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-15 Score=156.33 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=161.8
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH
Q 003868 426 TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 426 ~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 502 (790)
..+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence 33333334444444443333332 23344555566666666666666666665432 356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCChh-----------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 503 AIELYEQMLKEGILPDRI-----------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+++.+.....++...+..+...|.+.|++
T Consensus 152 A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 152 ACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 8888888887 345432 223457788999999999999999987422222688999999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 572 SEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 572 ~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999986 22 346789999999999999999999999999999999999999999999999999999999999976
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=147.20 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=200.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 390 ISGLAQNGYGEEGLKLFSQMRLEGFKPCD--YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445668999999999887654 34443 3456678899999999999876644 24567788899999999999
Q ss_pred CHHHHHHHHhcCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 468 VVEAANCVFNTMP----NV-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 468 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777888999999999999999987 355678888999999999999999999
Q ss_pred HHcccCCCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 543 ETMHGPYGIPPGEDH---YARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 355321 123445555669999999999987 234578899999999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCChhH-HHHHHHHHHh
Q 003868 618 PHHAGTYVLLSNMYANLGRWDD-AARVRKLMRD 649 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 649 (790)
|+++.++..++.++...|++++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986 5789888875
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=175.12 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMR---LEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALI 460 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 460 (790)
.+||++|++|++.|+.++|.++|++|. ..|+.||.+||+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv------ 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL------ 201 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH------
Confidence 467777777777777888888887765 34788888888888888888888888888888888888777554
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 539 (790)
|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.
T Consensus 202 -------------------------TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~-- 254 (1134)
T 3spa_A 202 -------------------------SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA-- 254 (1134)
T ss_dssp -------------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH--
T ss_pred -------------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH--
Confidence 555556666666664 6788999999999999999999999887766544444
Q ss_pred HHHHHcccCCCCC----CChhHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIP----PGEDHYARFIDLLCRAG 569 (790)
Q Consensus 540 ~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g 569 (790)
.+++...+..+ |...+...|.+.|.+.+
T Consensus 255 --Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 --VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp --HGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred --HHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 34443322211 22445556777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-16 Score=175.20 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=117.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003868 449 YDSSLSAGNALITMYARCGVVEAANCVFNTMP-------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT 521 (790)
Q Consensus 449 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 521 (790)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 522 FLTVLSACNHAGL-VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 522 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
|+++|.++++.|. .++|.++|++|.+. |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 58899999999997 99999999999999888876666665554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=150.49 Aligned_cols=259 Identities=9% Similarity=-0.008 Sum_probs=161.9
Q ss_pred ChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHH
Q 003868 320 SLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGL 393 (790)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~ 393 (790)
+...+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|...|+++.+. +..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 455677888999999999999999998763 46778999999999999999999999998753 567899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH-------------H--HHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 394 AQNGYGEEGLKLFSQMRLEGFKPCDY-AFAGAI-------------T--SCAGLGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll-------------~--~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
...|++++|+..|+++.... |+.. .+..+. . .+...|++++|...+..+.+.. +.+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~----- 171 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND----- 171 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC-----
Confidence 99999999999999998753 3322 222220 1 1444555555555555555443 223
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHH
Q 003868 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVK 536 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 536 (790)
...|..+...+...|++++|+..++++.+. .|+ ..++..+...+...|+++
T Consensus 172 --------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 172 --------------------------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 344444445555555555555555555442 222 234445555555555555
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCC
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-------------SAPIWEALLAGCRIHGN 602 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~ 602 (790)
+|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 555555554431 1223445555555555555555555555543 1112 24456666666666666
Q ss_pred HHHHHHHHHHHHhc
Q 003868 603 IDLGIQAAEQLFQL 616 (790)
Q Consensus 603 ~~~a~~~~~~~~~~ 616 (790)
.++|...++++++.
T Consensus 302 ~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 302 PDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=137.10 Aligned_cols=226 Identities=11% Similarity=0.010 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY--DSSLSAGNALIT 461 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~li~ 461 (790)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345556666666666666666666665554 4444555555555555555555555554443210 00000
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 003868 462 MYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 462 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.....|..+...|...|++++|+..|++..+ ..|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHH
Confidence 0146777788888888899999999988888 45653 345667888999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++.+... .+.+...+..+...+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++..|+
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 9988752 2334677888899999999999999999886 22 346788999999999999999999999999999999
Q ss_pred CCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 620 HAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++..+..++.+|...|++++|.+.+++..+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=134.31 Aligned_cols=195 Identities=14% Similarity=0.080 Sum_probs=155.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHH
Q 003868 450 DSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTV 525 (790)
Q Consensus 450 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 525 (790)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45666778888888899999999999887654 3677888899999999999999999999998 46765 577888
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 003868 526 LSACNHA-----------GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEAL 593 (790)
Q Consensus 526 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 593 (790)
..++... |++++|...|++..+. .+.+...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998863 3445788899999999999999999999886 112788899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=142.33 Aligned_cols=374 Identities=9% Similarity=-0.060 Sum_probs=237.5
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHH
Q 003868 224 DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGK 302 (790)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 302 (790)
....||.|...+...|++++|++.|++-.+-. + ........| ...+|..+...|...|++++|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~------------~---~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELI------------Q---QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------H---HHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------H---hcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 35568999999999999999999998652100 0 000011123 3467888999999999999999
Q ss_pred HHHHHHHHhcCCC---CCCCChhHHHHHHHHHHHC--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHHcCCHHHH
Q 003868 303 QVHAYLLRTEAKP---TPEFSLPVNNALVTLYWKC--GKVNEARDIFNQMPE--R-DLVSWNAILSA---YVSAGLIDEA 371 (790)
Q Consensus 303 ~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~--g~~~~A~~~f~~m~~--~-~~~~~~~li~~---~~~~g~~~~A 371 (790)
..++.++...... .......++..+..++.+. +++++|...|++..+ | +...+..+... +...++.++|
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 9998876531111 1112345566665566554 468999999998763 4 44455555544 4456778889
Q ss_pred HHHHHHhcc---CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003868 372 KSLFEAMRE---RNLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQL 444 (790)
Q Consensus 372 ~~~~~~m~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 444 (790)
++.|++..+ .+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...+..+
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 988887764 345666666655544 567889999999988764 456677888999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhc-------------------CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHH
Q 003868 445 VHSGYDSSLSAGNALITMYARC-------------------GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGAR 502 (790)
Q Consensus 445 ~~~g~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 502 (790)
.+.. +.+..++..+...|... +..+.|...|+...+ .+..+|..+...|...|++++
T Consensus 274 l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 274 LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 9874 44566777777666432 235567777766542 356678889999999999999
Q ss_pred HHHHHHHHHHcCCCCChh----hHHHHHH-HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 503 AIELYEQMLKEGILPDRI----TFLTVLS-ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 503 A~~~~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
|++.|++..+. .|+.. .+..+.. ...+.|+.++|+..|++..+ +.|+........ +.+.++
T Consensus 353 A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~ 418 (472)
T 4g1t_A 353 AEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKI 418 (472)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHH
Confidence 99999999985 44432 2223322 34578999999999999875 455543322222 223333
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 578 IDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 578 ~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+++. .. +.+..+|..|...+...|++++|++.|++++++.|.+|.+...++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3332 12 235678999999999999999999999999999999888777665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=135.68 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEG--FKPC----DYAFAG 423 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 423 (790)
...|..+...+...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999988764 567889999999999999999999999987742 1222 456667
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 503 (790)
+...+...|++++|...+..+.+.. |+. . .+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~-------------------------------~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------D-------------------------------ILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------H-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------H-------------------------------HHHHHhHHHHH
Confidence 7777777777777777777777653 221 1 23334555566
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 003868 504 IELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL- 581 (790)
Q Consensus 504 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 581 (790)
+..++++.. ..|+. ..+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666555 23333 34555555666666666666666666542 2334566667777777777777777777665
Q ss_pred CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCCCcchHhhH
Q 003868 582 PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM------PHHAGTYVLLS 628 (790)
Q Consensus 582 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 628 (790)
...| +...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 2223 46678888888888888888888888888887 66655555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-13 Score=134.55 Aligned_cols=240 Identities=11% Similarity=-0.086 Sum_probs=175.6
Q ss_pred cCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFK---PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA 472 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 472 (790)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34567777777776654211 134456666666777777777777777777653 34566777778888888888888
Q ss_pred HHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC
Q 003868 473 NCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549 (790)
Q Consensus 473 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 549 (790)
.+.|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|..+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888876653 3577888888999999999999999999988 5677766666666667789999999999877653
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++..|++..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 34444444 4777778888889999988875 32232 467889999999999999999999999999987744
Q ss_pred hHhhHHHHHhcCChhHHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~ 644 (790)
..+.++...|++++|.+.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 4467788999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=134.22 Aligned_cols=244 Identities=11% Similarity=-0.063 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPC--DYAFAGAITSC 428 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 428 (790)
.+......+...|++++|...|++..+. +...|..+...|...|++++|+..|++....+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556667777777777777766542 334666666777777777777777777666321111 22355556666
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIE 505 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 505 (790)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666543 22344555555556666666666665555543 234444444412222335555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-
Q 003868 506 LYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSL- 581 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~- 581 (790)
.|++..+ ..|+. ...+..+...+...|+ +++|...+++.
T Consensus 164 ~~~~a~~--~~p~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLE--LKPNI-----------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHH--HSTTC-----------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHH--hCccc-----------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555554 23332 3333334444444443 33344433332
Q ss_pred ---CCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 582 ---PFKPS------APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 582 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888889999999999999999999999877777666554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-12 Score=136.46 Aligned_cols=344 Identities=10% Similarity=0.020 Sum_probs=237.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCH---HHHHHHHhhCCCCChhHHHHHHHHHHH
Q 003868 288 VISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKV---NEARDIFNQMPERDLVSWNAILSAYVS 364 (790)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~ 364 (790)
+...+.+.|++++|.+.+....+ .+ +...+..|..+|...|+. ++|...|+...+.+...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~----~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE----LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HT---CCTGGGTCC----------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH----CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44556778999999999999987 44 344556677778888888 899999999887777778888776666
Q ss_pred cC-----CHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChH
Q 003868 365 AG-----LIDEAKSLFEAMRER-NLLSWTVMISGLAQNGYG---EEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALE 435 (790)
Q Consensus 365 ~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 435 (790)
.+ +.++|...|++..++ +..++..+...|...+.. .++.+.+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 65 788999999998876 456888888888876654 345556666555553 334455566666667565
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc----CChHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCG---VVEAANCVFNTMPN---VDSVSWNAMIAALGQH----GNGARAIE 505 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 505 (790)
.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55554444443333344458889999999999 89999999987653 4455556677777554 69999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC-----ChHHHHHH
Q 003868 506 LYEQMLKEGILPDRITFLTVLSA-C--NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG-----KFSEAKDV 577 (790)
Q Consensus 506 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 577 (790)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 32 34455555555 3 4689999999999998864 4 6677778888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHh
Q 003868 578 IDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRD 649 (790)
Q Consensus 578 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 649 (790)
|++.- ..+...+..|...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|..++++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99988 6678888888877765 34999999999998874 567788999999975 4589999999999988
Q ss_pred CCCc
Q 003868 650 RGVK 653 (790)
Q Consensus 650 ~g~~ 653 (790)
.|..
T Consensus 387 ~g~~ 390 (452)
T 3e4b_A 387 QDTP 390 (452)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 7753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=122.28 Aligned_cols=225 Identities=11% Similarity=-0.053 Sum_probs=140.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4456666666777777777777777766652 233444445555555 555555555555555443
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc--
Q 003868 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ----HGNGARAIELYEQMLKEGILPDRITFLTVLSACNH-- 531 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 531 (790)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444445555555 566666666666665543 44555555556665
Q ss_pred --cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hC
Q 003868 532 --AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HG 601 (790)
Q Consensus 532 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 601 (790)
.+++++|..+|++..+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666543 2 34455556666666 66777777776654222345666677777777 77
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 652 (790)
++++|+..++++++..| +..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888777755 5677778888877 7888888888887766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-12 Score=123.80 Aligned_cols=194 Identities=12% Similarity=-0.014 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSAC 529 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 529 (790)
..+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence 4455555666666666666666655432 35566777777777778888888888777764 34 445667777777
Q ss_pred HccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a 606 (790)
...|++++|.++++.+.+. +..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888877652 2344 4566777777888888888888887765 222 3566777888888888888888
Q ss_pred HHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 607 IQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 607 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=121.39 Aligned_cols=208 Identities=13% Similarity=0.030 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 462 (790)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|.+.+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3456666666666666666666666665542 2233444444444444555555555444444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHH
Q 003868 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 463 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 124455666666677777777777777776663344533 4566666677777777777777
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|+.++|.+.++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 7776652 2334667777888888888888888888775 223 45667788888888899999999999999999988
Q ss_pred CCcchH
Q 003868 620 HAGTYV 625 (790)
Q Consensus 620 ~~~~~~ 625 (790)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 865443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-11 Score=119.95 Aligned_cols=195 Identities=13% Similarity=0.054 Sum_probs=143.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 527 (790)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344556666666667777777766665432 34667777777788888888888888887774 34 4456777777
Q ss_pred HHHcc-CCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH
Q 003868 528 ACNHA-GLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 528 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 603 (790)
.+... |++++|..+++.+.+. +..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 78888 8888888888887762 33333 566777888888888888888888765 2223 467788888888888888
Q ss_pred HHHHHHHHHHHhcCC-CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 604 DLGIQAAEQLFQLMP-HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8878888888888888888888888888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-12 Score=132.12 Aligned_cols=237 Identities=10% Similarity=0.036 Sum_probs=145.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003868 392 GLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGA-LENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVE 470 (790)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 470 (790)
.+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+|.+.|+++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHH
Confidence 3333333444444444444321 1123333444444444443 444444444444432 223445555555555555555
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHc-cCCHHHH-----HH
Q 003868 471 AANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNH-AGLVKEG-----RR 540 (790)
Q Consensus 471 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~a-----~~ 540 (790)
+|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+. ..|..+..++.. .|..++| +.
T Consensus 184 eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 55555555432 3566777777777777888888888888877 45544 567777777776 5554565 46
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC--------C-HHHHHH
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAG--KFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHG--------N-IDLGIQ 608 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g--------~-~~~a~~ 608 (790)
.|++..+. .+-+...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...| + .++|+.
T Consensus 262 ~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 262 YTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 67766642 2335667777777787777 5788888887764444 4567778888887763 2 588999
Q ss_pred HHHHH-HhcCCCCCcchHhhHHHHHhc
Q 003868 609 AAEQL-FQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 609 ~~~~~-~~~~p~~~~~~~~l~~~~~~~ 634 (790)
+++++ .+++|.....|..++..+...
T Consensus 340 ~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 340 LCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999 899999888888877766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-11 Score=121.72 Aligned_cols=231 Identities=10% Similarity=-0.084 Sum_probs=159.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003868 350 RDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGA 424 (790)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 424 (790)
.+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35678888999999999999999999998876 45788999999999 999999999999998876 66777777
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 003868 425 ITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 425 l~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 500 (790)
...+.. .+++++|...++...+.+ +...+..+...|.+. ....|++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 777877 888888888888877654 344444444444440 0004555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChH
Q 003868 501 ARAIELYEQMLKEGILPDRITFLTVLSACNH----AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFS 572 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 572 (790)
++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+...|.+ .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 33444445555554 56666666666665542 134555566666666 67777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCC
Q 003868 573 EAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 573 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 620 (790)
+|.+.+++.-...+...+..+...+.. .+++++|...++++++..|++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777776654212235566667777776 778888888888888877765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-12 Score=137.89 Aligned_cols=310 Identities=14% Similarity=0.079 Sum_probs=220.4
Q ss_pred HHHHHHHCCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCCH---HHHHHHHHHhccCChhHHHHHHHHHHhcC-----
Q 003868 327 LVTLYWKCGKVNEARDIFNQMPE-RDLVSWNAILSAYVSAGLI---DEAKSLFEAMRERNLLSWTVMISGLAQNG----- 397 (790)
Q Consensus 327 li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 397 (790)
+...+.+.|++++|.++|++..+ .+..++..+...|...|+. ++|.+.|++..+.++.++..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56778889999999999998765 3556677777777788888 99999999998887788888888666655
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHH
Q 003868 398 YGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGAL---ENGRQLHAQLVHSGYDSSLSAGNALITMYARCG----VVE 470 (790)
Q Consensus 398 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~ 470 (790)
+.++|+..|++....|... .+..+...|...+.. ..+.+.+......|. ......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 7789999999999877433 455555556555443 345555555555553 556777888888887 566
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----CCHHHHHHHHH
Q 003868 471 AANCVFNTMPNVDSVSWNAMIAALGQHG---NGARAIELYEQMLKEGILPDRITFLTVLSACNHA----GLVKEGRRYFE 543 (790)
Q Consensus 471 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~ 543 (790)
.+..+++.....++..+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6777777777777779999999999999 9999999999999976 44555556666677654 79999999999
Q ss_pred HcccCCCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Q 003868 544 TMHGPYGIPPGEDHYARFIDL-L--CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHG-----NIDLGIQAAEQLFQ 615 (790)
Q Consensus 544 ~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~ 615 (790)
... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|. .| |.++|...++++.
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 976 2345667777776 4 568999999999998743447778888888777 66 9999999999988
Q ss_pred cCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003868 616 LMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 616 ~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 652 (790)
|.++.++..|+.+|.. ..++++|.+++++..+.|.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8899999999999987 3499999999999988765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=126.26 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+...|..+...+...|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++++.+. .+.+...+..+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 166 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFG 166 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 34445555555555566666666666555531 123344555555555666666666666555542 223445555556
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
..+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...++++++..|+++..+..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666666666666665554 11 22345566666666666666666666666666666665555444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=125.82 Aligned_cols=195 Identities=14% Similarity=0.104 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 527 (790)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 445666777778888888888888877643 36778888999999999999999999999885 44 4567888889
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998863 3456788999999999999999999999886 22 3467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-11 Score=117.50 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITM 462 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 462 (790)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455666666666666666666666665532 2233344444444444444444444444444321
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHH
Q 003868 463 YARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH-GNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 463 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 540 (790)
..+...|..+...+... |++++|+..|+++.+.+..|+. ..+..+..++...|++++|..
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12455666777777777 8888888888887773334443 466777777888888888888
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-K-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. .. + .+...|..+...+...|+.+.+...++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88887752 2334677888888888888888888888775 22 2 456677777777888999999999999999999
Q ss_pred CCCCcchHhh
Q 003868 618 PHHAGTYVLL 627 (790)
Q Consensus 618 p~~~~~~~~l 627 (790)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9887655444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=119.37 Aligned_cols=189 Identities=17% Similarity=0.049 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 386 WTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+...|.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444321 1223333344444444444444444444444432 2233344444444444
Q ss_pred c-----------CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 466 C-----------GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 466 ~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 4 444444444443321 134444445555555555555555555555543 344444555555555
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDS 580 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (790)
.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++
T Consensus 164 ~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555554431 122344444455555555555555554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=115.20 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=139.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
+...|..+...|.+.|++++|++.|++..+ +.|+. .++..+..++...|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 566788888889999999999999999888 46655 5778888888999999999999988875 334456777788
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
...+...+++++|.+.+++. ... .+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999988875 223 3677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003868 640 AARVRKLMRDR 650 (790)
Q Consensus 640 a~~~~~~m~~~ 650 (790)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-12 Score=136.42 Aligned_cols=270 Identities=10% Similarity=0.011 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC---Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 003868 354 SWNAILSAYVSAGLIDEAKSLFEAMRER---NL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAF 421 (790)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~ 421 (790)
.+..+...+...|++++|...|++..+. +. ..|..+...|...|++++|+..|++.... +..| ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556677777777777777666542 21 35666666666666677776666665432 1011 12234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC--
Q 003868 422 AGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGN-- 499 (790)
Q Consensus 422 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-- 499 (790)
..+...+...|++++|...+..+.+..-. .++ ......+|..+...|...|+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~-----------~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQ---------------LGD-----------RLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTC-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hhc-----------hHHHHHHHHHHHHHHHHcCccc
Confidence 44444445555555555555444332000 000 00022345555666666666
Q ss_pred ---------------hHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----h
Q 003868 500 ---------------GARAIELYEQMLKE----GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----E 555 (790)
Q Consensus 500 ---------------~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 555 (790)
+++|++.+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 66666666655431 111111 35666667777778888887777776542110111 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------C
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL----PFKP----SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------A 621 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~ 621 (790)
..+..+...|...|++++|.+.+++. +... ...++..+...+...|++++|...++++++..+.. .
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 36677788888888888888887765 1111 14567788888899999999999999988774433 3
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|...|++++|.+.+++..+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4888999999999999999999998865
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-11 Score=120.89 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=156.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHhcCCh
Q 003868 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V----DSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 427 ~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~ 500 (790)
.+...|++++|...+..+.+.. +.+...+..+...|...|++++|.+.|++..+ + ...+|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444444332 12233444555555555555555555554432 1 233577888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (790)
++|+..|++..+. .|+. ..+..+...+...|++++|...|++..+. .+.+...+..+...+...+++++|.+.++
T Consensus 91 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 4544 68888899999999999999999998863 34456777777734445569999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcC---CCC-----CcchHhhHHHHHhcCChhHHHHHHHH
Q 003868 580 SL-PFKP-SAPIWEALLAGCRIHGN---IDLGIQAAEQLFQLM---PHH-----AGTYVLLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 580 ~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (790)
+. ...| +...|..+...+...|+ .++|...++++++.. |+. ..+|..++..|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 3344 46778888888888888 888999999998875 442 25788899999999999999999999
Q ss_pred HHh
Q 003868 647 MRD 649 (790)
Q Consensus 647 m~~ 649 (790)
..+
T Consensus 247 al~ 249 (272)
T 3u4t_A 247 ILA 249 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 976
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=123.27 Aligned_cols=236 Identities=7% Similarity=-0.136 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHhccC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003868 366 GLIDEAKSLFEAMRER-------NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 438 (790)
|++++|+..|+++.+. +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 5555666666555542 23456666666666666777777777766643 334566666667777777777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003868 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL 516 (790)
Q Consensus 439 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 516 (790)
..+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..+++.... .
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 7777776653 33466777777778888888888887776643 33333333444456668999999999887774 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 003868 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIW 590 (790)
Q Consensus 517 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 590 (790)
|+......++..+...++.++|...+..+.+. .|. ...+..+...|.+.|++++|.+.+++. ...|+. |
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--F 249 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--C
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--H
Confidence 33333344677777888888999998887753 332 467888889999999999999999876 445533 2
Q ss_pred HHHHHHHHHhCCHHHHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~ 610 (790)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 33345666777888777665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=132.57 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN-----VD----SVSWNAMIAALGQHGN--------------------GARAIE 505 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 505 (790)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554432 11 3356666666666777 777777
Q ss_pred HHHHHHHc----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 003868 506 LYEQMLKE----GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 506 ~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 576 (790)
.+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665431 111111 35666777777888888888887776542111111 2367777888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHH
Q 003868 577 VIDSL----PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 577 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87764 11112 4467778888888899999999998888774433 4577888999999999999999
Q ss_pred HHHHHHh
Q 003868 643 VRKLMRD 649 (790)
Q Consensus 643 ~~~~m~~ 649 (790)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=127.78 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=146.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhH
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHS----GYD-SSLSAGNALITMYARCGVVEAANCVFNTMPN-----VD----SVS 486 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 486 (790)
+..+...+...|++++|...+..+.+. +.. ....++..+...|...|++++|...|++..+ .+ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444444444444444443321 111 1133445555566666666666655554432 11 235
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHccCCHHHHHHH
Q 003868 487 WNAMIAALGQHGN--------------------GARAIELYEQMLKE----GILPD-RITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 487 ~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
+..+...|...|+ +++|++.+++..+. +..|. ..++..+...+...|++++|..+
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666667777777 77777777665431 11111 13566677778888888888888
Q ss_pred HHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 003868 542 FETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL----PFKPS----APIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 542 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
++...+...-.++ ...+..+...+.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8876542111111 236778888888999999998888765 11122 45677888889999999999999
Q ss_pred HHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 610 AEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 610 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++++++..|.. ..++..++.+|...|++++|.+.+++..+
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99998875443 34788999999999999999999999875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=130.62 Aligned_cols=225 Identities=8% Similarity=0.056 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCCC---CCHhHHHHHHHHH
Q 003868 419 YAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV-VEAANCVFNTMPN---VDSVSWNAMIAAL 494 (790)
Q Consensus 419 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 494 (790)
..+..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999875 5567889999999999997 9999999998864 4788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh-cCChH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR-AGKFS 572 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 572 (790)
...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..|+++.+. .+-+...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 56755 68888999999999999999999999863 34467889999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC--------
Q 003868 573 EA-----KDVIDSL-PFKP-SAPIWEALLAGCRIHG--NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG-------- 635 (790)
Q Consensus 573 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 635 (790)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666664 3445 6778999999998888 689999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-Hh
Q 003868 636 -RWDDAARVRKLM-RD 649 (790)
Q Consensus 636 -~~~~a~~~~~~m-~~ 649 (790)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 44
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=135.21 Aligned_cols=293 Identities=12% Similarity=-0.001 Sum_probs=181.6
Q ss_pred CChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCCHHHHHHHHHHhccC---------C
Q 003868 319 FSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-D----LVSWNAILSAYVSAGLIDEAKSLFEAMRER---------N 382 (790)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~ 382 (790)
.....+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|...|++..+. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455566667777777888888777776543 2 2 235666677777777777777776655321 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------hHHH
Q 003868 383 LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGF-KPC----DYAFAGAITSCAGLGA--------------------LENG 437 (790)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a 437 (790)
..+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 23556666666666666666666666543210 001 1233334444444444 3333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEG- 514 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 514 (790)
...+....+ ++..... ....+|..+...|...|++++|+..|++..+..
T Consensus 167 ~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 333333221 1111111 123456677777788888888888887776421
Q ss_pred CCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 003868 515 ILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL----P 582 (790)
Q Consensus 515 ~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 582 (790)
-.++. .++..+...+...|++++|..+++...+.. +..+ ...++..+...|.+.|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 01221 267777778888888888888888765421 1111 1456778888889999999998888765 1
Q ss_pred CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CCcchHhhHHHHHhcCChhH
Q 003868 583 FKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------HAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 583 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 639 (790)
..++ ..++..+...+...|++++|...+++++++.+. ...++..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 457788888999999999999999999887332 34577888888888887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=137.70 Aligned_cols=192 Identities=8% Similarity=-0.037 Sum_probs=152.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVV-EAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 527 (790)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 444455555555555555 555555554432 2466778888888888888888888888887 5687777888888
Q ss_pred HHHcc---------CCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----
Q 003868 528 ACNHA---------GLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA--------GKFSEAKDVIDSL-PFKP---- 585 (790)
Q Consensus 528 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p---- 585 (790)
++... |++++|...|+++.+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8999999999888763 344577888888888888 8899999999876 3344
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77889999999999999999999999999999999999999999999999999999765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=131.32 Aligned_cols=271 Identities=13% Similarity=0.013 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHhccC---------Chh
Q 003868 321 LPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DL----VSWNAILSAYVSAGLIDEAKSLFEAMRER---------NLL 384 (790)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 384 (790)
...+..+...+...|++++|...|++..+ | +. ..|..+...|...|++++|...|++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556677889999999999999998764 3 22 47888999999999999999999887642 236
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCC-----------------hHHHHHHHH
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAFAGAITSCAGLGA-----------------LENGRQLHA 442 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~i~~ 442 (790)
+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999987653 1111 22355556666666666 555555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-
Q 003868 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-LPD- 518 (790)
Q Consensus 443 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 518 (790)
+..+. +..... .....|..+...|...|++++|+..|++..+..- .++
T Consensus 208 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 208 ENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 43321 111111 0223555666667777777777777776654210 011
Q ss_pred ---hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCC
Q 003868 519 ---RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIP----PGEDHYARFIDLLCRAGKFSEAKDVIDSL-------PFK 584 (790)
Q Consensus 519 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~ 584 (790)
..++..+...+...|++++|..++++..+...-. .....+..+...|.+.|++++|.+.+++. +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 1256667777777888888887777665421100 11456777888888888888888888765 111
Q ss_pred C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 585 P-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 585 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
+ ...++..+...+...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1 1346778888899999999999999999887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-10 Score=113.64 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003868 400 EEGLKLFSQMRLEGFKPCDYAFAGAITSCA-------GLGAL-------ENGRQLHAQLVHSGYDSSLSAGNALITMYAR 465 (790)
Q Consensus 400 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 465 (790)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..+++++++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666532 233444444444443 34665 7777777777774224455677788888888
Q ss_pred cCCHHHHHHHHhcCCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH-ccCCHHHHH
Q 003868 466 CGVVEAANCVFNTMPN--V-DSV-SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACN-HAGLVKEGR 539 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~a~ 539 (790)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+. .|+. ..|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887654 3 333 7888888888888888888888888874 3433 34433333322 368888888
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P---FKP--SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
.+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888763 3345677888888888888888888888876 1 344 4567888888888888888888888888
Q ss_pred HhcCCCCCcc
Q 003868 614 FQLMPHHAGT 623 (790)
Q Consensus 614 ~~~~p~~~~~ 623 (790)
++..|+++..
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876533
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-09 Score=117.56 Aligned_cols=399 Identities=11% Similarity=0.039 Sum_probs=273.7
Q ss_pred CchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC---CCeeeHHHHHHHHHhCCC---hhHHHHHHHhcccCCc
Q 003868 183 LFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---RDELSWTTMMTGYVKNDY---LDAAREFLDGMSENVG 256 (790)
Q Consensus 183 ~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~ 256 (790)
-|...|..++....+. +.++.++.+|+++.. .....|...+..-.+.|+ ++.+..+|++-.
T Consensus 64 ~d~~~W~~yi~~~~~~---------~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal---- 130 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL---------KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL---- 130 (679)
T ss_dssp TCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----
Confidence 5777788888887777 899999999998764 366779999999899999 999999999752
Q ss_pred chhhHHHHhhhhhHHHHHHhCc--cCChhhHHHHHHHHHccCCh--------HHHHHHHHHHHHhcCCCCC-CC-ChhHH
Q 003868 257 VAWNALISGYVHRELKMLMLRI--QLDEFTYTSVISACANSGLF--------RLGKQVHAYLLRTEAKPTP-EF-SLPVN 324 (790)
Q Consensus 257 ~~~~~li~~~~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~-~~-~~~~~ 324 (790)
... .|+...|...+....+.++. +..+++|+.++.. .|. .+ +..+|
T Consensus 131 -------------------~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~---vG~~d~~s~~iW 188 (679)
T 4e6h_A 131 -------------------SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK---CAIFEPKSIQFW 188 (679)
T ss_dssp -------------------CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH---TTTTCSSCHHHH
T ss_pred -------------------HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---hCcccccchHHH
Confidence 122 37777777777766555443 3455788877753 344 33 35688
Q ss_pred HHHHHHHHH---------CCCHHHHHHHHhhCCC-CC---hhHHHH---HHHHH----------HHcCCHHHHHHHHHHh
Q 003868 325 NALVTLYWK---------CGKVNEARDIFNQMPE-RD---LVSWNA---ILSAY----------VSAGLIDEAKSLFEAM 378 (790)
Q Consensus 325 ~~li~~~~~---------~g~~~~A~~~f~~m~~-~~---~~~~~~---li~~~----------~~~g~~~~A~~~~~~m 378 (790)
...+..... .++++.+.++|++... |. ...|.. ....+ -....++.|...+.++
T Consensus 189 ~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 189 NEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 888876542 3457889999998775 21 123322 21111 0011233444444432
Q ss_pred cc------C-----------------C------hhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHHH
Q 003868 379 RE------R-----------------N------LLSWTVMISGLAQNGY-------GEEGLKLFSQMRLEGFKPCDYAFA 422 (790)
Q Consensus 379 ~~------~-----------------~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~ 422 (790)
.+ + + ...|...+..--..+. .+.+..+|++.... ++-+...|.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 10 0 0 1345555554333321 23455678777765 344666676
Q ss_pred HHHHHHHccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------C------
Q 003868 423 GAITSCAGLGALENGR-QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-------------V------ 482 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------ 482 (790)
....-+...|+.+.|. ++++.++.. .+.+...+-.++..+.+.|+++.|.++|+.+.+ |
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 7777777788888996 999999875 456777788899999999999999999987753 2
Q ss_pred ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHcccCCCCCCC
Q 003868 483 ------DSVSWNAMIAALGQHGNGARAIELYEQMLKE-GILPDRITFLTVLSACNHA-GLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 483 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
....|...+....+.|+.+.|..+|.+..+. +. +....|......-.+. ++.+.|..+|+...+. .+.+
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~ 503 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTC
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCc
Confidence 1236888888888889999999999999875 21 1223343322222233 5589999999998874 4445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP----SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
...+...++.+.+.|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 667778888888999999999999986 2223 346899999999999999999999999999999874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-11 Score=122.69 Aligned_cols=265 Identities=13% Similarity=0.008 Sum_probs=155.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCCHHHHHHHHHHhccC---------ChhHHH
Q 003868 324 NNALVTLYWKCGKVNEARDIFNQMPE--R-D----LVSWNAILSAYVSAGLIDEAKSLFEAMRER---------NLLSWT 387 (790)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~ 387 (790)
+......+...|++++|...|++..+ | + ...+..+...|...|++++|.+.+++..+. ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445556666666666666666542 2 2 234555566666666666666665554321 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGF-KPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC 466 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 466 (790)
.+...|...|++++|+..+++...... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555555555555555555555433210 01100 0022344444455555
Q ss_pred CC--------------------HHHHHHHHhcCCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C
Q 003868 467 GV--------------------VEAANCVFNTMPN---------VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGI-L 516 (790)
Q Consensus 467 g~--------------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 516 (790)
|+ +++|.+.+++... .....+..+...+...|++++|+..+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555544443321 1234566677777788888888888887764210 1
Q ss_pred CC----hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 003868 517 PD----RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL----PFK 584 (790)
Q Consensus 517 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 584 (790)
++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. +..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 126677777888888888888888876542111111 456777888889999999998888765 111
Q ss_pred CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 585 PS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 585 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778888999999999999999999988654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-11 Score=125.45 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccC---CCC-CCChh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGI-LPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGP---YGI-PPGED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 556 (790)
+++.+...|...|++++|+..|++..+..- .++. .++..+...|...|++++|..+|++..+. .+. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 444455555555555555555555443100 0111 24455555555555665555555554430 011 11234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-P---F--KPS-APIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|+..+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4555555566666666665555543 0 0 111 1123444444555555 44455444443 222223345566
Q ss_pred hHHHHHhcCChhHHHHHHHHHH
Q 003868 627 LSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
|+.+|...|++++|.+.+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 6677777777777777666664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-11 Score=134.65 Aligned_cols=163 Identities=19% Similarity=0.243 Sum_probs=139.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARF 561 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 561 (790)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 456788888888899999999999999888 56765 57888888899999999999999988752 23346788899
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 562 IDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998876 4455 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003868 640 AARVRKLMRD 649 (790)
Q Consensus 640 a~~~~~~m~~ 649 (790)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=110.09 Aligned_cols=166 Identities=10% Similarity=0.006 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 527 (790)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 456777888888888888888888887653 36778888889999999999999999998874 4544 46666777
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...++++.|...+....+ ..+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999998876 33456778889999999999999999999876 3344 67789999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 003868 606 GIQAAEQLFQLMPHHA 621 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~ 621 (790)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.4e-10 Score=113.46 Aligned_cols=211 Identities=10% Similarity=0.012 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCCC---C-CHhHHHHHHHHHHh
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYA-------RCGVV-------EAANCVFNTMPN---V-DSVSWNAMIAALGQ 496 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 496 (790)
++|..+++++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888763 566778888887776 35886 899999997654 3 56789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH-hcCChHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI--TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC-RAGKFSE 573 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 573 (790)
.|++++|..+|++..+ +.|+.. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 677654 7888889999999999999999999863 2344555554444422 3699999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCC-CCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 574 AKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL---MPH-HAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 574 A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
|.++|++. .. +.+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999886 22 236788999999999999999999999999996 443 5568888999999999999999999998
Q ss_pred HhC
Q 003868 648 RDR 650 (790)
Q Consensus 648 ~~~ 650 (790)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=122.56 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhcc--------CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 003868 352 LVSWNAILSAYVSAGLIDEAKSLFEAMRE--------RN---LLSWTVMISGLAQNGYGEEGLKLFSQMRLE------GF 414 (790)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 414 (790)
..+|..+...|...|++++|...|+++.+ .+ ..++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677777778888887777777766654 11 235566666666666666666666665542 11
Q ss_pred CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH
Q 003868 415 KP-CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAA 493 (790)
Q Consensus 415 ~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 493 (790)
.| ...++..+...+...|++++|...+..+.+.... .+..-.......|..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHHHH
Confidence 11 1223444444444445555555444444332000 0000000123345556666
Q ss_pred HHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 494 LGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+...|++++|++.|+++.+. +..|+. .++..+..++...|++++|..+++.+.+
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 112222 3455566666667777777776666553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=125.33 Aligned_cols=242 Identities=13% Similarity=0.092 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLE-------GFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAG 456 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 456 (790)
.+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 46777777777777777777777776652 112223344444455555555555555555443320
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHH
Q 003868 457 NALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSAC 529 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~ 529 (790)
.+.+..-......+|..+...|...|++++|+..|++..+. +-.|+. ..+..+...+
T Consensus 100 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 100 ----------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp ----------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 00000000013446677777888888888888888887763 222333 4677888899
Q ss_pred HccCCHHHHHHHHHHcccCC-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCCH------
Q 003868 530 NHAGLVKEGRRYFETMHGPY-----G-IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP----------FKPSA------ 587 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~~------ 587 (790)
...|++++|..+|+.+.+.. + .+.....+..+...|.+.|++++|.+.++++- ..+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 99999999999999886520 1 12234578889999999999999999987751 11111
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 -PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12222333344556666677778888888888889999999999999999999999998864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-10 Score=105.28 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 530 (790)
.+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444555556666666666666665543 24445555555555566666666666555542 22 2233444444444
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAA 610 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 610 (790)
..|++++|.++++.+.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 444444444444444321 1234455666666666667777777777
Q ss_pred HHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 611 EQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 611 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777666666666667777777777777777777666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-10 Score=120.62 Aligned_cols=230 Identities=10% Similarity=-0.033 Sum_probs=156.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--C----CCchhHHH
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLE----GFKP-CDYAFAGAITSCAGLGALENGRQLHAQLVHSG--Y----DSSLSAGN 457 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~----~~~~~~~~ 457 (790)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455556666666666665542 1111 12345555556666666666666666655431 1 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hhHH
Q 003868 458 ALITMYARCGVVEAANCVFNTMPN-----VD----SVSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDR-ITFL 523 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~ 523 (790)
.+...|...|++++|.+.|++..+ .+ ..+|..+...|...|++++|++.|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777777778888877777766542 11 246778888899999999999999888762 232433 5788
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSLPFKPSA-PIWEALLAG 596 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 596 (790)
.+..++...|++++|..++++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999998876421 112223345678888889998 89999999998655543 467788899
Q ss_pred HHHhCCHHHHHHHHHHHHhcCC
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p 618 (790)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-08 Score=110.12 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCC---CChHHHHHHHHHHhcCCC---hHHHHHHHhhCCCC
Q 003868 37 VHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQ---PDIVARTTLIAAYSASDN---VKLAREMFNKTPLK 110 (790)
Q Consensus 37 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~ 110 (790)
.++.-+... +-|...+..++..+.+.+.++.++.+|+++.. .....|...+..-.+.|+ ++.+.++|++....
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444443 45788888888888888888888888888765 345567777777777777 88888888876655
Q ss_pred C---CCcchHHHHHHHHHhCCC
Q 003868 111 M---RDTVFYNAMITAYSHNSN 129 (790)
Q Consensus 111 ~---~~~~~~n~li~~~~~~g~ 129 (790)
. |++..|...+....+.++
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~ 154 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKND 154 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCHHHHHHHHHHHHHhcc
Confidence 3 777778777766555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-09 Score=100.72 Aligned_cols=171 Identities=12% Similarity=0.036 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHH
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAAL 494 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 494 (790)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999887653 45678889999999999999999999998653 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
...|++++|.+.|+++.+.. +.+...+..+..++...|++++|..+++.+.+. .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~----------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R----------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C-----------------------
Confidence 99999999999999998852 234456666666777777777777777765532 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
+.+...|..+...+...|++++|...++++++..|+++...
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 12345666777777777888888888888888777765443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-09 Score=112.68 Aligned_cols=228 Identities=7% Similarity=-0.070 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CC----CchhH
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEG-FKPC----DYAFAGAITSCAGLGALENGRQLHAQLVHSG--YD----SSLSA 455 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g--~~----~~~~~ 455 (790)
......+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+..+.+.. .. ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 334555667788888888887776531 1122 2345556666677777777777776665431 11 11334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhhH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKE----GILPDRITF 522 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~ 522 (790)
++.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|++.|++..+. +......++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 55566666666666666665554432 1 1234555556666666666666666665541 111112345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYARFIDLLCRAGK---FSEAKDVIDSLPFKPSA-PIWEALLA 595 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~ 595 (790)
..+..++.+.|++++|..++++..+.. +.+.....+..+...+...|+ +++|...+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555556666666666666665544321 111112233444444445555 55555555554322222 23334444
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 003868 596 GCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~ 614 (790)
.|...|++++|...+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=107.86 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--Chhh
Q 003868 457 NALITMYARCGVVEAANCVFNTMPN----------V-DSVSWNAMIAALGQHGNGARAIELYEQMLKEGIL--P--DRIT 521 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 521 (790)
..+...|...|++++|...+++... + ....+..+...+...|++++|...+++.....-. | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4445555555555555555544321 1 1234445556666677777777777766553211 1 1134
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHH----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYA----RFIDLLCRAGKFSEAKDVIDSLP-FKPS-----APIW 590 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~ 590 (790)
+..+...+...|++++|..+++.......-... ..... ..+..+...|++++|...+++.. ..|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777665432010011 11111 22334667777777777777652 1111 2245
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+...|++++|...++++++..+.. ...+..++.+|...|+.++|.+.+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777788888888887776653221 13566777888888888888888777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-09 Score=104.51 Aligned_cols=204 Identities=8% Similarity=0.043 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIA 492 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 492 (790)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455777788888999999999999999999886546677777799999999999999999987653 35678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh--------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC---hhHHHHH
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILPDRI--------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG---EDHYARF 561 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 561 (790)
.|...|++++|+..|++..+ ..|+.. .|..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999988 456543 466677778889999999999999885 3554 5677778
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 562 IDLLCRAGKF--SEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 562 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
...|...|+. ++|..+. ..+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 3322221 22333343332 34556789999999999999999987776665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.5e-10 Score=120.66 Aligned_cols=176 Identities=10% Similarity=-0.011 Sum_probs=153.9
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHH
Q 003868 469 VEAANCVFNTMP---NVDSVSWNAMIAALGQHGNG-ARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFE 543 (790)
Q Consensus 469 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 543 (790)
++++.+.++... ..+...|..+...+...|++ ++|++.|++..+ ..|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555554432 24788899999999999999 999999999998 4566 4688999999999999999999999
Q ss_pred HcccCCCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--------CCHH
Q 003868 544 TMHGPYGIPPGEDHYARFIDLLCRA---------GKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH--------GNID 604 (790)
Q Consensus 544 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 604 (790)
.+.+ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 467788899999999999 9999999999986 3344 678899999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 605 LGIQAAEQLFQLMP---HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 605 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-09 Score=104.86 Aligned_cols=185 Identities=10% Similarity=-0.043 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN----VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSA 528 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 528 (790)
..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 4444444445555555555555443321 3334444444444455555555555555444 33333 234444444
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGE-------DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGC 597 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 597 (790)
+...|++++|...|+...+. .+.+. ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 44555555555555544431 11122 22344444444444444444444443 23333 12333333333
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
... +...++++..+.+.+...|..+ .....+.+++|...+++..+
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 222 2223333333333332222211 22233444899999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-09 Score=113.35 Aligned_cols=225 Identities=10% Similarity=-0.007 Sum_probs=167.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHhHHH
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSG--YD---SSLSAGNALITMYARCGVVEAANCVFNTMPN-----V-----DSVSWN 488 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 488 (790)
....+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3345678899999999999988642 11 1345788899999999999999888876532 1 245788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCCChhHHHH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGI-LPD----RITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPPGEDHYAR 560 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~ 560 (790)
.+...|...|++++|++.|++..+..- .++ ..++..+..++...|++++|..+|++..+.. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 899999999999999999998876310 112 2467788889999999999999999887510 12223667888
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL----PF--KPS-APIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|+..+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999875 11 222 2345555566667777 67777777662 2223344677899999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-07 Score=100.78 Aligned_cols=259 Identities=8% Similarity=0.004 Sum_probs=147.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcc-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--CC-HHH
Q 003868 357 AILSAYVSAGLIDEAKSLFEAMRE-----RNL----LSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFK--PC-DYA 420 (790)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t 420 (790)
.+...+...|++++|...+++..+ .+. .+++.+...+...|++++|...+++.... +.. |. ...
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 334444445555555555544432 111 23455666677777788888877776542 211 21 233
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 003868 421 FAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNG 500 (790)
Q Consensus 421 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 500 (790)
+..+...+...|++++|...+....+..-..... ....+|..+...+...|++
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ---------------------------QQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG---------------------------GGHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH---------------------------HHHHHHHHHHHHHHHcCCH
Confidence 4445555666666666666666655432111000 0123455566667777888
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHcccCCCCCC--ChhHHHHHHHHHHhcCChH
Q 003868 501 ARAIELYEQMLKEGILPDR-ITFL-----TVLSACNHAGLVKEGRRYFETMHGPYGIPP--GEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 572 (790)
++|...+++.....-.++. ..+. ..+..+...|++++|..+++.........+ ....+..+...+...|+++
T Consensus 191 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 270 (373)
T 1hz4_A 191 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270 (373)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 8888888777653222221 1111 222346678888888888888775311111 1224567778888889999
Q ss_pred HHHHHHHhC-------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHH
Q 003868 573 EAKDVIDSL-------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVR 644 (790)
Q Consensus 573 ~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (790)
+|.+.+++. +..++. ..+..+..++...|+.++|...+++++++.++.. ....+...| +....++
T Consensus 271 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll 343 (373)
T 1hz4_A 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQL 343 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHH
Confidence 988888765 111122 2556667778889999999999999888754321 122233334 4555555
Q ss_pred HHHHh
Q 003868 645 KLMRD 649 (790)
Q Consensus 645 ~~m~~ 649 (790)
+.+..
T Consensus 344 ~~~~~ 348 (373)
T 1hz4_A 344 RQLIQ 348 (373)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=120.96 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLS 527 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 527 (790)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456677777778888888888887776653 3567888888888888888888888888888 56765 57888888
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888889999999888888752 2335678888889999999999999888875 4455 46788888999999999999
Q ss_pred HHHHHHHHHhcCC
Q 003868 606 GIQAAEQLFQLMP 618 (790)
Q Consensus 606 a~~~~~~~~~~~p 618 (790)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=101.19 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHS------GY-DSSLSAGNALITMYARCGVVEAANCVFNTMPN----------- 481 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------- 481 (790)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++..+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444445555555444444432 11 11223344444444455555544444443321
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 482 VDSVSWNAMIAALGQHGNGARAIELYEQMLKE------GILPDR-ITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 482 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
....+|..+...|...|++++|+..|++..+. +-.|+. .++..+..++...|++++|..+++.+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334555566666666666666666665542 112222 345556666666666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-08 Score=97.18 Aligned_cols=203 Identities=12% Similarity=0.016 Sum_probs=128.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hh
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--V-D---SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR----IT 521 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 521 (790)
+...+..+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++..+. .|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 445555566666677777777777766543 2 2 455666666677777777777777776663 3322 23
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 003868 522 FLTVLSACNH--------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEAL 593 (790)
Q Consensus 522 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 593 (790)
+..+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 4455555555 666777777776666431 11122222211111000000 1124667
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeE
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANL----------GRWDDAARVRKLMRDRGVKKEPGCSW 660 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 660 (790)
...+...|+++.|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+.. |
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p---- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P---- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C----
Confidence 7888999999999999999999999854 5788999999877 99999999999987532 2
Q ss_pred EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 003868 661 IEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696 (790)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 696 (790)
.+|...+....+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666677777666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-09 Score=104.59 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=150.2
Q ss_pred HccCChHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCHhHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHS-------GYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----------VDSVSWNAM 490 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 490 (790)
...|++++|...+++..+. ..+....++..+...|...|++++|...|+++.+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877653 2233466788889999999999999988886542 134578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC-----C-CCCChhH
Q 003868 491 IAALGQHGNGARAIELYEQMLKE------GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPY-----G-IPPGEDH 557 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~ 557 (790)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+++.+.. . .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988763 11233 3467788888899999999999998876520 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhcCCCC
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSLP----------FKP-SAPIWEALLAGCRIHGN------IDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 620 (790)
+..+...|.+.|++++|.+.+++.- ..+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888999999999998887651 122 22234444333333222 222222222222233445
Q ss_pred CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 621 AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998865
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=103.65 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 003868 368 IDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMRLE----GFKPC-DYAFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 368 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
+++|...|++. +..|...|++++|+..|++.... |-+++ ..+|..+..++...|++++|...+.
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666655543 55666677777777766665432 21111 2355555556666666666666655
Q ss_pred HHHH
Q 003868 443 QLVH 446 (790)
Q Consensus 443 ~~~~ 446 (790)
.+++
T Consensus 102 ~Al~ 105 (292)
T 1qqe_A 102 NAIQ 105 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=92.63 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----hH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMPN--VD----SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI----TF 522 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 522 (790)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455566778888888888888887653 32 24677778888888888888888888887 355543 33
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 003868 523 LTVLSACNH------------------AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFK 584 (790)
Q Consensus 523 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 584 (790)
..+..++.. .|+.++|...|+.+.+.+ +-+...+..+... +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH---------
Confidence 444444443 456677777777666532 1112222111110 0000000
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---cchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---GTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999986 57899999999999999999999999876553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-08 Score=86.05 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 565 (790)
.|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 34555556666666666666666665531 112334444444455555555555555544331
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHH
Q 003868 566 CRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRK 645 (790)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (790)
.+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 122344555666666666666777777777666666666666677777777777777777776
Q ss_pred HHHh
Q 003868 646 LMRD 649 (790)
Q Consensus 646 ~m~~ 649 (790)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-09 Score=96.25 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=93.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh
Q 003868 493 ALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF 571 (790)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 571 (790)
.+...|+.++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666666666666544 23333 34555666677777777777777766642 233466677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQA-AEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3344 466777888888888887665544 588888888888888888887777764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=93.88 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 437 GRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN-----VDSVSWNAMIAALGQHGNGARAIELYEQML 511 (790)
Q Consensus 437 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 511 (790)
+...++.....+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444443 23334444666666667777777777666522 244556666777777777777777777777
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HccC--CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 512 KEGILP-----DRITFLTVLSAC--NHAG--LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 512 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+ ..| +..+...+..++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6 456 245555555552 2223 677777777777653 3442222333336677777777777765431
Q ss_pred -C----------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc
Q 003868 583 -F----------KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 583 -~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 622 (790)
. .| |+.+...++......|+ .|.++++++.+..|+++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 1 13 33444455555555565 667777777777777753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-08 Score=97.13 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhH
Q 003868 416 PCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS---LSAGNALITMYARCGVVEAANCVFNTMPN--V----DSVS 486 (790)
Q Consensus 416 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 486 (790)
.+...+-.....+.+.|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455667777888899999999999999999874 223 66788899999999999999999998753 2 2456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHH
Q 003868 487 WNAMIAALGQ--------HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 487 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
+..+..++.. .|++++|+..|++..+ ..|+........ ..+..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~-------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT-------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH-------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH-------------HHHHHHHHH-----HHHHH
Confidence 7778888888 9999999999999998 457653221111 111111100 01225
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCc-
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL----PFKP-SAPIWEALLAGCRIH----------GNIDLGIQAAEQLFQLMPHHAG- 622 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 622 (790)
..+...|.+.|++++|...|++. |..+ ....+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888889999998888775 2222 234677777777755 8999999999999999999853
Q ss_pred --chHhhHHHHHhcCChhH
Q 003868 623 --TYVLLSNMYANLGRWDD 639 (790)
Q Consensus 623 --~~~~l~~~~~~~g~~~~ 639 (790)
++..+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 44455555555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.7e-08 Score=97.41 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=137.8
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 472 ANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 472 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
..+.+......+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33344433334556677788888999999999999999998 56755 57888888999999999999999998753
Q ss_pred CCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CcchH
Q 003868 551 IPPGEDHYAR-FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH--AGTYV 625 (790)
Q Consensus 551 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 625 (790)
.|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 455443332 333467788888898888775 3334 67889999999999999999999999999999998 78999
Q ss_pred hhHHHHHhcCChhHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-07 Score=91.84 Aligned_cols=174 Identities=9% Similarity=-0.006 Sum_probs=134.1
Q ss_pred HHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 472 ANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 472 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666766542 45666678889999999999999999998775432333 5677888899999999999999999975
Q ss_pred CCCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Q 003868 548 PYGIPP-----GEDHYARFIDL--LCRAG--KFSEAKDVIDSLP-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQL- 616 (790)
Q Consensus 548 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 616 (790)
..| +..+...|..+ ....| +.++|..+|+++. ..|+...-..+++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 366 24555555555 33334 9999999999983 3455333445555788999999999999988776
Q ss_pred ---------CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 617 ---------MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 617 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+|+|+.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888887 899999999873
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-07 Score=91.80 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=130.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-----C----hhHHHHHHHHHHhcCChHHHHHHH
Q 003868 336 KVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-----N----LLSWTVMISGLAQNGYGEEGLKLF 406 (790)
Q Consensus 336 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~ 406 (790)
++++|...|+.. ...|...|++++|.+.|++..+- + ..+|+.+...|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888776653 66788899999999988877541 2 357889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhcCCC--C-
Q 003868 407 SQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARC-GVVEAANCVFNTMPN--V- 482 (790)
Q Consensus 407 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~--~- 482 (790)
++.... +...|+...+ ..+++.+...|... |++++|...|++..+ +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 887652 1112222211 12334455555554 666666666555432 0
Q ss_pred --C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 483 --D----SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRI------TFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 483 --~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
+ ..+|+.+...+.+.|++++|+..|++..+........ .|..+..++...|++++|...|++..+
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--- 227 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--- 227 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 1 3457777888888888888888888888742221111 456666777888888888888888764
Q ss_pred CCCChh------HHHHHHHHHH--hcCChHHHHHHHHhC
Q 003868 551 IPPGED------HYARFIDLLC--RAGKFSEAKDVIDSL 581 (790)
Q Consensus 551 ~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~ 581 (790)
+.|+.. .+..++..+. ..+++++|.+.|+++
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 233311 2334445553 456677888877765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=83.11 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNH 531 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 531 (790)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++.+.+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567889999999999999999998753 467889999999999999999999999998853 2344567777777888
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVID 579 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (790)
.|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88888888888776642 12233344444444444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-08 Score=90.22 Aligned_cols=122 Identities=13% Similarity=0.059 Sum_probs=101.8
Q ss_pred HHHHHHccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 003868 525 VLSACNHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHG 601 (790)
Q Consensus 525 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 601 (790)
|...+...|++++|+..++..... .| +...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344556778999999999988752 34 3456678899999999999999999986 4445 6789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHH-HHHHHh
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARV-RKLMRD 649 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 649 (790)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 477654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=114.64 Aligned_cols=168 Identities=10% Similarity=-0.043 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHc
Q 003868 464 ARCGVVEAANCVFNTMP-----------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNH 531 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 531 (790)
...|++++|.+.|++.. ..+...|..+...+.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 44555555555555443 12444555566666666666666666666665 34433 455555566666
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666542 22244556666666666666666 6666554 2233 445666666666666667667666
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=87.54 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=102.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH-HH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL-LC 566 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~ 566 (790)
.+...+.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+.+.+. .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344455566666666666666554 33433 35555556666666666666666666542 2233222222111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CcchHhhHHHHHhcCChhHHHH
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH--AGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222333456666554 2344 57788999999999999999999999999999875 5589999999999999999999
Q ss_pred HHHHHHh
Q 003868 643 VRKLMRD 649 (790)
Q Consensus 643 ~~~~m~~ 649 (790)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-07 Score=87.85 Aligned_cols=161 Identities=10% Similarity=-0.056 Sum_probs=119.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----CHHHHHHHHHHcccCCCCCCChhHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAG----LVKEGRRYFETMHGPYGIPPGEDHY 558 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 558 (790)
++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55566666666767777777777777777654 44555556666666 5 778888888777653 245566
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 559 ARFIDLLCR----AGKFSEAKDVIDSLP-FKPS---APIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 559 ~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
..|..+|.. .+++++|.+.|++.- ..|. +..+..|...|.. .++.++|+..++++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 677777766 778888888888763 3332 6778888888877 78999999999999988 677788999
Q ss_pred hHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 003868 627 LSNMYANL-G-----RWDDAARVRKLMRDRGV 652 (790)
Q Consensus 627 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 652 (790)
|+.+|... | ++++|.+++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999887664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-06 Score=90.86 Aligned_cols=320 Identities=9% Similarity=0.015 Sum_probs=142.9
Q ss_pred cCChhhHHHHHHHHHccCC-hHHHHHHHHHHHHhcCCCCC-CCChhHHHHHHHHHH----HCCCHHHHHHHHhhCCC-CC
Q 003868 279 QLDEFTYTSVISACANSGL-FRLGKQVHAYLLRTEAKPTP-EFSLPVNNALVTLYW----KCGKVNEARDIFNQMPE-RD 351 (790)
Q Consensus 279 ~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~-~~ 351 (790)
.|+...|...+....+.++ .+....+|+.++.. .|. ..+..+|...+..+. ..|+++.+.++|++... |.
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~---vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~ 120 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ---FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM 120 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH---STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh
Confidence 4566666666665555442 34455666666542 232 224556666555443 23456667777766543 21
Q ss_pred --h-hHHHHHHHHHH-------------HcCCHHHHHHHHHHhcc----CChhHHHHHHHHHHhcC--C-----hHHHHH
Q 003868 352 --L-VSWNAILSAYV-------------SAGLIDEAKSLFEAMRE----RNLLSWTVMISGLAQNG--Y-----GEEGLK 404 (790)
Q Consensus 352 --~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g--~-----~~~A~~ 404 (790)
. ..|......-. ..+.+..|...++.+.. .+...|...+..-...+ - .+.+..
T Consensus 121 ~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 1 11221111000 00122233333333221 13335555444432221 1 234567
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhcCC---
Q 003868 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAA-NCVFNTMP--- 480 (790)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~--- 480 (790)
+|+++.... +.+...|...+.-+.+.|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+...
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhc
Confidence 787777643 444566666666677788888888888888887 444433332 2222111111 11111100
Q ss_pred ---------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-ccCCHHHHHHHHHHcccCCC
Q 003868 481 ---------NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACN-HAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 481 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~ 550 (790)
......|...+....+.++.+.|..+|++. +.. .++...|......-. ..++.+.|..+|+...+.++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 001123444444444455555555555555 210 111122221111111 12245555555555554321
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLF 614 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 614 (790)
.+...+...++...+.|+.+.|..+|++.. .....|...+..-..+|+.+.+..++++..
T Consensus 352 --~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 352 --DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122334444555555555555555555542 234445555544445555555544444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=105.72 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHH
Q 003868 466 CGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRY 541 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 541 (790)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998865 3678899999999999999999999999998 56654 6788888999999999999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhc
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH---GNIDLGIQAAEQLFQL 616 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 616 (790)
+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998863 3445788999999999999999999999886 3334 577889999999999 9999999999999999
Q ss_pred CCCCCcchHhhH
Q 003868 617 MPHHAGTYVLLS 628 (790)
Q Consensus 617 ~p~~~~~~~~l~ 628 (790)
+|++...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=96.39 Aligned_cols=179 Identities=11% Similarity=0.070 Sum_probs=119.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI---LPD--RITFLTVL 526 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll 526 (790)
..|...|++++|...|.+..+ . -..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666665554432 1 134677778888888888888888887765211 121 24667777
Q ss_pred HHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHH
Q 003868 527 SACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLP----FKPS----APIWEALL 594 (790)
Q Consensus 527 ~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll 594 (790)
..|.. |++++|+.+|++..+.+ +..+ ...++..+...|.+.|++++|.+.|++.- ..++ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 78877 99999999988876421 1111 14577888899999999999999988751 1122 22566666
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcc-----hHhhHHHHHhcCChhHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGT-----YVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 642 (790)
..+...|+++.|...+++++ +.|....+ ...++..| ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77778899999999999999 98876543 33445545 5677665555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=85.02 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888899999999999999876 2334 7788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999865
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-07 Score=102.27 Aligned_cols=145 Identities=12% Similarity=0.000 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 432 GALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 432 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665542 33455666667777777777777777765543 245566666677777777777777777
Q ss_pred HHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 003868 509 QMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA---GKFSEAKDVIDSL 581 (790)
Q Consensus 509 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 581 (790)
+..+. .|+. ..+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76663 4443 45666666667777777777777766642 233455666666666666 7777777666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=83.15 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=88.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 550 GIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 550 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 456778888899999999999999886 3344 67899999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChhHHHHHHHHHHhC
Q 003868 627 LSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=103.69 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=140.1
Q ss_pred HccCChHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcC
Q 003868 429 AGLGALENGRQLHAQLVH-------SGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHG 498 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 498 (790)
...|++++|.+.++.+.+ ...+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667888888888888771 12245567788888888889999999998887764 46778888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 003868 499 NGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDV 577 (790)
Q Consensus 499 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 577 (790)
++++|++.|++..+ ..|+. ..+..+..++...|++++ .+.|+++.+. .+.+...|..+..+|.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988 56755 577888888999999999 9999988752 344567888999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCCc
Q 003868 578 IDSL-PFKPS-APIWEALLAGCRIHGN-----IDLGIQAAEQLFQLMPHHAG 622 (790)
Q Consensus 578 ~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 622 (790)
|++. ...|+ ...|..+..++...++ .+...++.+.+..+.+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9987 46675 4567777777766555 23344444444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=87.77 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 566 (790)
+.+...|.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+++.+. -+.+...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3477888888999999999988888 45654 57778888888889999999999888762 3445677888888776
Q ss_pred hcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 003868 567 RAGK--FSEAKDVIDSLPFKPSAP--IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 567 ~~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
..|. .+.+...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6554 344556666553 34433 34445556677788999999999999988864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=85.11 Aligned_cols=186 Identities=7% Similarity=-0.047 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHHHH
Q 003868 418 DYAFAGAITSCAGLGALENGRQLHAQLVHSGYDS--SLSAGNALITMYARCGVVEAANCVFNTMPN--VD-S---VSWNA 489 (790)
Q Consensus 418 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 489 (790)
...+......+.+.|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864221 235778889999999999999999998753 32 1 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 490 MIAALGQ------------------HGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 490 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
+..++.. .|+.++|+..|+++.+ ..|+........ ...+ .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~---~~l~------~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT---KRLV------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH---HHHH------HHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH---HHHH------HHHHHH------
Confidence 5555543 5789999999999998 567764321111 1100 011111
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112235677889999999999999876 22333 2468888999999999999999999999988887554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.6e-06 Score=83.90 Aligned_cols=161 Identities=6% Similarity=-0.063 Sum_probs=118.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEG-ILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYA 559 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 559 (790)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887632 122211 2334556667778899999999888763112222 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------Ccch
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSLP-----F---KPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTY 624 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 624 (790)
.+...|...|++++|.+.++++- . .+. ..++..+...|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999988887651 1 122 2378889999999999999999999999875433 5678
Q ss_pred HhhHHHHHhcCC-hhHHHHHHHHHHh
Q 003868 625 VLLSNMYANLGR-WDDAARVRKLMRD 649 (790)
Q Consensus 625 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 649 (790)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-07 Score=78.98 Aligned_cols=106 Identities=14% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 334444455555555555555554431 2223444555555555555555555555443 2222 34456666666666
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
.|++++|+..++++++++|+++.++..|.+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=83.90 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4455566777888888888888764 457778888888888899999998888775 22 3467789999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC----------------cchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA----------------GTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.+++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999998887 88999999999999999999999999764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-07 Score=83.57 Aligned_cols=155 Identities=10% Similarity=0.010 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-H-HH
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLS-A-CN 530 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a-~~ 530 (790)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.. +..+.. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 34556667777788888888877764 3566777777777788888888888777665 344332 222211 1 11
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHhCCHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS---APIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 606 (790)
..+...+|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 212223456677766642 2334677777888888888888888888765 33443 45777888888888888888
Q ss_pred HHHHHHHHh
Q 003868 607 IQAAEQLFQ 615 (790)
Q Consensus 607 ~~~~~~~~~ 615 (790)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-06 Score=79.38 Aligned_cols=127 Identities=6% Similarity=0.024 Sum_probs=61.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003868 389 MISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGV 468 (790)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 468 (790)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5556666666666666666665542 2234455555555556666666666666655543 3334455555555543332
Q ss_pred --HHHHHHHHhcCCCCCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003868 469 --VEAANCVFNTMPNVDSVS--WNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 469 --~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 519 (790)
.+.+...|+....++... |..+..++...|++++|+..|++.++ +.|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 233444444444443322 22223333444555555555555554 34443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=96.04 Aligned_cols=196 Identities=11% Similarity=-0.001 Sum_probs=144.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003868 431 LGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQM 510 (790)
Q Consensus 431 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 510 (790)
.|++++|.+++++..+..-. . .+...++++.|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777766654211 1 01114788888877665 466788999999999999988
Q ss_pred HHcCC---CC-C-hhhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 511 LKEGI---LP-D-RITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 511 ~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
.+... .+ . ..+|..+...|...|++++|...|++..+.+ |... ...++..+...|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 75311 11 1 2478888889999999999999998775421 2111 24577888899988 9999999998875
Q ss_pred ----CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC------cchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 582 ----PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA------GTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 582 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
+...+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|.+.+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 35788899999999999999999999999866553 26677788888999999999999998
Q ss_pred H
Q 003868 648 R 648 (790)
Q Consensus 648 ~ 648 (790)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.8e-07 Score=79.11 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455667778889999999999999876 3334 6788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=87.45 Aligned_cols=164 Identities=6% Similarity=-0.070 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHcccCCC--CCCC--hh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-----ITFLTVLSACNHAGLVKEGRRYFETMHGPYG--IPPG--ED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 556 (790)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788899999999999888874222111 1233455566788899999999988764211 1122 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C----C
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSLP----FKPS-----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--H----A 621 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 621 (790)
.|+.+...|...|++++|.+.+++.- ..|+ ..++..+...|...|++++|+..+++++++.++ + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999887651 1222 257888999999999999999999999877432 1 4
Q ss_pred cchHhhHHHHHhcCChhHH-HHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDA-ARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 649 (790)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.7e-07 Score=76.86 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=89.1
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 551 IPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 551 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 356778899999999999999999886 3344 678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003868 628 SNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 628 ~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=83.31 Aligned_cols=144 Identities=8% Similarity=-0.103 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCC
Q 003868 456 GNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGL 534 (790)
Q Consensus 456 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 534 (790)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456666777777777777777777667777777777777777777777777777763 343 3456666666677777
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+++|...|+.+.+...-.+... +...| +...| ....|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777766654211111000 00000 01223 2357888888999999999999999999
Q ss_pred HhcCCCC
Q 003868 614 FQLMPHH 620 (790)
Q Consensus 614 ~~~~p~~ 620 (790)
++..|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-06 Score=83.91 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHH-HHH
Q 003868 417 CDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--VDSVSWNAM-IAA 493 (790)
Q Consensus 417 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 493 (790)
+...+..+...+...|++++|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555566667777777777777776653 34566777788888888888888888888765 443332222 223
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+...++.++|+..|++..+ ..|+. ..+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5566777778888888777 35554 56677777777888888888888777753111112456667777777777777
Q ss_pred HHHHHHHh
Q 003868 573 EAKDVIDS 580 (790)
Q Consensus 573 ~A~~~~~~ 580 (790)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 76666544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=78.92 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=85.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444455555555555555555431 2234555666666666667777776666654 22 2356678888888899
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHH--HHHhcCChhHHHHHHHHHHh
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSN--MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|++++|...++++++..|.+...+..+.. .+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998877754444 47888999999998887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-05 Score=85.91 Aligned_cols=172 Identities=8% Similarity=-0.071 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 470 EAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 470 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+...+.....-+...+.. -..+.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~--~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAV--YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHH--HHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHH--HHHHHHHHH
Confidence 345566766543 35777888888888899999999999999985 6654332221111111111 111221111
Q ss_pred cCCC-----CCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Q 003868 547 GPYG-----IPP---GEDHYARFIDLLCRAGKFSEAKDVIDSLPFK-PSAPIWEALLAGCRI-HGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 547 ~~~~-----~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 616 (790)
. .. ..+ ....|...++.+.+.|.++.|.++|++...+ .+..+|......-.. .++.+.|..+++.+++.
T Consensus 271 ~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 M-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred h-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 00 001 1245667777777888899999999887322 234455433322222 34689999999999998
Q ss_pred CCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 617 MPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 617 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
.|+++..+...++...+.|+.+.|..+++..
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777777788788889999999988886
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-07 Score=93.60 Aligned_cols=187 Identities=7% Similarity=-0.036 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACN 530 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 530 (790)
.+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+ +.|+. ..+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555555555555555554431 2455556666666666666666666666655 34433 35555556666
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGE-DHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
..|++++|...|+...+. .|+. ..+...+....+..+...... .......++..+...+ ..+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 666666666666655431 1110 011111111111111111111 1122223344443333 222 26888889999
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhc-CChhHHHHHHHHHHh
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANL-GRWDDAARVRKLMRD 649 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 649 (790)
++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999888877777777777766 778899999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.3e-06 Score=77.75 Aligned_cols=169 Identities=11% Similarity=-0.008 Sum_probs=112.0
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 003868 371 AKSLFEAMRER-NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG----ALENGRQLHAQLV 445 (790)
Q Consensus 371 A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~i~~~~~ 445 (790)
|.+.|++..+. ++.++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555554443 55667777777777777778887777777654 34455555555555 5 7777777777776
Q ss_pred HhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----HhHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003868 446 HSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMPNVD-----SVSWNAMIAALGQ----HGNGARAIELYEQMLK 512 (790)
Q Consensus 446 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 512 (790)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .++.++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566677777766 677888888887766532 5677777777777 6778888888888777
Q ss_pred cCCCCChhhHHHHHHHHHcc-C-----CHHHHHHHHHHcccC
Q 003868 513 EGILPDRITFLTVLSACNHA-G-----LVKEGRRYFETMHGP 548 (790)
Q Consensus 513 ~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 548 (790)
. .++...+..|...|... | +.++|..+|+...+.
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4 23444555566665432 2 677777777776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=73.40 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=73.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++ . .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1233455556666666666666666666554 1 1235667788888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLG 635 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 635 (790)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8889999999999999888888888888877776544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.8e-05 Score=75.45 Aligned_cols=158 Identities=7% Similarity=0.004 Sum_probs=109.8
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC------
Q 003868 467 GVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA--RAIELYEQMLKEGILP-DRITFLTVLSACNHAGL------ 534 (790)
Q Consensus 467 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 534 (790)
++++++.++++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 556666666666543 46677777777777777777 888888888884 34 44566655555566665
Q ss_pred HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHhCCHHHHHH
Q 003868 535 VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE-AKDVIDSL-PF----KPSAPIWEALLAGCRIHGNIDLGIQ 608 (790)
Q Consensus 535 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 608 (790)
+++++++++.+.. ..+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7888888887775 345567778888888888887544 44566654 11 2366778888888888888888888
Q ss_pred HHHHHHh-cCCCCCcchHhhH
Q 003868 609 AAEQLFQ-LMPHHAGTYVLLS 628 (790)
Q Consensus 609 ~~~~~~~-~~p~~~~~~~~l~ 628 (790)
+++++.+ .+|-+...|...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 8888886 6887766555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=74.27 Aligned_cols=115 Identities=7% Similarity=-0.013 Sum_probs=78.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444555555555555555555432 2234455566666666666666666666554 222 34667888888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988888999988888875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=79.87 Aligned_cols=191 Identities=10% Similarity=0.073 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHhcCCC---CCHhHHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCC-Chhh
Q 003868 455 AGNALITMYARCG--VVEAANCVFNTMPN---VDSVSWNAMIAAL----GQH---GNGARAIELYEQMLKEGILP-DRIT 521 (790)
Q Consensus 455 ~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~t 521 (790)
+++.--..+...| +++++++.++.+.. .+...|+.-...+ ... +++++++++++++.+. .| |...
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3444444444444 56666666655442 3455666544444 444 7899999999999984 45 4457
Q ss_pred HHHHHHHHHccCCHH--HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCC-CCHHHHH
Q 003868 522 FLTVLSACNHAGLVK--EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK------FSEAKDVIDSL-PFK-PSAPIWE 591 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~ 591 (790)
|..-.....+.|.++ +++++++.+.+. .+-|...|+.-..++.+.|+ ++++++.++++ ... -|...|+
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~ 224 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence 777777777888887 999999999873 34567777777777777776 88999988876 333 4788999
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHHhcC---CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 592 ALLAGCRIHGNI-DLGIQAAEQLFQLM---PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 592 ~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...+.+.|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999888874 44556777777766 78888999999999999999999999999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=74.49 Aligned_cols=114 Identities=7% Similarity=-0.024 Sum_probs=72.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|..+|+...+. .+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444445555555555555554431 1223445555555556666666666655543 11 235667777888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888876654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-05 Score=78.21 Aligned_cols=203 Identities=9% Similarity=-0.062 Sum_probs=137.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhcCCC
Q 003868 405 LFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSA---GNALITMYARCGVVEAANCVFNTMPN 481 (790)
Q Consensus 405 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~ 481 (790)
.+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|.+.+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444456777776666655532211 1111111222222 22346778889999999999987543
Q ss_pred -----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 482 -----VD----SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDR----ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 482 -----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
++ ...+..+...+...|++++|+..|++..+.... ++. .+++.+..+|...|++++|..+|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 113334666677788999999999999984322 222 2688888999999999999999998874
Q ss_pred CC----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhC-CHHHHHHHHHHH
Q 003868 548 PY----GIPPG-EDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHG-NIDLGIQAAEQL 613 (790)
Q Consensus 548 ~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 613 (790)
.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+...+...| ++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 11222 347888999999999999999988765 22222 568888999999999 579999999998
Q ss_pred Hhc
Q 003868 614 FQL 616 (790)
Q Consensus 614 ~~~ 616 (790)
+++
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-06 Score=82.48 Aligned_cols=135 Identities=15% Similarity=-0.011 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC--hhHHHHHHHHH
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG--EDHYARFIDLL 565 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 565 (790)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556667777777777777776653 455544445555677788888888888755431 1 111 23566777888
Q ss_pred HhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 566 CRAGKFSEAKDVIDSLP---FKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 566 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+.|++++|++.|++.. ..|. ...+..+..++...|+.++|...+++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 2143 236677777888888888888888888888887 5554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=88.10 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=107.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+++.++-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 455677777788888888888888888777 34443210 0011111000 0135677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775 2333 6778999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 003868 641 -ARVRKLMR 648 (790)
Q Consensus 641 -~~~~~~m~ 648 (790)
.+.++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-06 Score=73.57 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667778888899999999888875 2333 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999998875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=91.78 Aligned_cols=117 Identities=9% Similarity=0.037 Sum_probs=86.3
Q ss_pred HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHH
Q 003868 528 ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDL 605 (790)
Q Consensus 528 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 605 (790)
.+...|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666542 2334566777777777777777777777665 3334 56788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHH--HHhcCChhHHHHHHHH
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNM--YANLGRWDDAARVRKL 646 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 646 (790)
|++.+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8899999999999884
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=78.42 Aligned_cols=118 Identities=9% Similarity=0.065 Sum_probs=76.1
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHhCCH--HH
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAG-CRIHGNI--DL 605 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~-~~~~g~~--~~ 605 (790)
..|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ... .+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555555555555432 2334556666666666666666666666654 112 245566666666 6677777 88
Q ss_pred HHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 606 GIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 606 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888888888778888888888888888888888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-06 Score=83.43 Aligned_cols=181 Identities=9% Similarity=-0.053 Sum_probs=133.6
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChh--------------
Q 003868 465 RCGVVEAANCVFNTMPN---VDSVSWNAM-------IAALGQHGNGARAIELYEQMLKEGILPDRI-------------- 520 (790)
Q Consensus 465 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 520 (790)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777788888877653 245677766 3445555555555555554443 455431
Q ss_pred --------hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 003868 521 --------TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSA----P 588 (790)
Q Consensus 521 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 588 (790)
....+..++...|++++|.+.|..+... .|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233556778899999999999998853 354435666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC-CCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLM--PH-HAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
++..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68888999999999999999999998543 44 4457789999999999999999999999863
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=76.29 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CC----C
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMP--HH----A 621 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~ 621 (790)
.+..+...|...|++++|.+.+++. +..| ...++..+...+...|++++|...++++++..+ ++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444455555555554444432 1111 123456666667777777777777777765422 11 1
Q ss_pred cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 622 GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356778888888888888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.9e-06 Score=70.40 Aligned_cols=98 Identities=9% Similarity=0.122 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCcchHhhHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH--HAGTYVLLSN 629 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 629 (790)
+...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667778888888888888888765 22 336678888899999999999999999999999999 8899999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCC
Q 003868 630 MYANL-GRWDDAARVRKLMRDRG 651 (790)
Q Consensus 630 ~~~~~-g~~~~a~~~~~~m~~~g 651 (790)
+|... |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.3e-07 Score=85.51 Aligned_cols=172 Identities=9% Similarity=0.008 Sum_probs=104.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLV 535 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 535 (790)
.+......|+++++.+.|+...+ .....|..+...+...|++++|+..|++..+ ..|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hH
Confidence 34444555666666666664432 2345667777778888888888888888877 33432211100 00
Q ss_pred HHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 536 KEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 536 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+.-. .. .....|..+..+|.+.|++++|.+.+++. ... .+...|..+..++...|+++.|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01355667777888888888888888765 223 36778889999999999999999999999
Q ss_pred HhcCCCCCcchHhhHHHHHhcCChhHHH-HHHHHHHhCC
Q 003868 614 FQLMPHHAGTYVLLSNMYANLGRWDDAA-RVRKLMRDRG 651 (790)
Q Consensus 614 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 651 (790)
+++.|+++.++..+..++...|+.+++. ..++.|...|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999888877 5566665443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=77.51 Aligned_cols=108 Identities=7% Similarity=-0.042 Sum_probs=79.4
Q ss_pred CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 003868 515 ILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWE 591 (790)
Q Consensus 515 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 591 (790)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34443 34555666777777777777777777642 2345667777778888888888888888775 2233 567788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.+..++...|++++|+..+++++++.|+++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999999886553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-06 Score=72.34 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999886 3344 6788999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 003868 635 GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 g~~~~a~~~~~~m~~ 649 (790)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999865
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-06 Score=74.07 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=86.2
Q ss_pred CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 003868 515 ILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWE 591 (790)
Q Consensus 515 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 591 (790)
+.|+. ..+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 36777778888999999999999988862 3446788888999999999999999999886 3344 567889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 592 ALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 592 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=8e-06 Score=71.68 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888888888888888775 2233 577888899999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003868 631 YANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~~ 649 (790)
|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-06 Score=75.41 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666677777777777777777665 2233 5667777777777788888888888888888888777888888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.+++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888777765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=80.76 Aligned_cols=162 Identities=8% Similarity=-0.062 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VD------SVSWNAMIAALGQHGNGARAIELYEQMLKEGIL---PD--RI 520 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 520 (790)
.+...+..|...|++++|.+.++...+ .. ...+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888888888888764321 11 122344556677788999999999988763211 11 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHccc---CCCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHG---PYGIPP--GEDHYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SA 587 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 587 (790)
+++.+...|...|++++|..+|+++.+ .....+ ....|..+...|.+.|++++|.+.+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888889999999999999988762 211111 1257888899999999999999988765 1111 15
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHHhc
Q 003868 588 PIWEALLAGCRIHGNIDLG-IQAAEQLFQL 616 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 616 (790)
.+|..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.9e-06 Score=75.22 Aligned_cols=126 Identities=9% Similarity=0.109 Sum_probs=97.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH-HHhcCCh-
Q 003868 495 GQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL-LCRAGKF- 571 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~- 571 (790)
...|++++|+..|++..+. .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 4567888888888888874 45 4467888888888999999999999988763 23466778888888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 572 -SEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 572 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 567888999999999999999999999999999985543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=67.74 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345566667777777777777777765 222 356677777777778888888888888888888888778888888888
Q ss_pred hcCChhHHHHHHHHHHh
Q 003868 633 NLGRWDDAARVRKLMRD 649 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~ 649 (790)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=70.06 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=88.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHH
Q 003868 552 PPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSN 629 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 629 (790)
+.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999986 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|...|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.5e-06 Score=70.64 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCc-------chHh
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAG-------TYVL 626 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 626 (790)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999998875 3344 5778999999999999999999999999999887754 5677
Q ss_pred hHHHHHhcCChhHHHHHHHHHHh
Q 003868 627 LSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999998765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=68.27 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999886 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003868 633 NLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 633 ~~g~~~~a~~~~~~m~~~ 650 (790)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=67.07 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=64.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555554431 1223445555555666666666666665554 1222 45677777788888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888888887666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=69.97 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556666667777777777777777664 44555 456777777777777888888888877777777777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003868 629 NMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 629 ~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888877777754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=69.89 Aligned_cols=129 Identities=13% Similarity=-0.004 Sum_probs=95.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILP-DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++...+. .+.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 345667777888888888888888888874 44 4567777778888888899998888888763 344567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEA--LLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
..+.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888999999999888776 2233 4445533 334467788999999888876554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=71.26 Aligned_cols=105 Identities=9% Similarity=-0.060 Sum_probs=71.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455556666666666666666542 2335556666777777777777777777664 2223 4567778888888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999988887655444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.3e-05 Score=70.51 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=54.4
Q ss_pred HCCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc------C---ChhHHHHHHHHHHhcCChH
Q 003868 333 KCGKVNEARD---IFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE------R---NLLSWTVMISGLAQNGYGE 400 (790)
Q Consensus 333 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~---~~~~~~~li~~~~~~g~~~ 400 (790)
..|++++|.+ .+..-+.....++..+...+...|++++|...|++..+ . ...++..+...|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 44332222344555555666666666666655555433 1 1234555556666666666
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003868 401 EGLKLFSQMRLE----GFKP--CDYAFAGAITSCAGLGALENGRQLHAQLV 445 (790)
Q Consensus 401 ~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 445 (790)
+|...+++.... +-.| ....+..+...+...|++++|...+.+..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666554432 1011 12233444444555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=71.35 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=74.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 598 (790)
.+..+...+...|++++|..+|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444555555666666666666655542 2234566666777777777777777777664 2233 5778889999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
..|++++|+..++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999988665444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=71.39 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CC
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKPS-------------APIWEALLAGCRIHGNIDLGIQAAEQLFQL-------MP 618 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p 618 (790)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3444455555555555555543 11121 338888888999999999999999999999 99
Q ss_pred CCCcch----HhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 619 HHAGTY----VLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 619 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++...| ..++.++...|++++|.+.|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998899 9999999999999999999998865
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=70.96 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357888889999999999999999999999999999999999999999999999999999875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=4e-05 Score=67.99 Aligned_cols=108 Identities=8% Similarity=-0.017 Sum_probs=68.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG----EDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALL 594 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 594 (790)
.+..+...+...|++++|..+|+...+ ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444455555555555555443 2233 345555666666666666666666554 2223 566778888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
..+...|++++|...+++++++.|++...+..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888899999999999999999998876666665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=78.48 Aligned_cols=187 Identities=7% Similarity=-0.101 Sum_probs=111.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHh
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQ 496 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 496 (790)
.+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555542 33566677777788888888888888877654 356788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
.|++++|+..|++..+. .|+.. .+...+...... .++..... .... ..+.+......+...+ .|+.++|.
T Consensus 85 ~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNS-IEER-RIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp TTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 99999999999988763 34321 111122211111 11111111 1111 3444555555554433 68889999
Q ss_pred HHHHhC-CCCCCHH-HHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 003868 576 DVIDSL-PFKPSAP-IWEALLAGCRIH-GNIDLGIQAAEQLFQL 616 (790)
Q Consensus 576 ~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 616 (790)
+.+++. ...|+.. ....+...+... +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888775 5566554 344444444444 6678888888887664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=68.07 Aligned_cols=108 Identities=8% Similarity=-0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444445555555555555554431 2233455566666666666666666666554 2233 45677777778888
Q ss_pred hCCHHHHHHHHHHHHhcC------CCCCcchHhhHHHH
Q 003868 600 HGNIDLGIQAAEQLFQLM------PHHAGTYVLLSNMY 631 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 631 (790)
.|++++|+..++++++++ |.+......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888887 66655555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-05 Score=67.40 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999886 223 46788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003868 632 ANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~~ 650 (790)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=85.20 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=57.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 572 (790)
+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 4445666666666666655 2343 345555555666666666666666665542 2233455556666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHHhCCHHHHHHHHH
Q 003868 573 EAKDVIDSL-PFKP-SAPIWEALLAG--CRIHGNIDLGIQAAE 611 (790)
Q Consensus 573 ~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 611 (790)
+|.+.+++. ...| +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554 1122 22233333333 555566666666666
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0015 Score=66.34 Aligned_cols=99 Identities=7% Similarity=-0.052 Sum_probs=55.4
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC-
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGA--------RAIELYEQMLKEGILP-DRITFLTVLSACNHAGL- 534 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~- 534 (790)
+++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|+.......+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 45566666665554 34555655444444444444 777777777774 33 44456555555555554
Q ss_pred ------HHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC
Q 003868 535 ------VKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK 570 (790)
Q Consensus 535 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 570 (790)
+++++++++++.. ..+-|...|..+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5666666666654 234455566655555555554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.98 E-value=4.6e-05 Score=78.72 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003868 452 SLSAGNALITMYARCGVVEAANCVFNTMPN--V-D---------------SVSWNAMIAALGQHGNGARAIELYEQMLKE 513 (790)
Q Consensus 452 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 513 (790)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999987653 2 2 356666666777777777777777776663
Q ss_pred CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 514 GILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 514 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.|+ ...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 343 335555555566666666666666555531 122233444444444444444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-06 Score=70.22 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=62.1
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHH
Q 003868 567 RAGKFSEAKDVIDSL-PF---KP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
..|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 33 23 34567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 003868 642 RVRKLMRD 649 (790)
Q Consensus 642 ~~~~~m~~ 649 (790)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-05 Score=67.46 Aligned_cols=99 Identities=9% Similarity=-0.104 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGC 597 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 597 (790)
..+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44555555566666666666666655542 2334556666666677777777777666654 2223 566788888888
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCC
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHH 620 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~ 620 (790)
...|+++.|+..+++++++.|++
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHChhH
Confidence 88888888888888888887773
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=68.07 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---CcchHhhHHHH
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKPS-A---PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH---AGTYVLLSNMY 631 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 631 (790)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4556667778888887777765 11222 2 467777788888888888888888888888888 66688888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|.+.++++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888865
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=66.82 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------CcchH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-P-FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-------AGTYV 625 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 625 (790)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888775 2 23467788888999999999999999999999987766 77889
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-05 Score=74.92 Aligned_cols=147 Identities=8% Similarity=-0.026 Sum_probs=88.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCH----------------
Q 003868 424 AITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDS---------------- 484 (790)
Q Consensus 424 ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 484 (790)
........|+++.+.+.+....... ......+..+...|.+.|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444555677777777665433221 12345677788899999999999999987653 222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
..|..+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+...+. .+.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 56777777778888888888888887773 443 346666667777777777777777776642 2234455556666
Q ss_pred HHHhcCChHHHH
Q 003868 564 LLCRAGKFSEAK 575 (790)
Q Consensus 564 ~~~~~g~~~~A~ 575 (790)
++.+.|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 665555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.6e-05 Score=64.31 Aligned_cols=115 Identities=6% Similarity=-0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..|..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|..+++.+.+. .|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~----------- 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV---GR----------- 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---cc-----------
Confidence 344555555555666666666666555531 112234444444444555555555554444321 00
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 565 LCRAGKFSEAKDVIDSLPFKPS----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...++ ..+|..+...+...|+++.|...++++++..| ++.....+..+..
T Consensus 70 -----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 -----------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -----------------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 00112 45566777777777888888888888887776 4455555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00039 Score=70.65 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 003868 436 NGRQLHAQLVHSGYDSSLSAGNALITMYARCG-VVEAANCVFNTMPN---VDSVSWNAMIAALGQH-G-NGARAIELYEQ 509 (790)
Q Consensus 436 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 509 (790)
+|.++...++... +.+..+++.--..+...| .++++.+.++.+.. .+..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444332 222333444444444455 46777777766543 4667888777777665 6 89999999999
Q ss_pred HHHcCCCCC-hhhHHHHHHHHHccCCHH--------HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC-------hHH
Q 003868 510 MLKEGILPD-RITFLTVLSACNHAGLVK--------EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK-------FSE 573 (790)
Q Consensus 510 m~~~g~~p~-~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~ 573 (790)
+.+ ..|. ...|..-.....+.|.++ +++++++++.+. .+-|...|+....++.+.++ +++
T Consensus 151 ~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 997 4454 456665555555555555 899999998863 35577888888888888876 688
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhcC------CCCCcchH
Q 003868 574 AKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI--------------------DLGIQAAEQLFQLM------PHHAGTYV 625 (790)
Q Consensus 574 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 625 (790)
+++.++++ ...| |...|+-+-..+...|+. .........+.... +..+.+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 88888775 3334 788999888877776654 22222222222222 34556778
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHh
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+++|.+.|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0011 Score=67.16 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC-hHHHHHHHH
Q 003868 435 ENGRQLHAQLVHSGYDSSLSAGNALITMYARCG--VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN-GARAIELYE 508 (790)
Q Consensus 435 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 508 (790)
+++..++..+.... +-+..+++.-.-.+.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444432 233344444444444444 24555555555442 355555555555555555 366666666
Q ss_pred HHHH
Q 003868 509 QMLK 512 (790)
Q Consensus 509 ~m~~ 512 (790)
++.+
T Consensus 170 ~~I~ 173 (331)
T 3dss_A 170 SLIT 173 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-05 Score=62.55 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=61.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP---SAPIWEALLAG 596 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 596 (790)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4444555555566666666666655542 2234455666666666666677666666654 2223 45667777777
Q ss_pred HHHh-CCHHHHHHHHHHHHhcCCCCC
Q 003868 597 CRIH-GNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 597 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 621 (790)
+... |++++|++.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888877777653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=6.4e-05 Score=81.29 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=104.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
....|..+...|.+.|++++|+..|++.++ +.|+...+. -+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~-----------~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLS-----------EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCC-----------HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCC-----------hHHHHH-HHH--------HHHHHHHHHH
Confidence 345777888888889999999999998887 344432110 011110 000 1135677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 563 DLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775 2333 6778999999999999999999999999999999999999999999999999987
Q ss_pred HH-HHHHHHh
Q 003868 641 AR-VRKLMRD 649 (790)
Q Consensus 641 ~~-~~~~m~~ 649 (790)
.+ .++.|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 74 4555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00098 Score=67.40 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=130.4
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCC-HHHHHHH
Q 003868 469 VEAANCVFNTMPN---VDSVSWNAMIAALGQHGN--GARAIELYEQMLKEGILP-DRITFLTVLSACNHAGL-VKEGRRY 541 (790)
Q Consensus 469 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 541 (790)
++++..+++.+.. .+..+|+.-...+...|+ +++++.+++++.+. .| |...|+.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666543 578889888888888784 89999999999985 44 44577776667777787 6999999
Q ss_pred HHHcccCCCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHh-----
Q 003868 542 FETMHGPYGIPPGEDHYARFIDLLCRA--------------GKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIH----- 600 (790)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~----- 600 (790)
+..+.+. .+-|...|+....++.+. +.++++++.+++. ... -|...|+-+-..+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999873 455677787777766665 4578888888876 233 4778898766665554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHH---HhcCChhHHHHHHHHHHh
Q 003868 601 ------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY---ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 601 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 649 (790)
+.++++++.++++++++|++...+..++... ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999865554443322 245777888888888875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.8e-05 Score=79.72 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccC---CCCCC-ChhH
Q 003868 487 WNAMIAALGQHGNGARAIELYEQMLKE-GILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGP---YGIPP-GEDH 557 (790)
Q Consensus 487 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 557 (790)
+..+...|...|++++|.+.+.++... +..++.. ..+.+-..+...|..+++..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455677777777777777777766542 1112221 1222222334567777777777665321 12222 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCC----Cc
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLM---PHH----AG 622 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 622 (790)
+..+...|...|++++|.+++++. ..++. ..++..++..|...|++++|...+++++... +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888887754 11222 3467788888889999999999998887653 222 24
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777888888999999888777643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=7.1e-05 Score=64.02 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI 599 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 599 (790)
+..+...+...|++++|...|+.+.+. .+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555666777777777777776652 2335666777777777777888777777765 3334 56678888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC
Q 003868 600 HGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 600 ~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888763
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.5e-05 Score=68.08 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CCc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH------HAG 622 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 622 (790)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555443 1011 1335666777777888888888888887765221 235
Q ss_pred chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 623 TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888889999999999988887754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-05 Score=67.59 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCC-CCChhHHHHHHHH
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGI-PPGEDHYARFIDL 564 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~ 564 (790)
.+......+.+.|++++|+..|++.++ +.|+...- +.... +.+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~------------------------~a~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE------------------------EAFDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT------------------------SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch------------------------hhhhhccchHHHHHHHHHH
Confidence 455566667777777788877777777 45542100 00000 0012255566666
Q ss_pred HHhcCChHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhH
Q 003868 565 LCRAGKFSEAKDVIDSL--------PFKPSA-PIW----EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLS 628 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 628 (790)
+.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|++++++.|++...+..+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 66666666666555543 337754 578 89999999999999999999999999999988776663
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=62.57 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHccCCHHHHHHHHHHcccCCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003868 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGE---DHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS----APIWEALLAGC 597 (790)
Q Consensus 526 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 597 (790)
...+...|++++|...|+.+.+. .+.+. ..+..+...+.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 33444555555555555555432 11111 34555556666666666666666554 11222 45566777778
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
...|++++|...++++++..|+++....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888888888888888888887754433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.7e-05 Score=78.68 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..|..+...+.+.|++++|+..|++..+ ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4466677778888999999999999887 4565442 233444444443321 1367788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHH-HhcCChhHHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMY-ANLGRWDDAA 641 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 641 (790)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888875 3334 6778888999999999999999999999999999988888888874 4556778888
Q ss_pred HHHHHHHhC
Q 003868 642 RVRKLMRDR 650 (790)
Q Consensus 642 ~~~~~m~~~ 650 (790)
+++++|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888888654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=9.8e-05 Score=66.35 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC-Chh
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGIL-PDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP-GED 556 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 556 (790)
++..+...+...|++++|+..+++..+..-. ++. .++..+...+...|++++|..+++...+.. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666655442100 111 245555566666666666666666554311 1111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL-------PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777777777777776654 1111 13456777788888999999999999888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00043 Score=76.63 Aligned_cols=168 Identities=10% Similarity=-0.003 Sum_probs=128.9
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccC
Q 003868 468 VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGN----------GARAIELYEQMLKEGILPDR-ITFLTVLSACNHAG 533 (790)
Q Consensus 468 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 533 (790)
..++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34566666666543 355667766666666666 8889999999888 45654 46777777777888
Q ss_pred --CHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--------
Q 003868 534 --LVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG-KFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH-------- 600 (790)
Q Consensus 534 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 600 (790)
+++++.++++++.+. .+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999988863 3456777887777888888 888999998887 4444 677888887777663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 601 ------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 601 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
+.++++++.+++++..+|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.4e-05 Score=77.72 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=103.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++ .+ ..+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHH
Confidence 346777888888899999999998887762 11110 00011111 10 01123567888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHH
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAA 641 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 641 (790)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 4455 56788999999999999999999999999999999999999999999988888776
Q ss_pred H
Q 003868 642 R 642 (790)
Q Consensus 642 ~ 642 (790)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=65.95 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHcccCCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYG--IPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGI 607 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 607 (790)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777766642 1 1223456677777788888888888877765 2233 5667888888888999999999
Q ss_pred HHHHHHHhcCCCCCcch
Q 003868 608 QAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 608 ~~~~~~~~~~p~~~~~~ 624 (790)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999988886543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00019 Score=61.86 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFI 562 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 562 (790)
.++..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|++.|+...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4556666666677777777777776666 34543 34555566666666666666666655431 111 0001000
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 619 (790)
..+|..+...+...|++++|++.++++++..|+
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666677777777777777777776664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=59.65 Aligned_cols=65 Identities=26% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 585 PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999999999999998865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.8e-05 Score=79.40 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=88.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 003868 521 TFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIH 600 (790)
Q Consensus 521 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 600 (790)
.+..+...+...|++++|...|+...+. .|+... +...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3455666778889999999999987742 343221 233444555544432 13788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|++++|+..++++++++|++..+|..++.+|...|++++|.+.+++..+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.4e-05 Score=67.38 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=83.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEG------ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDH 557 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 557 (790)
...|......+.+.|++++|+..|++.++.- -.|+...+ ..+ .+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 4456667777777888888888887776520 01111100 000 1123456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC-cchHhhHHH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA-GTYVLLSNM 630 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 630 (790)
|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 777888888888888888888775 3334 577888999999999999999999999999999987 444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=76.16 Aligned_cols=159 Identities=10% Similarity=-0.008 Sum_probs=117.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR----------------ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG 554 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 554 (790)
...+.+.|++++|++.|.+..+..-.... ..+..+...|...|++++|.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567789999999999998874221111 13677889999999999999999988653222222
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----
Q 003868 555 E----DHYARFIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLM----- 617 (790)
Q Consensus 555 ~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 617 (790)
. ...+.+...+...|++++|.+++++. +..+. ..++..|...+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334444555678999998887754 22333 4578889999999999999999999987651
Q ss_pred -CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 618 -PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 618 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|....+|..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22245888999999999999999999988753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=77.91 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=83.9
Q ss_pred HccCCHHHHHHHHHHcccC----CC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHH
Q 003868 530 NHAGLVKEGRRYFETMHGP----YG-IPP-GEDHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEAL 593 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~----~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l 593 (790)
...|++++|..++++..+. +| ..| ...+++.|..+|...|++++|+.++++. +..|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555443221 11 111 2356667777777777777777766554 234543 468889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc-----CCCCCc---chHhhHHHHHhcCChhHHHHHHHHHHhCC
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQL-----MPHHAG---TYVLLSNMYANLGRWDDAARVRKLMRDRG 651 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 651 (790)
...|..+|++++|+.++++++++ .|+++. ....|..++.+.|++++|..++.++++.-
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 677654 45678888999999999999999998643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=9e-05 Score=61.88 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------CcchH
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------AGTYV 625 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 625 (790)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999888875 2233 67788999999999999999999999999999998 67788
Q ss_pred hhHHHHHhcCChhHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKL 646 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~ 646 (790)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=56.47 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 555 EDHYARFIDLLCRAGKFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
...+..+...+.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888765 222 356778888888889999999999999999999998888888888876
Q ss_pred hcC
Q 003868 633 NLG 635 (790)
Q Consensus 633 ~~g 635 (790)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00057 Score=73.82 Aligned_cols=64 Identities=5% Similarity=-0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=60.59 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 573 EAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 573 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555543 3334 6778889999999999999999999999999999999999999999999999999999998865
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00028 Score=73.72 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-SAPIWEALLAGCR 598 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 598 (790)
..+..+...+...|++++|...|+++.+. .+.. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777776665531 0000 0000111111 0223 4567889999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=4.9e-05 Score=67.12 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc
Q 003868 567 RAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGN----------IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL 634 (790)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 634 (790)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666665554 2233 45556656555555544 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHh
Q 003868 635 G-----------RWDDAARVRKLMRD 649 (790)
Q Consensus 635 g-----------~~~~a~~~~~~m~~ 649 (790)
| ++++|.+.|++..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH
Confidence 5 89999999999976
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00071 Score=54.27 Aligned_cols=69 Identities=20% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCC
Q 003868 584 KPSAPIWEALLAGCRIHGN---IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++..|..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577788888888866655 69999999999999999999999999999999999999999999987544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00087 Score=72.27 Aligned_cols=115 Identities=9% Similarity=-0.045 Sum_probs=87.9
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cchH
Q 003868 564 LLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GTYV 625 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 625 (790)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. .|+++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888764 223433 47899999999999999999999998864 45554 5788
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 003868 626 LLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMRK 696 (790)
Q Consensus 626 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 696 (790)
.|+.+|...|++++|..++++..+--.. . . ...||...++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998652111 0 1 13599999888877777665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=57.83 Aligned_cols=90 Identities=8% Similarity=-0.126 Sum_probs=52.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh---
Q 003868 561 FIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN--- 633 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 633 (790)
|...|...+..++|.+.|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444455554443222344555555555555 56666677777666655 455666777777776
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 003868 634 -LGRWDDAARVRKLMRDRGV 652 (790)
Q Consensus 634 -~g~~~~a~~~~~~m~~~g~ 652 (790)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777766554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00081 Score=55.85 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=70.44 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=83.7
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cc
Q 003868 562 IDLLCRAGKFSEAKDVIDSL------PFKP---S-APIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GT 623 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 623 (790)
+..+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+.+++++++. .|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777776543 0122 2 246888888899999999999999988764 34443 57
Q ss_pred hHhhHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARVRKLMRDRGVKKEPGCSWIEVDNKVHVFLVDDTAHPEAQAVYKYLEQLVLEMR 695 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 695 (790)
++.|+.+|...|++++|..++++..+--. .. . ...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------H-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------c-CCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998865211 10 1 1359999999999988888775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00034 Score=61.77 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 572 SEAKDVIDSL-PFKP-SAPIWEALLAGCRIH-----------GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++......+ ...+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHH
Confidence 3555555554 3334 344566666666555 589999999999999999984222221 1235
Q ss_pred HHHHHHHHHHhCC
Q 003868 639 DAARVRKLMRDRG 651 (790)
Q Consensus 639 ~a~~~~~~m~~~g 651 (790)
+|.+++-.....+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0051 Score=67.97 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCC----------HHHHHHHHHHcccCCCCCCChhHHHHHHHHH
Q 003868 497 HGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHAGL----------VKEGRRYFETMHGPYGIPPGEDHYARFIDLL 565 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 565 (790)
....++|++.++++.+ +.|+.. .|+.--.++.+.|+ ++++.+.++.+.+ ..+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3446788999999999 678875 45555555556666 9999999999987 3455677888888889
Q ss_pred HhcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhc------
Q 003868 566 CRAG--KFSEAKDVIDSL-PFK-PSAPIWEALLAGCRIHG-NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANL------ 634 (790)
Q Consensus 566 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 634 (790)
.+.| ++++|+++++++ ... .+..+|+.-.......| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999987 333 47889999888888888 899999999999999999999999999998874
Q ss_pred --------CChhHHHHHHHHHHh
Q 003868 635 --------GRWDDAARVRKLMRD 649 (790)
Q Consensus 635 --------g~~~~a~~~~~~m~~ 649 (790)
++++++.+++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 567888888887765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=51.72 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457888889999999999999999999999999999999999999999999999999999876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0022 Score=53.75 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=54.5
Q ss_pred HHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 538 GRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 538 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
|...|+...+ ..+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555553 22334566667777777777777777777664 2223 456777888888888888888888888888
Q ss_pred cCCCC
Q 003868 616 LMPHH 620 (790)
Q Consensus 616 ~~p~~ 620 (790)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 76643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=51.31 Aligned_cols=112 Identities=10% Similarity=-0.091 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHH
Q 003868 498 GNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSE 573 (790)
Q Consensus 498 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 573 (790)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999877 33333 666677778889999999998764 356778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q 003868 574 AKDVIDSLPFKPSAPIWEALLAGCRI----HGNIDLGIQAAEQLFQLMP 618 (790)
Q Consensus 574 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 618 (790)
|.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987434678888888888888 8999999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0019 Score=68.46 Aligned_cols=82 Identities=9% Similarity=0.048 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCC---cchHhhHH
Q 003868 568 AGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHHA---GTYVLLSN 629 (790)
Q Consensus 568 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 629 (790)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. .|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665543 123333 46888888899999999999999888764 44444 57889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003868 630 MYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 630 ~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0049 Score=49.82 Aligned_cols=52 Identities=29% Similarity=0.463 Sum_probs=26.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCc-chHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 597 CRIHGNIDLGIQAAEQLFQLMPHHAG-TYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 597 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544 55555555555555555555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.011 Score=47.63 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-PFKP-SAP-IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888775 2334 556 88888889999999999999999999999998776632 444
Q ss_pred hHHHHHHHHH
Q 003868 638 DDAARVRKLM 647 (790)
Q Consensus 638 ~~a~~~~~~m 647 (790)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.053 Score=55.01 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++.+|.++.-.+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555555555555666666666666666654 234555666666666666666666665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0063 Score=49.48 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=41.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHccc
Q 003868 483 DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHG 547 (790)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 547 (790)
+...|..+...|...|++++|+..|++..+ ..|+. ..|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777777777766 34443 4566666677777777777777766543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=50.46 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcC-C-CCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLM-P-HHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..+...+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 357777777777777776 6668888888888887 6 4567788888888999999999999888865
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.022 Score=60.25 Aligned_cols=97 Identities=9% Similarity=-0.085 Sum_probs=61.6
Q ss_pred HHccCCHHHHHHHHHHcccCC--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPY--GIPP----GEDHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEA 592 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 592 (790)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666655554321 1112 1345666667777777777777666644 234443 46888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-----CCCCCcchH
Q 003868 593 LLAGCRIHGNIDLGIQAAEQLFQL-----MPHHAGTYV 625 (790)
Q Consensus 593 ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 625 (790)
|...|..+|++++|+.++++++++ .|+++.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 889999999999999999998764 677765443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.027 Score=54.63 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=71.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCCC-CcchHhhHHHHHhc-CChhH
Q 003868 571 FSEAKDVIDSL-PFKPS---APIWEALLAGCRI-----HGNIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANL-GRWDD 639 (790)
Q Consensus 571 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 639 (790)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666654 45666 4578888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003868 640 AARVRKLMRDRGVKKEPG 657 (790)
Q Consensus 640 a~~~~~~m~~~g~~~~~~ 657 (790)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866654454
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0074 Score=63.88 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCC
Q 003868 556 DHYARFIDLLCRAGKFSEAKDVIDSL---------PFKPSA-PIWEALLAGCRIHGNIDLGIQAAEQLFQL-----MPHH 620 (790)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 620 (790)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|..+|++++|+.++++++++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666666666666666666666544 234544 46888888999999999999999988764 5666
Q ss_pred Ccc
Q 003868 621 AGT 623 (790)
Q Consensus 621 ~~~ 623 (790)
+.+
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.041 Score=55.78 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=105.2
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHc---cC-----CHH
Q 003868 471 AANCVFNTMPNVDSVSWNAMIAALG--QHGN---GARAIELYEQMLKEGILPDRI-TFLTVLSACNH---AG-----LVK 536 (790)
Q Consensus 471 ~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g-----~~~ 536 (790)
++.......+ .+...|...+.+.. ..+. ..+|..+|++.++ ..|+.. .+..+..++.. .+ ...
T Consensus 182 e~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 182 MQETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 3444444433 47788888877654 3333 4789999999999 688864 55555555431 11 111
Q ss_pred HHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 537 EGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 537 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.....+.........+.+...|..+...+...|++++|...++++ .+.|+...|..+...+...|+.++|.+.+++++.
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111222222111134667788888888888889999999999987 4568888888888888999999999999999999
Q ss_pred cCCCCCcchHhhH
Q 003868 616 LMPHHAGTYVLLS 628 (790)
Q Consensus 616 ~~p~~~~~~~~l~ 628 (790)
++|..+ +|...-
T Consensus 339 L~P~~~-t~~~~~ 350 (372)
T 3ly7_A 339 LRPGAN-TLYWIE 350 (372)
T ss_dssp HSCSHH-HHHHHH
T ss_pred cCCCcC-hHHHHh
Confidence 999874 555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00076 Score=69.51 Aligned_cols=419 Identities=12% Similarity=0.096 Sum_probs=219.0
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 003868 80 DIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSAL 159 (790)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 159 (790)
.+.+|+.|-.++...|.+.+|..-|-+. .|+..|.-+|.+..+.|.+++-+..+...++..- ++..=+.|+-++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 4457888999999888888887766433 5667788899999999999998888877766533 334445777788
Q ss_pred hcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCCC----------------
Q 003868 160 ALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPE---------------- 222 (790)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~~---------------- 222 (790)
++.++ .+-. ... -.|+..-...+-+-+... |.++.|.-+|..+..
T Consensus 127 Ak~~rL~elE--efl-------~~~N~A~iq~VGDrcf~e---------~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELE--EFI-------NGPNNAHIQQVGDRCYDE---------KMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTT--STT-------SCCSSSCTHHHHHHHHHS---------CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHH--HHH-------cCCCcccHHHHHHHHHHc---------cCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 87766 3222 110 123333233333333333 555555555554431
Q ss_pred --------CCeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHc
Q 003868 223 --------RDELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACAN 294 (790)
Q Consensus 223 --------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 294 (790)
.++.+|-.+-.+|+..+.+.-|.-.-- .+-.....+..++..|-.
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGL---------------------------niIvhadeL~elv~~YE~ 241 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL---------------------------HIVVHADELEELINYYQD 241 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHH---------------------------HHHCCSSCCSGGGSSSST
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcc---------------------------hhcccHHHHHHHHHHHHh
Confidence 245556666666666555544332221 111222234455666777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHH
Q 003868 295 SGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE----R-------DLVSWNAILSAYV 363 (790)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~ 363 (790)
.|.+++-..+++..+. -.....-+++-|.-.|+|-. .++-++.++..-. | ....|.-++-.|.
T Consensus 242 ~G~f~ELIsLlEaglg-----lErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 242 RGYFEELITMLEAALG-----LERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp TCCCTTSTTTHHHHTT-----STTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh
Confidence 7777777777766652 12335667777777777753 3444443333221 2 3446777777777
Q ss_pred HcCCHHHHHHHH-------------HHhcc--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003868 364 SAGLIDEAKSLF-------------EAMRE--RNLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSC 428 (790)
Q Consensus 364 ~~g~~~~A~~~~-------------~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 428 (790)
+..+++.|.... .++.. .|+..|..-|+-|.+.. +..--+++.-+.. .+.++ .+++.+
T Consensus 316 ~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~ 388 (624)
T 3lvg_A 316 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYF 388 (624)
T ss_dssp HHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHH
T ss_pred cchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHH
Confidence 777777664321 11111 24444554455444432 1111112111110 11111 122223
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH------------HH-HHHHHHH
Q 003868 429 AGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS------------WN-AMIAALG 495 (790)
Q Consensus 429 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~------------~~-~li~~~~ 495 (790)
.+.|++...+.++.... -..+..+-.++-+.|....+++.-+...+.-..-|... +. .-...|.
T Consensus 389 ~k~~~LpLIkpYL~~Vq---~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYk 465 (624)
T 3lvg_A 389 SKVKQLPLVKPYLRSVQ---NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFK 465 (624)
T ss_dssp HTTTCGGGGTGGGTSCC---CSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HhcCCchhhHHHHHHHH---HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 33333333322222111 12345566778888888888776666555444333222 22 2233456
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHH
Q 003868 496 QHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAK 575 (790)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 575 (790)
+++++++++.+.++ ..-|.-.+...+.+|+.+-+.++++-..+. | +.+.|.+.+-.+...=++|.++
T Consensus 466 kn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVl 532 (624)
T 3lvg_A 466 GNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVL 532 (624)
T ss_dssp TTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHH
T ss_pred hcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHhhccChHHHH
Confidence 67777777665432 112222334455666666666666665542 2 2344444444444444566666
Q ss_pred HHH
Q 003868 576 DVI 578 (790)
Q Consensus 576 ~~~ 578 (790)
++-
T Consensus 533 Ela 535 (624)
T 3lvg_A 533 ETA 535 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.26 Score=41.12 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=96.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEA 574 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 574 (790)
.-.|..++..++..+.... .+..-|+-++--...+-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467777778887777653 23334444444444444445555556555443222 245666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 575 KDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
..-+-.++ .+....+.-+.....+|+-+.-.+++..++...|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665554 233345566778889999999999999987778888999999999999999999999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.12 Score=60.24 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=59.4
Q ss_pred HhcCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 003868 464 ARCGVVEAANC-VFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYF 542 (790)
Q Consensus 464 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 542 (790)
...+++++|.+ ++..++. ......++..+.+.|..++|+++.+.-. .-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 34567777776 5544431 1222556666677777777776553111 1122334567777777775
Q ss_pred HHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 543 ETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
+.+ .+...|..+.+.+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 543 245677778888888888888888777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0018 Score=66.76 Aligned_cols=400 Identities=12% Similarity=0.075 Sum_probs=205.7
Q ss_pred chhHHHHHHhhcCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHhhhCCCCChHHHHHHHHHH
Q 003868 12 LANRYASQLQLCDPRNPITSSLARSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIPQPDIVARTTLIAAY 91 (790)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 91 (790)
+++.|..++.++.+.+. .+.....+..-.+. ..++..=+.|+-+|++.+++.+-++++.. ||..--..+-.-|
T Consensus 82 Dps~y~eVi~~A~~~~~--~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGN--WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSC--CTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCC--HHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHH
Confidence 45667778888887777 67666655544443 33444556788888888887653333222 5555555666777
Q ss_pred hcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHHHhcchh-hhhh--
Q 003868 92 SASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSALALIVE-EEKQ-- 168 (790)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~-- 168 (790)
...|.++.|+-+|..++. |.-|...+++.|++..|.+.-+.. -+..||-.+-.+|...++ ..+.
T Consensus 155 f~e~lYeAAKilys~isN-------~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHSCCSTTSSTTGGGSCC-------CTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHccCHHHHHHHHHhCcc-------HHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHh
Confidence 777777777777776654 333333334444444433322211 133445555545544443 2222
Q ss_pred -----------------------hh---hHHHHHHHhCC-CCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHc-cC
Q 003868 169 -----------------------CM---QMHCTVVKSGT-GLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFD-EM 220 (790)
Q Consensus 169 -----------------------~~---~~~~~~~~~g~-~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~-~~ 220 (790)
+. .+.+... |+ .....+++-|--.|+|-.+ ..+-+=.++|. ++
T Consensus 222 GLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~P-------eKlmEHlklf~sri 292 (624)
T 3lvg_A 222 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKP-------QKMREHLELFWSRV 292 (624)
T ss_dssp HHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSCT-------THHHHHHTTSSSSS
T ss_pred cchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhc
Confidence 00 2221111 22 2445566777777777411 22222222222 22
Q ss_pred CCC-------CeeeHHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHH-hCccCChhhHHHHHHHH
Q 003868 221 PER-------DELSWTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLM-LRIQLDEFTYTSVISAC 292 (790)
Q Consensus 221 ~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~-~~~~p~~~t~~~ll~~~ 292 (790)
.-| ....|..++-.|.+-.+++.|... |.+....+|..-.- .+ ..-.+|...|-..|+.|
T Consensus 293 NipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~F---------kdii~KVaN~EiyYKAi~FY 360 (624)
T 3lvg_A 293 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQF---------KDIITKVANVELYYRAIQFY 360 (624)
T ss_dssp CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGG---------TTTGGGCSCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHH---------HHHHHHcchHHHHHHHHHHH
Confidence 222 455677777777777777766543 22221111110000 00 01124555566666666
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHH-HHHHHHHHcCCHHHH
Q 003868 293 ANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWN-AILSAYVSAGLIDEA 371 (790)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A 371 (790)
.... +..-..++.-+. +.++.+ ..++++.|.|++......+......|...-| ++-..|....+++.-
T Consensus 361 L~e~-P~lL~DLL~vL~-----prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 361 LEFK-PLLLNDLLMVLS-----PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp TTSC-CTTSHHHHHHHC-----TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhC-hHHHHHHHHhcc-----ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 5432 111222222221 222221 3456677777777777777777766555444 555677777776654
Q ss_pred HHH------------HHHhccCChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003868 372 KSL------------FEAMRERNLLSWTVM-ISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGR 438 (790)
Q Consensus 372 ~~~------------~~~m~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 438 (790)
... -.++.+....-+..+ ...|.+++++++++.+.++ .+ .|.-.|...+.+|+.+-+.
T Consensus 430 R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elae 500 (624)
T 3lvg_A 430 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAE 500 (624)
T ss_dssp HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHH
T ss_pred HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHH
Confidence 332 223333344334333 4567778888888776431 11 2333445567788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003868 439 QLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCV 475 (790)
Q Consensus 439 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 475 (790)
++++..++.|- ...+.+.+-.+...=++|.+.++
T Consensus 501 eLL~yFv~~g~---~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 501 ELLQWFLQEEK---RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHCS---THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHcCc---hHHHHHHHHHHhhccChHHHHHH
Confidence 88888888763 22333333333333344444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.37 Score=55.87 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 540 (790)
.....+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556777777777776653 456777778888888888888877776643 3334444444555554444
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL 581 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 581 (790)
+-+..... | .++.-..+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43333321 1 1233333455556666665555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.074 Score=43.34 Aligned_cols=74 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 554 GEDHYARFIDLLCRAGKFSEAKDVIDSL-----P----FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
+..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556667777777777777766653 1 123456888999999999999999999999999999996664
Q ss_pred Hhh
Q 003868 625 VLL 627 (790)
Q Consensus 625 ~~l 627 (790)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.14 Score=40.61 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=58.9
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHh
Q 003868 552 PPGEDHYARFIDLLCRAGK---FSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVL 626 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 626 (790)
+++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4567778888888765554 68999998876 3445 5667888888899999999999999999999998 444444
Q ss_pred hHH
Q 003868 627 LSN 629 (790)
Q Consensus 627 l~~ 629 (790)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.51 Score=42.09 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=75.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 003868 461 TMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 461 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 540 (790)
+...++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 3566777777777777777777777776543 3444455555666665555
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44433322 1 13444445556777777777777765333221 1123356666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.15 Score=44.32 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 553 PGEDHYARFIDLLCRAG---KFSEAKDVIDSL-PFK-P--SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
++..+.-.+..++.+.+ +++++..++++. ... | ....+-.|.-+|.+.|++++|.+.++++++.+|+|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45555555555666655 444566555544 112 3 23456677778899999999999999999999998443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.3 Score=39.59 Aligned_cols=64 Identities=16% Similarity=-0.007 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM-------PHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+..-+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556788899999999999999999998763 23456789999999999999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.24 Score=41.39 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcC-C-CCCcchHhhHHHHHhcCChhHHHHHHHHHH
Q 003868 606 GIQAAEQLFQLM-P-HHAGTYVLLSNMYANLGRWDDAARVRKLMR 648 (790)
Q Consensus 606 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 648 (790)
++.+++.++... | ..-.....|+-++.+.|++++|.++.+.+.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444433 2 122334444455555555555555555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=14 Score=40.71 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=144.1
Q ss_pred CCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhcc---CChhHHHHHHHHHH
Q 003868 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNLLSWTVMISGLA 394 (790)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 394 (790)
+.....-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-- ......+.
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~------ 141 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDK------ 141 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHH------
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHH------
Confidence 33344555666777888888888887776 434555555667778888887666665554422 12233333
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSS-LSAGNALITMYARCGVVEAAN 473 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~ 473 (790)
+|....+.|...+...+.- +......|+...|..+...+ +++ ......++..+.+-..+ .
T Consensus 142 ----------l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~ 202 (618)
T 1qsa_A 142 ----------LFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---L 202 (618)
T ss_dssp ----------HHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---H
T ss_pred ----------HHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---H
Confidence 4444443332222222222 22334455566665554432 222 22334444444433333 3
Q ss_pred HHHhcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHccCCHHHHHHHHHHcc
Q 003868 474 CVFNTMPNVDSV---SWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITF----LTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 474 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
....... ++.. .+..-+.-+++. +.+.|..+|....+.+ ..+.... ..+.......+...++...+....
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 203 TFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred HHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 3333222 2221 122223333443 7899999999887643 2233222 222223334453556666666644
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 547 GPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKP-S-APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 547 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
.. .++.....-.+....+.|+++.|...|+.|+..+ + ..-.--+..+....|+.++|..+++++.+
T Consensus 280 ~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 280 MR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32 2343334444555567899999999999996443 2 33233455677788999999999999875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=1.4 Score=37.43 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCC-CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLMPHH-AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..+--.+..++.+.. +..+++.+++.++...|.+ -.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456665555666665554 4457788888888777743 35566788888888888888888888865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.66 E-value=5.2 Score=35.58 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=87.6
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 003868 427 SCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIEL 506 (790)
Q Consensus 427 ~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 506 (790)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|....+-+ .+.-.|.-.|+.++-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-----KLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-----HHHHHHHHhCCHHHHHHH
Confidence 345678888888887665 457789999999999999999999999887533 333345556777666655
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 003868 507 YEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP 582 (790)
Q Consensus 507 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 582 (790)
-+.....| -++....++...|+++++.++|.+..+ -|.. +-.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 55554443 245555667778999999999977543 1211 111223566777888888775
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.52 Score=52.95 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHH
Q 003868 594 LAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLM 647 (790)
Q Consensus 594 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 647 (790)
...|...|+++.|+++++++...-|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455778899999999999999999999999999999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.21 Score=48.44 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCC
Q 003868 557 HYARFIDLLCR-----AGKFSEAKDVIDSL-PFKP--SAPIWEALLAGCRI-HGNIDLGIQAAEQLFQLMPH 619 (790)
Q Consensus 557 ~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 619 (790)
.|..|...|.+ -|+.++|.+.|++. .+.| +..++..+...++. .|+.+++.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44444444444 25555555555553 2333 24444555555544 36666666666666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.19 E-value=6 Score=33.17 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 387 TVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
+.-++.+...|.-++-.+++.++.. +.+|+...+..+..||.+.|+..++.+++.++-+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455555556666666666433 3466666777777777777777777777777776664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.99 E-value=1.8 Score=36.14 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 624 (790)
.-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 44566778899999999999999999999985443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=31 Score=37.83 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=60.9
Q ss_pred ChhHHHHHhhhCCC-CC-hHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 003868 65 KLVYARTLFDEIPQ-PD-IVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRR 142 (790)
Q Consensus 65 ~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 142 (790)
...+....+++.+. |- ...-+.-+..+.+.+++.....++.. +. .+...-.....+....|+..+|......+-.
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p--~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~ 130 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Confidence 55666666666554 21 23345567777888899988887776 32 4555555677788888998888888888877
Q ss_pred CCCCCChhhHHHHHHHHhc
Q 003868 143 DDVKPDNFTFTSVLSALAL 161 (790)
Q Consensus 143 ~g~~p~~~t~~~ll~~~~~ 161 (790)
.|- .....+..++..+..
T Consensus 131 ~~~-~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 131 TGK-SQPNACDKLFSVWRA 148 (618)
T ss_dssp CSS-CCCTHHHHHHHHHHH
T ss_pred CCC-CCcHHHHHHHHHHHH
Confidence 662 234455556655553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.32 E-value=6.1 Score=33.88 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCCHHHHHHHHHHcccCCC
Q 003868 481 NVDSVSWNAMIAALGQHGNG------ARAIELYEQMLKEGILPDRI----TFLTVLSACNHAGLVKEGRRYFETMHGPYG 550 (790)
Q Consensus 481 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 550 (790)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 35778888888888777888 7778888877764 566531 1111111111
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 551 IPPGEDHYARFIDLLCRAGKFSEAKDVIDSLP--FKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 551 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
. +...++.++|.++|+.+- .+.=..+|.....--.++|+++.|.+++.+++.+.|...
T Consensus 69 ---------~----~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 ---------E----LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp ---------H----HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred ---------H----HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 0 011133444444443330 011155677777767778888888888888888877653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.55 E-value=1.8 Score=37.16 Aligned_cols=56 Identities=9% Similarity=-0.033 Sum_probs=44.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003868 599 IHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVKK 654 (790)
Q Consensus 599 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 654 (790)
..+|.++|.++|+.++.+...-+..+...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 33899999999999988844445566666777778999999999999998866543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.22 E-value=1.9 Score=36.06 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCC-CCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 584 KPSAPIWEALLAGCRIHG---NIDLGIQAAEQLFQLMPH-HAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 584 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.|+..+--.+..++.+.. +..+|+.+++.++...|. .-..+..|+-++.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555444555555443 334677777777766663 245566777777777777777777777754
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.68 E-value=26 Score=34.53 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLK----LFSQMRLEGFKPCDYAFAGAITSCAG 430 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~~ 430 (790)
|.++..-|.+++++++|.+++..- ...+.+.|+...|-+ +.+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 444556666677777776665432 223344454544443 45555667888888888888777765
Q ss_pred cCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CCh
Q 003868 431 LGALE-NGRQLHAQLV----HSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQH---GNG 500 (790)
Q Consensus 431 ~g~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 500 (790)
...-+ .-.++...++ +.| -.-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43221 1233333443 232 2246778889999999999999999888643323455555554444433 443
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 501 ARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 501 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
.++--.+-+ + +--|.-.|++..|..+|+...
T Consensus 185 ~e~dlf~~R--------------a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEFFSR--------------L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHHHHH--------------H-HHHHHHhcCHHHHHHHHHHHH
Confidence 332221111 1 123445678888888777654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.64 E-value=27 Score=34.69 Aligned_cols=126 Identities=8% Similarity=-0.046 Sum_probs=71.7
Q ss_pred HHhCccCChhhHHHHHHHHHccCChH-HHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFR-LGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 350 (790)
.+.++++|..+...++..+.....-+ .-..+...+++.....| ..-|+.....+...|.+.+++.+|+..|-.-.++
T Consensus 86 ~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~ 165 (336)
T 3lpz_A 86 RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE 165 (336)
T ss_dssp HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 45678888888888887776555321 12334444443322122 3446777788888999999999999888532333
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
.+..+..++.-+...+...++-- .....+-.|.-.++...|..+|+...
T Consensus 166 s~~~~a~mL~ew~~~~~~~e~dl-----------fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 166 SPEVLARMEYEWYKQDESHTAPL-----------YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCccHHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566666655555443221111 11222334555566777766665544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.37 E-value=28 Score=34.59 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003868 355 WNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGL----KLFSQMRLEGFKPCDYAFAGAITSCAG 430 (790)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~g~~p~~~t~~~ll~~~~~ 430 (790)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|- -+++-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555666677777776664432 22333444444433 334555667788888888777777766
Q ss_pred cCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 003868 431 LGALE-NGRQLHAQLV----HSG--YDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARA 503 (790)
Q Consensus 431 ~g~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 503 (790)
...-+ .=..+...++ +.| -.-+......+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55422 1122333333 333 3346778888999999999999999988543333345665554443333322211
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 504 IELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 504 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
|...-.++ --|...+++..|...|+...
T Consensus 187 --------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------------PLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 11111222 23455667777777655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.13 E-value=17 Score=38.24 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCC----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhcc-----C-C----h
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPE----R-----DLVSWNAILSAYVSAGLIDEAKSLFEAMRE-----R-N----L 383 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~-~----~ 383 (790)
+...|...|...|++.+|.+++..+.. . -+..+...+..|...+++.+|..+++++.. . + .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 446788999999999999999988752 1 134566778889999999999999888742 1 1 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHH----HHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLE-GFKPCDYAFAGAI----TSCAGLGALENGRQLHAQLVHSGYDSSLSAGNA 458 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll----~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 458 (790)
..|...+..+...+++.+|-..|.+.... ...-|...+..++ ....-.+.-..-..+.....+...-++...+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 35677788888899999999888877542 1112222222111 111111111112222233333333456778888
Q ss_pred HHHHHHhc--CCHHHHHHHHhcCCC
Q 003868 459 LITMYARC--GVVEAANCVFNTMPN 481 (790)
Q Consensus 459 li~~y~~~--g~~~~A~~~~~~~~~ 481 (790)
|+.+|... .+++...+.|.....
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHhchHhhhHHHHHHHHHHhc
Confidence 99998764 467888888876554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.14 E-value=1.5 Score=45.57 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD-----RGVKKEPG 657 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 657 (790)
...++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999988999999999999999999998888743 47776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.47 E-value=40 Score=33.20 Aligned_cols=126 Identities=10% Similarity=-0.015 Sum_probs=66.9
Q ss_pred HHhCccCChhhHHHHHHHHHccCChH-HHHHHHHHHHHhcCCCC--CCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCC
Q 003868 274 LMLRIQLDEFTYTSVISACANSGLFR-LGKQVHAYLLRTEAKPT--PEFSLPVNNALVTLYWKCGKVNEARDIFNQMPER 350 (790)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 350 (790)
.+.++++|..+...++..+.....-+ .-.++...+++.....+ ..-++.....+...|.+.|++.+|+..|-.-...
T Consensus 84 ~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~ 163 (312)
T 2wpv_A 84 DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD 163 (312)
T ss_dssp HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc
Confidence 44577788777777777665533111 12233333333221122 2336777888888888888888888877633323
Q ss_pred ChhHHHHHHHHHHHc---CCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSA---GLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEGLKLFSQMR 410 (790)
Q Consensus 351 ~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (790)
|...+..++.-+... |...++--++ ...+-.|.-.|+...|..+|+...
T Consensus 164 s~~~~a~~l~~w~~~~~~~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 164 SMIKYVDLLWDWLCQVDDIEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455565555554444 4433321111 112233444555666666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.26 E-value=22 Score=39.95 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=38.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHc
Q 003868 492 AALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETM 545 (790)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 545 (790)
.-+...|+++.|+++-++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567778888888877777 46665 57778888888888888887777766
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.56 E-value=62 Score=38.76 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=77.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------------------
Q 003868 423 GAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV-------------------- 482 (790)
Q Consensus 423 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------------- 482 (790)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556666666666655433 2334444455677888889999999998876420
Q ss_pred ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---h--hHHHHHHHHHccCCHHHHHHHHHHcccCCCC
Q 003868 483 ------DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR---I--TFLTVLSACNHAGLVKEGRRYFETMHGPYGI 551 (790)
Q Consensus 483 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 551 (790)
-..-|..++..|-++|.++.++++-+...+.. .++. . .|..+..++...|++++|...+-.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 01124555566666666666666655555431 1121 1 2455556666666666666655554321
Q ss_pred CCChhHHHHHHHHHHhcCChH
Q 003868 552 PPGEDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 552 ~p~~~~~~~li~~~~~~g~~~ 572 (790)
.-.......||..++..|.++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhCCChh
Confidence 122344555555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 790 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 4e-06
Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 10/191 (5%)
Query: 451 SSLSAGNALITMYARCGVVEAANCVFNTMPNVD---SVSWNAMIAALGQHGNGARAIELY 507
+ L A L + + + A + ++ +V + + G AI+ Y
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 508 EQMLKEGILPDRITFLTVL-SACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLC 566
+ ++ + P L +A G V E + T P D ++
Sbjct: 261 RRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKR 316
Query: 567 RAGKFSEAKDVID-SLPFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY 624
G EA + +L P A L + + G + + ++ ++ P A Y
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 625 VLLSNMYANLG 635
+ N +
Sbjct: 377 SNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 48/364 (13%), Positives = 116/364 (31%), Gaps = 25/364 (6%)
Query: 296 GLFRLGKQ----------VHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFN 345
G L + + +P + V L +++++C +++ +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 346 QMPERD---LVSWNAILSAY-VSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEE 401
+++ +++ + + Y L + + A+R + + A G+
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 402 GLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALIT 461
+ + + + P Y + + + + A + L
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 462 MYARCGVVEAANCVFNTMPNVDS---VSWNAMIAALGQHGNGARAIELYEQMLKEGILPD 518
++ G + A F +D ++ + L + RA+ Y + L
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 519 RITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVI 578
+ + GL+ + P D Y + L G +EA+D
Sbjct: 238 VV-HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 579 D-SLPFKPSAPIWEALLAGC-RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636
+ +L P+ LA R GNI+ ++ + ++ P A + L+++ G+
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 637 WDDA 640
+A
Sbjct: 355 LQEA 358
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 0.002
Identities = 23/210 (10%), Positives = 63/210 (30%), Gaps = 16/210 (7%)
Query: 318 EFSLPVNNALVTLYWKCGKVNEARDIFNQ----MPERDLVSWNAILSAYVSAGLIDEAKS 373
E S + + +EA +I+ + + +++++ + A S ++ S
Sbjct: 61 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120
Query: 374 LFEAMRERN----LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCA 429
++ + L + + + + G +F + R + A+
Sbjct: 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180
Query: 430 GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVS--- 486
++ +L Y A I + +F + S+
Sbjct: 181 CSKDKSVAFKIF-ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239
Query: 487 ----WNAMIAALGQHGNGARAIELYEQMLK 512
W +A G+ A +++ ++
Sbjct: 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 790 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.18 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.96 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.84 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.6 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.69 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.23 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.49 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.9e-19 Score=187.36 Aligned_cols=371 Identities=13% Similarity=0.121 Sum_probs=298.3
Q ss_pred HHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccC-ChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 003868 231 MMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQL-DEFTYTSVISACANSGLFRLGKQVHAYLL 309 (790)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (790)
+...+.+.|++++|.+.|+++ .. ..| +...+..+...+...|++++|...+..++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~----------------------l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 60 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQL----------------------WR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----------------------HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----------------------HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677889999999999987 22 235 45667778888899999999999999998
Q ss_pred HhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhcc---CCh
Q 003868 310 RTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE---RDLVSWNAILSAYVSAGLIDEAKSLFEAMRE---RNL 383 (790)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~ 383 (790)
+ ..+ .+..++..+..+|.+.|++++|...+....+ .+...+..........+....+......... ...
T Consensus 61 ~----~~p-~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (388)
T d1w3ba_ 61 K----QNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp H----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred H----hCC-CCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7 443 3577889999999999999999999988764 3344444555555555655555555444433 344
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003868 384 LSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMY 463 (790)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 463 (790)
..+..........+....+...+.+..... +-+...+..+...+...|+++.|...+..+++.. +.+...+..+...|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 213 (388)
T d1w3ba_ 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhh
Confidence 566666777778888888888888877653 3456677777888889999999999999988864 44667888899999
Q ss_pred HhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHH
Q 003868 464 ARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGR 539 (790)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 539 (790)
...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+ +.|+. .++..+..++...|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~ 291 (388)
T d1w3ba_ 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred hccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987653 5677888899999999999999999999988 56765 57888888999999999999
Q ss_pred HHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 540 RYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+.++.... ..+.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++
T Consensus 292 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 292 DCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998876 45667788889999999999999999999885 5556 46788899999999999999999999999999
Q ss_pred CCCCcchHhhHHHHHhcCC
Q 003868 618 PHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 618 p~~~~~~~~l~~~~~~~g~ 636 (790)
|+++.+|..|+.+|.+.|+
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.1e-18 Score=180.34 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=288.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHc
Q 003868 289 ISACANSGLFRLGKQVHAYLLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPE--R-DLVSWNAILSAYVSA 365 (790)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 365 (790)
...+.+.|++++|.+.+..+++ ..+ .+..++..+..+|.+.|++++|...|++..+ | +..+|..+...|.+.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~----~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWR----QEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence 3456678999999999999987 432 3678889999999999999999999998764 3 567899999999999
Q ss_pred CCHHHHHHHHHHhccCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003868 366 GLIDEAKSLFEAMRERN---LLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHA 442 (790)
Q Consensus 366 g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 442 (790)
|++++|...+....+.+ ...+..........+....+............. ...............+....+...+.
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHH
Confidence 99999999999887643 345555556666667777777766666555433 33444455556667777888888877
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003868 443 QLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR 519 (790)
Q Consensus 443 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 519 (790)
...... +.+...+..+...+...|+.++|...+++..+ .+...|..+...+...|++++|+..|++....+ ..+.
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 777664 45567888899999999999999999987643 467789999999999999999999999998853 3345
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 003868 520 ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGC 597 (790)
Q Consensus 520 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~ 597 (790)
..+..+..++...|++++|...|+++.+. .+.+...+..+...+.+.|++++|.+.++.. ..+.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 67788888999999999999999998863 3445788999999999999999999999876 2345778899999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 598 RIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 598 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1e-12 Score=134.07 Aligned_cols=227 Identities=15% Similarity=0.060 Sum_probs=156.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003868 388 VMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCG 467 (790)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 467 (790)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+++.. +.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---------------- 85 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---------------- 85 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cc----------------
Confidence 34556667777777777777766642 2234455555556666666666666666555542 22
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHc
Q 003868 468 VVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRIT----------------FLTVLSACNH 531 (790)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~~ 531 (790)
+...|..+...|...|++++|.+.+++... ..|+... ....+..+..
T Consensus 86 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 86 ---------------NQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHHH
T ss_pred ---------------cccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 333444444455555555555555555544 2222111 1111223344
Q ss_pred cCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Q 003868 532 AGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQA 609 (790)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 609 (790)
.+...+|...|....+.....++...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|++.
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 56677888888877653233456678888999999999999999999885 3334 577899999999999999999999
Q ss_pred HHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 610 AEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 610 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.4e-12 Score=131.15 Aligned_cols=267 Identities=12% Similarity=0.016 Sum_probs=193.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003868 356 NAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG 432 (790)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 432 (790)
-.....+.+.|++++|...|+++.+. +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34566789999999999999999864 35789999999999999999999999988753 335667778888899999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLK 512 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 512 (790)
++++|.+.+..+....... ............ ..+.......+..+...+...+|.+.|.+..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999987753211 110000000000 00111111122334445667889999988876
Q ss_pred cC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 003868 513 EG-ILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPI 589 (790)
Q Consensus 513 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 589 (790)
.. -.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.+++. ...| +..+
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 32 1223456777888899999999999999998753 3445778889999999999999999999876 3445 5678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcch-----------HhhHHHHHhcCChhHHHH
Q 003868 590 WEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTY-----------VLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 590 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~~ 642 (790)
|..+..+|...|++++|+..+++++++.|++...+ ..+..++...|+++.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999988876543 345566666677665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.8e-08 Score=101.32 Aligned_cols=193 Identities=11% Similarity=-0.001 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC-------CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhh
Q 003868 457 NALITMYARCGVVEAANCVFNTMP-------NV----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD----RIT 521 (790)
Q Consensus 457 ~~li~~y~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 521 (790)
..+...|...|++..|...+.... .+ ....+..+...+...|+++.+...+.+.....-... ..+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 344445555555555555544321 11 122444556667777888888887777765322211 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHcccCC---CCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHH
Q 003868 522 FLTVLSACNHAGLVKEGRRYFETMHGPY---GIPP--GEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-----SAPIW 590 (790)
Q Consensus 522 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~ 590 (790)
+......+...+...++...+....... +..+ ....+..+...+...|++++|...+++. ...| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4444555666777777776665543311 1111 1234555666777888888888888765 1111 23456
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQL------MPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777888888999998888887743 344556788889999999999999998887754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=4.5e-08 Score=97.88 Aligned_cols=185 Identities=10% Similarity=0.100 Sum_probs=142.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-HhHHHHHHHHHHhcCChHHHHHHHH
Q 003868 433 ALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN--V-D-SVSWNAMIAALGQHGNGARAIELYE 508 (790)
Q Consensus 433 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 508 (790)
..+++..+++..++...+.+...+..++..+.+.|+.+.|..+|+.+.+ | + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765566777888888888999999999999987643 2 3 3478888888888999999999999
Q ss_pred HHHHcCCCCCh-hhHHHHHH-HHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 003868 509 QMLKEGILPDR-ITFLTVLS-ACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL----P 582 (790)
Q Consensus 509 ~m~~~g~~p~~-~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 582 (790)
++.+. .|+. ..|..... -+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++. +
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 98874 3433 33333332 234468899999999988863 4556778888999999999999999998875 3
Q ss_pred CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 003868 583 FKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA 621 (790)
Q Consensus 583 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 621 (790)
..|+ ...|...+..-..+|+.+.+..+++++.+..|.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3442 46788888888889999999999999988888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=5.7e-08 Score=98.97 Aligned_cols=155 Identities=9% Similarity=-0.028 Sum_probs=89.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCh----hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCC--ChhHHHH
Q 003868 489 AMIAALGQHGNGARAIELYEQMLKEG--ILPDR----ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPP--GEDHYAR 560 (790)
Q Consensus 489 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~ 560 (790)
.+...+...|+..++...+.+..... ..... ..+..+...+...|++++|...+....+.....+ ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 33444555556666655555443311 11111 2344445566677777777777777654311111 1234455
Q ss_pred HHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---------cc
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-------PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHA---------GT 623 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~ 623 (790)
+...+...|++++|.+.+++. +..|+ ..+|..+...+...|++++|.+.+++++++.+... ..
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 677777788888887777654 33343 34677778888888999999999988887643321 12
Q ss_pred hHhhHHHHHhcCChhHHHHH
Q 003868 624 YVLLSNMYANLGRWDDAARV 643 (790)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~ 643 (790)
+..+...+...++.+++.+-
T Consensus 337 ~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHH
Confidence 33344455566777766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=2.7e-09 Score=108.52 Aligned_cols=229 Identities=8% Similarity=-0.053 Sum_probs=161.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHH
Q 003868 396 NGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLG--ALENGRQLHAQLVHSGYDSSLSAG-NALITMYARCGVVEAA 472 (790)
Q Consensus 396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A 472 (790)
.|++++|+..++...+.. +-+...+..+..++...+ +++++...+..+.+... .+...+ ..+...+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 344677888888877653 224445555555555444 47788888888877643 334443 3455677778999999
Q ss_pred HHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCC
Q 003868 473 NCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPY 549 (790)
Q Consensus 473 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 549 (790)
...++.+.+ .+..+|+.+...+.+.|++++|...+++..+ +.|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 999988775 3677888888888899988888766655444 223222 223334455666677777776654
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 550 GIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 550 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
..+++...+..++..+...|+.++|.+.+.+. ...| +..+|..+...+...|+.++|...++++++++|.+...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 33455556667778888889999999988875 4445 446788888999999999999999999999999998888888
Q ss_pred HHHHHh
Q 003868 628 SNMYAN 633 (790)
Q Consensus 628 ~~~~~~ 633 (790)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=9.2e-09 Score=103.16 Aligned_cols=190 Identities=8% Similarity=0.091 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHH
Q 003868 455 AGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHG-NGARAIELYEQMLKEGILPDR-ITFLTVLSAC 529 (790)
Q Consensus 455 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 529 (790)
+++.+...+.+.+..++|.+.++.+.+ .+...|+.....+...| ++++|+..+++..+ ..|+. .+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHH
Confidence 334444445555555555555555442 24455666555555544 35666666666665 34543 3566666666
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC-----
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGN----- 602 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----- 602 (790)
...|++++|+++++.+.+ --+.+...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 666666666666666664 22334566666666666666666666666654 2333 45556655554444333
Q ss_pred -HHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 603 -IDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 603 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+++|+..+.+++++.|++...+..++.++...| .+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 456777777777777777777766666655443 4566666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.6e-08 Score=97.94 Aligned_cols=188 Identities=9% Similarity=0.106 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHH
Q 003868 454 SAGNALITMYARCG-VVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSA 528 (790)
Q Consensus 454 ~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 528 (790)
.+|+.....+.+.| ++++|...++...+ .+..+|+.+...+...|++++|++.++++.+ ..|+ ...|..+...
T Consensus 78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~ 155 (315)
T d2h6fa1 78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWV 155 (315)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHH
Confidence 34444444444443 25555555554432 3556666666667777777777777777776 3454 3466667777
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK------FSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH 600 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 600 (790)
+.+.|++++|.+.++.+.+. -+-+...|+.+..++.+.+. +++|.+.+.+. ...| +...|..+...+..
T Consensus 156 ~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~- 232 (315)
T d2h6fa1 156 IQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD- 232 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-
T ss_pred HHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-
Confidence 77777777777777777642 23345566666666655554 46677766654 3344 66778777666544
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc--chHhhHHHHHhc--CChhHHHHHHHH
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAG--TYVLLSNMYANL--GRWDDAARVRKL 646 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~~~~~~ 646 (790)
...+++...++++.++.|+... .+..++.+|... +..+.+...+++
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 233 RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4457788888888888877543 445666766543 344444444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.4e-08 Score=97.04 Aligned_cols=199 Identities=11% Similarity=-0.039 Sum_probs=117.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHh
Q 003868 420 AFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQ 496 (790)
Q Consensus 420 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 496 (790)
++..+..++.+.|++++|.+.|..+++.. +.+..+++.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444555666666666666666666553 34566677777777777777777777776653 245677778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCC----h
Q 003868 497 HGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGK----F 571 (790)
Q Consensus 497 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~ 571 (790)
.|++++|+..|++..+. .|+. .....+..++...+..+....+....... .+....+. ++..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHH
Confidence 88888888888888773 4543 33333334444555555554444444332 22222222 2222221111 2
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchH
Q 003868 572 SEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYV 625 (790)
Q Consensus 572 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 625 (790)
+.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222111 11222 246777888899999999999999999999998854443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.4e-08 Score=98.90 Aligned_cols=192 Identities=16% Similarity=0.057 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHH
Q 003868 454 SAGNALITMYARCGVVEAANCVFNTMPN---VDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSAC 529 (790)
Q Consensus 454 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 529 (790)
.++..+...|.+.|++++|.+.|++..+ .++.+|+.+..+|.+.|++++|++.|++..+ +.|+. .++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 4666788999999999999999998753 4788999999999999999999999999998 56765 5788888999
Q ss_pred HccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH----HHhCCHH
Q 003868 530 NHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPSAPIWEALLAGC----RIHGNID 604 (790)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~----~~~g~~~ 604 (790)
...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++...++. +..+ ...+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 9999999999999998863 2334444444555556666555554444332 11222222222 1111 1223344
Q ss_pred HHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 605 LGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 605 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
.+...+.......|....+|..|+..|...|++++|.+.+++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4444445555566777778999999999999999999999998753
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=2.9e-07 Score=91.78 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=142.5
Q ss_pred CCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCCHHHHHH
Q 003868 467 GVVEAANCVFNTMP----NVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR--ITFLTVLSACNHAGLVKEGRR 540 (790)
Q Consensus 467 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 540 (790)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++.+ ..|.. ..|...+..+.+.|.++.|.+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 34577888887643 24667888899999999999999999999987 45543 468888999999999999999
Q ss_pred HHHHcccCCCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 003868 541 YFETMHGPYGIPPGEDHYARFIDLL-CRAGKFSEAKDVIDSL--PFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLM 617 (790)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 617 (790)
+|+.+.+. .+.+...|....... ...|+.+.|..+|+.+ ..+.+...|..++..+...|+++.|..+|++++...
T Consensus 156 i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999863 333455555555443 3468999999999887 223467889999999999999999999999999987
Q ss_pred CCCCc----chHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 618 PHHAG----TYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 618 p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|.++. .|...+..-...|+.+.+.++.+++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76543 566667766788999999999998865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=1.1e-07 Score=96.18 Aligned_cols=230 Identities=10% Similarity=-0.031 Sum_probs=162.0
Q ss_pred HcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCChHHH
Q 003868 364 SAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNG--YGEEGLKLFSQMRLEGFKPCDYAF-AGAITSCAGLGALENG 437 (790)
Q Consensus 364 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a 437 (790)
..|++++|+..++...+. +...|..+..++...+ ++++|+..+.++.... +++...+ ......+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 345567788888777653 4566777777776655 4688888888888764 2334443 3444566677888999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003868 438 RQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILP 517 (790)
Q Consensus 438 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 517 (790)
...+..+++.. +.+...++.+...|.+.|++++|...+....+....... ....+...+..+++...+.+..... .+
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~~~~~l~~~-~~ 240 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWLLGR-AE 240 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH-HHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence 88888887765 456778888999999999988887666655442222222 2334455677778888888888742 33
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003868 518 DRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLA 595 (790)
Q Consensus 518 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 595 (790)
+..++..+...+...|+.++|...+....+. .+.+...+..+...|.+.|++++|.+.+++. .+.|+ ...|..|..
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 3456666777788889999999999988753 2335677888999999999999999999987 45563 456777766
Q ss_pred HHHH
Q 003868 596 GCRI 599 (790)
Q Consensus 596 ~~~~ 599 (790)
.+..
T Consensus 319 ~~~~ 322 (334)
T d1dcea1 319 KFLL 322 (334)
T ss_dssp HHHH
T ss_pred HHhH
Confidence 5554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=7e-07 Score=82.51 Aligned_cols=115 Identities=9% Similarity=-0.119 Sum_probs=66.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003868 517 PDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALL 594 (790)
Q Consensus 517 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 594 (790)
|+...+......+...|++++|+..|+.+.+. .+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 45555555566666666666666666665542 2334555666666666666666666666554 3444 344566666
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 595 AGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 595 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
.++...|++++|+..+++++++.|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 666666666666666666666666555554444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.9e-06 Score=71.37 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh
Q 003868 561 FIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD 638 (790)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 638 (790)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456677888888888888876 3334 66778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003868 639 DAARVRKLMRD 649 (790)
Q Consensus 639 ~a~~~~~~m~~ 649 (790)
+|...+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.3e-06 Score=76.22 Aligned_cols=139 Identities=8% Similarity=-0.057 Sum_probs=102.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHH
Q 003868 460 ITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEG 538 (790)
Q Consensus 460 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 538 (790)
...+...|+++.|.+.|+++..++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45567789999999999998888888899999999999999999999999988 55655 5778888888899999999
Q ss_pred HHHHHHcccCCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 003868 539 RRYFETMHGPYGIPPGED-HYARFIDLLCRAGKFSEAKDVIDSLPFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQL 616 (790)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 616 (790)
...|++.... .+.+.. .|. ..| ...+.+ ..++..+..++...|++++|.+.+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988887642 122210 000 000 001111 235566777788889999999999999888
Q ss_pred CCCC
Q 003868 617 MPHH 620 (790)
Q Consensus 617 ~p~~ 620 (790)
.|..
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8775
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.9e-06 Score=71.42 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=83.2
Q ss_pred HHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCH
Q 003868 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 526 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~ 603 (790)
...+...|++++|..+|+.+.+ -.+.+...|..+..+|.+.|++++|++.+++. .+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4556777888888888888775 23456677888888888888888888888775 22 34677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHhhHHHH
Q 003868 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMY 631 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 631 (790)
++|+..++++++.+|+++..+..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999988877776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=1.6e-06 Score=79.95 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 553 PGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 553 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
|+...+......|.+.|++++|++.|++. ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444444455555555555555555443 2222 344455555555555555555555555555555555555555555
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003868 631 YANLGRWDDAARVRKLMR 648 (790)
Q Consensus 631 ~~~~g~~~~a~~~~~~m~ 648 (790)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=1.4e-06 Score=71.63 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=79.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCCh
Q 003868 560 RFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRW 637 (790)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 637 (790)
.+...+.+.|++++|...|++. ...| +..+|..+...+...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788999999999999886 3345 6789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 003868 638 DDAARVRKLM 647 (790)
Q Consensus 638 ~~a~~~~~~m 647 (790)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=6.9e-06 Score=72.30 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=86.1
Q ss_pred HHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH
Q 003868 526 LSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 526 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 603 (790)
...|.+.|++++|...|+++.+. .+.+...|..+...|...|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34566777777777777777652 2445667777888888888888888888765 3344 567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHhhHHHHH--hcCChhHHHHH
Q 003868 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYA--NLGRWDDAARV 643 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 643 (790)
++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777765543 34456666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=4.5e-06 Score=81.98 Aligned_cols=189 Identities=11% Similarity=0.028 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhhHHH
Q 003868 459 LITMYARCGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGI---LPD--RITFLT 524 (790)
Q Consensus 459 li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 524 (790)
....|...|++++|.+.|.+..+ . -..+|+.+...|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35567777888877777776542 1 135778888888889999999988887654211 111 134555
Q ss_pred HHHHHH-ccCCHHHHHHHHHHcccCC---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CH-HHH
Q 003868 525 VLSACN-HAGLVKEGRRYFETMHGPY---GIPP-GEDHYARFIDLLCRAGKFSEAKDVIDSLP-F---KP----SA-PIW 590 (790)
Q Consensus 525 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p----~~-~~~ 590 (790)
+...|. ..|++++|.+.++...+.+ +.++ ...++..+...|.+.|++++|.+.+++.. . .+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998765321 1112 13457788999999999999999998751 1 11 11 233
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc-----hHhhHHHHHh--cCChhHHHHHHHHH
Q 003868 591 EALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT-----YVLLSNMYAN--LGRWDDAARVRKLM 647 (790)
Q Consensus 591 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~m 647 (790)
...+..+...|+.+.|...++++.+.+|..+.+ ...|+.++.. .+++++|...|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445556677899999999999999998864433 3445555554 34678888877644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5e-05 Score=68.82 Aligned_cols=120 Identities=12% Similarity=-0.071 Sum_probs=87.2
Q ss_pred HHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCChHHHHH
Q 003868 328 VTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER---NLLSWTVMISGLAQNGYGEEGLK 404 (790)
Q Consensus 328 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 404 (790)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++..+. +...|..+...|.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 445678899999999999988888888888999999999999999999888763 45788888899999999999998
Q ss_pred HHHHHHHcCCC--------------CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 003868 405 LFSQMRLEGFK--------------PC-DYAFAGAITSCAGLGALENGRQLHAQLVHS 447 (790)
Q Consensus 405 ~~~~m~~~g~~--------------p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 447 (790)
.|++....... ++ ..++..+..++.+.|++++|.+.+..+.+.
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88887653110 01 122334444555566666666655555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.1e-06 Score=72.64 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCC
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGR 636 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 636 (790)
......|.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++++++|++..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34466788999999999999986 3344 678899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 003868 637 WDDAARVRKLMRD 649 (790)
Q Consensus 637 ~~~a~~~~~~m~~ 649 (790)
+++|.+.+++...
T Consensus 94 ~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 94 FRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.8e-06 Score=69.78 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 003868 523 LTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKF---SEAKDVIDSL-PFKPSA---PIWEALLA 595 (790)
Q Consensus 523 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 595 (790)
..+++.+...+++++|.+.|+.... .-+.+..++..+..+|.+.++. ++|++++++. ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3466777777888888888888775 2345667777788888765544 4588888875 334433 36788899
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHH
Q 003868 596 GCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNM 630 (790)
Q Consensus 596 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 630 (790)
+|...|++++|++.++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999997666555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=6.5e-05 Score=73.36 Aligned_cols=116 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH
Q 003868 466 CGVVEAANCVFNTMPN-----V----DSVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR------ITFLTVLSACN 530 (790)
Q Consensus 466 ~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~ 530 (790)
.|++++|.+.|++..+ . -..+|..+...|...|++++|+..|++.......... ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 3555555555554321 0 1234666777888888888888888887763211111 11233444556
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCC---hhHHHHHHHHHHh--cCChHHHHHHHHhC
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPG---EDHYARFIDLLCR--AGKFSEAKDVIDSL 581 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~--~g~~~~A~~~~~~~ 581 (790)
..|+++.|...++...+...--++ ......++.++.. .+.+++|...|+++
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678888888888877653111111 1233445555544 34577777777765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=3.3e-05 Score=68.51 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
+|+.+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5666777788889999999999999999999988999999999999999999999988865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=5.1e-05 Score=65.89 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 588 PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 588 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.++..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=3.7e-05 Score=68.18 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..+......+.+.|++++|+..|++.++. .|....+. . .+ ......+ ...+|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~~---------~--~~-~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFS---------N--EE-AQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCC---------S--HH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccccc---------h--HH-Hhhhchh--------HHHHHHHHHHH
Confidence 34555566778888888888888887763 22111100 0 00 0000000 12356778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDA 640 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 640 (790)
|.+.|++++|+..+++. ...| ++..|..+..++...|++++|+..++++++++|+|+.+...+..+....+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 3445 7788999999999999999999999999999999999999998888777666544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0069 Score=58.95 Aligned_cols=295 Identities=14% Similarity=0.088 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 003868 79 PDIVARTTLIAAYSASDNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTFTSVLSA 158 (790)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 158 (790)
||..--..+.+-|-+.|.++.|..++..+.. |..++..+.+.++++.|.+.+.... +..+|..+..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 78 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 5544445556666788888888888888877 8888888888888888888876552 45577777777
Q ss_pred Hhcchh-hhhhhhhHHHHHHHhCCCCchhHHHHHHHhhhccCCCCccCCCCCHHHHHHHHccCC---CCCeeeHHHHHHH
Q 003868 159 LALIVE-EEKQCMQMHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMP---ERDELSWTTMMTG 234 (790)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 234 (790)
|..... .. ..+.......++.-...++..|-.. |..++...+++... ..+...++.++..
T Consensus 79 l~~~~e~~l-------a~i~~~~~~~~~d~l~~~v~~ye~~---------~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l 142 (336)
T d1b89a_ 79 CVDGKEFRL-------AQMCGLHIVVHADELEELINYYQDR---------GYFEELITMLEAALGLERAHMGMFTELAIL 142 (336)
T ss_dssp HHHTTCHHH-------HHHTTTTTTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHhCcHHHH-------HHHHHHHhhcCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence 765433 11 1122222334444455677777776 77777777777432 2355567777777
Q ss_pred HHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 003868 235 YVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAYLLRTEAK 314 (790)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 314 (790)
|++.+ .++-.+.+... .+..-...++..|.+.+-
T Consensus 143 yak~~-~~kl~e~l~~~----------------------------s~~y~~~k~~~~c~~~~l----------------- 176 (336)
T d1b89a_ 143 YSKFK-PQKMREHLELF----------------------------WSRVNIPKVLRAAEQAHL----------------- 176 (336)
T ss_dssp HHTTC-HHHHHHHHHHH----------------------------STTSCHHHHHHHHHTTTC-----------------
T ss_pred HHHhC-hHHHHHHHHhc----------------------------cccCCHHHHHHHHHHcCC-----------------
Confidence 77654 33333333322 011222233333333222
Q ss_pred CCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHH
Q 003868 315 PTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLA 394 (790)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 394 (790)
|..++-.|.+.|+++.|..+.-.-+ +++......+..+.+.++.+...++.....+.++...+.++....
T Consensus 177 ---------~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~ 246 (336)
T d1b89a_ 177 ---------WAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS 246 (336)
T ss_dssp ---------HHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHG
T ss_pred ---------hHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 3345556666777776665443321 122223334444555555433332222222212222222222222
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003868 395 QNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANC 474 (790)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 474 (790)
..-+.. .++..+.+.+++......+......+ +..+.++|.+.|...++.+.-++
T Consensus 247 ~~~d~~----------------------r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 247 PRLDHT----------------------RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp GGCCHH----------------------HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHH----------------------HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 222222 23344445566666667776655544 34688899999999988766665
Q ss_pred HHhcCCCCC
Q 003868 475 VFNTMPNVD 483 (790)
Q Consensus 475 ~~~~~~~~~ 483 (790)
..+.-..-|
T Consensus 302 ~i~~~~~fd 310 (336)
T d1b89a_ 302 SIDAYDNFD 310 (336)
T ss_dssp HHHHCCCSC
T ss_pred HHHHhcccC
Confidence 555444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.96 E-value=0.00037 Score=66.62 Aligned_cols=226 Identities=12% Similarity=-0.046 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 003868 382 NLLSWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAG----LGALENGRQLHAQLVHSGYDSSLSAGN 457 (790)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~ 457 (790)
|+..+..+...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34566667777777777788887777776655 23333333333332 334555555555544443
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---
Q 003868 458 ALITMYARCGVVEAANCVFNTMPNVDSVSWNAMIAALGQ----HGNGARAIELYEQMLKEGILPDRITFLTVLSACN--- 530 (790)
Q Consensus 458 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--- 530 (790)
+...+..+...+.. ..+.+.|...+++..+.|..+ ....+...+.
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCC
Confidence 22222223222222 345566666666666544211 1111111111
Q ss_pred -ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hC
Q 003868 531 -HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR----AGKFSEAKDVIDSLPFKPSAPIWEALLAGCRI----HG 601 (790)
Q Consensus 531 -~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 601 (790)
.......+...+..... ..+...+..|...|.. ..+...+...++......+...+..|...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 23345566666655443 2344556666666654 34555666666654333466666666666654 56
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 003868 602 NIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 602 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 653 (790)
+++.|+..|+++.+.. ++..+..|+.+|.. ..+.++|.+++++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999998874 56788899999986 34799999999999887753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=2.7e-05 Score=65.28 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc-------hHhhH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT-------YVLLS 628 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 628 (790)
+..+...+.+.|++++|++.|++. ...| +..+|..+..+|...|+++.|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456778888999999999998876 3334 67889999999999999999999999999999888764 55566
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003868 629 NMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 629 ~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999988754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.4e-05 Score=66.15 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCC--CcchHhhHHHH
Q 003868 559 ARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIH---GNIDLGIQAAEQLFQLMPHH--AGTYVLLSNMY 631 (790)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 631 (790)
..++..+...+++++|++.|++. ...| +..++..+..++.+. +++++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46778888999999999999986 3334 677888888888654 45668999999999988765 34889999999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003868 632 ANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 632 ~~~g~~~~a~~~~~~m~~ 649 (790)
.+.|++++|.+.++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999999976
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=6.7e-05 Score=66.44 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 586 SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 586 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
....|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456777888889999999999999999999999999999999999999999999999999876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.78 E-value=9.1e-05 Score=65.42 Aligned_cols=143 Identities=9% Similarity=0.013 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHH
Q 003868 485 VSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDL 564 (790)
Q Consensus 485 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 564 (790)
..+.-....+.+.|++.+|+..|++.... .|.... ...+. ......+ ....|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~~-----------~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEYG-----------LSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS-----------CCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhhc-----------cchhh-hhhcchh--------HHHHHHhHHHH
Confidence 34555666777788888888887775541 111000 00000 0000100 12356677888
Q ss_pred HHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChh-HHH
Q 003868 565 LCRAGKFSEAKDVIDSL-PF-KPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWD-DAA 641 (790)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~a~ 641 (790)
|.+.|++++|+..+++. .. +.+...|..+..++...|++++|+..++++++++|+++.+...+..+....+... ...
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999998876 33 3467889999999999999999999999999999999999999888887777654 455
Q ss_pred HHHHHHHh
Q 003868 642 RVRKLMRD 649 (790)
Q Consensus 642 ~~~~~m~~ 649 (790)
+++..|.+
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=6.7e-05 Score=66.43 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHh
Q 003868 488 NAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCR 567 (790)
Q Consensus 488 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 567 (790)
......+...|++++|++.|++.++. . ..........+.. . -.+.....|..+..+|.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~----------~~~~~~~~~~~~~------~---~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--V----------EGSRAAAEDADGA------K---LQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--H----------HHHHHHSCHHHHG------G---GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--h----------hhhhhhhhhHHHH------H---hChhhHHHHHHHHHHHHh
Confidence 34455677788888888888876641 0 0000011111110 0 011234567778889999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhH
Q 003868 568 AGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDD 639 (790)
Q Consensus 568 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 639 (790)
.|++++|+..+++. .+.| +...|..+..++...|+++.|+..++++++++|+++.++..|..+..+.....+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 5555 667899999999999999999999999999999999888888777765554444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.00022 Score=62.85 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 589 IWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 589 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
++..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.++++.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777889999999999999999999999999999999999999999999999999876
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=4.8e-06 Score=88.63 Aligned_cols=146 Identities=12% Similarity=-0.028 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCCHHHHHHHHHHcccCCCCCC-ChhHHHHHHHHHHhcCChHHHHH
Q 003868 500 GARAIELYEQMLKEGILPDRITFLTVLSAC--NHAGLVKEGRRYFETMHGPYGIPP-GEDHYARFIDLLCRAGKFSEAKD 576 (790)
Q Consensus 500 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 576 (790)
+..+.+.+++..+....|+..-....+..+ ...+.++.+...+.... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345566666665544344443222222221 22344555554444332 3333 34556667777777777777776
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 577 VIDSLPFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 577 ~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
.+++.- .++ ..++..+...++..|++++|+..|++++++.|++..+|+.|+.+|...|+..+|...+.+...
T Consensus 142 ~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 142 PQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp -CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554431 111 245667777788888888888888888888888888888888888888888888877777654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00019 Score=62.06 Aligned_cols=128 Identities=8% Similarity=-0.056 Sum_probs=91.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHH
Q 003868 484 SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFID 563 (790)
Q Consensus 484 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 563 (790)
...+......+.+.|++.+|+..|++.+.. .|..... .-......... ....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHH
Confidence 345666777888889999999999888762 2211100 00000000000 12346778889
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHH
Q 003868 564 LLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYA 632 (790)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 632 (790)
.|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|+..++++++++|+|+.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999885 4445 67899999999999999999999999999999999887776655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.60 E-value=0.012 Score=55.58 Aligned_cols=156 Identities=10% Similarity=-0.035 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003868 351 DLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLLSWTVMISGLAQ----NGYGEEGLKLFSQMRLEGFKPCDYAFAGAI 425 (790)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 425 (790)
|+..+..+...+.+.+++++|++.|++..+. +..++..|...|.. ..+...|...+......+. | .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhccc
Confidence 4567788888889999999999999998764 56777778888876 5688899999988877652 2 2222332
Q ss_pred HHHH----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCHhHHHHHHHHHHh
Q 003868 426 TSCA----GLGALENGRQLHAQLVHSGYDSSLSAGNALITMYAR----CGVVEAANCVFNTMP-NVDSVSWNAMIAALGQ 496 (790)
Q Consensus 426 ~~~~----~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 496 (790)
..+. ...+.+.|...+....+.|.. .....+...+.. ......+...+.... ..+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 2222 245677888888887776532 222223333332 223444444444322 2344455555554443
Q ss_pred ----cCChHHHHHHHHHHHH
Q 003868 497 ----HGNGARAIELYEQMLK 512 (790)
Q Consensus 497 ----~g~~~~A~~~~~~m~~ 512 (790)
..+...+...++...+
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD 174 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccc
Confidence 2233444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.00015 Score=64.46 Aligned_cols=120 Identities=15% Similarity=0.049 Sum_probs=85.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCH
Q 003868 524 TVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNI 603 (790)
Q Consensus 524 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 603 (790)
.........|++++|.+.|.....-+.-.+-... ...........-++. .....|..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3345667889999999999988764322211100 000000111111111 1235678889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 003868 604 DLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRD-----RGVKKE 655 (790)
Q Consensus 604 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 655 (790)
++|+..++++++.+|.+...|..|+.+|...|++++|.+.|+++.+ .|+.|.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999843 577654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=0.034 Score=53.83 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhcccCCcchhhHHHHhhhhhHHHHHHhCccCChhhHHHHHHHHHccCChHHHHHHHHH
Q 003868 228 WTTMMTGYVKNDYLDAAREFLDGMSENVGVAWNALISGYVHRELKMLMLRIQLDEFTYTSVISACANSGLFRLGKQVHAY 307 (790)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~li~~~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 307 (790)
|..++-.|.+.|++++|..+.-.- .++..-....+..+.+..+.+..-++...
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~i~~---------------------------~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITMMNH---------------------------PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS---------------------------TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHc---------------------------chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 556666666666776666655432 23444455556666666777766666665
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccC-ChhHH
Q 003868 308 LLRTEAKPTPEFSLPVNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRER-NLLSW 386 (790)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~ 386 (790)
.++ . ++...+.|+......-+..+..+.|+. .++..-....++...+. +....
T Consensus 230 yL~----~----~p~~i~~lL~~v~~~~d~~r~V~~~~k------------------~~~l~li~p~Le~v~~~n~~~vn 283 (336)
T d1b89a_ 230 YLE----F----KPLLLNDLLMVLSPRLDHTRAVNYFSK------------------VKQLPLVKPYLRSVQNHNNKSVN 283 (336)
T ss_dssp HHH----H----CGGGHHHHHHHHGGGCCHHHHHHHHHH------------------TTCTTTTHHHHHHHHTTCCHHHH
T ss_pred HHH----c----CHHHHHHHHHHhccCCCHHHHHHHHHh------------------cCCcHHHHHHHHHHHHcChHHHH
Confidence 554 2 123345555555444455444444433 33333333444443332 23455
Q ss_pred HHHHHHHHhcCChHH
Q 003868 387 TVMISGLAQNGYGEE 401 (790)
Q Consensus 387 ~~li~~~~~~g~~~~ 401 (790)
+++...|...++++.
T Consensus 284 ~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 284 ESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCcchhHH
Confidence 666666666666433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.54 E-value=0.00017 Score=58.58 Aligned_cols=85 Identities=11% Similarity=-0.084 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcC
Q 003868 491 IAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAG 569 (790)
Q Consensus 491 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 569 (790)
...+.+.|++++|+..|++.++ ..|+. ..|..+..++.+.|++++|...|+...+ -.+.+...+..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCC
Confidence 3344445555555555555554 23432 3444444445555555555555554443 11223344444444444444
Q ss_pred ChHHHHHHHH
Q 003868 570 KFSEAKDVID 579 (790)
Q Consensus 570 ~~~~A~~~~~ 579 (790)
++++|.+.++
T Consensus 99 ~~~~A~~~l~ 108 (112)
T d1hxia_ 99 NANAALASLR 108 (112)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00011 Score=62.96 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcc----------CCHHHHHHHHHHcccCCCCCCChhHHHHHH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPDRI-TFLTVLSACNHA----------GLVKEGRRYFETMHGPYGIPPGEDHYARFI 562 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 562 (790)
|-+.+.+++|++.|++..+ +.|+.. .+..+..++... +.+++|+..|+++.+. -+.+...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 3445567777777777776 456553 455555555433 2334455555544431 122334444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHH
Q 003868 563 DLLCRAGKFSEAKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAAR 642 (790)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 642 (790)
.+|...|++. ++... ..++++.|.+.|+++++++|++...+..|... .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 4443332211 11110 11246889999999999999997666555544 46667
Q ss_pred HHHHHHhCCC
Q 003868 643 VRKLMRDRGV 652 (790)
Q Consensus 643 ~~~~m~~~g~ 652 (790)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777766664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.00044 Score=59.91 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=64.3
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------
Q 003868 562 IDLLCRAGKFSEAKDVIDSL----PFKPS----------APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH------- 620 (790)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------- 620 (790)
...+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445566666666666554 11121 3568888888999999999999999988764321
Q ss_pred ----CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 621 ----AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 621 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
..+|..++.+|...|++++|.+.+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578899999999999999999999865
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00059 Score=53.18 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL----P----FKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
.+-.+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445667777777777777776654 1 1223 45788899999999999999999999999999998887776
Q ss_pred HH
Q 003868 628 SN 629 (790)
Q Consensus 628 ~~ 629 (790)
..
T Consensus 87 ~~ 88 (95)
T d1tjca_ 87 KY 88 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.16 E-value=0.00018 Score=61.45 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=58.4
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh
Q 003868 566 CRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRI----------HGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN 633 (790)
Q Consensus 566 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 633 (790)
-|.+.+++|.+.|++. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444555555555554 2223 34444444444432 2456789999999999999999999999999988
Q ss_pred cCC-----------hhHHHHHHHHHHh
Q 003868 634 LGR-----------WDDAARVRKLMRD 649 (790)
Q Consensus 634 ~g~-----------~~~a~~~~~~m~~ 649 (790)
.|+ +++|.+.|++..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 764 5788888888865
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0013 Score=54.50 Aligned_cols=59 Identities=10% Similarity=0.002 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHcc
Q 003868 486 SWNAMIAALGQHGNGARAIELYEQMLKEGILPD-RITFLTVLSACNHAGLVKEGRRYFETMH 546 (790)
Q Consensus 486 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 546 (790)
.+..+...+.+.|++++|+..|++.++. .|+ ...+..+..+|...|++++|...++.+.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3445556666677777777777776663 443 3455556666666666666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.07 E-value=0.00054 Score=64.96 Aligned_cols=128 Identities=10% Similarity=-0.059 Sum_probs=87.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCC-hhHHHHHHHHHHhcCChH
Q 003868 495 GQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPG-EDHYARFIDLLCRAGKFS 572 (790)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 572 (790)
.+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|...|+...+ ..|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 456888999999998888 56665 5778888888899999999998888875 3454 445555555555555555
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhh
Q 003868 573 EAKDVIDSL--PFKPS-APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLL 627 (790)
Q Consensus 573 ~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 627 (790)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+...
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~ 139 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT 139 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccccc
Confidence 443332221 12232 23344445667888999999999999999999887665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00018 Score=75.98 Aligned_cols=112 Identities=9% Similarity=-0.029 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 003868 453 LSAGNALITMYARCGVVEAANCVFNTMPNVD-SVSWNAMIAALGQHGNGARAIELYEQMLKEGILPDR-ITFLTVLSACN 530 (790)
Q Consensus 453 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 530 (790)
...+..+...+.+.|+.++|...+.....++ ..++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHH
Confidence 3444555555666666666655554433222 13455556666666666666666666666 45555 46666666666
Q ss_pred ccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhc
Q 003868 531 HAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRA 568 (790)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 568 (790)
..|+..+|...|.+... -.+|-...+..|...|.+.
T Consensus 198 ~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 66666666666666654 2345555566666555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0035 Score=48.51 Aligned_cols=63 Identities=16% Similarity=-0.028 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------CcchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 587 APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHH-------AGTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 587 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
...+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3345577888999999999999999999886554 34688899999999999999999999976
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.81 E-value=0.0035 Score=53.92 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSL--------PFKPS-----APIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
.|+.+..+|...|++++|.+.+++. ...++ ..++..+..+|...|++++|+..|++++++.|.....
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 4455555566666666555554432 11222 1256778888999999999999999999987655433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.0076 Score=52.93 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003868 558 YARFIDLLCRAGKFSEAKDVIDSL-PFKP-SAPIWEALLAGCRIHGNIDLGIQAAEQL 613 (790)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 613 (790)
+..+...+.+.|++++|...++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444455555555555555555543 2222 4445555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.60 E-value=0.00047 Score=65.36 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=85.8
Q ss_pred HHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHH
Q 003868 529 CNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSEAKDVIDSL-PFKPS-APIWEALLAGCRIHGNIDLG 606 (790)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 606 (790)
..+.|++++|+..+++..+ ..+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 45667899999999999999999999999886 44564 45565555555444433332
Q ss_pred HHHHHHHHh-cCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhC
Q 003868 607 IQAAEQLFQ-LMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDR 650 (790)
Q Consensus 607 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 650 (790)
......... ..|++...+...+..+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111 13444455667788899999999999999998763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.83 E-value=0.65 Score=36.23 Aligned_cols=141 Identities=10% Similarity=0.040 Sum_probs=94.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHcccCCCCCCChhHHHHHHHHHHhcCChHH
Q 003868 494 LGQHGNGARAIELYEQMLKEGILPDRITFLTVLSACNHAGLVKEGRRYFETMHGPYGIPPGEDHYARFIDLLCRAGKFSE 573 (790)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 573 (790)
+...|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-|.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34567778888888777663 233445555544444445555566666654433333 3344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003868 574 AKDVIDSLPFKPSAPIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYANLGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 574 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 653 (790)
...-+-.++ .+....+.-+....++|+-+.-.++++.+++.+..+|.....++++|-+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444443 122334555677888999999999999988887788899999999999999999999999999999985
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=3.8 Score=40.84 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHH
Q 003868 323 VNNALVTLYWKCGKVNEARDIFNQMPERDLVSWNAILSAYVSAGLIDEAKSLFEAMRERNLLSWTVMISGLAQNGYGEEG 402 (790)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 402 (790)
.....+..+.+.+++......+..-+ .+...-.....+..+.|+.++|...+..+-..+. -..+..
T Consensus 74 lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-------------~~p~~c 139 (450)
T d1qsaa1 74 LQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-------------SQPNAC 139 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-------------CCCTHH
T ss_pred HHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------------CCchHH
Confidence 33444566777888877666554432 2344445566777778887777666554422110 012333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 003868 403 LKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYARCGVVEAANCVFNTMPNV 482 (790)
Q Consensus 403 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 482 (790)
-.+|..+...| .++...+-.-+......|+...|..+...+- ..........+..+.+...+.. ...... .
T Consensus 140 ~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~p~~~~~---~~~~~~-~ 210 (450)
T d1qsaa1 140 DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLT---FARTTG-A 210 (450)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHH---HHHHSC-C
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhChHhHHH---HHhcCC-C
Confidence 34444444433 2233333333334444566666655544321 1122334444444433333222 222222 1
Q ss_pred CHhHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHccCCHHHHHHHHHHcccCCCCCCChh
Q 003868 483 DSVSWNAMIAALGQ--HGNGARAIELYEQMLKEGILPDRITFLTV----LSACNHAGLVKEGRRYFETMHGPYGIPPGED 556 (790)
Q Consensus 483 ~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 556 (790)
+......+..++.+ ..+.+.|..++........ .+......+ .......+..+.+...+...... ..+..
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 286 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS 286 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchH
Confidence 22222222222222 2467777777777665421 222211111 12223345566676666655432 23444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003868 557 HYARFIDLLCRAGKFSEAKDVIDSLPFKPS--APIWEALLAGCRIHGNIDLGIQAAEQLFQ 615 (790)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 615 (790)
....++....+.+++..+...+..++..|. ..-.--+..+....|+.+.|...++.+-.
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 444455555667788888888888753332 22224456677777888888888877754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.69 E-value=0.28 Score=39.82 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHhhHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 003868 601 GNIDLGIQAAEQLFQLMPHHAGTYVLLSNMYAN----LGRWDDAARVRKLMRDRGVK 653 (790)
Q Consensus 601 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 653 (790)
.|.++|.+.++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|..
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 46777888888877653 45567777887776 35788888888888777653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.23 E-value=0.44 Score=37.62 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCC-cchHhhHHHHHhcCChhHHHHHHHHHHh
Q 003868 585 PSAPIWEALLAGCRIH---GNIDLGIQAAEQLFQLMPHHA-GTYVLLSNMYANLGRWDDAARVRKLMRD 649 (790)
Q Consensus 585 p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 649 (790)
|...+.-.+..++.+. .+.++|+.++++++..+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444444455555443 344577777777777666553 4666777777777777777777777754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.78 E-value=0.83 Score=36.79 Aligned_cols=58 Identities=7% Similarity=-0.143 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003868 399 GEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGYDSSLSAGNALITMYA 464 (790)
Q Consensus 399 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 464 (790)
+++|+++|++..+.|...-. ..+ +.....+.++|.+.+....+.| +......|..+|.
T Consensus 9 ~~~A~~~~~kaa~~g~~~a~---~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 9 LKKAIQYYVKACELNEMFGC---LSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHTTCTTHH---HHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhhh---hhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 55666666666555522111 111 1122345556666666655554 2333334444443
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| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.64 E-value=3.6 Score=31.95 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 003868 385 SWTVMISGLAQNGYGEEGLKLFSQMRLEGFKPCDYAFAGAITSCAGLGALENGRQLHAQLVHSGY 449 (790)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 449 (790)
..+.-++.+.++|+-++-.++++++.+. -+|++..+..+..+|-+.|+..++.+++.++-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444556667777777777777776664 366777777778888888888888888887777764
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.49 E-value=2.1 Score=33.60 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCcc
Q 003868 555 EDHYARFIDLLCRAGK---FSEAKDVIDSL-PFKP-SA-PIWEALLAGCRIHGNIDLGIQAAEQLFQLMPHHAGT 623 (790)
Q Consensus 555 ~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 623 (790)
..+--....++.+... +++++.++++. ...| +. ..|-.|.-+|.+.|+++.|.+.++++++.+|++..+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3333344444554433 34566666554 1123 32 466778888999999999999999999999998443
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