Citrus Sinensis ID: 003907

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------
Protein Sequence
MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFLDA
Secondary Structure (PSIPRED)
cccccccccccccccHHHcccEEEEEccccccHHHHHcccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEccEEEEEEccccccEEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccEEHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccEEEEEEcccccccccccccccccccccccccccccEEEEEEccEEEEccccccHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEccEEEEcccccccccccccccccccccccccccccHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEEEEEcccEEEEEEccccccEEEEEcccccEEEEEEccccccccccccHHccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEHHHHHccEEEEcccccccccccccccccccccEEEcHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHEEccccccccccccccccccccccccccccEEHHHcccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccEEcccEEEEEEEcccccccccccEEEEEEEcccEEEEccHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkkgkgrnngllpnsLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVtwagfdrleygpsVFKQVLLLGYQNGFQVLDVedasnfnelvskrdgpvsflqmqpfpvkddgcegfrkLHPFLLVVagedtntlapgqnrshlggvrdgmmdsqsgncvnsptavrFYSFQSHCYEHVLRFRSsvcmvrcsprIVAVGLATQIYCFdaltlenkfsvltypvpqlagqgavginvgygpmavgprwLAYASNTlllsnsgrlspqnltpsgvspstspggsSLVARYAMEHSKQFAAGLSKTLSKYCQellpdgssspvspnsvwkvgrhagadmdnagiVVVKDFVTRAIISQFkahtspisalcfdpsgtlLVTASVYgnninifrimpscmrsgsgnhkydwnsshVHLYKLHRGITSATIQDICFSHYSQWIAIVSskgtchvfvlspfggdsgfqtlssqggdpylfpvlslpwwctssgiseqqcvlppppvtlsVVSRIKyssfgwlntvsnasassmgkvfvpsgAVAAVFHNSIAHSSQHVNSRTNSLEHLlvytpsgyvvqhellpsigmgpsddgsRIRAASLMCLqeddlqvrvepvqwwdvcrrsdwpereefiseatcdghgaveifqnksdcednygidfldindcivekstfkncsvksyershwYLSNAEvqmssgrlpiwqsskisffkmdspranthasgefeieKVSVHEVEIKrkellpvfdhfqcikpswnnsvfgvrEFGLLRLFCYLELFLDA
Flexible Loop (DISEMBL)
mkkgkgrnngllpnSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGedtntlapgqnRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLpdgssspvspnSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQeddlqvrvepvqwwdVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFLDA
Low Complexity Region (SEG)
MKKGKGRNNGLLPNSLKIISSCLKtvstnastvastvrsagasvaasisnasEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspggsslvARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCvlppppvtlsvvsRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREfgllrlfcylelflDA
Disordered region (IsUnstruct)
***************LKIISSCLKTVS***************************LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDT**************************CVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL**********************************************L*KYC****************VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM*******RIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK************EFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFL**
Disordered Region (DISOPRED)
*****************II****************************************TWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPV********RKLHPFLLVVAGEDTNT**************************NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA***********GPMAVGPRWLAYASNTLL***********L**S********GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL**********************DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC************NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP******************************SSGISEQQCVLP***************************************AVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHEL********************************EPVQWWDVCRRSD***********TCDGHGAVEIFQNKSDC*********************************WYLSNAEVQMSSGRLPIWQSSKISFFKMD************EIEKVSVHEVEIKRKELLPVFDHF***************EFGLLRLFCYLELFLDA
Disordered Region (DISEMBL)
MKKGKGRNNGLLPNSLKIISSCLKTV*******************ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN*************GSSLVARYAMEHSKQFAAGLSKTLSKYCQELL*********PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFLDA
Disordered Region (DISPRO)
**********LLPNSLKIISSCLKTVSTNA**********************EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR**LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG*****NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP*******************GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR***********SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG**********PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASA***GKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSI******************LQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDC****G************************ERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFLDA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVREFGLLRLFCYLELFLDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	787	2.2.26 [Sep-21-2011]
Q8CCN5	928	Breast carcinoma-amplifie	yes	no	0.459	0.390	0.272	6e-36
Q9H6U6	928	Breast carcinoma-amplifie	yes	no	0.432	0.366	0.271	6e-35
Q8SY41	1122	Breast carcinoma-amplifie	yes	no	0.343	0.240	0.307	3e-28
Q4P4N1	453	Autophagy-related protein	N/A	no	0.186	0.324	0.315	2e-10
Q75F47	537	Autophagy-related protein	yes	no	0.320	0.469	0.236	1e-06
Q7SG97	310	SVP1-like protein 2 OS=Ne	N/A	no	0.125	0.319	0.336	1e-06
P43601	500	Autophagy-related protein	yes	no	0.311	0.49	0.231	1e-06
A7A258	500	Autophagy-related protein	N/A	no	0.311	0.49	0.231	1e-06
Q6FM63	505	Autophagy-related protein	yes	no	0.320	0.499	0.221	2e-06
Q6FXC1	445	SVP1-like protein 2 OS=Ca	no	no	0.102	0.182	0.333	3e-06

>sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2

 Score =  153 bits (386), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 200/433 (46%), Gaps = 71/433 (16%)

Query: 54  DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQM 113
           DL D      F  L    +    ++++GY +G QV  +  +    EL S R GPV   ++
Sbjct: 69  DLNDTSRNLEFHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARI 128

Query: 114 QPFP-VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 172
            P P +    C+ F +  P L V     ++   P                     CV+  
Sbjct: 129 LPAPQLGAQKCDNFAEKRPLLGVCKSIGSSGTTPPY------------------CCVD-- 168

Query: 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231
                YS ++      ++F++ +  + C+ RI+ V L  +I  FD+ T   KF V + YP
Sbjct: 169 ----LYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYP 224

Query: 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS- 285
            P        G N+   P+A+G RWLAYA N L+  +  R        Q+ T + +S + 
Sbjct: 225 CP--------GPNM--NPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAK 274

Query: 286 TSPGGSSLVARYAMEHSKQFAAGLSK-TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344
           T   G ++V +   + +    +G+++  ++ +C     +   SP+ P  +  +      D
Sbjct: 275 TLKSGLTMVGKVVTQLTGTLPSGVTEDDVALHC-----NSRRSPLVPGIITVI------D 323

Query: 345 MDNAG---IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401
            +  G   ++V +D  +  I++ F AH  P+  + F+ SG LLVT    G++ ++F+I+ 
Sbjct: 324 TETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL- 382

Query: 402 SCMRSGSGNHKYDWNSSHV---HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
                      + W+SS     HLY LHRG T A +QDICFSH  +W+ + + +GT HVF
Sbjct: 383 ----------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVF 432

Query: 459 VLSPFGGDSGFQT 471
            ++P+GG    +T
Sbjct: 433 PINPYGGQPCVRT 445

Mus musculus (taxid: 10090)

>sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3

 Score =  149 bits (377), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 191/409 (46%), Gaps = 69/409 (16%)

Query: 77  VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFP-VKDDGCEGFRKLHPFLLV 135
           ++++GY +G QV  +  +    EL S R GP+   ++ P P      C+ F +  P L V
Sbjct: 92  LIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGV 151

Query: 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV 195
                ++  +P                     CV+       YS ++      ++F++ +
Sbjct: 152 CKSIGSSGTSPPYC------------------CVD------LYSLRTGEMVKSIQFKTPI 187

Query: 196 CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP 254
             + C+ RI+ V L  +I  FD+ T   KF V + YP P        G N+   P+A+G 
Sbjct: 188 YDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCP--------GPNMN--PIALGS 237

Query: 255 RWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS-TSPGGSSLVARYAMEHSKQFAAG 308
           RWLAYA N L+  +  R        Q+ T + +S + T   G ++V +   + +    +G
Sbjct: 238 RWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSG 297

Query: 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVVVKDFVTRAIISQF 365
           +++        +  +   SP+ P  +  +      D +  G   ++V +D  +  I++ F
Sbjct: 298 VTEDDVA----IHSNSRRSPLVPGIITVI------DTETVGEGQVLVSEDSDSDGIVAHF 347

Query: 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HL 422
            AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HL
Sbjct: 348 PAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL-----------THPWSSSQCAVHHL 396

Query: 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
           Y LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct: 397 YTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

Homo sapiens (taxid: 9606)

>sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 58/328 (17%)

Query: 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231
           +AV F S ++      ++F+++V  ++ +   V +    +I  FDA TLE++ ++ T YP
Sbjct: 229 SAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTCYP 288

Query: 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN-SGRLSPQNLTPSGVSPSTSPGG 290
            P        GIN    P+A+GPRWLAYA + LL S  SG        PS  +  T    
Sbjct: 289 SP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTA--TVLNA 336

Query: 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350
           +  +++   E  +Q AAGL+ T +                  S        G D   +G+
Sbjct: 337 AKSLSKGLREFGEQVAAGLTGTTAGSGASS-----------KSSSFDSASGGPDAKQSGV 385

Query: 351 VV-------VKDFVTRA----------------IISQFKAHTSPISALCFDPSGTLLVTA 387
           V        VKD+   +                I++ F AH+  + A+ FD SG LL+TA
Sbjct: 386 VTIIDVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTA 445

Query: 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKLHRGITSATIQDICFSHYSQWI 446
              G++ ++FR+ P         H    + + VH LY LHRG TSA +Q I FS  S+W 
Sbjct: 446 DRRGHDFHVFRVQP---------HPVGPSLAAVHHLYVLHRGDTSAKVQHIAFSLDSRWA 496

Query: 447 AIVSSKGTCHVFVLSPFGGDSGFQTLSS 474
           A+ + +GT HVF ++P+GG  G +T +S
Sbjct: 497 AVSTLRGTTHVFPITPYGGAMGVRTHTS 524

Drosophila melanogaster (taxid: 7227)

>sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG18 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 18/165 (10%)

Query: 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPIS 373
           S+ C    P   +SP SP S       A A+   AG V++ D ++ ++ +  +AH +PIS
Sbjct: 152 SENCFLAYPSPVASPTSPFSNSGASSSAEANT-TAGDVLIFDLLSLSVTNVIQAHKTPIS 210

Query: 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433
           AL  + +GTLL TAS  G  I +F I P+  +                L++  RG  +A 
Sbjct: 211 ALALNATGTLLATASDKGTVIRVFSI-PAAQK----------------LHQFRRGSYAAR 253

Query: 434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           I  + F+  S  +A+ S   T H+F LS   G       SS GG+
Sbjct: 254 IYSLNFNAVSTLLAVSSDTETVHIFKLSSGAGAGAKGRSSSNGGE 298

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 48/300 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +++  V+ +   + V L  QIY +D  ++   +++ T 
Sbjct: 72  SPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLLYTIETS 131

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSP-- 284
             P+             G +++ P     +LAY S   ++ NSG  S  N    G+S   
Sbjct: 132 SNPR-------------GLISMSPSLENNYLAYPSPPKVI-NSGIKSNANTNNIGISARS 177

Query: 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344
           S + GGS  + +     +    AG      K   E       + +SP      G    A 
Sbjct: 178 SIAEGGSEYLDKGTEPLTDSSKAGADLNSVKASTE-------TTISPGKEHSAGSGLNAT 230

Query: 345 MDNA----GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400
             +     G V+  +  T       +AH   I+AL     GTLL TAS  G  I +F + 
Sbjct: 231 SSSGTVKNGDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLATASEKGTIIRVFSV- 289

Query: 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +C +                +Y+  RG     I  + FS  ++++A  SS  T H+F L
Sbjct: 290 ETCTK----------------VYQFRRGTYPTRIYSLNFSDDNEFLAASSSNKTVHIFKL 333

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q7SG97|HSV2_NEUCR SVP1-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsv-2 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 20/119 (16%)

Query: 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421
           +S   AHTS + A+     G LL TAS  G  I ++    +C R                
Sbjct: 54  VSIITAHTSALRAMALSQDGELLATASEMGTIIRVY-ATSNCAR---------------- 96

Query: 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY 480
           LY+L RGI  A I  I FS   +++A  S K T HVF ++  GG    + ++S GG  Y
Sbjct: 97  LYELRRGIDKAIIFSIGFSPSGKYLACTSDKSTLHVFDVTRPGGT---RPITSNGGTAY 152

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +S+  V+ +   + V L  QIY +D  T+    ++ T 
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286
           P P+             G MA+ P     +L Y S   ++++  +    + T + ++ S 
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174

Query: 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346
                +   R   +      + L +  S + +    D +SS    +S+ K G        
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
               V+V +  T       +AH   I+A+     GTL+ TAS  G  I +F I       
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +G+           +Y+  RG  +  I  I FS  SQ++A+  S  T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +S+  V+ +   + V L  QIY +D  T+    ++ T 
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286
           P P+             G MA+ P     +L Y S   ++++  +    + T + ++ S 
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174

Query: 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346
                +   R   +      + L +  S + +    D +SS    +S+ K G        
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
               V+V +  T       +AH   I+A+     GTL+ TAS  G  I +F I       
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +G+           +Y+  RG  +  I  I FS  SQ++A+  S  T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|Q6FM63|ATG18_CANGA Autophagy-related protein 18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG18 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 46/298 (15%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F + +  V+ +   + V L  QIY +D   +    ++   
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTKILSVKMNRSRIVVVLKEQIYIYDINNMRLLHTIEIA 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290
           P P+  G  A+  N            LAY S                 P  +S   +P  
Sbjct: 131 PNPE--GLVALSCNTD-------TNLLAYPS----------------PPKVISSDINPNV 165

Query: 291 SSLVARYAMEHSKQFAAGLSKT--LSKYCQELLPDGSSSPVSPNSVWKVGRHAG-ADMD- 346
           ++     A   S++  A        +K+   L    +       + ++V ++   A+ D 
Sbjct: 166 NTNTINIARSKSEELIANSKDNNLQNKFGTTLEGQQNIDEDKAANGYQVDQNTDTAENDI 225

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
           N+G V++ D  T   +   +AH   I+AL F   G+L+ TAS  G  I +F         
Sbjct: 226 NSGDVIIYDMSTLQPLMVIEAHKGEIAALNFSFDGSLIATASEKGTIIRVF--------- 276

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464
                     SS   LY+  RG     I  + FS  ++++++  S  T H+F L+  G
Sbjct: 277 --------STSSGAKLYQFRRGTYPTKIYSLSFSQDNRFLSVTCSSKTVHIFKLTKTG 326

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6FXC1|HSV2_CANGA SVP1-like protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HSV2 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 21/102 (20%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH--VHL 422
            KAH +PI  +  +  GT++ TAS  G  I IF                   S+H  + L
Sbjct: 216 IKAHKAPIRNVRINNQGTMVATASRKGTLIRIF-------------------STHNGILL 256

Query: 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464
            +  RG+  A I D+CFS     +A+VS K T HVF ++P  
Sbjct: 257 KEFRRGLDRAEIYDMCFSPLGTRLAVVSDKQTLHVFQIAPMA 298

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	787
255567594	1016	breast carcinoma amplified sequence, put	0.974	0.754	0.734	0.0
225436857	988	PREDICTED: uncharacterized protein LOC10	0.952	0.759	0.728	0.0
296086668	951	unnamed protein product [Vitis vinifera]	0.952	0.788	0.728	0.0
356504886	979	PREDICTED: uncharacterized protein LOC10	0.959	0.771	0.688	0.0
147779793	1237	hypothetical protein VITISV_008540 [Viti	0.884	0.562	0.713	0.0
356570542	950	PREDICTED: uncharacterized protein LOC10	0.959	0.794	0.670	0.0
240253994	959	autophagy 18G-like protein [Arabidopsis	0.958	0.786	0.628	0.0
297843152	958	hypothetical protein ARALYDRAFT_333664 [	0.960	0.789	0.624	0.0
147845501	754	hypothetical protein VITISV_035392 [Viti	0.923	0.964	0.658	0.0
357133727	1015	PREDICTED: uncharacterized protein LOC10	0.939	0.728	0.609	0.0

>gi|255567594|ref|XP_002524776.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223535960|gb|EEF37619.1| breast carcinoma amplified sequence, putative [Ricinus communis]

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/782 (73%), Positives = 650/782 (83%), Gaps = 15/782 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK +NNG+LPNSL+IISSCLKTVSTNA+TVASTVRSA  +  A+  ++SED KDQV+
Sbjct: 1   MKKGKSKNNGILPNSLRIISSCLKTVSTNATTVASTVRSA-GASVAASISSSEDHKDQVS 59

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PSV K+VLLLGY NGFQVLDVEDASN+ ELVSKRDGPVSFLQMQPFP K 
Sbjct: 60  WAGFDRLELSPSVIKRVLLLGYHNGFQVLDVEDASNYRELVSKRDGPVSFLQMQPFPSKS 119

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG E FR  HP LLVVAG+DTN++  GQN  HLGGV R+G M+SQ  NC++SPT+VRFYS
Sbjct: 120 DGHERFRSSHPLLLVVAGDDTNSINVGQNPGHLGGVGREGNMESQPRNCISSPTSVRFYS 179

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SHCY HVLRFRS+V MVRCSPRI+AVGLATQIYC DALTLE+KFSVLTYPVPQLAGQG
Sbjct: 180 LRSHCYVHVLRFRSAVRMVRCSPRIIAVGLATQIYCIDALTLESKFSVLTYPVPQLAGQG 239

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
             GINVGYGPMAVGPRWLAYASN  L+SN+ RLS Q+LTPS GVSPSTSPGG+SLVARYA
Sbjct: 240 --GINVGYGPMAVGPRWLAYASNNPLVSNTTRLSAQSLTPSPGVSPSTSPGGTSLVARYA 297

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KT SKYCQELLPDGS+SPVSP+S WKVGR AG+DMD AG+V
Sbjct: 298 MESSKQLAAGIINLGDMGYKTFSKYCQELLPDGSNSPVSPSSGWKVGRLAGSDMDTAGMV 357

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           VVKDFV+R +ISQFKAHTSPISALCFDPSGTLLVTAS+YGNNINIFRIMPSC R G G  
Sbjct: 358 VVKDFVSRVVISQFKAHTSPISALCFDPSGTLLVTASIYGNNINIFRIMPSCSRGGLGVQ 417

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ+
Sbjct: 418 SYDWSSSHVHLYKLHRGMTSAMIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQS 477

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
           L+S G +P L+P+LSLPWW TSS +  QQ   PPPPV+LSVVSRIKYSSFGWLNTV NA+
Sbjct: 478 LNSMGVEPSLYPILSLPWWSTSSWMINQQPYPPPPPVSLSVVSRIKYSSFGWLNTVGNAT 537

Query: 532 ASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
            S+   KVFVPSGAVAAVFHNSI  S+QHVNSR N LEHLLVYTPSG+VVQHELLPSIG+
Sbjct: 538 GSAXSRKVFVPSGAVAAVFHNSICQSAQHVNSRANPLEHLLVYTPSGHVVQHELLPSIGL 597

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
              + GS+I+ AS + +QEDD++V+VEPVQWWDVCRRSDW EREE +  +T +G  AVEI
Sbjct: 598 ELGESGSKIQPASFVHIQEDDMKVKVEPVQWWDVCRRSDWSEREESVIGST-NGQDAVEI 656

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
              K   E+N+ + FLD N  + EK +  + S+K +E+SHWYLSNAEVQ+SS RLPIWQ 
Sbjct: 657 ITRKPSGENNFEMVFLDTNGDVNEKKSSISYSMKPHEKSHWYLSNAEVQISSVRLPIWQK 716

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNSVFGVR 770
           SKI F+ MDSPR N +  GEFEIEKV + EVE+KRKELLPVFDHF   K  WN+    V 
Sbjct: 717 SKICFYVMDSPRVN-YNDGEFEIEKVPIQEVELKRKELLPVFDHFHSFKSGWNDRGIAVA 775

Query: 771 EF 772
            +
Sbjct: 776 RY 777

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436857|ref|XP_002270856.1| PREDICTED: uncharacterized protein LOC100245938 [Vitis vinifera]

 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/780 (72%), Positives = 642/780 (82%), Gaps = 30/780 (3%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK RNNGLLPNSL+IISSCLKTVSTNAS+VASTVRSAG SVAASIS ASED KD+VT
Sbjct: 1   MKKGKARNNGLLPNSLRIISSCLKTVSTNASSVASTVRSAGVSVAASISAASEDHKDEVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQP P++ 
Sbjct: 61  WAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQPIPLES 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPTAVRFYS
Sbjct: 121 DGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPTAVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVPQL GQG
Sbjct: 181 LRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVPQLGGQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
            +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SSLVARYA
Sbjct: 241 TLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSSLVARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ DNAG+V
Sbjct: 301 MESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAETDNAGMV 355

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           V+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  SGSG  
Sbjct: 356 VIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTCSGSGCQ 415

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGGD+GFQT
Sbjct: 416 SYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGGDAGFQT 475

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWLNTVSNA 530
            +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWLNTVS A
Sbjct: 476 SNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWLNTVSIA 535

Query: 531 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
           +AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL PS+G 
Sbjct: 536 AASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHELFPSMGA 595

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
             SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE         +I
Sbjct: 596 ELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER----QKYAKI 651

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR+PIW  
Sbjct: 652 IVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGRIPIWHK 701

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNN-SVFGV 769
           SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+ S+ GV
Sbjct: 702 SKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWNDRSLAGV 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086668|emb|CBI32303.3| unnamed protein product [Vitis vinifera]

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/780 (72%), Positives = 642/780 (82%), Gaps = 30/780 (3%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK RNNGLLPNSL+IISSCLKTVSTNAS+VASTVRSAG SVAASIS ASED KD+VT
Sbjct: 1   MKKGKARNNGLLPNSLRIISSCLKTVSTNASSVASTVRSAGVSVAASISAASEDHKDEVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQP P++ 
Sbjct: 61  WAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQPIPLES 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPTAVRFYS
Sbjct: 121 DGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPTAVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVPQL GQG
Sbjct: 181 LRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVPQLGGQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
            +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SSLVARYA
Sbjct: 241 TLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSSLVARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ DNAG+V
Sbjct: 301 MESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAETDNAGMV 355

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           V+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  SGSG  
Sbjct: 356 VIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTCSGSGCQ 415

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGGD+GFQT
Sbjct: 416 SYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGGDAGFQT 475

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWLNTVSNA 530
            +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWLNTVS A
Sbjct: 476 SNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWLNTVSIA 535

Query: 531 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
           +AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL PS+G 
Sbjct: 536 AASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHELFPSMGA 595

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
             SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE         +I
Sbjct: 596 ELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER----QKYAKI 651

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR+PIW  
Sbjct: 652 IVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGRIPIWHK 701

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNN-SVFGV 769
           SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+ S+ GV
Sbjct: 702 SKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWNDRSLAGV 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504886|ref|XP_003521225.1| PREDICTED: uncharacterized protein LOC100785780 [Glycine max]

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/765 (68%), Positives = 606/765 (79%), Gaps = 10/765 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+NNGLLPNSL+IIS CLKTVSTNA+TVASTVRSAGASVAASIS++SED KDQVT
Sbjct: 1   MKKGKGKNNGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASVAASISSSSEDHKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD LE  P+  K+VLLLGY NGFQVLDVEDAS F ELVSKRDGPVSFLQMQPFPV  
Sbjct: 61  WAGFDTLELDPANLKRVLLLGYLNGFQVLDVEDASGFRELVSKRDGPVSFLQMQPFPVGC 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFRK HP LLVV+G+DT+     QN + L G+ RDG  ++Q GN VNS T VRFYS
Sbjct: 121 DGQEGFRKSHPLLLVVSGDDTSN--ANQNSTSLSGLGRDGNFETQPGNNVNSSTVVRFYS 178

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SHCY HVLRFRS+VCM+RCS RIVAVGLATQIYCFDA+TLENKFSVLTYPV Q AGQG
Sbjct: 179 LKSHCYVHVLRFRSTVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYPVSQFAGQG 238

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
             G+NVGYGPMAVGPRWLAYASN  L SN G LSPQN + S     ++   S  LVARYA
Sbjct: 239 TTGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNFSDSPGISPSTSPSSGSLVARYA 298

Query: 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358
           +E S+  AAG+ K    YCQELLPDGSSSP+  NS  KV R  G D DNAG+VV+KDFV+
Sbjct: 299 VESSRHLAAGIIK----YCQELLPDGSSSPIQSNSGVKVNRVTGIDADNAGMVVIKDFVS 354

Query: 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418
           R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS     SG    +WNSS
Sbjct: 355 RSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSGIPSSNWNSS 414

Query: 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           HVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GF+ +SSQG +
Sbjct: 415 HVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSQGEE 474

Query: 479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKV 538
           P+L PV SLPWW T + IS QQ + PP PV LSV SRIKYSSFGWLNTV N+SA+  GKV
Sbjct: 475 PFLLPVFSLPWWYTPASISYQQSLPPPAPVVLSVASRIKYSSFGWLNTVHNSSANVTGKV 534

Query: 539 FVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSR 598
           FVPSGA+AA+FHNS++HS Q VNS+   LEH+LVYTPSG+VVQHELL S+G+G +D+G R
Sbjct: 535 FVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLASVGLGTTDNGLR 594

Query: 599 IRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCE 658
            ++ SL+ +QED+ +V+VEP+QWWDVCRRS+WPER +     T D  G +E  Q K    
Sbjct: 595 NQSTSLLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDTCCN-TFDRQGGIERVQEKISYS 653

Query: 659 DNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKM 718
           D +G++FL   D   EK   ++ +   ++R HWYLSNAEVQ + GRLPIWQ SKI  + M
Sbjct: 654 DVHGLNFLGTRDRAGEK-MVRSSNENMHDRFHWYLSNAEVQRNFGRLPIWQKSKICCYSM 712

Query: 719 DSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 763
               A+  A+GEFEIEKV V+EVEIKRKELLPVFDHF  I+ S N
Sbjct: 713 SCAGASFSATGEFEIEKVPVNEVEIKRKELLPVFDHFHSIRSSGN 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779793|emb|CAN64435.1| hypothetical protein VITISV_008540 [Vitis vinifera]

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/726 (71%), Positives = 589/726 (81%), Gaps = 30/726 (4%)

Query: 55   LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQ 114
            L   VTWAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQ
Sbjct: 444  LHRSVTWAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQ 503

Query: 115  PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPT 173
            P P++ DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPT
Sbjct: 504  PIPLESDGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPT 563

Query: 174  AVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVP 233
            AVRFYS +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVP
Sbjct: 564  AVRFYSLRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVP 623

Query: 234  QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSS 292
            QL GQG +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SS
Sbjct: 624  QLGGQGTLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSS 683

Query: 293  LVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345
            LVARYAME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ 
Sbjct: 684  LVARYAMESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAET 738

Query: 346  DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405
            DNAG+VV+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  
Sbjct: 739  DNAGMVVIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTC 798

Query: 406  SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465
            SGSG   YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGG
Sbjct: 799  SGSGCQSYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGG 858

Query: 466  DSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWL 524
            D+GFQT +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWL
Sbjct: 859  DAGFQTSNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWL 918

Query: 525  NTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHEL 584
            NTVS A+AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL
Sbjct: 919  NTVSIAAASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHEL 978

Query: 585  LPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDG 644
             PS+G   SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE     
Sbjct: 979  FPSMGAELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER---- 1034

Query: 645  HGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR 704
                +I  +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR
Sbjct: 1035 QKYAKIIVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGR 1084

Query: 705  LPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNN 764
            +PIW  SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+
Sbjct: 1085 IPIWHKSKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWND 1144

Query: 765  -SVFGV 769
             S+ GV
Sbjct: 1145 RSLAGV 1150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570542|ref|XP_003553444.1| PREDICTED: uncharacterized protein LOC100818381 [Glycine max]

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/765 (67%), Positives = 594/765 (77%), Gaps = 10/765 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MK GKG+NNGLLPNSL+I+S CLKTVSTNA+TVASTVRSAGAS+AASIS++SED KDQVT
Sbjct: 1   MKTGKGKNNGLLPNSLRIVSLCLKTVSTNATTVASTVRSAGASLAASISSSSEDHKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD LE   S  K+VLLLGY NGFQVLDVEDAS F+ELVSKRDGPVSFLQMQP  V  
Sbjct: 61  WAGFDTLELDSSNLKRVLLLGYLNGFQVLDVEDASGFSELVSKRDGPVSFLQMQPLAVGC 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFRK HP LL V G+DT+ +      + L GV RDG +++Q+ N VNS T V+FYS
Sbjct: 121 DGQEGFRKSHPLLLAVCGDDTSKV--NHKSTSLSGVGRDGNVETQTRNNVNSSTVVQFYS 178

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y HVLRFRS+VCM+RCS RIVAVGLATQI+CFDA TLENK SVLTYPV QLAGQG
Sbjct: 179 LKSHSYVHVLRFRSTVCMIRCSSRIVAVGLATQIHCFDASTLENKLSVLTYPVTQLAGQG 238

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
             G+NVGYGPMA+G RWLAYASN+ L SN G LSPQN + S     ++   S  LVARYA
Sbjct: 239 TTGVNVGYGPMALGRRWLAYASNSPLPSNLGCLSPQNFSASPGISPSTSPSSGSLVARYA 298

Query: 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358
           ME S+  AAG+ K    YCQELLPDGSSSPVS NS  KV R  G D DNAG+VVV+DFV+
Sbjct: 299 MESSRHLAAGIIK----YCQELLPDGSSSPVSSNSGVKVDRVTGIDADNAGMVVVQDFVS 354

Query: 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418
           R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS     S     +WNSS
Sbjct: 355 RSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSATPSSNWNSS 414

Query: 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           HVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GFQ +SSQG +
Sbjct: 415 HVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFQIISSQGEE 474

Query: 479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKV 538
           P L PV+SLPWW T + I  Q  + PP P  LSV SRIKYSSFGWLNTV N+S +   KV
Sbjct: 475 PSLLPVVSLPWWYTPASIPYQPSLPPPAPAVLSVASRIKYSSFGWLNTVHNSSTNVTEKV 534

Query: 539 FVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSR 598
           FVPSGA+AA+FHNS++HS Q VNS+   LEH+LVYTPSG+VVQHELLPS+G+G +D G R
Sbjct: 535 FVPSGAIAAIFHNSLSHSQQPVNSKAKPLEHILVYTPSGHVVQHELLPSVGLGTTDSGLR 594

Query: 599 IRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCE 658
            ++ S++ +QED+ +V+VEP+QWWDVCRRS+WPER +    +T D  G +E  Q K    
Sbjct: 595 NQSTSVLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDSCC-STFDRQGGIEGVQEKISYS 653

Query: 659 DNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKM 718
           D +G+DF+   D   EK   K+ S    +R HWYLSNAEVQ + GRLPIWQ SKI F+ M
Sbjct: 654 DFHGLDFVGSRDEAGEK-MVKSSSENMQDRFHWYLSNAEVQGNFGRLPIWQKSKICFYSM 712

Query: 719 DSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 763
               A+   +GEFEIEKV  +EVEI+RKELLPVFDHF  I+ SWN
Sbjct: 713 SCAGASFSGTGEFEIEKVPANEVEIRRKELLPVFDHFHSIRSSWN 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240253994|ref|NP_171837.7| autophagy 18G-like protein [Arabidopsis thaliana] gi|27311609|gb|AAO00770.1| Unknown protein [Arabidopsis thaliana] gi|332189445|gb|AEE27566.1| autophagy 18G-like protein [Arabidopsis thaliana]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/768 (62%), Positives = 576/768 (75%), Gaps = 14/768 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+N+GLLPNS KIISSCLKTVS NA+ VAS+VRSA  +  A+  +A+ED KDQVT
Sbjct: 2   MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSA-GASVAASISAAEDDKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGF  LE G  V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct: 61  WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
              EGF   HP LLVVAG++TN    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct: 121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct: 181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
              +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ  T S     +S  G S  +ARYA
Sbjct: 241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPN++WKVG  +G+D +NAG+V
Sbjct: 301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMV 360

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
            VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct: 361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            Y+W SSHVHL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+ FQ 
Sbjct: 421 SYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
              +G +P   P  SLPWW T S  S QQ + PP  V LSVVSRIKYSSFGWLNTVSNA+
Sbjct: 481 C--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNAT 538

Query: 532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
            ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct: 539 TAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHELLPSVCTE 597

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
             ++G R++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++  +    +E  
Sbjct: 598 SPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETV 657

Query: 652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
            N     ++  +  LD+N    E    K+CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct: 658 SNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query: 712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIK 759
           KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K
Sbjct: 717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTK 764

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843152|ref|XP_002889457.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] gi|297335299|gb|EFH65716.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/770 (62%), Positives = 574/770 (74%), Gaps = 14/770 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+N+GLLPNS KIISSCLKTVS NA+ VAS+VRSA  +  A+  +A+ED KDQVT
Sbjct: 2   MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSA-GASVAASISAAEDDKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGF  LE    V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct: 61  WAGFGILELSQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
              EGF   HP LLVVAG+DT+    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct: 121 GDHEGFGNSHPLLLVVAGDDTSGTGLGHSFSQNGSLARDGKSDSKAGDAINYPTTVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct: 181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCCDALTLENKFSVLTYPVPQPVRQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
            + +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ  T S     +S  G S ++ARYA
Sbjct: 241 TIRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSIMARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPNS+WKVG   G+D +NAG+V
Sbjct: 301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNSIWKVGGVTGSDAENAGMV 360

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
            VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct: 361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            Y+W SSH+HL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+  Q 
Sbjct: 421 SYEWESSHMHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAIQP 480

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
              +G +P   P  SL WW T S  + QQ +LPPP V LSVVSRIKYSSFGWLNTVSNA+
Sbjct: 481 C--EGEEPTRLPASSLSWWFTQSLSNNQQSLLPPPAVALSVVSRIKYSSFGWLNTVSNAA 538

Query: 532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
            ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct: 539 TAATGKVFVPSGAVAAVFHKSVTHDHQ-LNSRTNALEHVLVYTPSGHVVQHELLPSVCTE 597

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
             ++GS ++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE +  +  +    +E  
Sbjct: 598 SPENGSTVQRTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPRSITEKQYDLETV 657

Query: 652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
            N     +   +  LDIN    E     +CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct: 658 SNNLTSHEVACLS-LDINSHFGEDKYLISCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query: 712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPS 761
           KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K +
Sbjct: 717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKAT 766

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845501|emb|CAN80611.1| hypothetical protein VITISV_035392 [Vitis vinifera]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/778 (65%), Positives = 587/778 (75%), Gaps = 51/778 (6%)

Query: 5   KGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGF 64
           K +NNG +PNSL+ ISSC+KT ST        VRSAGASVAASIS   ++ KDQV  A F
Sbjct: 7   KPKNNGFIPNSLRFISSCIKTASTG-------VRSAGASVAASISGDPDERKDQVLCACF 59

Query: 65  DRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124
           DRLE GPS FK VLLLGY NGFQVLDVED+SN +ELVS+RD PV+FLQMQP P K +G E
Sbjct: 60  DRLELGPSNFKHVLLLGYSNGFQVLDVEDSSNVSELVSRRDDPVTFLQMQPIPAKSEGRE 119

Query: 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC 184
           GFR  HP LLVVAG++T  L P Q+    G VRDG ++ Q+GN VNSPTAVRFYS +SH 
Sbjct: 120 GFRASHPLLLVVAGDETKGLGPIQSVRD-GPVRDGYIEPQAGNVVNSPTAVRFYSLRSHN 178

Query: 185 YEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244
           Y HVLRFRS+V MVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQL GQG  G+N
Sbjct: 179 YVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGLAGVN 238

Query: 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT-PSGVSPSTSPGGSSLVARYAMEHSK 303
           +GYGPM VG RWLAYASN  LLSN GRLSPQ+LT   GVSPSTSP   SLVARYAME SK
Sbjct: 239 IGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSGSLVARYAMESSK 298

Query: 304 QFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA--GADMDNAGIVVVK 354
           Q AAG+        KTLSKYCQEL PDGSSSPVS +S WKVGR A    + D+AG+VVVK
Sbjct: 299 QLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHSNETDSAGMVVVK 358

Query: 355 DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414
           DFV+RA++SQF+AHTSPISALCFDPSGT+LVTAS++GNNINIFRIMPSC ++ SG   YD
Sbjct: 359 DFVSRAVVSQFRAHTSPISALCFDPSGTVLVTASIHGNNINIFRIMPSCSQNASG---YD 415

Query: 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474
           WN+SHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCH+FVLSPFGG+SG Q  +S
Sbjct: 416 WNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESGLQIQNS 475

Query: 475 QGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPP--VTLSVVSRIKYSSFGWLNTVSNASA 532
                 L PVLSLPWW TSS +  QQ   PPPP  +TLSVVSRIK S  GWLN+VSN ++
Sbjct: 476 HVRSS-LLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIKNS--GWLNSVSNVAS 532

Query: 533 SSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG- 591
           S+ GKV VPSGAVAAVFH+S+ H     + + N+LEHLLVYTPSG+V+Q+ELLPS+G G 
Sbjct: 533 SAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGHVIQYELLPSMGGGE 592

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVE-I 650
           PS+  S   + SL+ +Q+++L+V+VEPVQWWDVCR   WPEREE I+      HG  E +
Sbjct: 593 PSETASGTGSGSLVQVQDEELRVKVEPVQWWDVCRGMAWPEREECIAGIM---HGRQETV 649

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             + SDCEDN                T +   VK +ER HWYLSNAEVQ+ SGR+PIWQ 
Sbjct: 650 VMDTSDCEDN---------------DTGEMDLVKPHERLHWYLSNAEVQIRSGRIPIWQK 694

Query: 711 SKISFFKMD---SPRAN--THASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN 763
           SKI FF MD   S   N      GE EIEK  V EVEIKRK+LLPVFDHF  I+  W+
Sbjct: 695 SKIYFFTMDPLVSDECNFTKDTGGEIEIEKFPVQEVEIKRKDLLPVFDHFHRIQSDWS 752

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357133727|ref|XP_003568475.1| PREDICTED: uncharacterized protein LOC100842038 [Brachypodium distachyon]

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/778 (60%), Positives = 574/778 (73%), Gaps = 39/778 (5%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MK+GKG  NGLLP+SL+IISSCLKTVS+NA +VASTVRSAGASVAASI+  +ED KDQV 
Sbjct: 1   MKRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD+LE  PS FK VLL+GY NGFQVLDVEDA+N  ELVSKRDGPV+FLQMQP P+  
Sbjct: 61  WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPLYS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF 180
           +  EGFR  HP LLVVAG++TN L   Q       +RD   + Q+GNC+++PT VRFYS 
Sbjct: 121 ESTEGFRASHPMLLVVAGDETNGLGMVQGGRLSALIRDTNSEPQTGNCISTPTVVRFYSL 180

Query: 181 QSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240
           +SH Y HVLRFRS+V +VRCSPRIVAV LA QIYCFDA+TLENKFSVL+YP+     QGA
Sbjct: 181 KSHTYVHVLRFRSAVYIVRCSPRIVAVALAAQIYCFDAVTLENKFSVLSYPL-----QGA 235

Query: 241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYAM 299
            G+N+GYGPM+VGPRWLAYASN  +L ++GRLSPQNLTPS GVSPSTSP   SLVARYAM
Sbjct: 236 PGVNIGYGPMSVGPRWLAYASNGPVLPSTGRLSPQNLTPSPGVSPSTSPSNGSLVARYAM 295

Query: 300 EHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVS----------PNSVWKVGRHAG 342
           E SKQ AAG+        KTLSKYCQELLPDGS+SP+S          P+SV  +     
Sbjct: 296 ESSKQLAAGIINLGDMGYKTLSKYCQELLPDGSNSPLSSSPGRRSVKLPSSVHPL----- 350

Query: 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402
            + DN G+V++KD  ++ +ISQF+AHTSPISALCFDPSGTLLVTASV+G+NIN+FRIMP+
Sbjct: 351 -EADNIGMVIIKDVTSKVVISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPT 409

Query: 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462
           C+ +GSG+ +YDW +SHVHLYKL+RG+TSA IQDI FSH+SQWI+IVS++GTCH+F LSP
Sbjct: 410 CIANGSGSKRYDWTASHVHLYKLYRGMTSAVIQDISFSHFSQWISIVSARGTCHIFTLSP 469

Query: 463 FGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG 522
           FGGDS  Q  +S    P L P  S PWW   S + EQQ    P  VT SVVSRIK SS G
Sbjct: 470 FGGDSSLQPQNSHSDGPPLAPCQSRPWWSKPSFLMEQQLHPVPSTVTNSVVSRIKNSSSG 529

Query: 523 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 582
           WLNTVSN +AS+ GK+ VPSGA+ A+F+NSI   S  V S+ N+LEHLLVY+PSG+V+QH
Sbjct: 530 WLNTVSNVAASASGKLSVPSGAITAIFYNSIFQGSLPVPSKANALEHLLVYSPSGHVIQH 589

Query: 583 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 642
           EL+PS G   SD    +   +   LQ+D+L V  EPVQWWDVCRR++WPER++ I+  T 
Sbjct: 590 ELMPSSGSESSDSSPTVGPGAQSQLQDDELHVTAEPVQWWDVCRRTNWPERDQDIANVTF 649

Query: 643 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 702
           D      +  + SDCED+   D    ND I  K       ++  ERS WYLSNAEVQ+SS
Sbjct: 650 DNQRNSMMAVDTSDCEDSEHSDVTPSNDGISRKE-----DMRVRERSSWYLSNAEVQISS 704

Query: 703 GRLPIWQSSKISFFKMDSP-----RANTHASGEFEIEKVSVHEVEIKRKELLPVFDHF 755
            R+PIW+ SKI F+ +D P     +  +   GE EIEK S+HEVE+KR+ELLP F  F
Sbjct: 705 SRIPIWEKSKICFYVIDHPATELVKTGSVNGGEIEIEKSSLHEVELKRRELLPAFKQF 762

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	787
TAIR|locus:2020853	959	ATG18G "AT1G03380" [Arabidopsi	0.958	0.786	0.592	6.7e-239
TAIR|locus:2199512	927	ATG18H "AT1G54710" [Arabidopsi	0.803	0.681	0.539	1.3e-193
TAIR|locus:2157523	763	G18F "AT5G54730" [Arabidopsis	0.353	0.364	0.420	2.6e-69
ZFIN|ZDB-GENE-040426-1257	910	bcas3 "breast carcinoma amplif	0.261	0.226	0.322	2.1e-26
UNIPROTKB|F1P1V9	803	BCAS3 "Uncharacterized protein	0.265	0.260	0.298	9.3e-24
FB|FBgn0262684	1122	CG43154 [Drosophila melanogast	0.424	0.297	0.288	1.4e-24
UNIPROTKB|F1S209	820	BCAS3 "Uncharacterized protein	0.268	0.257	0.283	3.5e-23
MGI|MGI:2385848	928	Bcas3 "breast carcinoma amplif	0.265	0.225	0.285	1.7e-22
UNIPROTKB|Q9H6U6	928	BCAS3 "Breast carcinoma-amplif	0.265	0.225	0.280	2.8e-22
RGD|1560788	803	Bcas3 "breast carcinoma amplif	0.265	0.260	0.280	3e-22

TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)]

 Score = 2303 (815.8 bits), Expect = 6.7e-239, P = 6.7e-239
 Identities = 455/768 (59%), Positives = 540/768 (70%)

Query:     1 MKKGKGRNNGLLPNSLKIISSCLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKDQVT 60
             MKKGKG+N+GLLPNS KIISSCLK                            +D KDQVT
Sbjct:     2 MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISAAEDD-KDQVT 60

Query:    61 WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
             WAGF  LE G  V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct:    61 WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query:   121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
                EGF   HP LLVVAG++TN    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct:   121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180

Query:   180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
              +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct:   181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240

Query:   240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXX-XXXXXXXXXXARYA 298
                +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ                    ARYA
Sbjct:   241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300

Query:   299 MEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
             ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPN++WKVG  +G+D +NAG+V
Sbjct:   301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMV 360

Query:   352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
              VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct:   361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query:   412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              Y+W SSHVHL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+ FQ 
Sbjct:   421 SYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480

Query:   472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGWLNTVSNAS 531
                +G +P   P  SLPWW T S  S QQ              RIKYSSFGWLNTVSNA+
Sbjct:   481 C--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNAT 538

Query:   532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
              ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct:   539 TAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHELLPSVCTE 597

Query:   592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
               ++G R++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++  +    +E  
Sbjct:   598 SPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETV 657

Query:   652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
              N     ++  +  LD+N    E    K+CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct:   658 SNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query:   712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIK 759
             KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K
Sbjct:   717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTK 764

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1687 (598.9 bits), Expect = 1.3e-193, Sum P(2) = 1.3e-193
 Identities = 360/667 (53%), Positives = 438/667 (65%)

Query:     3 KGKGRNNGLLPNSLKIISSCLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKDQVTWA 62
             K  G  NG LPNSLK IS+C++                             +LKDQV W+
Sbjct:    20 KNNG-TNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSDS-------HELKDQVLWS 71

Query:    63 GFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG 122
              FDRL    S FK VLLLGY NGFQVLD++D+++  E VS+RD PV+FLQMQP P K DG
Sbjct:    72 SFDRLHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFLQMQPLPAKCDG 131

Query:   123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS 182
              EGFR  HP LL VA E   +     +R   G VR+G  D  +     SPT VRFYS +S
Sbjct:   132 VEGFRSSHPILLAVADEAKGSGPIVTSRD--GSVRNGYEDPLA----LSPTVVRFYSLRS 185

Query:   183 HCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 242
             H Y HVLRFRS+V MVRCSPRIVAVGL +QIYCFDALTLENKFSVL+YPVPQL  QG  G
Sbjct:   186 HNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPVPQLGNQGISG 245

Query:   243 INVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXXXXXXXXXXXXARYAMEHS 302
             +NVGYGPMAVG RWLAYASN+ L S+ GRLSPQN                  ARYAME S
Sbjct:   246 VNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGNLVARYAMESS 305

Query:   303 KQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGR---HAGADMDNAGIVV 352
             K  AAGL        KT+SKYCQ+L  DG    +S +   KVGR   H+ A+ D  G V+
Sbjct:   306 KHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHS-AESDVVGTVI 364

Query:   353 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412
             VKDF +RAII+QF+AHTSPISALCFDPSGTLLVTAS++GNNIN+FRIMP+  ++G G   
Sbjct:   365 VKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPTPTKNGPGAQS 424

Query:   413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472
             YDW+SSHV LYKLHRG+TSA IQDICFS YSQWIAIVSSK TCH++VLSPFGG++  +  
Sbjct:   425 YDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSPFGGENVLEIR 484

Query:   473 SSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGWLNTVSNASA 532
             +SQ   P L P LSLPWW + S ++                 RIK ++F       +A++
Sbjct:   485 NSQFDGPTLAPTLSLPWWSSPSFMTTHFSYPPPASVTLSVVSRIKCNNF------FHAAS 538

Query:   533 SSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGP 592
             S +GK   PSG +AAVFH S+   SQ   S + +L++LLVYTPSG+VVQ++L+PS+G   
Sbjct:   539 SVVGKPTFPSGCLAAVFHQSVPQESQ---SSSPALDYLLVYTPSGHVVQYKLIPSLGGDQ 595

Query:   593 SDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQ 652
             ++  +R  A S +   E++L+V+VEPVQ WDVCRR+DWPEREE I   T  G    E+  
Sbjct:   596 AESNTRNGATSGLT-SEEELRVKVEPVQCWDVCRRADWPEREENICGLTYGGRKNAELTV 654

Query:   653 NKSDCED 659
             + SD ED
Sbjct:   655 DTSDSED 661

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0042594 "response to starvation" evidence=IEP

GO:0007033 "vacuole organization" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 130/309 (42%), Positives = 185/309 (59%)

Query:   162 DSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTL 221
             D+     V +PT V  YS +S  Y H L+FR+++  VRC  RIVAV  A QI CFDA TL
Sbjct:   150 DNPGSETVATPTNVYVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATL 209

Query:   222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXX 281
             E  + ++T  +      G++G  VGYGP+AVGPRW+AY+ + +  S+S   + +      
Sbjct:   210 EMDYRIVTNSIVC----GSLG--VGYGPLAVGPRWIAYSGSRIATSSSAIFTSE------ 257

Query:   282 XXXXXXXXXXXXXARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSV 334
                          A++A + SKQ A+G++       ++L+KYC E+LP+    P  P   
Sbjct:   258 --IVSLSTSSPSVAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPN----PYIPGLK 311

Query:   335 W-KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393
                VG    AD ++ G+V+VKD   +++I+QFKAH SPISALCFD SG LLVTAS+ G+N
Sbjct:   312 GIGVGNEKVADAESIGMVIVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHN 371

Query:   394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453
             IN+FRIMP+   S +        ++  HL++L RG T+A IQDICFS  S  I + SS+G
Sbjct:   372 INVFRIMPTISTSRAVK-----TTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRG 426

Query:   454 TCHVFVLSP 462
             T H+F ++P
Sbjct:   427 TSHLFEINP 435

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
 Identities = 72/223 (32%), Positives = 106/223 (47%)

Query:   247 YGPMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQ 304
             + P+A+G RWLAYA N L+  +  R      N                       +   Q
Sbjct:   226 FNPIALGSRWLAYAENKLIRCHQSRGGACGDNAQSYTATVISAAKTLKTGLTMVGKVVTQ 285

Query:   305 FAAGLSKTLSKYCQELLPDGSS-SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363
              A  L   +    +     G+  SP  P  V  +  H    +    ++V +D     +I+
Sbjct:   286 LAGTLPSGVPDE-EGTAHSGTRRSPHQPGVVTIIDTHT---VGEGQVLVSEDSDGEGLIA 341

Query:   364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-L 422
              F AH  PIS + F+PSG LLVTA   G++ ++F+I+          H +  + S VH L
Sbjct:   342 HFPAHDKPISCMAFNPSGMLLVTADTLGHDFHVFQIL---------THPWASSQSAVHHL 392

Query:   423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465
             Y LHRG T A +QDICFSH  +W+ I + +GT HVF ++P+GG
Sbjct:   393 YTLHRGETEAKVQDICFSHDCRWVVISTLRGTSHVFPINPYGG 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 267 (99.0 bits), Expect = 9.3e-24, Sum P(3) = 9.3e-24
 Identities = 68/228 (29%), Positives = 108/228 (47%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTIKTGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364
               L    ++  +E+L   +   SP+ P  +  +     A+     ++V +D  +  I++ 
Sbjct:   292 GTLPSGATE--EEILAHSNVRRSPLVPGVITIIDTETVAE---GQVLVSEDSDSAGIVAH 346

Query:   365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LY 423
             F AH  PI  + F+PSG LLVT    G++ ++F+I+          H +  + S VH LY
Sbjct:   347 FPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDI FSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDISFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

FB|FBgn0262684 CG43154 [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 110/381 (28%), Positives = 175/381 (45%)

Query:   120 DDGCEGFRKLHPFLLVVAGEDT--NTLAPGQNRSHLGGVRDGM------MDSQSGNCVNS 171
             D+  + F +  P +  V G     + L  G +   LGG   G+      +   SG  V++
Sbjct:   165 DEPVDSFAEKRPLVAFVDGGSAAASGLLAGSSGLGLGGGGGGVTTVGGSVGGVSGIGVSA 224

Query:   172 P---TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVL 228
                 +AV F S ++      ++F+++V  ++ +   V +    +I  FDA TLE++ ++ 
Sbjct:   225 SAQFSAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTIT 284

Query:   229 T-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS--NSGRLSPQNXXXXXXXXX 285
             T YP P        GIN    P+A+GPRWLAYA + LL S  + G    +          
Sbjct:   285 TCYPSP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTATVL 334

Query:   286 XXXXXXXXXARYAMEHSKQFAAGLSKTLS----KYCQELLPDGSSSPVSPNS--VWKVG- 338
                       R   E  +Q AAGL+ T +              S  P +  S  V  +  
Sbjct:   335 NAAKSLSKGLR---EFGEQVAAGLTGTTAGSGASSKSSSFDSASGGPDAKQSGVVTIIDV 391

Query:   339 RHAGADMD-NAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393
             +H   D    +G  +     ++     I++ F AH+  + A+ FD SG LL+TA   G++
Sbjct:   392 KHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTADRRGHD 451

Query:   394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453
              ++FR+ P  +            + H HLY LHRG TSA +Q I FS  S+W A+ + +G
Sbjct:   452 FHVFRVQPHPVGPSLA-------AVH-HLYVLHRGDTSAKVQHIAFSLDSRWAAVSTLRG 503

Query:   454 TCHVFVLSPFGGDSGFQTLSS 474
             T HVF ++P+GG  G +T +S
Sbjct:   504 TTHVFPITPYGGAMGVRTHTS 524

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
 Identities = 64/226 (28%), Positives = 105/226 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   228 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKTGLTMVGKVVTQLT 287

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   288 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 344

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKL 425
             AH  P+  + F+ SG LLVT    G++ ++F+I+          H +  + S VH LY L
Sbjct:   345 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLYTL 395

Query:   426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
             HRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   396 HRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 441

GO:0071944 "cell periphery" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)]

 Score = 264 (98.0 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
 Identities = 65/228 (28%), Positives = 105/228 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    L  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTEDDVALHCNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
 Identities = 64/228 (28%), Positives = 105/228 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
 Identities = 64/228 (28%), Positives = 104/228 (45%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   ++     +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTDDDIAIHCNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0071944 "cell periphery" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	787
pfam12490	245	pfam12490, BCAS3, Breast carcinoma amplified seque	3e-87
smart00320	40	smart00320, WD40, WD40 repeats	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3

 Score =  275 bits (706), Expect = 3e-87
 Identities = 113/253 (44%), Positives = 149/253 (58%), Gaps = 15/253 (5%)

Query: 505 PPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT 564
           PPPVTLSVVSRIK  + GWL TV+ A++S+ GK  V SGAVA+VFHN    +S+  +   
Sbjct: 1   PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60

Query: 565 -NSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWD 623
            NS +HLLV++PSG+++Q+ L PS+G G S +  R    S   + E +L++ VEPVQ WD
Sbjct: 61  SNSKDHLLVFSPSGHLIQYLLRPSVG-GDSGEIPRNGVPSESQIDETELRLTVEPVQQWD 119

Query: 624 VCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSV 683
           VCRRS+WPEREE ++    +     +             +    I+D  V K      S 
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHP--ISDSAVGK-----EST 172

Query: 684 KSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRANT-----HASGEFEIEKVS 737
            S E+ H YLSNAEVQ  SG   P+WQ  K SF+ M SP           SGE EIEK+ 
Sbjct: 173 SSEEKDHLYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLP 232

Query: 738 VHEVEIKRKELLP 750
             EVEI+RK+L+P
Sbjct: 233 TREVEIRRKDLVP 245

This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 397
           +  ++   K HT P++++ F P G  L + S     I ++
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGS-DDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 20/97 (20%)

Query: 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421
               K HT  ++ + F P G LL T S     I ++ +                    + 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDL---------------ETGELLR 45

Query: 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
             K H    +  ++D+  S    ++A  SS  T  ++
Sbjct: 46  TLKGH----TGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 361 IISQFKAHTSPISALCFDPSGTLLVTAS 388
           ++   K HT P++++ F P G LL + S
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGS 30

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	787
KOG2109	788	consensus WD40 repeat protein [General function pr	100.0
PF12490	251	BCAS3: Breast carcinoma amplified sequence 3 ; Int	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.91
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.91
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.87
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0286	343	consensus G-protein beta subunit [General function	99.82
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.81
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.8
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.8
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.79
PLN00181	793	protein SPA1-RELATED; Provisional	99.79
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.79
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.79
KOG0266	456	consensus WD40 repeat-containing protein [General	99.78
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.78
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.77
PLN00181	793	protein SPA1-RELATED; Provisional	99.77
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.77
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.76
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.76
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.75
KOG0266	456	consensus WD40 repeat-containing protein [General	99.75
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.75
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.73
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.73
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.72
KOG0286	343	consensus G-protein beta subunit [General function	99.72
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.71
PTZ00421	493	coronin; Provisional	99.71
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.71
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.71
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.71
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.7
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.68
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.68
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.67
KOG0296	399	consensus Angio-associated migratory cell protein	99.67
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.67
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.67
PTZ00420	568	coronin; Provisional	99.66
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.66
KOG0643	327	consensus Translation initiation factor 3, subunit	99.66
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.65
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.65
PTZ00421	493	coronin; Provisional	99.65
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.64
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.64
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.63
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.63
PTZ00420	568	coronin; Provisional	99.63
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.63
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.61
KOG0645	312	consensus WD40 repeat protein [General function pr	99.61
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.59
KOG0645	312	consensus WD40 repeat protein [General function pr	99.59
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.59
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.58
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.58
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.57
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.57
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.56
KOG0643	327	consensus Translation initiation factor 3, subunit	99.56
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.55
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.55
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.54
KOG1539	910	consensus WD repeat protein [General function pred	99.53
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.53
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.53
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.53
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.52
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.52
KOG1539	910	consensus WD repeat protein [General function pred	99.52
KOG2055	514	consensus WD40 repeat protein [General function pr	99.51
KOG0289	506	consensus mRNA splicing factor [General function p	99.51
KOG2096	420	consensus WD40 repeat protein [General function pr	99.5
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.5
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.5
KOG1274	933	consensus WD40 repeat protein [General function pr	99.5
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.48
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.47
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.47
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.47
KOG0641	350	consensus WD40 repeat protein [General function pr	99.46
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.44
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.43
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.42
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.41
KOG0267	825	consensus Microtubule severing protein katanin p80	99.41
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.4
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.4
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.39
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.39
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.39
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.38
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.38
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.37
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.37
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.36
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.36
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.34
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.34
KOG0639	705	consensus Transducin-like enhancer of split protei	99.34
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.33
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.33
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.32
KOG0641	350	consensus WD40 repeat protein [General function pr	99.31
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.3
KOG0289	506	consensus mRNA splicing factor [General function p	99.3
KOG1273	405	consensus WD40 repeat protein [General function pr	99.3
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.3
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.29
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.29
KOG0267	825	consensus Microtubule severing protein katanin p80	99.29
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.28
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.27
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.27
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.27
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.26
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.25
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.24
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.24
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.23
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.23
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.21
KOG0296	399	consensus Angio-associated migratory cell protein	99.21
KOG1274	933	consensus WD40 repeat protein [General function pr	99.2
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.2
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.19
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.19
KOG2096	420	consensus WD40 repeat protein [General function pr	99.18
KOG4328	498	consensus WD40 protein [Function unknown]	99.18
KOG0639	705	consensus Transducin-like enhancer of split protei	99.15
PRK11028	330	6-phosphogluconolactonase; Provisional	99.15
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.12
KOG2055	514	consensus WD40 repeat protein [General function pr	99.12
KOG2048	691	consensus WD40 repeat protein [General function pr	99.12
KOG0646	476	consensus WD40 repeat protein [General function pr	99.07
PRK01742	429	tolB translocation protein TolB; Provisional	99.07
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.07
KOG0646	476	consensus WD40 repeat protein [General function pr	99.07
KOG4328	498	consensus WD40 protein [Function unknown]	99.06
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.06
COG2319	466	FOG: WD40 repeat [General function prediction only	99.06
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.03
KOG2048	691	consensus WD40 repeat protein [General function pr	99.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.98
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.97
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.95
PRK03629	429	tolB translocation protein TolB; Provisional	98.93
PRK05137	435	tolB translocation protein TolB; Provisional	98.93
KOG1188	376	consensus WD40 repeat protein [General function pr	98.93
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.87
KOG2109	788	consensus WD40 repeat protein [General function pr	98.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.83
COG2319	466	FOG: WD40 repeat [General function prediction only	98.83
KOG1273	405	consensus WD40 repeat protein [General function pr	98.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.79
PRK02889	427	tolB translocation protein TolB; Provisional	98.74
KOG1188	376	consensus WD40 repeat protein [General function pr	98.72
PRK04922	433	tolB translocation protein TolB; Provisional	98.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.69
KOG1963	792	consensus WD40 repeat protein [General function pr	98.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.65
PRK11028	330	6-phosphogluconolactonase; Provisional	98.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.64
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.61
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.6
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.58
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.57
PRK01742	429	tolB translocation protein TolB; Provisional	98.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.56
PRK00178	430	tolB translocation protein TolB; Provisional	98.51
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.49
KOG1963	792	consensus WD40 repeat protein [General function pr	98.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.48
PRK05137	435	tolB translocation protein TolB; Provisional	98.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.48
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.47
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.43
PRK04922	433	tolB translocation protein TolB; Provisional	98.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.41
PRK03629	429	tolB translocation protein TolB; Provisional	98.41
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.35
PRK02889	427	tolB translocation protein TolB; Provisional	98.34
PRK04792	448	tolB translocation protein TolB; Provisional	98.34
KOG2139	445	consensus WD40 repeat protein [General function pr	98.33
KOG0649	325	consensus WD40 repeat protein [General function pr	98.3
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.29
KOG0649	325	consensus WD40 repeat protein [General function pr	98.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.21
PRK01029	428	tolB translocation protein TolB; Provisional	98.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.18
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.17
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.14
KOG1310	758	consensus WD40 repeat protein [General function pr	98.12
PRK04792	448	tolB translocation protein TolB; Provisional	98.11
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.06
KOG1310	758	consensus WD40 repeat protein [General function pr	98.05
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.03
PRK00178	430	tolB translocation protein TolB; Provisional	98.02
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.01
KOG4227	609	consensus WD40 repeat protein [General function pr	98.01
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.99
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.99
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.94
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.94
KOG2315	566	consensus Predicted translation initiation factor	97.93
PRK04043	419	tolB translocation protein TolB; Provisional	97.88
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.84
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.83
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.83
KOG2321	703	consensus WD40 repeat protein [General function pr	97.83
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.82
KOG2139	445	consensus WD40 repeat protein [General function pr	97.81
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.8
PRK01029	428	tolB translocation protein TolB; Provisional	97.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.76
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.6
KOG1334	559	consensus WD40 repeat protein [General function pr	97.58
KOG4547	541	consensus WD40 repeat-containing protein [General	97.58
COG4946	668	Uncharacterized protein related to the periplasmic	97.55
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.5
KOG2321	703	consensus WD40 repeat protein [General function pr	97.48
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.45
KOG2315	566	consensus Predicted translation initiation factor	97.44
KOG4547	541	consensus WD40 repeat-containing protein [General	97.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.35
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.28
KOG2314	698	consensus Translation initiation factor 3, subunit	97.23
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.13
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.09
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.05
COG4946	668	Uncharacterized protein related to the periplasmic	97.02
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.01
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	96.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.95
PRK04043	419	tolB translocation protein TolB; Provisional	96.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.9
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.83
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.83
KOG4227	609	consensus WD40 repeat protein [General function pr	96.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.51
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.4
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.24
KOG1334	559	consensus WD40 repeat protein [General function pr	96.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.14
KOG4415	247	consensus Uncharacterized conserved protein [Funct	96.09
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.08
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	95.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.49
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.29
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.21
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	94.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	94.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.28
KOG2314	698	consensus Translation initiation factor 3, subunit	94.18
KOG2695	425	consensus WD40 repeat protein [General function pr	93.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	93.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.33
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.0
KOG3621	726	consensus WD40 repeat-containing protein [General	92.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.39
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.92
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	91.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	90.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	90.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.86
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	90.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	90.43
PRK02888	635	nitrous-oxide reductase; Validated	90.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.61
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	89.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.23
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	89.2
KOG2695	425	consensus WD40 repeat protein [General function pr	89.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	88.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	87.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	87.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	87.14
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	86.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	85.47
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	84.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	84.48
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	84.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.1
KOG2395	644	consensus Protein involved in vacuole import and d	82.77
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	82.5
PRK02888	635	nitrous-oxide reductase; Validated	81.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	81.12
PRK13616	591	lipoprotein LpqB; Provisional	81.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	80.68

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-58  Score=514.02  Aligned_cols=630  Identities=30%  Similarity=0.356  Sum_probs=472.4

Q ss_pred             CCchhhhhhceeeeeccCCcceeeehhhcccccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 003907           12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV   91 (787)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv   91 (787)
                      +|+|||+||.|+|+.|+|+.+++       .|++++.+.+.++++|||+|++||+   .+...++||++++.+||||||.
T Consensus         1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~   70 (788)
T KOG2109|consen    1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE   70 (788)
T ss_pred             CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence            59999999999999998877766       4567777888899999999999994   2455789999999999999999


Q ss_pred             cCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCC
Q 003907           92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNS  171 (787)
Q Consensus        92 ~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~  171 (787)
                      +++..+.+.++.+||++.|++|++.|+.+...++|+.++|++|+|...   .+.+.     ...-++|+..      ...
T Consensus        71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p~-----I~~S~~Gse~------d~t  136 (788)
T KOG2109|consen   71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPPT-----IPPSQTGSEQ------DST  136 (788)
T ss_pred             ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCCc-----CCCCCCccee------ccc
Confidence            999999999999999999999999999999889999999999986622   22210     1111344421      113


Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA  251 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lA  251 (787)
                      +....++|+++..++|.|+|+                   +|+|||+.|++..+.+.+++.|+.      ..++||++++
T Consensus       137 ~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpla  191 (788)
T KOG2109|consen  137 QANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLA  191 (788)
T ss_pred             ccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeecccccc
Confidence            456778999999999999996                   899999999999999998888743      2356899999


Q ss_pred             EccceEEEecCCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccc-------eeecccccccCCC
Q 003907          252 VGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLPD  323 (787)
Q Consensus       252 lspr~LAyas~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~-------ktls~~~~~l~p~  323 (787)
                      +++||+||++....-     .+.+.+++ ..+++++++.++-.+|++|+|.+|++|.|+.       +.+++||...++.
T Consensus       192 Vg~rWaaya~~~a~~-----vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~  266 (788)
T KOG2109|consen  192 VGRRWAAYAQTLANQ-----VSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQI  266 (788)
T ss_pred             ceeeeeeeccCcchh-----hhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCC
Confidence            999999999864321     12244555 6778888888888999999999999999966       5789999988776


Q ss_pred             CCCCCcccCCccccccccccccCC-Cce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDN-AGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~-dG~--V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      +......-......+.....++.. -|+  +.+-|+.+...+.+|++|+.+|++++|+++|.+|++++..|+.|++|.++
T Consensus       267 g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim  346 (788)
T KOG2109|consen  267 GTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM  346 (788)
T ss_pred             CCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence            644333222211122222223322 455  88899999999999999999999999999999999999999999999998


Q ss_pred             CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCCCc
Q 003907          401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY  480 (787)
Q Consensus       401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~  480 (787)
                      +.....+.+.++++|.         .||.+.+.|++|+|+-+.+|++.+|-+|+=                       |.
T Consensus       347 et~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~  394 (788)
T KOG2109|consen  347 ETVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PA  394 (788)
T ss_pred             cccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------cc
Confidence            7543333332222221         478888899999999999999999955532                       45


Q ss_pred             ccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCccccccccccccCCccccccceeeeecccCcccccccc
Q 003907          481 LFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHV  560 (787)
Q Consensus       481 ~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~  560 (787)
                      +.+...+|||-.++++..-|..+.+.+.++...+++..-+.    |   ++++-.++.-.|...-..+|+.......   
T Consensus       395 ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~---  464 (788)
T KOG2109|consen  395 LSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN---  464 (788)
T ss_pred             cccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC---
Confidence            66677889999999888888887787878877777665431    1   1222223334566666777777643211   


Q ss_pred             ccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCcccccccccccCCc-eeEeecccccceeeccCCCccccccc
Q 003907          561 NSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEFI  637 (787)
Q Consensus       561 ~~~~~~~~~LlV~s~~G-~l~~y~l~p~~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~r~~~~~e~~~~~  637 (787)
                      ...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++ 
T Consensus       465 q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r-  542 (788)
T KOG2109|consen  465 QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR-  542 (788)
T ss_pred             ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC-
Confidence            13345588899999999 999999999998765544 33333332 3445677 9999999999999999999999997 


Q ss_pred             cccccCCCCceeeecccccCCCCCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCCccccccceeEEEE
Q 003907          638 SEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK  717 (787)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~~p~w~~~~~~f~~  717 (787)
                       +.|..     +.+ .....++....-   +        +. +...+.-+.+|-|+-+||+++|.. +|+|+|.+ .||-
T Consensus       543 -G~Tsa-----Kv~-~~afs~dsrw~A---~--------~t-~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhr  601 (788)
T KOG2109|consen  543 -GSTSA-----KVV-STAFSEDSRWLA---I--------TT-NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHR  601 (788)
T ss_pred             -CCccc-----eee-eeEeecchhhhh---h--------hh-cCCceeeeeeccccccccceecCC-chhccchh-hhcc
Confidence             44333     111 111111100000   0        00 124567789999999999999999 99999999 9999


Q ss_pred             cCCccc------cCCCCCceEEEEeeceeeeeeccCcccccccccccccC
Q 003907          718 MDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPS  761 (787)
Q Consensus       718 ~~~~~~------~~~~~~~~ei~~~~~~~~~~~~k~~~p~~~~~~~~~~~  761 (787)
                      |...+.      +...++|.||+++.++++|+|+|||+|+++ .++.++.
T Consensus       602 sagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rsr  650 (788)
T KOG2109|consen  602 SAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRSR  650 (788)
T ss_pred             ccCCCccccccccCCCCccceecccccccccccccccCCccc-ccCcccc
Confidence            998543      455667999999999999999999999999 5555544

>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length

Probab=100.00  E-value=5.8e-54  Score=450.82  Aligned_cols=238  Identities=47%  Similarity=0.744  Sum_probs=202.6

Q ss_pred             CCceeecceeeEEecC-CCccccccccccccCC-ccccccceeeeecccCccccccccccc-cCccccEEEEcCCccEEE
Q 003907          505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ  581 (787)
Q Consensus       505 p~~~~l~~v~~i~~~~-~~w~~~v~~~~~~a~~-~~~~p~~~v~~~f~~~~~~~~~~~~~~-~~~~~~LlV~s~~G~l~~  581 (787)
                      |+|++|+||+|||+++ .||.|+++++++++++ +...+++++|+.||++......+...+ ...+++|||++|+|+|+|
T Consensus         1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq   80 (251)
T PF12490_consen    1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ   80 (251)
T ss_pred             CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence            6789999999999998 8999999999999888 889999999999999866555544343 688999999999999999


Q ss_pred             EecccCCCCCCCCCCCcccccccccccCCceeEeecccccceeeccCCCccccc-cccccccCCCCceeeecccccCCC-
Q 003907          582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCED-  659 (787)
Q Consensus       582 y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  659 (787)
                      |+|+|+.+++....+++.+++....++|++|||+|||+|||||||+.+|+||++ ++.+...+++....   .++++++ 
T Consensus        81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~---~~~~~~~~  157 (251)
T PF12490_consen   81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSA---SKIDPSDC  157 (251)
T ss_pred             EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhh---hhcccccc
Confidence            999999999988888888888766667799999999999999999999999999 55544344443322   2444444 


Q ss_pred             CCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCCccc-----cCCCC--Cce
Q 003907          660 NYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEF  731 (787)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~p~w~~~~~~f~~~~~~~~-----~~~~~--~~~  731 (787)
                      .++++.++++.+.+.+.     +++++|++||||||||||||+++ +||||||||+||+|.++..     ++..+  |||
T Consensus       158 ~~~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~  232 (251)
T PF12490_consen  158 RKGNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEI  232 (251)
T ss_pred             cccCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCce
Confidence            34677888887666555     78899999999999999999999 8999999999999998652     45566  999


Q ss_pred             EEEEeeceeeeeeccCccc
Q 003907          732 EIEKVSVHEVEIKRKELLP  750 (787)
Q Consensus       732 ei~~~~~~~~~~~~k~~~p  750 (787)
                      ||||||+|+||+|||||||
T Consensus       233 EIE~~~~~~ve~r~k~l~p  251 (251)
T PF12490_consen  233 EIEKIPTREVEIRRKDLLP  251 (251)
T ss_pred             eeccccccceeeeccccCC
Confidence            9999999999999999998

The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=9.3e-49  Score=413.08  Aligned_cols=325  Identities=27%  Similarity=0.438  Sum_probs=279.5

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      ++.+..+.+.+|+|       +..+|.+|..+|+++|.+++.+   +..+...+.+.+++||           |.++  |
T Consensus         2 ~~~~~ti~~~~~Nq-------d~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmL-----------FSSS--L   58 (391)
T KOG2110|consen    2 NGKKPTINFIGFNQ-------DSTLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEML-----------FSSS--L   58 (391)
T ss_pred             CCCCcceeeeeecc-------ceeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEee-----------cccc--e
Confidence            35677899999997       4789999999999999998854   4566667889999999           9999  9


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCe
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ  212 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~  212 (787)
                      ||+|..+                               .|++++++++|.+..||++.|+++|++|++|+++|+|+++++
T Consensus        59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~  107 (391)
T KOG2110|consen   59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES  107 (391)
T ss_pred             eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence            9998752                               258999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       213 I~iwD~~T~e~l~tl~t~-p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      |||||+.+|+.+++|.+. |+|             .+.+|++|    .||||+++.                        
T Consensus       108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s~------------------------  150 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGST------------------------  150 (391)
T ss_pred             EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCCC------------------------
Confidence            999999999999999975 665             46788887    588887631                        


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a  367 (787)
                                                                                 ..|.|.|||+.+.+.+..|.+
T Consensus       151 -----------------------------------------------------------t~GdV~l~d~~nl~~v~~I~a  171 (391)
T KOG2110|consen  151 -----------------------------------------------------------TSGDVVLFDTINLQPVNTINA  171 (391)
T ss_pred             -----------------------------------------------------------CCceEEEEEcccceeeeEEEe
Confidence                                                                       257899999999999999999


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA  447 (787)
                      |.++|.||+||++|++|||||++|++||||.+..       |          +++|+||||.....|++|+||||+++|+
T Consensus       172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            9999999999999999999999999999999943       4          6999999999877999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCccccccccCCCCCCcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCccccc
Q 003907          448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV  527 (787)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~v  527 (787)
                      ++|+.+|||||.|+....+.                                  ...|.+            ..+|.+.+
T Consensus       235 ~sS~TeTVHiFKL~~~~~~~----------------------------------~~~p~~------------~~~~~~~~  268 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKVSNNP----------------------------------PESPTA------------GTSWFGKV  268 (391)
T ss_pred             EecCCCeEEEEEecccccCC----------------------------------CCCCCC------------CCcccchh
Confidence            99999999999998642100                                  001111            24688888


Q ss_pred             cccccccCCccccccceeeeecccCcc--ccccc--------cccccCccccEEEEcCCccEEEEecccCCCCCCCCCC
Q 003907          528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQH--------VNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG  596 (787)
Q Consensus       528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~--~~~~~--------~~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~~~  596 (787)
                      ++++.+     |+|++ |+.+++++|.  +++++        .+..+++.++++|++.|||+|.|+|+|++||||.+..
T Consensus       269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik  341 (391)
T KOG2110|consen  269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK  341 (391)
T ss_pred             hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence            777666     99999 9999999987  44444        3557789999999999999999999999999999865

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=3.8e-38  Score=327.70  Aligned_cols=316  Identities=25%  Similarity=0.322  Sum_probs=253.4

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (787)
Q Consensus        57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa  134 (787)
                      -+.+-++|+|       +..|+++|.++||+||++++   +.|..+  .+++.+..++||           |+.+  +||
T Consensus         6 ~~~lsvs~NQ-------D~ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veML-----------fR~N--~la   62 (346)
T KOG2111|consen    6 PKTLSVSFNQ-------DHSCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEML-----------FRSN--YLA   62 (346)
T ss_pred             CceeEEEEcc-------CCceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHh-----------hhhc--eEE
Confidence            3456699998       36799999999999999998   444433  345569999999           9998  999


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEE
Q 003907          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIY  214 (787)
Q Consensus       135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~  214 (787)
                      +|+|+.                          ++.++|++|.|||.....++.++.|.++|.+|++.+++|+|.++++|+
T Consensus        63 LVGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~  116 (346)
T KOG2111|consen   63 LVGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIY  116 (346)
T ss_pred             EecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEE
Confidence            987532                          124578999999999999999999999999999999999999999999


Q ss_pred             EEECC-CCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907          215 CFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (787)
Q Consensus       215 iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~  289 (787)
                      +|... +.++++.+.+.++|             .|.|++.|    .+|||++.                           
T Consensus       117 VytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg~---------------------------  156 (346)
T KOG2111|consen  117 VYTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPGF---------------------------  156 (346)
T ss_pred             EEEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCCC---------------------------
Confidence            99977 88999999998887             35677765    45555542                           


Q ss_pred             CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE--EEEecc
Q 003907          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKA  367 (787)
Q Consensus       290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~--v~~~~a  367 (787)
                                                                               ..|.|+|-|+...+.  ...+.|
T Consensus       157 ---------------------------------------------------------k~GqvQi~dL~~~~~~~p~~I~A  179 (346)
T KOG2111|consen  157 ---------------------------------------------------------KTGQVQIVDLASTKPNAPSIINA  179 (346)
T ss_pred             ---------------------------------------------------------ccceEEEEEhhhcCcCCceEEEc
Confidence                                                                     236777777766554  467899


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA  447 (787)
                      |.++|.|++++-+|+++||||.+|+.|||||..+       |          .+++++|||..++.|++|+||||+.|||
T Consensus       180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~La  242 (346)
T KOG2111|consen  180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLA  242 (346)
T ss_pred             ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEE
Confidence            9999999999999999999999999999999865       4          6899999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCccccccccCCCCCCcccCC-CCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCcccc
Q 003907          448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNT  526 (787)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~-~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~  526 (787)
                      ++|++||+|||.+....-  +.+.|+      .++.. .-||.|+.|+||.+|+.+|..+                    
T Consensus       243 vsSdKgTlHiF~l~~~~~--~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~--------------------  294 (346)
T KOG2111|consen  243 VSSDKGTLHIFSLRDTEN--TEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGT--------------------  294 (346)
T ss_pred             EEcCCCeEEEEEeecCCC--Cccccc------cccccccccchhcccceeEEEEEccCCC--------------------
Confidence            999999999999976321  112221      12222 4689999999999987776322                    


Q ss_pred             ccccccccCCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEecccCCCCCCCC
Q 003907          527 VSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD  594 (787)
Q Consensus       527 v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~  594 (787)
                                      . +..-|.+.              ...+++..-||.-+.|.++|.+||+|..
T Consensus       295 ----------------~-~~~~fg~~--------------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~  331 (346)
T KOG2111|consen  295 ----------------Q-CIIAFGSE--------------TNTVIAICADGSYYKFKFDPKNGGESSR  331 (346)
T ss_pred             ----------------c-EEEEecCC--------------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence                            1 22223322              1357888899999999999999999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.7e-23  Score=218.84  Aligned_cols=310  Identities=15%  Similarity=0.152  Sum_probs=214.3

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..++|-+.|+.+.|--       ++..|++|..+ .+|+||++. ..-..++.+|..+|.+|.+.|+.           +
T Consensus       110 S~~GH~e~Vl~~~fsp-------~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDg-----------k  170 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-------TGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDG-----------K  170 (480)
T ss_pred             ccCCCCCcEEEEEecC-------CCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCc-----------c
Confidence            4678999999999952       57889999876 599999965 44567888999999999999973           2


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCC-cEEEEEecC-----
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRS-SVCMVRCSP-----  202 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~s-~V~sV~~s~-----  202 (787)
                        .||.  |.                               .+++|++||.++|++ ...|..+. .|.++++-|     
T Consensus       171 --~iAS--G~-------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p  215 (480)
T KOG0271|consen  171 --KIAS--GS-------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP  215 (480)
T ss_pred             --hhhc--cc-------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence              4543  21                               236899999999875 45676554 799999866     


Q ss_pred             --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCc--eecC--cceecc
Q 003907          203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTL--LLSN--SGRLSP  274 (787)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~--~l~~--~g~~s~  274 (787)
                        ++||.+. |+.|+|||+.-++++.++.+|.++             +..+-+|- .||+.++.+.  .++.  .|++ .
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~-~  281 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKL-C  281 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceEEEEEccchhH-H
Confidence              6788765 567999999999999999999886             23455554 5555555442  2221  1211 1


Q ss_pred             ccCCCCCcCCCcCCCCCceeEeee--hhhhhhhhcccc---------------eeecccccccCCCCCCCCcccCCcccc
Q 003907          275 QNLTPSGVSPSTSPGGSSLVARYA--MEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKV  337 (787)
Q Consensus       275 q~lt~~~~s~s~sp~~g~lva~~a--~d~sk~la~G~~---------------ktls~~~~~l~p~~s~~~~s~s~~~~~  337 (787)
                      ..|++.          +.-+.++|  .|.+  |-.|..               +.+.+|-.- ..+              
T Consensus       282 r~lkGH----------ahwvN~lalsTdy~--LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~--------------  334 (480)
T KOG0271|consen  282 RELKGH----------AHWVNHLALSTDYV--LRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKD--------------  334 (480)
T ss_pred             Hhhccc----------chheeeeeccchhh--hhccccccccccCCChHHHHHHHHHHHHHh-hcc--------------
Confidence            111110          00001111  0000  000000               111222110 000              


Q ss_pred             ccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 003907          338 GRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN  416 (787)
Q Consensus       338 ~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~  416 (787)
                      .+-...+++.|+++.+|+-. +.+++..+.+|+.-|+.+.|||||+++|+||- ++.||+||-.+       |       
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t-------G-------  399 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRT-------G-------  399 (480)
T ss_pred             CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCC-------c-------
Confidence            00123467889999999965 45688899999999999999999999999999 56699999754       4       


Q ss_pred             CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       417 ~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                         +.+..| ||+ -+.|+.++||.|++.|+++|.|.|++||++.+.+-...+.+|...
T Consensus       400 ---k~lasf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE  453 (480)
T KOG0271|consen  400 ---KFLASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE  453 (480)
T ss_pred             ---chhhhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence               456666 463 467999999999999999999999999999998888888888543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.5e-23  Score=222.36  Aligned_cols=278  Identities=18%  Similarity=0.147  Sum_probs=212.9

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      ++...|..+.|-.       +...|++|+-+| .+||++.. .+...+|.+|.+.|..+.|-|.-           +.--
T Consensus       173 gd~rPis~~~fS~-------ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~~  233 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-------DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDLN  233 (459)
T ss_pred             cCCCcceeeEeec-------CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Cccc
Confidence            4556688888854       467999999998 79999965 47788899999999999999841           1113


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-  208 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-  208 (787)
                      ||.++                                 .+++|++|++.+-+.+..|+.+ .+|..|+|+|  ++|+++ 
T Consensus       234 lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas  280 (459)
T KOG0272|consen  234 LATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS  280 (459)
T ss_pred             eeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc
Confidence            44432                                 2468999999998999999876 5999999988  788875 


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +|..-++||+.|.+.+...++|..+             +-.+|+.|  ..+|+++.+.    .|++ |+..++.++    
T Consensus       281 fD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~iaf~~DGSL~~tGGlD~----~~Rv-WDlRtgr~i----  338 (459)
T KOG0272|consen  281 FDSTWRLWDLETKSELLLQEGHSKG-------------VFSIAFQPDGSLAATGGLDS----LGRV-WDLRTGRCI----  338 (459)
T ss_pred             cccchhhcccccchhhHhhcccccc-------------cceeEecCCCceeeccCccc----hhhe-eecccCcEE----
Confidence            5678999999999998888888763             34577777  6677777652    2444 776664221    


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                          -                    .|.++..+          ..+..|.+++..+++++.|++++|||++..+.+.+|.
T Consensus       339 ----m--------------------~L~gH~k~----------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip  384 (459)
T KOG0272|consen  339 ----M--------------------FLAGHIKE----------ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP  384 (459)
T ss_pred             ----E--------------------Eecccccc----------eeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence                0                    11111111          1223455667778899999999999999999999999


Q ss_pred             cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       367 aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      +|..-|+.++|+| .|.+|+|||.|.+ ++||....       +          .++..|. |+ ...|.++..|+||++
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~-------~----------~~~ksLa-GH-e~kV~s~Dis~d~~~  444 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT-------W----------SPLKSLA-GH-EGKVISLDISPDSQA  444 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcc-eeeecCCC-------c----------ccchhhc-CC-ccceEEEEeccCCce
Confidence            9999999999999 7999999999665 99998643       1          3555554 54 357999999999999


Q ss_pred             EEEEeCCCeEEEEe
Q 003907          446 IAIVSSKGTCHVFV  459 (787)
Q Consensus       446 LAs~S~dgTVhIwd  459 (787)
                      |++++.|.|+++|.
T Consensus       445 i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 IATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCceeeecc
Confidence            99999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.90  E-value=6e-23  Score=234.36  Aligned_cols=230  Identities=19%  Similarity=0.252  Sum_probs=172.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCC------------------------------CceeEeeeeccCcEEEEEEecCCCCCCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDA------------------------------SNFNELVSKRDGPVSFLQMQPFPVKDDG  122 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~------------------------------~~~~ells~~dg~V~~v~~lP~P~~~~~  122 (787)
                      +.+.|++|..+- ++||.+.+.                              +...+.+-+|.|||..+.+.|+      
T Consensus       389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd------  462 (707)
T KOG0263|consen  389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD------  462 (707)
T ss_pred             CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc------
Confidence            466899998874 899998741                              1123335678899999998874      


Q ss_pred             CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEec
Q 003907          123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCS  201 (787)
Q Consensus       123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s  201 (787)
                             +-+|+.++  +                               +.+||+|++.+..++..++.+ .+|++|+|+
T Consensus       463 -------~rfLlScS--E-------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  463 -------RRFLLSCS--E-------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA  502 (707)
T ss_pred             -------ccceeecc--C-------------------------------CcceeeeecccceeEEEecCCCcceeeEEec
Confidence                   23554422  1                               268999999999999999876 499999999


Q ss_pred             C--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907          202 P--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       202 ~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                      |  .++|++. |.+..+|.....+.+..+.+|-.             ..+.++|+|+                       
T Consensus       503 P~GyYFatas~D~tArLWs~d~~~PlRifaghls-------------DV~cv~FHPN-----------------------  546 (707)
T KOG0263|consen  503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-------------DVDCVSFHPN-----------------------  546 (707)
T ss_pred             CCceEEEecCCCceeeeeecccCCchhhhccccc-------------ccceEEECCc-----------------------
Confidence            9  4677655 45689998766555544444332             1233444430                       


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                                                                                  ...+++++.|.+|++||+.+
T Consensus       547 ------------------------------------------------------------s~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  547 ------------------------------------------------------------SNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             ------------------------------------------------------------ccccccCCCCceEEEEEcCC
Confidence                                                                        01123445688999999999


Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                      +..++.|.+|+++|.+|+|||+|++||+|++||. |+|||+..       |          ..+..+ +|+ .+.|++|+
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~~l-~~H-t~ti~Sls  626 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVKQL-KGH-TGTIYSLS  626 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchhhh-hcc-cCceeEEE
Confidence            9999999999999999999999999999999775 99999953       2          244444 455 56899999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          439 FSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       439 FSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ||.||..||+++.|.+|++||+...-+
T Consensus       627 FS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  627 FSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999999999999999999976433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.4e-22  Score=211.49  Aligned_cols=308  Identities=13%  Similarity=0.103  Sum_probs=207.6

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      |+.-|+.+.+       +.+++.|+.|..+| |++||-...+...+.|.+|..+|..+.+.|--...       +.| +|
T Consensus       156 H~~WVlcvaw-------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-------~~r-~l  220 (480)
T KOG0271|consen  156 HKNWVLCVAW-------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-------PCR-RL  220 (480)
T ss_pred             CccEEEEEEE-------CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-------Ccc-ce
Confidence            4445555554       34689999999988 99999887777888999999999999999854322       223 45


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC-CeEEEEe-C
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP-RIVAVGL-A  210 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~-~~LaV~~-~  210 (787)
                      |..+                                 .++.|+|||++.++++..+..+. +|.+|++-. .+|..+. |
T Consensus       221 as~s---------------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D  267 (480)
T KOG0271|consen  221 ASSS---------------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD  267 (480)
T ss_pred             eccc---------------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence            4311                                 24689999999999999998764 999999985 6777765 5


Q ss_pred             CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceE----EEec--CCceec-CcceeccccCCCCCcC
Q 003907          211 TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWL----AYAS--NTLLLS-NSGRLSPQNLTPSGVS  283 (787)
Q Consensus       211 ~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~L----Ayas--~~~~l~-~~g~~s~q~lt~~~~s  283 (787)
                      .+|++|++.++++..++.+|..+             .+.+|++..|.    ||-.  ..+... .........+.. +  
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahw-------------vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~-~--  331 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHW-------------VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA-V--  331 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchh-------------eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH-h--
Confidence            57999999999999999988764             56788876332    2211  000000 000000000000 0  


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccc-----eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~-----ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                         -+.++...+...-|...-+.....     ..++++..      -.+..+|+|+.+.    +++++.|..|++||-.+
T Consensus       332 ---~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~------lVn~V~fSPd~r~----IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  332 ---LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA------LVNHVSFSPDGRY----IASASFDKSVKLWDGRT  398 (480)
T ss_pred             ---hccCcceeEEecCCceEEEecccccccchhhhhchhh------heeeEEECCCccE----EEEeecccceeeeeCCC
Confidence               000000001111110000000000     01122211      1345667776665    56889999999999999


Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                      |+.+++|++|-.+|.-++|+.|.++|+++|. +++++|||++.-                 ...++| -| +...|+++.
T Consensus       399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------------Kl~~DL-pG-h~DEVf~vD  458 (480)
T KOG0271|consen  399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------------KLKQDL-PG-HADEVFAVD  458 (480)
T ss_pred             cchhhhhhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------------eecccC-CC-CCceEEEEE
Confidence            9999999999999999999999999999999 566999999641                 222344 34 346899999


Q ss_pred             EccCCCEEEEEeCCCeEEEEe
Q 003907          439 FSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       439 FSpDg~~LAs~S~dgTVhIwd  459 (787)
                      |||||+.+|+++.|..++||.
T Consensus       459 wspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  459 WSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceeecCCCceEEEeec
Confidence            999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=190.43  Aligned_cols=269  Identities=19%  Similarity=0.227  Sum_probs=178.5

Q ss_pred             EEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCC----C----CCccccC-cEEEEEEcCCCCCCCCC
Q 003907           77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG----C----EGFRKLH-PFLLVVAGEDTNTLAPG  147 (787)
Q Consensus        77 vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~----~----d~F~~sr-pLLavV~~d~~~~~~~~  147 (787)
                      +...||+..||+|... +|.|..++...|+.|..+++.|+...-..    .    |.=..+. |+.-..+.        +
T Consensus        13 LvsA~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h--------~   83 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH--------T   83 (311)
T ss_pred             EEeccCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc--------C
Confidence            3345778899999994 69999999999999999999986321100    0    1111110 21111000        0


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCcee
Q 003907          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK  224 (787)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l  224 (787)
                      .+...+|.-.+|.|....+    .++++||||++.-.+-+.+++.++|..|-.+|  .-|+++. .+.|++||+.+-.+-
T Consensus        84 kNVtaVgF~~dgrWMyTgs----eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGS----EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             CceEEEEEeecCeEEEecC----CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence            1111222236888873322    36899999999988888999999999999988  3566665 467999998765433


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~  304 (787)
                      +.+    .|+.        ......+++.|       +                           +.-+           
T Consensus       160 ~~l----iPe~--------~~~i~sl~v~~-------d---------------------------gsml-----------  182 (311)
T KOG0315|consen  160 HEL----IPED--------DTSIQSLTVMP-------D---------------------------GSML-----------  182 (311)
T ss_pred             ccc----CCCC--------CcceeeEEEcC-------C---------------------------CcEE-----------
Confidence            322    2210        00011222211       1                           0101           


Q ss_pred             hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC------cEEEEeccCCCCeEEEEEC
Q 003907          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISALCFD  378 (787)
Q Consensus       305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------~~v~~~~aH~~pIsaLaFS  378 (787)
                                                            +.+.+.|.+.+|++-+.      +++.+|++|++-|...-||
T Consensus       183 --------------------------------------~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  183 --------------------------------------AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             --------------------------------------EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence                                                  11234678888887653      4677899999999999999


Q ss_pred             CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE-EEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907          379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL-YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (787)
Q Consensus       379 pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l-~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI  457 (787)
                      ||+++|||+|. +++++||++...                 -++ ..+ .| ++..+++++||.||+||++++.|+++|+
T Consensus       225 Pd~k~lat~ss-dktv~iwn~~~~-----------------~kle~~l-~g-h~rWvWdc~FS~dg~YlvTassd~~~rl  284 (311)
T KOG0315|consen  225 PDVKYLATCSS-DKTVKIWNTDDF-----------------FKLELVL-TG-HQRWVWDCAFSADGEYLVTASSDHTARL  284 (311)
T ss_pred             CCCcEEEeecC-CceEEEEecCCc-----------------eeeEEEe-ec-CCceEEeeeeccCccEEEecCCCCceee
Confidence            99999999999 556999998431                 111 122 23 2357999999999999999999999999


Q ss_pred             EeCCCCCCcccccccc
Q 003907          458 FVLSPFGGDSGFQTLS  473 (787)
Q Consensus       458 wdl~~~gg~~~~~~H~  473 (787)
                      |++...+......+|-
T Consensus       285 W~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  285 WDLSAGKEVRQYQGHH  300 (311)
T ss_pred             cccccCceeeecCCcc
Confidence            9998866655666663

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=2.2e-20  Score=200.88  Aligned_cols=227  Identities=16%  Similarity=0.128  Sum_probs=173.4

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecCC----eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR----IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~----~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      +.++||+..+.+.+++|..+ +.|-++.|.|.    -||+| .|+.+++|++.+-+.+..|.+|...             
T Consensus       197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R-------------  263 (459)
T KOG0272|consen  197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR-------------  263 (459)
T ss_pred             CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh-------------
Confidence            68999999999999999876 58999999883    56664 5678999999988888999888753             


Q ss_pred             cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      +..++|.|  ++|+++..+.     .-..|+.-+..                       ++              ++..|
T Consensus       264 Vs~VafHPsG~~L~TasfD~-----tWRlWD~~tk~-----------------------El--------------L~QEG  301 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFDS-----TWRLWDLETKS-----------------------EL--------------LLQEG  301 (459)
T ss_pred             heeeeecCCCceeeeccccc-----chhhcccccch-----------------------hh--------------Hhhcc
Confidence            35688988  9999988652     11124432210                       00              01111


Q ss_pred             ---CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          325 ---SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       325 ---s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                         ....+++.++    +...++++.|..-+|||+++++.+..|.+|..+|..|+|||+|..|||||.|++ +||||++-
T Consensus       302 Hs~~v~~iaf~~D----GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~  376 (459)
T KOG0272|consen  302 HSKGVFSIAFQPD----GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRM  376 (459)
T ss_pred             cccccceeEecCC----CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecc
Confidence               1222333333    333457888999999999999999999999999999999999999999999665 99999963


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      .                 ..+|..- + |...|..+.|+| -|++|+++|.|+|++||.-........+.+|...+..
T Consensus       377 r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s  435 (459)
T KOG0272|consen  377 R-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS  435 (459)
T ss_pred             c-----------------ccceecc-c-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence            1                 3466654 2 445799999999 6899999999999999998888778889999765433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.85  E-value=4.6e-19  Score=192.83  Aligned_cols=280  Identities=19%  Similarity=0.254  Sum_probs=203.8

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa  134 (787)
                      ..+|+...++.       ++..|++|.-+| ++||+.  .|++...|..|.|||..|++...             ..+|+
T Consensus       235 nkdVT~L~Wn~-------~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~-------------G~yil  292 (524)
T KOG0273|consen  235 NKDVTSLDWNN-------DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKK-------------GTYIL  292 (524)
T ss_pred             cCCcceEEecC-------CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCC-------------CCEEE
Confidence            34566666653       488999999999 699997  47788889999999999998842             23554


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEecC-CeEEE-EeCC
Q 003907          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAV-GLAT  211 (787)
Q Consensus       135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V-~sV~~s~-~~LaV-~~~~  211 (787)
                      .  ++                               .++++.+||..+|+.-..+.|++.. ++|.+-. .-+|+ +.+.
T Consensus       293 S--~~-------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~  339 (524)
T KOG0273|consen  293 S--GG-------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG  339 (524)
T ss_pred             e--cc-------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence            3  21                               2478999999999999999999876 8899854 45555 4567


Q ss_pred             eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCccee-ccccCCCCCcCCCc
Q 003907          212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRL-SPQNLTPSGVSPST  286 (787)
Q Consensus       212 ~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~g~~-s~q~lt~~~~s~s~  286 (787)
                      .|++|.+.--....++.+|.++             .+.+-+.|  ..||.++++.  .+|+.+.- +...+...      
T Consensus       340 ~i~V~kv~~~~P~~t~~GH~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H------  400 (524)
T KOG0273|consen  340 CIHVCKVGEDRPVKTFIGHHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH------  400 (524)
T ss_pred             eEEEEEecCCCcceeeecccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh------
Confidence            8999998887788888888775             45677777  7899988763  44443211 00000000      


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                     +|+    +      |.-...|.+-.   -.++   ..+.+++.+..|++|++||+..+.+++.|.
T Consensus       401 ---------------ske----i------~t~~wsp~g~v---~~n~---~~~~~l~sas~dstV~lwdv~~gv~i~~f~  449 (524)
T KOG0273|consen  401 ---------------SKE----I------YTIKWSPTGPV---TSNP---NMNLMLASASFDSTVKLWDVESGVPIHTLM  449 (524)
T ss_pred             ---------------ccc----e------eeEeecCCCCc---cCCC---cCCceEEEeecCCeEEEEEccCCceeEeec
Confidence                           000    0      00011121110   0111   122345678899999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      .|+.||.+|+|||+|++||+||.||. |+||+++.       +           .+++-.+|.  ..|..++|+.+|.+|
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKL  508 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCe-eEeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEE
Confidence            99999999999999999999999665 99999864       2           455555553  459999999999999


Q ss_pred             EEEeCCCeEEEEeCC
Q 003907          447 AIVSSKGTCHVFVLS  461 (787)
Q Consensus       447 As~S~dgTVhIwdl~  461 (787)
                      +++-.|+.+.+-|+.
T Consensus       509 ~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  509 GACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCceEEEec
Confidence            999999999998874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=5.4e-18  Score=172.22  Aligned_cols=278  Identities=19%  Similarity=0.244  Sum_probs=192.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|+.       .++.|++|..+| +++||++. ++....+..|..++..+.+.|+.             
T Consensus         5 ~~~h~~~i~~~~~~~-------~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-------------   63 (289)
T cd00200           5 LKGHTGGVTCVAFSP-------DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG-------------   63 (289)
T ss_pred             hcccCCCEEEEEEcC-------CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC-------------
Confidence            346889999999974       256788887655 99999965 44556677788889888888631             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV  207 (787)
                      .+|++++ .                                ++.|++||+.+++.+..+..+. .|..+.+++  +++++
T Consensus        64 ~~l~~~~-~--------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  110 (289)
T cd00200          64 TYLASGS-S--------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS  110 (289)
T ss_pred             CEEEEEc-C--------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE
Confidence            2554422 1                                2589999999988888887554 899999988  67777


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +. ++.|++||+.+++....+..+..+             ...++++|  ++|+.+..+..     ...|+..+.     
T Consensus       111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~-----i~i~d~~~~-----  167 (289)
T cd00200         111 SSRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGT-----IKLWDLRTG-----  167 (289)
T ss_pred             ecCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCc-----EEEEEcccc-----
Confidence            77 778999999988887777654432             34577777  66666652211     011221110     


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                             ...                +.+..      ..+....+.++++.+    .+..+..+|.|++||+.+++.+..
T Consensus       168 -------~~~----------------~~~~~------~~~~i~~~~~~~~~~----~l~~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         168 -------KCV----------------ATLTG------HTGEVNSVAFSPDGE----KLLSSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             -------ccc----------------eeEec------CccccceEEECCCcC----EEEEecCCCcEEEEECCCCceecc
Confidence                   000                00000      000111122222221    233455599999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (787)
                      +..|..+|.+++|+|++.++++++.+|. |++||+..       +          ..+..+. + +...|.+++|+|+++
T Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~~~  274 (289)
T cd00200         215 LRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPDGK  274 (289)
T ss_pred             hhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCCCC
Confidence            9999999999999999999999987675 99999853       2          3444444 2 345699999999999


Q ss_pred             EEEEEeCCCeEEEEe
Q 003907          445 WIAIVSSKGTCHVFV  459 (787)
Q Consensus       445 ~LAs~S~dgTVhIwd  459 (787)
                      +|++++.|++++||+
T Consensus       275 ~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 RLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEecCCCeEEecC
Confidence            999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.82  E-value=4e-18  Score=176.81  Aligned_cols=258  Identities=13%  Similarity=0.084  Sum_probs=189.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .-+|..+|+...|-.       +.+.|+.++++| +-|||.-.+ +....+..+..+|-.+++.|.             .
T Consensus        51 LkGH~~Ki~~~~ws~-------Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPS-------------g  109 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWST-------DSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPS-------------G  109 (343)
T ss_pred             ecccccceeeeEecC-------CcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCC-------------C
Confidence            467788888777753       467899999998 799998654 445667778889999998874             2


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEeCC-CcEEEEEecC-
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLRFR-SSVCMVRCSP-  202 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg------~~v~tL~f~-s~V~sV~~s~-  202 (787)
                      .++|  +|+                               .++...||++++.      ...++|..+ +-+..++|-+ 
T Consensus       110 ~~VA--cGG-------------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen  110 NFVA--CGG-------------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             CeEE--ecC-------------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence            3553  221                               1368899999865      234455544 4677777754 


Q ss_pred             -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907          203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       203 -~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                       ++|..+.+.+..+||+.+++....+.+|..-               .++|     +.++++                  
T Consensus       157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD---------------V~sl-----sl~p~~------------------  198 (343)
T KOG0286|consen  157 NHILTGSGDMTCALWDIETGQQTQVFHGHTGD---------------VMSL-----SLSPSD------------------  198 (343)
T ss_pred             CceEecCCCceEEEEEcccceEEEEecCCccc---------------EEEE-----ecCCCC------------------
Confidence             4555556778999999999988888776541               2333     111110                  


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                                                               ..++++++.|+..+|||++.+..
T Consensus       199 ---------------------------------------------------------~ntFvSg~cD~~aklWD~R~~~c  221 (343)
T KOG0286|consen  199 ---------------------------------------------------------GNTFVSGGCDKSAKLWDVRSGQC  221 (343)
T ss_pred             ---------------------------------------------------------CCeEEecccccceeeeeccCcce
Confidence                                                                     01233567789999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      +.+|.+|++.|++++|.|+|.-+||+|+|++ +|+||++..                 +.+..+..-.....|++++||-
T Consensus       222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence            9999999999999999999999999999776 999999652                 2444443322345699999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccccCCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG  476 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~  476 (787)
                      .|++|.+|-.|.+++|||.-.....-.+.+|...+
T Consensus       284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv  318 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV  318 (343)
T ss_pred             cccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence            99999999999999999987654445677886543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=3.4e-19  Score=202.03  Aligned_cols=369  Identities=17%  Similarity=0.152  Sum_probs=226.4

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      .+-+++..|.-+.|..     ...+.+|+.|+.++ +++||+.....+..+...|-..|..+.|.++..     ..++..
T Consensus       142 ~fkG~gGvVssl~F~~-----~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-----~~ls~~  211 (775)
T KOG0319|consen  142 SFKGHGGVVSSLLFHP-----HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-----ELLSVG  211 (775)
T ss_pred             EecCCCceEEEEEeCC-----ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-----eEEEec
Confidence            4677888899899985     33457999999987 899999754445556777888999999987521     111111


Q ss_pred             CcEEEEEEcCCCC----CCCCCCCcCCCCCc---ccCCcCCCCCC--CCCCCCEEEEEECCCCeEEEEEeCCC-----cE
Q 003907          130 HPFLLVVAGEDTN----TLAPGQNRSHLGGV---RDGMMDSQSGN--CVNSPTAVRFYSFQSHCYEHVLRFRS-----SV  195 (787)
Q Consensus       130 rpLLavV~~d~~~----~~~~~~~~~~~~~~---r~g~~~~~~~~--~~~~p~tVrlWdlktg~~v~tL~f~s-----~V  195 (787)
                      |.-+..+ -|-..    ...+  ...+..++   +++. +....+  .+...+++++||.++++++...+-+.     ..
T Consensus       212 RDkvi~v-wd~~~~~~l~~lp--~ye~~E~vv~l~~~~-~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~  287 (775)
T KOG0319|consen  212 RDKVIIV-WDLVQYKKLKTLP--LYESLESVVRLREEL-GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHL  287 (775)
T ss_pred             cCcEEEE-eehhhhhhhheec--hhhheeeEEEechhc-CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcc
Confidence            1111000 00000    0000  00111111   2200 000011  12356889999998888876665431     22


Q ss_pred             EEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee--cCcce
Q 003907          196 CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL--SNSGR  271 (787)
Q Consensus       196 ~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l--~~~g~  271 (787)
                      ..+.-+.++|++..+.++.+||..+++....|.++..-         +   +...-+||  ++||.+++.+-+  .+...
T Consensus       288 ~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE---------I---~Dm~~lG~e~~~laVATNs~~lr~y~~~~  355 (775)
T KOG0319|consen  288 LAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE---------I---LDMKFLGPEESHLAVATNSPELRLYTLPT  355 (775)
T ss_pred             eeccccCceEEEEccceEEEEEccccEEehhhcCCchh---------h---eeeeecCCccceEEEEeCCCceEEEecCC
Confidence            33334557888888888999998888877777765431         0   22345677  888888875421  11111


Q ss_pred             eccccCCC---CCcCCCcCCCCCceeEeeehhhhhhhh---cccc-----eeecccccccCCCCCCCCcccCCccccccc
Q 003907          272 LSPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRH  340 (787)
Q Consensus       272 ~s~q~lt~---~~~s~s~sp~~g~lva~~a~d~sk~la---~G~~-----ktls~~~~~l~p~~s~~~~s~s~~~~~~~~  340 (787)
                      ...+.+.+   ...+... .+.|.+.+.+++|.+..+.   .+..     +..+++.+      +...+..   .+....
T Consensus       356 ~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~------svgava~---~~~~as  425 (775)
T KOG0319|consen  356 SYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN------SVGAVAG---SKLGAS  425 (775)
T ss_pred             CceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc------ccceeee---cccCcc
Confidence            11122222   1223332 1335677888888654443   1110     01111111      1111111   122222


Q ss_pred             cccccCCCceEEEEECCCCc---------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907          341 AGADMDNAGIVVVKDFVTRA---------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~~---------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~  411 (787)
                      .++++++|+++++|++...+         ...+..+|...|++++.+|+.+++||||. |++.+||++..       +  
T Consensus       426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~-------~--  495 (775)
T KOG0319|consen  426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQ-------L--  495 (775)
T ss_pred             EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-ccceeeecccC-------c--
Confidence            35678999999999997621         11234689999999999999999999999 55699999952       2  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                              +.+..|. |+++ .|+|+.|+|..+.||++|.|+||+||.|+++.+..+|.+|+..
T Consensus       496 --------~l~~vLs-GH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a  549 (775)
T KOG0319|consen  496 --------RLLGVLS-GHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA  549 (775)
T ss_pred             --------eEEEEee-CCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence                    4666664 6554 4999999999999999999999999999999999999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-17  Score=171.46  Aligned_cols=248  Identities=15%  Similarity=0.174  Sum_probs=179.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC----CceeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~----~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F  126 (787)
                      .++|++.|+-...-.      ..+..|+.+.++. +-+|++...    |...+.+.+|.--|.-+.+.++.         
T Consensus        11 l~gh~d~Vt~la~~~------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg---------   75 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKI------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG---------   75 (315)
T ss_pred             ecCCCceEEEEEeec------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC---------
Confidence            578999998776643      1456788888775 899999543    33345566666667777666532         


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--C
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--R  203 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~  203 (787)
                        +  + |+ +                     |+|          ++++|+||+.+|+..+.|..|. -|++|++++  +
T Consensus        76 --~--~-al-S---------------------~sw----------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~  118 (315)
T KOG0279|consen   76 --N--F-AL-S---------------------ASW----------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR  118 (315)
T ss_pred             --c--e-EE-e---------------------ccc----------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence              1  2 22 1                     122          4799999999999999998775 789999988  5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       204 ~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      .++.|. |.+|.+||... ++.+++......+           ++..+-|+|+-     +.+                  
T Consensus       119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~-----------WVscvrfsP~~-----~~p------------------  163 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE-----------WVSCVRFSPNE-----SNP------------------  163 (315)
T ss_pred             eeecCCCcceeeeeeecc-cEEEEEecCCCcC-----------cEEEEEEcCCC-----CCc------------------
Confidence            666655 66799999764 4566665422100           12223332210     000                  


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                                                                                .+++++.|++|+|||+.+.+..
T Consensus       164 ----------------------------------------------------------~Ivs~s~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  164 ----------------------------------------------------------IIVSASWDKTVKVWNLRNCQLR  185 (315)
T ss_pred             ----------------------------------------------------------EEEEccCCceEEEEccCCcchh
Confidence                                                                      1234567999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      ..+.+|++.++.+++||||.++|+|+.||. +.+||+..       +          +++|.+..   ...|.+|+|+|.
T Consensus       186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~-------~----------k~lysl~a---~~~v~sl~fspn  244 (315)
T KOG0279|consen  186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE-------G----------KNLYSLEA---FDIVNSLCFSPN  244 (315)
T ss_pred             hccccccccEEEEEECCCCCEEecCCCCce-EEEEEccC-------C----------ceeEeccC---CCeEeeEEecCC
Confidence            999999999999999999999999999775 89999964       3          57888753   357999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          443 SQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      --||+.+...+ |+|||+++....
T Consensus       245 rywL~~at~~s-IkIwdl~~~~~v  267 (315)
T KOG0279|consen  245 RYWLCAATATS-IKIWDLESKAVV  267 (315)
T ss_pred             ceeEeeccCCc-eEEEeccchhhh
Confidence            99999887665 999999875443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3e-18  Score=181.89  Aligned_cols=254  Identities=15%  Similarity=0.164  Sum_probs=192.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|.-+.||.       .+++|+.+..+- +++||.+..-++.+.+.+|+-.|.++.++|..             
T Consensus       146 LrGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------  205 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------  205 (406)
T ss_pred             hhccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------
Confidence            456777788888874       368999999987 99999987667788889999999999999852             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV  207 (787)
                      ..|+.++                                 .+++|+.|++.+|.++.++..++ -|..|+.+.  .++|.
T Consensus       206 d~ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  206 DHILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             Ceeeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence            1454322                                 24689999999999999998765 688999988  46666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. +.++++|-..+++++..++.|..|             +-.+++-|- .+|+.                    ++-++
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~wap~-~~~~~--------------------i~~at  298 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEHP-------------VECIAWAPE-SSYPS--------------------ISEAT  298 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhccccc-------------eEEEEeccc-ccCcc--------------------hhhcc
Confidence            54 457999999999888888877664             223444220 01111                    00000


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                      ...+                                               .+.....++.|++|++||+.++.++.+|.
T Consensus       299 ~~~~-----------------------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~  331 (406)
T KOG0295|consen  299 GSTN-----------------------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLV  331 (406)
T ss_pred             CCCC-----------------------------------------------CccEEEeecccceEEEEeccCCeEEEEEe
Confidence            0000                                               00112356789999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      +|...|..++|+|-|+||+++.+|+ ++||||++.       +          +++..+.-  +..-+.++.|..+.-++
T Consensus       332 ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~-------~----------~cmk~~~a--h~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  332 GHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKN-------L----------QCMKTLEA--HEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             cccceeeeeEEcCCCeEEEEEecCC-cEEEEEecc-------c----------eeeeccCC--CcceeEEEecCCCCceE
Confidence            9999999999999999999999965 599999965       2          46655542  33458999999999999


Q ss_pred             EEEeCCCeEEEEe
Q 003907          447 AIVSSKGTCHVFV  459 (787)
Q Consensus       447 As~S~dgTVhIwd  459 (787)
                      ++|+-|.|+++|.
T Consensus       392 vTGsVdqt~KvwE  404 (406)
T KOG0295|consen  392 VTGSVDQTVKVWE  404 (406)
T ss_pred             Eeccccceeeeee
Confidence            9999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.9e-17  Score=186.62  Aligned_cols=270  Identities=16%  Similarity=0.219  Sum_probs=181.2

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      -++|++|-.+| |.+|.+. .-++...++-.+-+|..+.+.             .....||+-+. .             
T Consensus       277 t~~lvvgFssG~f~LyelP-~f~lih~LSis~~~I~t~~~N-------------~tGDWiA~g~~-k-------------  328 (893)
T KOG0291|consen  277 TNLLVVGFSSGEFGLYELP-DFNLIHSLSISDQKILTVSFN-------------STGDWIAFGCS-K-------------  328 (893)
T ss_pred             ceEEEEEecCCeeEEEecC-CceEEEEeecccceeeEEEec-------------ccCCEEEEcCC-c-------------
Confidence            46899999999 7899994 455667777777778877765             22337776221 1             


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEEe
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~T~e~l~tl~t  229 (787)
                                        -+.+-||+.++..+|-..+.| ..+.+++.+|+  ++|+|.+ ++|++||...+-+..|+..
T Consensus       329 ------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte  390 (893)
T KOG0291|consen  329 ------------------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE  390 (893)
T ss_pred             ------------------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc
Confidence                              147999999999999888866 48999999994  8888764 5899999999999999988


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCccee-ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~-s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      |.+.             +..+.+.-  +.|-.++-+      |++ .|+.-......+.++|.--++ +.+|.       
T Consensus       391 Hts~-------------Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~Qf-scvav-------  443 (893)
T KOG0291|consen  391 HTSG-------------VTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQF-SCVAV-------  443 (893)
T ss_pred             CCCc-------------eEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecCCCceee-eEEEE-------
Confidence            7762             12222221  233333222      222 233322221111122211110 11111       


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCC-ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA-GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d-G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA  385 (787)
                                               ++.+..    +..++.| =.|.||++++|+.+-.|.+|.+||.+|+|+|+|..||
T Consensus       444 -------------------------D~sGel----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La  494 (893)
T KOG0291|consen  444 -------------------------DPSGEL----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA  494 (893)
T ss_pred             -------------------------cCCCCE----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence                                     111110    1122333 3699999999999999999999999999999999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      |+|. |++||+||+-..     .|           ..-++.   ....+.+++|+|||+-||+++.||.|.+||++....
T Consensus       495 S~SW-DkTVRiW~if~s-----~~-----------~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  495 SGSW-DKTVRIWDIFSS-----SG-----------TVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             eccc-cceEEEEEeecc-----Cc-----------eeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence            9999 556999998421     11           222332   224589999999999999999999999999986543


Q ss_pred             c
Q 003907          466 D  466 (787)
Q Consensus       466 ~  466 (787)
                      .
T Consensus       555 ~  555 (893)
T KOG0291|consen  555 V  555 (893)
T ss_pred             e
Confidence            3

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.79  E-value=7.5e-18  Score=175.35  Aligned_cols=268  Identities=15%  Similarity=0.100  Sum_probs=192.6

Q ss_pred             eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907           46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      +.|-. ..+|+..|.-+.|+-       ++.+|++|.-+ -|-+|++...-+-.-.+.+|.|.|-.|.+.++        
T Consensus        38 ap~m~-l~gh~geI~~~~F~P-------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d--------  101 (338)
T KOG0265|consen   38 APIML-LPGHKGEIYTIKFHP-------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD--------  101 (338)
T ss_pred             chhhh-cCCCcceEEEEEECC-------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC--------
Confidence            34433 678999999999983       46788887665 59999984332334467799999999998754        


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE-EEEe---
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-MVRC---  200 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~-sV~~---  200 (787)
                         .+  .|+. ++                                ++++|+.||+++|+.+..++.+..+. ++.-   
T Consensus       102 ---~s--~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr  143 (338)
T KOG0265|consen  102 ---GS--HILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR  143 (338)
T ss_pred             ---CC--EEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCcccc
Confidence               22  3332 22                                24799999999999999998876544 3333   


Q ss_pred             cCCeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          201 SPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       201 s~~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                      ++.+|..+.+ .++++||+++-+.++++..   +             |-..|+     ++...                 
T Consensus       144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---k-------------yqltAv-----~f~d~-----------------  185 (338)
T KOG0265|consen  144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---K-------------YQLTAV-----GFKDT-----------------  185 (338)
T ss_pred             CCeEEEecCCCceEEEEeecccchhhcccc---c-------------eeEEEE-----Eeccc-----------------
Confidence            3356666654 5899999997766555432   1             112232     11110                 


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                            +.+                                     +.++.-|+.|++||++.+
T Consensus       186 ----------------------s~q-------------------------------------v~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  186 ----------------------SDQ-------------------------------------VISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             ----------------------ccc-------------------------------------eeeccccCceeeeccccC
Confidence                                  000                                     112345789999999999


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEE
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDI  437 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~sl  437 (787)
                      ....++.+|..+|+.|..+|+|.+|.+-+.|. ++++||++|.             .++.+++..+..+.++-  ....+
T Consensus       207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~-tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDN-TVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             cceEEeecccCceeeEEeccCCCccccccccc-eEEEEEeccc-------------CCCCceEEEeecchhhhhhhccee
Confidence            99999999999999999999999999999954 5999999873             22235566666544443  35678


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      +|||+++++.++|.|..+++||....+....+.+|...+..
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~  313 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE  313 (338)
T ss_pred             eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence            99999999999999999999999877777788888654433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.79  E-value=7e-17  Score=196.60  Aligned_cols=236  Identities=14%  Similarity=0.212  Sum_probs=161.5

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +..|++|..+| ++|||+.. ++....+..|.+.|..+.+.|.            ...+|+. ++               
T Consensus       545 ~~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~------------~~~~L~S-gs---------------  595 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSA------------DPTLLAS-GS---------------  595 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCC------------CCCEEEE-Ec---------------
Confidence            45677776665 99999964 5566677889999999999862            1125544 21               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce-eEEEE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN-KFSVL  228 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~-l~tl~  228 (787)
                                       .+++|++||+++++.+.++..+..|..+.+++   +.|++|. ++.|++||+.+.+. +.++.
T Consensus       596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~  658 (793)
T PLN00181        596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI  658 (793)
T ss_pred             -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence                             13689999999999999999888999999853   6777765 56899999987652 34444


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      +|..+             .       .++++....                                             
T Consensus       659 ~h~~~-------------V-------~~v~f~~~~---------------------------------------------  673 (793)
T PLN00181        659 GHSKT-------------V-------SYVRFVDSS---------------------------------------------  673 (793)
T ss_pred             CCCCC-------------E-------EEEEEeCCC---------------------------------------------
Confidence            43321             1       112222100                                             


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCC
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGT  382 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s------~~~v~~~~aH~~pIsaLaFSpdG~  382 (787)
                                                      .+++++.||+|+|||+..      ...+..+.+|...+.+++|+|+|.
T Consensus       674 --------------------------------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~  721 (793)
T PLN00181        674 --------------------------------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG  721 (793)
T ss_pred             --------------------------------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence                                            012345689999999974      357889999999999999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      +||+|+.||+ |+||+.....     ....+.... ...+..+.-..+...|.+++|+||++.|++++.||+|+||++
T Consensus       722 ~lasgs~D~~-v~iw~~~~~~-----~~~s~~~~~-~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        722 YIATGSETNE-VFVYHKAFPM-----PVLSYKFKT-IDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEeCCCE-EEEEECCCCC-----ceEEEeccc-CCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999999665 9999974210     000000000 000000000112235999999999999999999999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.79  E-value=1.5e-17  Score=169.25  Aligned_cols=227  Identities=17%  Similarity=0.174  Sum_probs=159.8

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECCCCce--eEEEEecCCcccCCCCccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      +.|||||.+.+|.+..+++++ +.|-.+.+.+  +.||++....|++||+.+...  +.++.+|..              
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k--------------   84 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK--------------   84 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC--------------
Confidence            579999999999999999997 4787777766  789999888999999998753  455555432              


Q ss_pred             cceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCC--CcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907          247 YGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSP--STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (787)
Q Consensus       247 ~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~--s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l  320 (787)
                       +.++++-    ||+..++.+..     ...|+...+.+...  ..+|.+.                             
T Consensus        85 -NVtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~spVn~-----------------------------  129 (311)
T KOG0315|consen   85 -NVTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSPVNT-----------------------------  129 (311)
T ss_pred             -ceEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCCcce-----------------------------
Confidence             2344443    99999887631     12344332211000  0011110                             


Q ss_pred             CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                              +.    -.++..-+..++++|.|+|||+.+.....++. .-..+|.+++..|||++|+.+-.+|+ .-||++
T Consensus       130 --------vv----lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l  196 (311)
T KOG0315|consen  130 --------VV----LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRL  196 (311)
T ss_pred             --------EE----ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEc
Confidence                    00    11111124467899999999999887666654 34578999999999999999999887 799998


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC-CCcccccccc
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS  473 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~-gg~~~~~~H~  473 (787)
                      ..+.     .      .....++.+++.  +...|..+.||||+++||++|.|.|++||+++.+ ..+..+.+|.
T Consensus       197 ~~~~-----~------~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~  258 (311)
T KOG0315|consen  197 LNHQ-----T------ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ  258 (311)
T ss_pred             cCCC-----c------cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence            6421     1      112245556542  3456999999999999999999999999999987 7777777774

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.79  E-value=1.3e-16  Score=175.63  Aligned_cols=327  Identities=14%  Similarity=0.160  Sum_probs=204.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEE-EecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLL-GYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~l-G~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      ..+|..=|..++|.-       ++..+++ |.++.+-+||-.....+.++-+  .|.|.|..|.++|+-           
T Consensus       186 ~r~HskFV~~VRysP-------DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-----------  247 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSP-------DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----------  247 (603)
T ss_pred             ccccccceeeEEECC-------CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----------
Confidence            344666788888863       3445554 5455599999865444444432  688999999999963           


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE----EEEe-cCC
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC----MVRC-SPR  203 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~----sV~~-s~~  203 (787)
                      +  -+|.+++|                                 .+++|||..+++++.++.+.+.|.    .+-+ +..
T Consensus       248 ~--~~~T~SaD---------------------------------kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~  292 (603)
T KOG0318|consen  248 T--QFLTVSAD---------------------------------KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH  292 (603)
T ss_pred             c--eEEEecCC---------------------------------ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence            2  34555543                                 589999999999999999887652    2222 457


Q ss_pred             eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee--cCcceeccccCCC
Q 003907          204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL--SNSGRLSPQNLTP  279 (787)
Q Consensus       204 ~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l--~~~g~~s~q~lt~  279 (787)
                      ++.|.+.+.|.++++.+++.++++.+|.-+             ...++++|  .+|-.++.+..+  |..|..--+.+.+
T Consensus       293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g  359 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG  359 (603)
T ss_pred             EEEEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence            788899999999999999999999887653             45678877  777777766433  2222111111110


Q ss_pred             -----CCcCCCcCCCCCceeEeeehhhhhhhh----cccce----ee------------------cccccc-cCC-----
Q 003907          280 -----SGVSPSTSPGGSSLVARYAMEHSKQFA----AGLSK----TL------------------SKYCQE-LLP-----  322 (787)
Q Consensus       280 -----~~~s~s~sp~~g~lva~~a~d~sk~la----~G~~k----tl------------------s~~~~~-l~p-----  322 (787)
                           .......+ .++.+.. +.+|....+.    .|..+    .+                  ..+-.- ++.     
T Consensus       360 ~~h~nqI~~~~~~-~~~~~~t-~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~  437 (603)
T KOG0318|consen  360 KGHTNQIKGMAAS-ESGELFT-IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV  437 (603)
T ss_pred             ccccceEEEEeec-CCCcEEE-EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence                 00000000 1111110 1111110000    00000    00                  000000 000     


Q ss_pred             ----CCC-CCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907          323 ----DGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN  395 (787)
Q Consensus       323 ----~~s-~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir  395 (787)
                          -+. ....+.++    .....+.+.+||.|+||.+....  ....+..|..+|++++|||||+|||.+...+. +-
T Consensus       438 ~~~~~~y~~s~vAv~~----~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv  512 (603)
T KOG0318|consen  438 SSIPIGYESSAVAVSP----DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VV  512 (603)
T ss_pred             eeeccccccceEEEcC----CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EE
Confidence                000 01111122    22234567899999999998755  34456789999999999999999999998665 88


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 003907          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (787)
Q Consensus       396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~  469 (787)
                      +||+...                  ....-+.+.|+++|.+|+||||.++||+||.|-+|+||+++.....+.+
T Consensus       513 ~yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i  568 (603)
T KOG0318|consen  513 LYDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII  568 (603)
T ss_pred             EEEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence            9998642                  2222334557789999999999999999999999999999877655443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.78  E-value=9.9e-17  Score=183.61  Aligned_cols=249  Identities=18%  Similarity=0.195  Sum_probs=180.9

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      +.-|..+.|-       .+++.|+.+..++ +++|+.+... +....+..|.-.|..+.|.|++           +  .|
T Consensus       159 ~~sv~~~~fs-------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-----------~--~l  218 (456)
T KOG0266|consen  159 CPSVTCVDFS-------PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-----------S--YL  218 (456)
T ss_pred             cCceEEEEEc-------CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-----------c--EE
Confidence            4445555553       2466788887766 8999995433 1444557888899999999863           1  33


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCC-CcEEEEEecC--CeEEEE-
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-  208 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdl-ktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-  208 (787)
                        +++.                               .+.+|++||+ ..+..+++++.| ..|++++|++  ++|+.| 
T Consensus       219 --~s~s-------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs  265 (456)
T KOG0266|consen  219 --LSGS-------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS  265 (456)
T ss_pred             --EEec-------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec
Confidence              2321                               1369999999 556899999866 5899999998  566665 


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp  288 (787)
                      .++.|+|||+.++++...+.+|..+             ...+++       ..+.                         
T Consensus       266 ~D~tvriWd~~~~~~~~~l~~hs~~-------------is~~~f-------~~d~-------------------------  300 (456)
T KOG0266|consen  266 DDGTVRIWDVRTGECVRKLKGHSDG-------------ISGLAF-------SPDG-------------------------  300 (456)
T ss_pred             CCCcEEEEeccCCeEEEeeeccCCc-------------eEEEEE-------CCCC-------------------------
Confidence            4668999999999999999887653             223333       2211                         


Q ss_pred             CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEec
Q 003907          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFK  366 (787)
Q Consensus       289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~  366 (787)
                        ..                                                 +..++.||.|+|||+.++.  ++..+.
T Consensus       301 --~~-------------------------------------------------l~s~s~d~~i~vwd~~~~~~~~~~~~~  329 (456)
T KOG0266|consen  301 --NL-------------------------------------------------LVSASYDGTIRVWDLETGSKLCLKLLS  329 (456)
T ss_pred             --CE-------------------------------------------------EEEcCCCccEEEEECCCCceeeeeccc
Confidence              00                                                 1123568999999999998  678888


Q ss_pred             cCCCC--eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccC
Q 003907          367 AHTSP--ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHY  442 (787)
Q Consensus       367 aH~~p--IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpD  442 (787)
                      .|..+  +++++|+|+|.+|+++..|+ .+++||+..       +          ..+.. .+++...  .+.+..++++
T Consensus       330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~~-------~----------~~~~~-~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLRS-------G----------KSVGT-YTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             CCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEccC-------C----------cceee-ecccCCcceeEecccccCC
Confidence            87666  99999999999999999955 599999953       1          12222 2333332  4666777999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                      ++++.+++.|++|++|++........+..|
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            999999999999999999986666677777

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.78  E-value=1.7e-17  Score=180.70  Aligned_cols=215  Identities=15%  Similarity=0.175  Sum_probs=148.2

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.+|+|+. .|.++.+|.++ ++|.++++|+  .+|+. +.++++.+||+.+++..+.+.-+..|-            ..
T Consensus       257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~------------lD  323 (524)
T KOG0273|consen  257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA------------LD  323 (524)
T ss_pred             cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc------------cc
Confidence            68999996 68888899765 7999999998  34554 567789999999998777776555430            00


Q ss_pred             eeEE-ccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          249 PMAV-GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       249 ~lAl-spr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                       +.+ +..-.|.++.+..+                          .|.++--       .+-.+++.++-.      ..+
T Consensus       324 -VdW~~~~~F~ts~td~~i--------------------------~V~kv~~-------~~P~~t~~GH~g------~V~  363 (524)
T KOG0273|consen  324 -VDWQSNDEFATSSTDGCI--------------------------HVCKVGE-------DRPVKTFIGHHG------EVN  363 (524)
T ss_pred             -eEEecCceEeecCCCceE--------------------------EEEEecC-------CCcceeeecccC------ceE
Confidence             111 11112222222100                          0111000       000023333221      122


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---------CCEEEEEEcCCCEEEEEe
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---------GTLLVTASVYGNNINIFR  398 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd---------G~lLATaS~dG~~IrVWd  398 (787)
                      .+-+++    .+..+++++.|++++||..........|.+|...|..+.|+|+         |..||+++.|+ ++++||
T Consensus       364 alk~n~----tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-tV~lwd  438 (524)
T KOG0273|consen  364 ALKWNP----TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-TVKLWD  438 (524)
T ss_pred             EEEECC----CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-eEEEEE
Confidence            222222    2334567899999999999999999999999999999999996         45899999966 599999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +..       |          .+++.|.+  ++..|++++|||||+|||+|+.||.||||++....
T Consensus       439 v~~-------g----------v~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  439 VES-------G----------VPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             ccC-------C----------ceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence            964       4          68888876  35689999999999999999999999999998653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=9.5e-18  Score=178.11  Aligned_cols=251  Identities=15%  Similarity=0.193  Sum_probs=189.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+++-.|..+-|..       ..-+++++++++ +++||.+ ++++.+.+.+|...|..|.+.             .+.-
T Consensus       105 ~g~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~-------------a~Gk  163 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFD-------------ASGK  163 (406)
T ss_pred             hccccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEe-------------cCcc
Confidence            44666788777753       245777777775 9999996 588888888998889888876             2322


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-g~~v~tL~f~s-~V~sV~~s~--~~LaV  207 (787)
                      +||.  +..                               +..+++||+.+ .++++.+..+. .|.+|.+-|  +.|+.
T Consensus       164 ~l~t--cSs-------------------------------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS  210 (406)
T KOG0295|consen  164 YLAT--CSS-------------------------------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS  210 (406)
T ss_pred             EEEe--cCC-------------------------------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee
Confidence            5543  311                               13489999987 56777776654 678888866  56666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. |+.|+.||+.|+.+++++..|+.+             +..+++       ..+                        
T Consensus       211 ~srD~tik~We~~tg~cv~t~~~h~ew-------------vr~v~v-------~~D------------------------  246 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYCVKTFPGHSEW-------------VRMVRV-------NQD------------------------  246 (406)
T ss_pred             cccccceeEEecccceeEEeccCchHh-------------EEEEEe-------cCC------------------------
Confidence            54 667999999999999998876653             222322       111                        


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                          |.+                                                ++++++|.+|++|-+.++++...++
T Consensus       247 ----Gti------------------------------------------------~As~s~dqtl~vW~~~t~~~k~~lR  274 (406)
T KOG0295|consen  247 ----GTI------------------------------------------------IASCSNDQTLRVWVVATKQCKAELR  274 (406)
T ss_pred             ----eeE------------------------------------------------EEecCCCceEEEEEeccchhhhhhh
Confidence                111                                                1245678899999999999999999


Q ss_pred             cCCCCeEEEEECCC----------C-----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907          367 AHTSPISALCFDPS----------G-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (787)
Q Consensus       367 aH~~pIsaLaFSpd----------G-----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~  431 (787)
                      .|+.+|-+++|-|.          |     .+|+++|.|+ +||+||+..       |          .++.+|. |+ .
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv~t-------g----------~cL~tL~-gh-d  334 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDVST-------G----------MCLFTLV-GH-D  334 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEeccC-------C----------eEEEEEe-cc-c
Confidence            99999999998763          3     5899999955 599999965       4          6888885 43 3


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ..|.+++|+|-|+||+++.+|+|+||||++...+..++..|.
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence            469999999999999999999999999999988888777664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.77  E-value=3.3e-16  Score=190.73  Aligned_cols=247  Identities=14%  Similarity=0.107  Sum_probs=168.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---Cce--eEee-eeccCcEEEEEEecCCCCCCCCCC
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNF--NELV-SKRDGPVSFLQMQPFPVKDDGCEG  125 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~---~~~--~ell-s~~dg~V~~v~~lP~P~~~~~~d~  125 (787)
                      ..|.+.|.-+.|+.       ++++|++|..+| ++|||++..   +..  ..++ -.+...|..+.+.|.         
T Consensus       480 ~~~~~~V~~i~fs~-------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------  543 (793)
T PLN00181        480 LNSSNLVCAIGFDR-------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY---------  543 (793)
T ss_pred             cCCCCcEEEEEECC-------CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC---------
Confidence            34778899899984       356788877766 999998531   100  0011 112346777776642         


Q ss_pred             ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--
Q 003907          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--  202 (787)
Q Consensus       126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--  202 (787)
                       ..  .+||..+                                 .+++|+|||+.+++.+.+++.+ ..|++|++++  
T Consensus       544 -~~--~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~  587 (793)
T PLN00181        544 -IK--SQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD  587 (793)
T ss_pred             -CC--CEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCC
Confidence             12  2554422                                 1368999999999999999755 5899999975  


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       .+|+++. ++.|++||+.+++.+.++..+..              ...+       ++....                 
T Consensus       588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------------v~~v-------~~~~~~-----------------  629 (793)
T PLN00181        588 PTLLASGSDDGSVKLWSINQGVSIGTIKTKAN--------------ICCV-------QFPSES-----------------  629 (793)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------eEEE-------EEeCCC-----------------
Confidence             4677655 56899999999887776653211              0111       121100                 


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                                |.                                                .++.+..||.|++||+.+.+
T Consensus       630 ----------g~------------------------------------------------~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        630 ----------GR------------------------------------------------SLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             ----------CC------------------------------------------------EEEEEeCCCeEEEEECCCCC
Confidence                      00                                                01234578999999998765


Q ss_pred             -EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907          361 -IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (787)
Q Consensus       361 -~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (787)
                       .+..+.+|..+|.+++|. ++.+|+|+|.|++ |+|||+.....    +       .....+..+. |+ ...|.+++|
T Consensus       652 ~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~----~-------~~~~~l~~~~-gh-~~~i~~v~~  716 (793)
T PLN00181        652 LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSIS----G-------INETPLHSFM-GH-TNVKNFVGL  716 (793)
T ss_pred             ccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcc----c-------cCCcceEEEc-CC-CCCeeEEEE
Confidence             577889999999999997 7889999999765 99999853110    0       0012445553 43 356899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC
Q 003907          440 SHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       440 SpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +|++++||+++.|++|+||+...
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999999999999999653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.77  E-value=1.5e-16  Score=164.29  Aligned_cols=226  Identities=15%  Similarity=0.207  Sum_probs=162.6

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      +++..+.|..+| +++||++ .++....|.+|...|.+++|.|+            +|.+   |+|.             
T Consensus        74 dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~d------------n~qi---vSGS-------------  124 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTD------------NRQI---VSGS-------------  124 (315)
T ss_pred             CCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCC------------Ccee---ecCC-------------
Confidence            577888888877 8999996 46888899999999999999974            3333   3331             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCC----eEEE-EeCCeEEEEECCCCceeE
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENKF  225 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~~----~LaV-~~~~~I~iwD~~T~e~l~  225 (787)
                                        .++++++||...+......+.  +.-|..|+|+|+    +|+. +-|..+++||+.+.++.+
T Consensus       125 ------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  125 ------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence                              248999999987665554444  568999999995    4444 446789999999999888


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      ++.+|..-             .+.++++|       +                            |++            
T Consensus       187 ~~~gh~~~-------------v~t~~vSp-------D----------------------------Gsl------------  206 (315)
T KOG0279|consen  187 TFIGHSGY-------------VNTVTVSP-------D----------------------------GSL------------  206 (315)
T ss_pred             cccccccc-------------EEEEEECC-------C----------------------------CCE------------
Confidence            77665431             23344432       1                            111            


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA  385 (787)
                                                          .+++..||.+.+||+..++.+..+ .|..+|++++|+|+--.|+
T Consensus       207 ------------------------------------casGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  207 ------------------------------------CASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             ------------------------------------EecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe
Confidence                                                013567899999999999987776 4678999999999987776


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc--c--cccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI--T--SATIQDICFSHYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~--~--~a~I~slaFSpDg~~LAs~S~dgTVhIw  458 (787)
                      .|-  ++.|+|||+.+..                 .+.+|+   .|.  .  ...-.+++||+||+.|.++-.|+.|++|
T Consensus       250 ~at--~~sIkIwdl~~~~-----------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  250 AAT--ATSIKIWDLESKA-----------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             ecc--CCceEEEeccchh-----------------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence            554  5569999996521                 222221   011  0  1124678999999999999999999999


Q ss_pred             eCCC
Q 003907          459 VLSP  462 (787)
Q Consensus       459 dl~~  462 (787)
                      .+..
T Consensus       311 qv~~  314 (315)
T KOG0279|consen  311 QVAK  314 (315)
T ss_pred             Eeec
Confidence            8753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.76  E-value=4.2e-17  Score=172.68  Aligned_cols=237  Identities=17%  Similarity=0.253  Sum_probs=185.2

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      +|..-|..+.||     +  ..+.|++|..++ ++|||+. ++.+.-.|.+|-..|+.|++++             .+|+
T Consensus       149 gHlgWVr~vavd-----P--~n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~-------------rHpY  207 (460)
T KOG0285|consen  149 GHLGWVRSVAVD-----P--GNEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSK-------------RHPY  207 (460)
T ss_pred             hccceEEEEeeC-----C--CceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecc-------------cCce
Confidence            355556666665     3  267999999886 8999995 6888888999999999999874             5788


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL  209 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~  209 (787)
                      |.. +++                                ++.|+-|||..++.|+.+-.+ +.|++++.-|  ++|+++.
T Consensus       208 lFs-~ge--------------------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g  254 (460)
T KOG0285|consen  208 LFS-AGE--------------------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG  254 (460)
T ss_pred             EEE-ecC--------------------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC
Confidence            754 333                                268999999999999888655 7999999997  6777765


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (787)
Q Consensus       210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp  288 (787)
                       |..+++||++|-...+++.+|.+|.             ..+.+      -+.+.                         
T Consensus       255 rDst~RvWDiRtr~~V~~l~GH~~~V-------------~~V~~------~~~dp-------------------------  290 (460)
T KOG0285|consen  255 RDSTIRVWDIRTRASVHVLSGHTNPV-------------ASVMC------QPTDP-------------------------  290 (460)
T ss_pred             CcceEEEeeecccceEEEecCCCCcc-------------eeEEe------ecCCC-------------------------
Confidence             5579999999999999999888751             11111      11110                         


Q ss_pred             CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003907          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (787)
Q Consensus       289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH  368 (787)
                                                                          ++.+++.|++|++||+..++...++..|
T Consensus       291 ----------------------------------------------------qvit~S~D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  291 ----------------------------------------------------QVITGSHDSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             ----------------------------------------------------ceEEecCCceEEEeeeccCceeEeeecc
Confidence                                                                1224567999999999999999999999


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs  448 (787)
                      ...|.|++.+|.-.++|++|.| . |+-|++ |.      |          ..+..+. | +++.|.+++-..|| ++++
T Consensus       319 kksvral~lhP~e~~fASas~d-n-ik~w~~-p~------g----------~f~~nls-g-h~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  319 KKSVRALCLHPKENLFASASPD-N-IKQWKL-PE------G----------EFLQNLS-G-HNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             cceeeEEecCCchhhhhccCCc-c-ceeccC-Cc------c----------chhhccc-c-ccceeeeeeeccCc-eEEE
Confidence            9999999999999999999984 3 899998 32      3          2344443 3 45679999999987 6789


Q ss_pred             EeCCCeEEEEeCCC
Q 003907          449 VSSKGTCHVFVLSP  462 (787)
Q Consensus       449 ~S~dgTVhIwdl~~  462 (787)
                      |+++|++.+||...
T Consensus       377 G~dng~~~fwdwks  390 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKS  390 (460)
T ss_pred             cCCceEEEEEecCc
Confidence            99999999999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.76  E-value=3.5e-18  Score=180.01  Aligned_cols=237  Identities=18%  Similarity=0.228  Sum_probs=172.5

Q ss_pred             eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907           46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      ..|+-+. ...+.|+...+|.         ..++.|.++ .++|||..+ -.+..++.+|.|.|-|+++-          
T Consensus       188 ~rinc~S-e~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd----------  246 (499)
T KOG0281|consen  188 QRINCRS-ENSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD----------  246 (499)
T ss_pred             eeecCCc-ccCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc----------
Confidence            4454422 3556788888872         357788875 699999964 56788999999999999965          


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR  203 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~  203 (787)
                          .| +|  ++|.                               ++.||++||..+|+++.++-++ ..|+.++|+..
T Consensus       247 ----~r-vi--isGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng  288 (499)
T KOG0281|consen  247 ----ER-VI--VSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG  288 (499)
T ss_pred             ----ce-EE--EecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCC
Confidence                22 33  4432                               2469999999999999999776 58999999999


Q ss_pred             eEEEEeCC-eEEEEECCCCce---eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          204 IVAVGLAT-QIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       204 ~LaV~~~~-~I~iwD~~T~e~---l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                      +++++..+ .|.+||+.....   .+.|.+|-.             .++.+.++.+                        
T Consensus       289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-------------aVNvVdfd~k------------------------  331 (499)
T KOG0281|consen  289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-------------AVNVVDFDDK------------------------  331 (499)
T ss_pred             EEEEecCCceeEEEeccCchHHHHHHHHhhhhh-------------heeeeccccc------------------------
Confidence            99987755 699999654321   000111100             0011111111                        


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                                                                   .+.+++.|.+|++|++.+.
T Consensus       332 -------------------------------------------------------------yIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  332 -------------------------------------------------------------YIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             -------------------------------------------------------------eEEEecCCceEEEEeccce
Confidence                                                                         1234567889999999999


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (787)
                      +.+.++.+|...|.|+.+  .|+++++||.| .+||+||+..       |          .++..|. |+ ..-|.+|.|
T Consensus       351 efvRtl~gHkRGIAClQY--r~rlvVSGSSD-ntIRlwdi~~-------G----------~cLRvLe-GH-EeLvRciRF  408 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSD-NTIRLWDIEC-------G----------ACLRVLE-GH-EELVRCIRF  408 (499)
T ss_pred             eeehhhhcccccceehhc--cCeEEEecCCC-ceEEEEeccc-------c----------HHHHHHh-ch-HHhhhheee
Confidence            999999999999999987  68999999994 5699999964       4          4555554 43 245899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          440 SHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       440 SpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .  .+.|++|..||+|+|||+...
T Consensus       409 d--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  409 D--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             c--CceeeeccccceEEEEecccc
Confidence            5  578999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=2.3e-16  Score=179.44  Aligned_cols=250  Identities=17%  Similarity=0.189  Sum_probs=172.6

Q ss_pred             CCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907           72 SVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (787)
Q Consensus        72 ~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~  150 (787)
                      +.+++++++|..+| ++|||.. .+-|.-+++.|...|..+++...             ...|+..+             
T Consensus       359 SpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssS-------------  411 (893)
T KOG0291|consen  359 SPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSS-------------  411 (893)
T ss_pred             CCCCcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEec-------------CCEEEEee-------------
Confidence            35799999999998 9999985 57789999999999999998732             12333222             


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE--EEEec--CCeEEEEeCC--eEEEEECCCCcee
Q 003907          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC--MVRCS--PRIVAVGLAT--QIYCFDALTLENK  224 (787)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~--sV~~s--~~~LaV~~~~--~I~iwD~~T~e~l  224 (787)
                                          -+++||.||++....-+++..+.++.  .|+..  ..++++|..+  .|++|+++||+++
T Consensus       412 --------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  412 --------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             --------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence                                24799999999999999999998773  44555  4666666544  4999999999999


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~  304 (787)
                      ..|.+|..|             +..++++|                                  .+..            
T Consensus       472 DiLsGHEgP-------------Vs~l~f~~----------------------------------~~~~------------  492 (893)
T KOG0291|consen  472 DILSGHEGP-------------VSGLSFSP----------------------------------DGSL------------  492 (893)
T ss_pred             ehhcCCCCc-------------ceeeEEcc----------------------------------ccCe------------
Confidence            999998876             12233322                                  1111            


Q ss_pred             hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCE
Q 003907          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTL  383 (787)
Q Consensus       305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~l  383 (787)
                                                           +++++-|.+|++||+-... .+.++ .+.+.+.+++|+|||+-
T Consensus       493 -------------------------------------LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~e  534 (893)
T KOG0291|consen  493 -------------------------------------LASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKE  534 (893)
T ss_pred             -------------------------------------EEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCe
Confidence                                                 1234457899999987653 33333 46678999999999999


Q ss_pred             EEEEEcCCCEEEEEeCCCCccc-CCCCCCccccCCcceEEEE-E--ecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          384 LVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSHVHLYK-L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       384 LATaS~dG~~IrVWdi~~~~~~-~~~g~~~~~~~~s~~~l~~-l--~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      ||.+..||. |.+||+...... +-.|..  |..+. +...+ +  +.......++.|++|+||++|.+|+....|.||+
T Consensus       535 laVaTldgq-Itf~d~~~~~q~~~Idgrk--D~~~g-R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  535 LAVATLDGQ-ITFFDIKEAVQVGSIDGRK--DLSGG-RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             EEEEEecce-EEEEEhhhceeeccccchh--hcccc-ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            999999775 999998653211 000100  00000 11101 1  0001112489999999999999999999999999


Q ss_pred             CCCCCCcccc
Q 003907          460 LSPFGGDSGF  469 (787)
Q Consensus       460 l~~~gg~~~~  469 (787)
                      +...--...+
T Consensus       611 v~~~vllkkf  620 (893)
T KOG0291|consen  611 VPEGVLLKKF  620 (893)
T ss_pred             CchhheeeeE
Confidence            9764333333

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=5.7e-17  Score=184.19  Aligned_cols=225  Identities=20%  Similarity=0.287  Sum_probs=177.7

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      .+++++|+++| ++|||+.. ..+.|+...|+|.+..++.+|+..            -+ +.++                
T Consensus       424 d~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~------------g~-vT~s----------------  473 (888)
T KOG0306|consen  424 DRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNK------------GF-VTGS----------------  473 (888)
T ss_pred             CceEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCC------------ce-EEec----------------
Confidence            57899999998 99999954 556788889999999999998631            13 2222                


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFD  217 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-----g~~--------v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD  217 (787)
                                       .+++|+|||++-     |..        -.+|++...|++|+++|  ++|||++ ++++++|.
T Consensus       474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF  536 (888)
T ss_pred             -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence                             247999999752     111        24677888999999997  8999986 67899999


Q ss_pred             CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907          218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (787)
Q Consensus       218 ~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~  297 (787)
                      +.|++...+|.+|..|             +..|.++|     .+                              .     
T Consensus       537 lDtlKFflsLYGHkLP-------------V~smDIS~-----DS------------------------------k-----  563 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLP-------------VLSMDISP-----DS------------------------------K-----  563 (888)
T ss_pred             ecceeeeeeecccccc-------------eeEEeccC-----Cc------------------------------C-----
Confidence            9999999999999887             23444432     00                              0     


Q ss_pred             ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF  377 (787)
Q Consensus       298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF  377 (787)
                                                                 -+.+++.|..|+||-+.-|.+-..|-||+..|.++.|
T Consensus       564 -------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  564 -------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF  600 (888)
T ss_pred             -------------------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence                                                       0123456889999999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (787)
Q Consensus       378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI  457 (787)
                      =|+..++.||+.|+. |+-||-..                 ..++.+|. | |...|++++-+|+|.+++++|.|.+|++
T Consensus       601 ~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~-H~~ev~cLav~~~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-G-HHSEVWCLAVSPNGSFVVSSSHDKSIRL  660 (888)
T ss_pred             cccceeEEEecCcce-EEeechhh-----------------hhhheeec-c-chheeeeeEEcCCCCeEEeccCCceeEe
Confidence            999999999999765 99999532                 24666775 3 3467999999999999999999999999


Q ss_pred             EeCCC
Q 003907          458 FVLSP  462 (787)
Q Consensus       458 wdl~~  462 (787)
                      |....
T Consensus       661 wE~td  665 (888)
T KOG0306|consen  661 WERTD  665 (888)
T ss_pred             eeccC
Confidence            98654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.75  E-value=1.5e-16  Score=182.00  Aligned_cols=189  Identities=22%  Similarity=0.298  Sum_probs=146.1

Q ss_pred             CCEEEEEECCCCe--EEEEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEEC-CCCceeEEEEecCCcccCCCCccccc
Q 003907          172 PTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN  244 (787)
Q Consensus       172 p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~-~T~e~l~tl~t~p~p~~~~~~~~~~~  244 (787)
                      ++++++|++.+++  ..+++. +...|.+++|++  ++|+.+. |.+|+|||+ ..+..++++.+|+.+           
T Consensus       180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-----------  248 (456)
T KOG0266|consen  180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-----------  248 (456)
T ss_pred             CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence            4689999998777  677764 445899999988  5677655 568999999 566888999988774           


Q ss_pred             cccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       245 ~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                        ...++|.|       .                           + .+                               
T Consensus       249 --v~~~~f~p-------~---------------------------g-~~-------------------------------  260 (456)
T KOG0266|consen  249 --VTSVAFSP-------D---------------------------G-NL-------------------------------  260 (456)
T ss_pred             --eEEEEecC-------C---------------------------C-CE-------------------------------
Confidence              22334322       1                           0 11                               


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM  404 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~  404 (787)
                                       +.+++.|++|+|||+.+++++..|.+|.++|++++|+++|.+|+++|.|+ .|+|||+..   
T Consensus       261 -----------------i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~---  319 (456)
T KOG0266|consen  261 -----------------LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET---  319 (456)
T ss_pred             -----------------EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC---
Confidence                             12456789999999999999999999999999999999999999998866 599999964   


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          405 RSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                          +.        ..++..+. +.... .+++++|+|++++|++++.|+++++|++...........|.
T Consensus       320 ----~~--------~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  320 ----GS--------KLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             ----Cc--------eeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence                20        00233443 33334 68999999999999999999999999999877777777774

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=6.7e-17  Score=183.63  Aligned_cols=263  Identities=15%  Similarity=0.173  Sum_probs=181.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .-+..|+|+-.+|=    ++  .-+.|+++++.+ +|+|++.. ..+. ++.+|+..|-.+...            ... 
T Consensus       319 ivG~ndEI~Dm~~l----G~--e~~~laVATNs~~lr~y~~~~-~~c~-ii~GH~e~vlSL~~~------------~~g-  377 (775)
T KOG0319|consen  319 IVGYNDEILDMKFL----GP--EESHLAVATNSPELRLYTLPT-SYCQ-IIPGHTEAVLSLDVW------------SSG-  377 (775)
T ss_pred             hcCCchhheeeeec----CC--ccceEEEEeCCCceEEEecCC-CceE-EEeCchhheeeeeec------------ccC-
Confidence            34456667766662    22  346899999876 99999844 4454 999999999888732            222 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeC-CCcEEEEEecC---
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRF-RSSVCMVRCSP---  202 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~----~v~tL~f-~s~V~sV~~s~---  202 (787)
                      -||+.  |.                               .+++|+||-+..+.    ++..... .+.|.+|+++.   
T Consensus       378 ~llat--~s-------------------------------KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  378 DLLAT--GS-------------------------------KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             cEEEE--ec-------------------------------CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence            25543  31                               24799999773332    2333333 45899999976   


Q ss_pred             CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907          203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       203 ~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      .+++ ++.|..|++|++..-+.     +.+                 +.-+-.++.+-+-                    
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~-----~~~-----------------~~~~~~~~t~~aH--------------------  462 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKE-----TAF-----------------PIVLTCRYTERAH--------------------  462 (775)
T ss_pred             cEEEEecCCceEEEecCCCccc-----ccc-----------------cceehhhHHHHhh--------------------
Confidence            4555 45677899999865221     000                 0011001100000                    


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                                               +...+....++    +..-++++++|.+++||++...+.
T Consensus       463 -----------------------------------------dKdIN~Vaia~----ndkLiAT~SqDktaKiW~le~~~l  497 (775)
T KOG0319|consen  463 -----------------------------------------DKDINCVAIAP----NDKLIATGSQDKTAKIWDLEQLRL  497 (775)
T ss_pred             -----------------------------------------cccccceEecC----CCceEEecccccceeeecccCceE
Confidence                                                     00011111111    111245678899999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      +.+|.+|+..|.++.|+|..++|||+|.|. +|+||.+.+       .          .++.+|. |++ +.|..++|-.
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~-TvKIW~is~-------f----------SClkT~e-GH~-~aVlra~F~~  557 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDK-TVKIWSIST-------F----------SCLKTFE-GHT-SAVLRASFIR  557 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCc-eEEEEEecc-------c----------eeeeeec-Ccc-ceeEeeeeee
Confidence            999999999999999999999999999955 599999965       2          4787875 544 5699999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                      +|+.|.+++.||-++||++++..++.++..|+..
T Consensus       558 ~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  558 NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             CCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence            9999999999999999999999999999999754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.7e-16  Score=182.52  Aligned_cols=274  Identities=16%  Similarity=0.208  Sum_probs=186.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      +|....+|.-..|.     +  .+-.++++--+| ||+||. -.+.+.+-+..|||||+.|.|-|             .+
T Consensus         5 fEskSsRvKglsFH-----P--~rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~-------------~q   63 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFH-----P--KRPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHP-------------TQ   63 (1202)
T ss_pred             hhcccccccceecC-----C--CCCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecC-------------CC
Confidence            45556677777786     2  366888888888 899999 45778888999999999998765             46


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~--~LaV  207 (787)
                      ||.  |+|++                               +-+|++|+.++.+++-+|..| .-|+.+.|.+.  .++.
T Consensus        64 plF--VSGGD-------------------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS  110 (1202)
T KOG0292|consen   64 PLF--VSGGD-------------------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS  110 (1202)
T ss_pred             CeE--EecCC-------------------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence            776  45433                               259999999999999999866 68999999883  5555


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce-eEEcc--ceEEEecCCceecCcceeccccCCCCCcC
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP-MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~-lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      +. |++|+||+-++.+++..+.+|..              |.- ..|.|  ..+++++-+.     .+..|+.       
T Consensus       111 ASDDQTIrIWNwqsr~~iavltGHnH--------------YVMcAqFhptEDlIVSaSLDQ-----TVRVWDi-------  164 (1202)
T KOG0292|consen  111 ASDDQTIRIWNWQSRKCIAVLTGHNH--------------YVMCAQFHPTEDLIVSASLDQ-----TVRVWDI-------  164 (1202)
T ss_pred             ccCCCeEEEEeccCCceEEEEecCce--------------EEEeeccCCccceEEEecccc-----eEEEEee-------
Confidence            55 55699999999999999988754              211 23445  4555554321     1222432       


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc---cccCCCceEEEEECCCCc
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~---~s~~~dG~V~IwDl~s~~  360 (787)
                                             +|+.|+       ..+++     +...  .+.+.++   ..+..|-.          
T Consensus       165 -----------------------sGLRkk-------~~~pg-----~~e~--~~~~~~~~~dLfg~~DaV----------  197 (1202)
T KOG0292|consen  165 -----------------------SGLRKK-------NKAPG-----SLED--QMRGQQGNSDLFGQTDAV----------  197 (1202)
T ss_pred             -----------------------cchhcc-------CCCCC-----Cchh--hhhccccchhhcCCcCee----------
Confidence                                   111100       00000     0000  0000000   01112222          


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      +...+.+|+..|+.++|+|.--++++|++ |+.|++|.....               ..+.+-++ ||+. ..|.++-|.
T Consensus       198 VK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmnet---------------KaWEvDtc-rgH~-nnVssvlfh  259 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNET---------------KAWEVDTC-RGHY-NNVSSVLFH  259 (1202)
T ss_pred             eeeeecccccccceEEecCCcceEEecCC-cceeeEEEeccc---------------cceeehhh-hccc-CCcceEEec
Confidence            23457899999999999999999999988 778999998431               11333333 6754 469999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~  470 (787)
                      |....|.+.|.|++|+|||++...+..+|+
T Consensus       260 p~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  260 PHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             CccceeEecCCCccEEEEecccccceeeee
Confidence            999999999999999999999877776664

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.73  E-value=1.5e-16  Score=182.33  Aligned_cols=184  Identities=14%  Similarity=0.149  Sum_probs=141.2

Q ss_pred             EEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          175 VRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       175 VrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      +..-|..+.....+|-.| ++|+.++|+|  ++|+.+.+ ..|++|.+.|..++-...+|-.|             +.-+
T Consensus       433 ~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV  499 (707)
T KOG0263|consen  433 VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDV  499 (707)
T ss_pred             hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeE
Confidence            444455444445555444 6999999998  67777765 57999999998877776666554             1223


Q ss_pred             EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (787)
Q Consensus       251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s  330 (787)
                      .|+|+                                                                           
T Consensus       500 ~F~P~---------------------------------------------------------------------------  504 (707)
T KOG0263|consen  500 QFAPR---------------------------------------------------------------------------  504 (707)
T ss_pred             EecCC---------------------------------------------------------------------------
Confidence            33332                                                                           


Q ss_pred             cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                              +..+++++.|++.++|......+++.|.+|-+.|.|++|+|+..|+||+|. ++++|+||+.+       | 
T Consensus       505 --------GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~-------G-  567 (707)
T KOG0263|consen  505 --------GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVST-------G-  567 (707)
T ss_pred             --------ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEcCC-------C-
Confidence                    112334567889999999999999999999999999999999999999998 66799999976       4 


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                               ..+..| +| |.+.|.+|+|||+|+|||+|+.||.|+|||+....-...+.+|+.
T Consensus       568 ---------~~VRiF-~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~  620 (707)
T KOG0263|consen  568 ---------NSVRIF-TG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG  620 (707)
T ss_pred             ---------cEEEEe-cC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC
Confidence                     233333 57 457899999999999999999999999999987666667888853

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.72  E-value=1.5e-16  Score=168.46  Aligned_cols=216  Identities=15%  Similarity=0.181  Sum_probs=159.2

Q ss_pred             CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (787)
Q Consensus        95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (787)
                      -++..++++|-|+|++|.+-|.            + ..++.  +.                               .+++
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~------------n-~wf~t--gs-------------------------------~Drt  174 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPG------------N-EWFAT--GS-------------------------------ADRT  174 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCC------------c-eeEEe--cC-------------------------------CCce
Confidence            3456778899999999999873            1 25533  21                               2479


Q ss_pred             EEEEECCCCeEEEEEeC-CCcEEEEEecCC---eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       175 VrlWdlktg~~v~tL~f-~s~V~sV~~s~~---~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      ++|||+.+|++..+|.. -+.|..|+++++   ++.++.+.+|+|||+..-+.+....+|-..             +-.+
T Consensus       175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~-------------V~~L  241 (460)
T KOG0285|consen  175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG-------------VYCL  241 (460)
T ss_pred             eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------eEEE
Confidence            99999999999999984 479999999873   455566778999999887765554444321             1122


Q ss_pred             EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (787)
Q Consensus       251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s  330 (787)
                      ++.|      ..+                                                                   
T Consensus       242 ~lhP------Tld-------------------------------------------------------------------  248 (460)
T KOG0285|consen  242 DLHP------TLD-------------------------------------------------------------------  248 (460)
T ss_pred             eccc------cce-------------------------------------------------------------------
Confidence            2211      100                                                                   


Q ss_pred             cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                                .+.+++.|.+++|||+++...+..|.+|+.+|..+.|.|-.-.++|||.|++ ||+||+..       | 
T Consensus       249 ----------vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~a-------g-  309 (460)
T KOG0285|consen  249 ----------VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLRA-------G-  309 (460)
T ss_pred             ----------eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeecc-------C-
Confidence                      0124456889999999999999999999999999999998888999999665 99999964       3 


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                               +-...+.  ++...|.+++..|+-..+|++|.|. ++-|++....-..++..|+
T Consensus       310 ---------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  310 ---------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             ---------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc
Confidence                     2333443  2334699999999999999998875 8899987655556677775

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.72  E-value=2.3e-15  Score=156.40  Aligned_cols=223  Identities=13%  Similarity=0.111  Sum_probs=170.3

Q ss_pred             CCeEEEEEecCc-EEEEEccCC--C---ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDA--S---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~--~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~  147 (787)
                      .++.+++|.-+- --||++...  .   .+.+.|..|.|-+++.+++++-              .|+.  +     +|  
T Consensus       108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~ilT--~-----SG--  164 (343)
T KOG0286|consen  108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HILT--G-----SG--  164 (343)
T ss_pred             CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ceEe--c-----CC--
Confidence            478888887655 689999632  1   3455688899999999999531              2333  2     11  


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE-EeCCeEEEEECCCCc
Q 003907          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV-GLATQIYCFDALTLE  222 (787)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e  222 (787)
                                              +.|..+||+.+|+.+..+..| +-|.++++.|   +.++. +.+...++||++.+.
T Consensus       165 ------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  165 ------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             ------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence                                    258999999999999999866 5899999977   66666 457789999999999


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s  302 (787)
                      +.+++.+|..-             .+.+.|-|.-                                              
T Consensus       221 c~qtF~ghesD-------------INsv~ffP~G----------------------------------------------  241 (343)
T KOG0286|consen  221 CVQTFEGHESD-------------INSVRFFPSG----------------------------------------------  241 (343)
T ss_pred             eeEeecccccc-------------cceEEEccCC----------------------------------------------
Confidence            99999887652             2344442210                                              


Q ss_pred             hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCC
Q 003907          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPS  380 (787)
Q Consensus       303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H~~pIsaLaFSpd  380 (787)
                                                           ..+++++.|+++++||++..+.+..+..  -..+|++++||.+
T Consensus       242 -------------------------------------~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  242 -------------------------------------DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             -------------------------------------CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence                                                 0123567799999999999998888863  2458999999999


Q ss_pred             CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       381 G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      |++|..+-.|. .+.|||...       +          ++.-.|. |+ ...|.+|..+|||.-|+++|-|.+++||.
T Consensus       285 GRlLfagy~d~-~c~vWDtlk-------~----------e~vg~L~-GH-eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  285 GRLLFAGYDDF-TCNVWDTLK-------G----------ERVGVLA-GH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccEEEeeecCC-ceeEeeccc-------c----------ceEEEee-cc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999887755 599999864       2          4555664 54 35799999999999999999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.71  E-value=7.5e-16  Score=158.00  Aligned_cols=242  Identities=18%  Similarity=0.200  Sum_probs=173.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..++..+|.-+.|+-       ++.-|+.|.-++ +.||+++...-..++ ..+|.+.|..+.+.|.            .
T Consensus        16 ~~~~~~~v~Sv~wn~-------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------~   76 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNC-------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------H   76 (313)
T ss_pred             hhhhhhcceEEEEcc-------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------C
Confidence            566788899999974       366788888776 799999875433333 4566678888887763            2


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV  207 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV  207 (787)
                      .++++++++|                                 ++|++||.+++++++.+.-...=..+.++|  ..+++
T Consensus        77 ~d~~atas~d---------------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~  123 (313)
T KOG1407|consen   77 PDLFATASGD---------------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV  123 (313)
T ss_pred             CcceEEecCC---------------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence            3477765532                                 689999999999999998887666778887  56666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. ++.|.++|+++.+...+..   .+      + .    .+.+++.      -+++..                     
T Consensus       124 ~~kdD~it~id~r~~~~~~~~~---~~------~-e----~ne~~w~------~~nd~F---------------------  162 (313)
T KOG1407|consen  124 GNKDDRITFIDARTYKIVNEEQ---FK------F-E----VNEISWN------NSNDLF---------------------  162 (313)
T ss_pred             ecCcccEEEEEecccceeehhc---cc------c-e----eeeeeec------CCCCEE---------------------
Confidence            55 6689999998876433321   11      0 0    0112210      000000                     


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                                                              .-....|.|.|......+++..|+
T Consensus       163 --------------------------------------------------------flt~GlG~v~ILsypsLkpv~si~  186 (313)
T KOG1407|consen  163 --------------------------------------------------------FLTNGLGCVEILSYPSLKPVQSIK  186 (313)
T ss_pred             --------------------------------------------------------EEecCCceEEEEeccccccccccc
Confidence                                                                    001124789999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      +|....-||.|+|+|++||+||. +-.+-+||+...                 .++..+.|-  ...|..|+||.||++|
T Consensus       187 AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDEL-----------------ICERCISRL--DWPVRTLSFSHDGRML  246 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccc-cceeeccChhHh-----------------hhheeeccc--cCceEEEEeccCccee
Confidence            99999999999999999999999 557999998532                 244444442  2469999999999999


Q ss_pred             EEEeCCCeEEEEeCCC
Q 003907          447 AIVSSKGTCHVFVLSP  462 (787)
Q Consensus       447 As~S~dgTVhIwdl~~  462 (787)
                      |++|.|..|-|=.+++
T Consensus       247 ASaSEDh~IDIA~vet  262 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVET  262 (313)
T ss_pred             eccCccceEEeEeccc
Confidence            9999998888766665

>PTZ00421 coronin; Provisional

Probab=99.71  E-value=6.6e-15  Score=169.65  Aligned_cols=222  Identities=14%  Similarity=0.118  Sum_probs=151.4

Q ss_pred             CcEEEEEccCCCceeE---eeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCC
Q 003907           84 NGFQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM  160 (787)
Q Consensus        84 ~G~qVWdv~~~~~~~e---lls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~  160 (787)
                      +|+.|+.++..|....   ++.+|.++|..+++.|          |...  +||..+ +                     
T Consensus        51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP----------~d~~--~LaSgS-~---------------------   96 (493)
T PTZ00421         51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNP----------FDPQ--KLFTAS-E---------------------   96 (493)
T ss_pred             CceEEeeccccccCCCCCceEeCCCCCEEEEEEcC----------CCCC--EEEEEe-C---------------------
Confidence            3455555555554433   5778999999999987          2222  565422 1                     


Q ss_pred             cCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeCC-CcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEE
Q 003907          161 MDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRFR-SSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       161 ~~~~~~~~~~~p~tVrlWdlktg-------~~v~tL~f~-s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~  228 (787)
                                 +++|++||+.++       +.+.++..+ ..|..|+|++   ++|+++. ++.|+|||+.+++.+.++.
T Consensus        97 -----------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         97 -----------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             -----------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence                       368999999765       346677655 5899999987   4677654 6789999999998877776


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      .|..+             ...++++|       +.                            .                
T Consensus       166 ~h~~~-------------V~sla~sp-------dG----------------------------~----------------  181 (493)
T PTZ00421        166 CHSDQ-------------ITSLEWNL-------DG----------------------------S----------------  181 (493)
T ss_pred             CCCCc-------------eEEEEEEC-------CC----------------------------C----------------
Confidence            65542             22333322       10                            0                


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEE
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTA  387 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pI-saLaFSpdG~lLATa  387 (787)
                                                      .++++..||+|+|||+++++.+..+.+|.+.+ ..+.|.+++.+|+|+
T Consensus       182 --------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        182 --------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             --------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence                                            01234568999999999999999999998754 567899998888876


Q ss_pred             Ec---CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907          388 SV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       388 S~---dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~  463 (787)
                      +.   .++.|+|||++..      .          ..+.... ......+....|++|+++|++++ .|++|++|++...
T Consensus       230 G~s~s~Dr~VklWDlr~~------~----------~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKM------A----------SPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             ecCCCCCCeEEEEeCCCC------C----------CceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            53   2456999998531      1          1222221 11223466678999999999988 5999999999753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=1.3e-15  Score=166.91  Aligned_cols=236  Identities=19%  Similarity=0.253  Sum_probs=168.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..--++.|.-+.|-+       ++++|+.|...| +||||. ........+..|..||..++|.|.           ++ 
T Consensus        64 ~srFk~~v~s~~fR~-------DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~-----------d~-  123 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRS-------DGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQ-----------DN-  123 (487)
T ss_pred             HHhhccceeEEEeec-------CCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEeccc-----------CC-
Confidence            344678888888865       488999999988 899995 444455667889999999999863           22 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~La  206 (787)
                       .++ ++|++                               +.++++||+.+...+.++..+ ..|.+.++++   .+++
T Consensus       124 -t~l-~s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen  124 -TML-VSGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             -eEE-EecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence             333 34543                               369999999998876567655 5899999987   3677


Q ss_pred             EE-eCCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcC
Q 003907          207 VG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       207 V~-~~~~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      +| +|+.|++||+++. ....++. |..|.            -..+++.+ ..+|.+                       
T Consensus       171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~lpsgs~iasA-----------------------  214 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLALPSGSLIASA-----------------------  214 (487)
T ss_pred             ecCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEcCCCCEEEEc-----------------------
Confidence            65 5778999998876 3334433 22220            01233321 111111                       


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII  362 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v  362 (787)
                                                                                     ....|+|||+.+| +.+
T Consensus       215 ---------------------------------------------------------------gGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  215 ---------------------------------------------------------------GGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ---------------------------------------------------------------CCCeEEEEEecCCceeh
Confidence                                                                           1236999999955 555


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      ..+..|...|+||++..+++.|.|+|-|++ ++|||+...                 ..++.+.   -.+.|.+|+.|||
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~-----------------Kvv~s~~---~~~pvLsiavs~d  290 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY-----------------KVVHSWK---YPGPVLSIAVSPD  290 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce-----------------EEEEeee---cccceeeEEecCC
Confidence            566669999999999999999999999887 999997431                 2333332   2357999999999


Q ss_pred             CCEEEEEeCCCeEEEEeC
Q 003907          443 SQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl  460 (787)
                      ++.+++|-.+|.+-+-+.
T Consensus       291 d~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  291 DQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             CceEEEecccceeeeehh
Confidence            999999999999877643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.71  E-value=1.5e-16  Score=162.10  Aligned_cols=198  Identities=21%  Similarity=0.306  Sum_probs=151.2

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      -.||--|.-+.|++    |   -+.|++|...- +||||++....-.+-+++|.|.|+.+.++-           .++  
T Consensus        97 f~hkhivk~~af~~----d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----------eD~--  156 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQ----D---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----------EDK--  156 (334)
T ss_pred             hhhhheeeeEEecc----c---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----------cCc--
Confidence            34778899999987    3   34677776655 799999776655666889999999998872           222  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL  209 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~  209 (787)
                      .++. +.+                                +++||+||.++|+.+++|+|+++|.++..++  ++|.++.
T Consensus       157 ~iLS-Sad--------------------------------d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~  203 (334)
T KOG0278|consen  157 CILS-SAD--------------------------------DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY  203 (334)
T ss_pred             eEEe-ecc--------------------------------CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence            3332 222                                3799999999999999999999999988877  7888999


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~  289 (787)
                      ...|.+||+.++++++...   .|.         +  +...+|.|                                  .
T Consensus       204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P----------------------------------~  235 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHP----------------------------------K  235 (334)
T ss_pred             CceeEEeccccccceeecc---Ccc---------c--cccccccC----------------------------------C
Confidence            8999999999998766554   220         0  01111111                                  1


Q ss_pred             CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-ccC
Q 003907          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAH  368 (787)
Q Consensus       290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-~aH  368 (787)
                      .+.+                                                 ..+..|+.+..||..++..+..+ ++|
T Consensus       236 k~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkgh  266 (334)
T KOG0278|consen  236 KEFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKGH  266 (334)
T ss_pred             CceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccCC
Confidence            1111                                                 12457889999999999988886 899


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      -+||.|+.|+|||.+-|++|+||+ ||||.+.+
T Consensus       267 ~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~  298 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP  298 (334)
T ss_pred             CCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence            999999999999999999999886 99999865

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.71  E-value=1.5e-15  Score=175.87  Aligned_cols=242  Identities=19%  Similarity=0.189  Sum_probs=185.0

Q ss_pred             cCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907           50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        50 ~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      ...++|++.|--..|.+       ....|++|..+ .++|||+ ..|++..++.+|.+.|+++.+.+             
T Consensus       243 ~~l~GH~g~V~~l~~~~-------~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~-------------  301 (537)
T KOG0274|consen  243 TRLVGHFGGVWGLAFPS-------GGDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP-------------  301 (537)
T ss_pred             eeccCCCCCceeEEEec-------CCCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC-------------
Confidence            34788888888777764       13478888865 6999997 56999999999999999998774             


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecCCeEEE
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAV  207 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~~~LaV  207 (787)
                         .+. ++|     +                          -|++|++|++.++.+++++. +..+|.+|.++..+|++
T Consensus       302 ---~~~-~sg-----s--------------------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvs  346 (537)
T KOG0274|consen  302 ---FLL-VSG-----S--------------------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVS  346 (537)
T ss_pred             ---ceE-eec-----c--------------------------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEE
Confidence               222 232     1                          24799999999999999999 67899999999987777


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. +..|.+||+.++++++++.+|...             +..+.+       .+...                      
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~-------------V~sl~~-------~~~~~----------------------  384 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGR-------------VYSLIV-------DSENR----------------------  384 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcce-------------EEEEEe-------cCcce----------------------
Confidence            54 567999999999999999987663             112222       21000                      


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF  365 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~  365 (787)
                                                                             ..+++.|++|++||+.++ +++.++
T Consensus       385 -------------------------------------------------------~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  385 -------------------------------------------------------LLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             -------------------------------------------------------EEeeeeccceEeecCCchhhhhhhh
Confidence                                                                   012356789999999999 999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      .+|..-+..+.+  .+++|++++.|++ |++||+..       +          .++.++... +...|..+++.  ...
T Consensus       410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~  466 (537)
T KOG0274|consen  410 QGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEE  466 (537)
T ss_pred             cCCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cce
Confidence            999998876665  6789999999775 99999865       2          366666532 33568888887  467


Q ss_pred             EEEEeCCCeEEEEeCCCCCCcc
Q 003907          446 IAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      +++++.|+++++||+.......
T Consensus       467 il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             EEEEecCCeeEEEecccCchhh
Confidence            8999999999999998754433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.71  E-value=9.7e-17  Score=172.39  Aligned_cols=270  Identities=14%  Similarity=0.173  Sum_probs=187.0

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .++-|++|++.| |-+|+.. .=++.-++..||.+|++|+++++             ...+  +++|.            
T Consensus       107 eGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~-------------g~wm--iSgD~------------  158 (464)
T KOG0284|consen  107 EGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHN-------------GTWM--ISGDK------------  158 (464)
T ss_pred             CCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccC-------------CCEE--EEcCC------------
Confidence            366788888877 9999984 44566788999999999999954             2244  45543            


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV  227 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl  227 (787)
                                         .++|++|+..- +.|+.++ .+ ..|++++|++   +++.++.++.|+|||....+....|
T Consensus       159 -------------------gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL  218 (464)
T KOG0284|consen  159 -------------------GGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL  218 (464)
T ss_pred             -------------------CceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence                               26899999854 3445454 34 5899999998   4555666778999998877766666


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      .+|--             ....+++.|  ..||.++.+-++     ..|+..++.++.+.-...+.++            
T Consensus       219 ~GHgw-------------dVksvdWHP~kgLiasgskDnlV-----KlWDprSg~cl~tlh~HKntVl------------  268 (464)
T KOG0284|consen  219 RGHGW-------------DVKSVDWHPTKGLIASGSKDNLV-----KLWDPRSGSCLATLHGHKNTVL------------  268 (464)
T ss_pred             ccCCC-------------CcceeccCCccceeEEccCCcee-----EeecCCCcchhhhhhhccceEE------------
Confidence            55421             134677888  678888766321     2356554433211000000111            


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLL  384 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lL  384 (787)
                                            .+.+++.+    .-+++++.|..++++|+++.+.+..+++|+..|.+++|+| .-.+|
T Consensus       269 ----------------------~~~f~~n~----N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf  322 (464)
T KOG0284|consen  269 ----------------------AVKFNPNG----NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF  322 (464)
T ss_pred             ----------------------EEEEcCCC----CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence                                  11122222    2345788999999999999999999999999999999999 56788


Q ss_pred             EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       385 ATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +|++.||. |..|.+-..                 .++-.+.-+ +...|++++|.|=|..||+|+.|.|+++|.-...+
T Consensus       323 tsgg~Dgs-vvh~~v~~~-----------------~p~~~i~~A-Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  323 TSGGSDGS-VVHWVVGLE-----------------EPLGEIPPA-HDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             eeccCCCc-eEEEecccc-----------------ccccCCCcc-cccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence            99999776 888987311                 233333222 22469999999999999999999999999876554


Q ss_pred             Cc
Q 003907          465 GD  466 (787)
Q Consensus       465 g~  466 (787)
                      ..
T Consensus       384 d~  385 (464)
T KOG0284|consen  384 DK  385 (464)
T ss_pred             Cc
Confidence            43

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=3.6e-16  Score=174.70  Aligned_cols=220  Identities=15%  Similarity=0.147  Sum_probs=163.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.|.|||..++.++++++-.. +|++.+|=.  +.+++|.|+ +|++|+..|++..+++..|+.=             ..
T Consensus        35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR  101 (794)
T KOG0276|consen   35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR  101 (794)
T ss_pred             CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence            589999999999999998654 888877744  788888765 7999999999999999988762             35


Q ss_pred             eeEEcc--ceEEEecCCce--ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          249 PMAVGP--RWLAYASNTLL--LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~~~--l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      .+++.|  -++-+++++..  +|+     |+.  ..             +              +.++|.++.+-+.   
T Consensus       102 ~iavHPt~P~vLtsSDDm~iKlW~-----we~--~w-------------a--------------~~qtfeGH~HyVM---  144 (794)
T KOG0276|consen  102 SIAVHPTLPYVLTSSDDMTIKLWD-----WEN--EW-------------A--------------CEQTFEGHEHYVM---  144 (794)
T ss_pred             eeeecCCCCeEEecCCccEEEEee-----ccC--ce-------------e--------------eeeEEcCcceEEE---
Confidence            678888  46666666542  222     111  00             0              0023333332211   


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCC
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG--~lLATaS~dG~~IrVWdi~~~  402 (787)
                         .+.++|   ....++++++-|++|+||.+.+..+..+|++|+..|+|++|=+-|  -+|+||++ +.+|+|||.++-
T Consensus       145 ---qv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQtk  217 (794)
T KOG0276|consen  145 ---QVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQTK  217 (794)
T ss_pred             ---EEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeecchH
Confidence               122222   122356788899999999999999999999999999999998755  58999988 777999998641


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~  468 (787)
                                       .++.+|. |++ ..|..++|.|.=-+|++||.|||++||.-.+|..+..
T Consensus       218 -----------------~CV~TLe-GHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  218 -----------------SCVQTLE-GHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             -----------------HHHHHhh-ccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence                             4666665 544 4599999999999999999999999999988877654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=164.69  Aligned_cols=235  Identities=16%  Similarity=0.227  Sum_probs=169.9

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 003907           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV  136 (787)
Q Consensus        57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV  136 (787)
                      ..|+-..||-      ..+.+|+.++++..++|+++. ..++.+|++|.+.|.++.+.-.           .+    .+|
T Consensus       220 g~it~~d~d~------~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~-----------~~----~vV  277 (459)
T KOG0288|consen  220 GNITSIDFDS------DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS-----------HS----RVV  277 (459)
T ss_pred             CCcceeeecC------CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc-----------cc----cee
Confidence            3366666653      246788888888899999964 6788999999999999987621           12    234


Q ss_pred             EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEE
Q 003907          137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYC  215 (787)
Q Consensus       137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i  215 (787)
                      ++.                               .+++|++||+.++.+.+++-+-+.+.+|.++...++.+- +++|++
T Consensus       278 sgs-------------------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  278 SGS-------------------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRF  326 (459)
T ss_pred             ecc-------------------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEE
Confidence            431                               258999999999999999999999999999976666664 678999


Q ss_pred             EECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeE
Q 003907          216 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA  295 (787)
Q Consensus       216 wD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva  295 (787)
                      ||+++..+..++..+..              +.++.+++                                  ++-.   
T Consensus       327 wD~Rs~~~~~sv~~gg~--------------vtSl~ls~----------------------------------~g~~---  355 (459)
T KOG0288|consen  327 WDIRSADKTRSVPLGGR--------------VTSLDLSM----------------------------------DGLE---  355 (459)
T ss_pred             EeccCCceeeEeecCcc--------------eeeEeecc----------------------------------CCeE---
Confidence            99998876665542111              11222211                                  0000   


Q ss_pred             eeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC----CCC
Q 003907          296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSP  371 (787)
Q Consensus       296 ~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH----~~p  371 (787)
                                                                    +.+...|-++.+.|+.+.+....+.+-    .+.
T Consensus       356 ----------------------------------------------lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD  389 (459)
T KOG0288|consen  356 ----------------------------------------------LLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD  389 (459)
T ss_pred             ----------------------------------------------EeeecCCCceeeeecccccEEEEeeccccccccc
Confidence                                                          001134567778888888777777642    234


Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      .+.+.|||+|.|+|+||.||. |.||++..       |          .....+..-..++.|.+++|+|-|..|++++.
T Consensus       390 wtrvvfSpd~~YvaAGS~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             cceeEECCCCceeeeccCCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            889999999999999999886 99999854       2          23444443333336999999999999999999


Q ss_pred             CCeEEEEe
Q 003907          452 KGTCHVFV  459 (787)
Q Consensus       452 dgTVhIwd  459 (787)
                      ++.+.+|.
T Consensus       452 ~~~v~lW~  459 (459)
T KOG0288|consen  452 QKAVTLWT  459 (459)
T ss_pred             CcceEecC
Confidence            99999993

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.68  E-value=2.5e-14  Score=145.31  Aligned_cols=175  Identities=20%  Similarity=0.274  Sum_probs=129.5

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.|++||+.+++....+..+ ..+..+.+++  +.|+++. ++.|++||+.+++.+..+..+..+             ..
T Consensus        31 g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i~   97 (289)
T cd00200          31 GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VS   97 (289)
T ss_pred             cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------EE
Confidence            58999999999888877755 5777899887  3666655 678999999987766665543321             11


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .+++.+       +.                            .+                                   
T Consensus        98 ~~~~~~-------~~----------------------------~~-----------------------------------  107 (289)
T cd00200          98 SVAFSP-------DG----------------------------RI-----------------------------------  107 (289)
T ss_pred             EEEEcC-------CC----------------------------CE-----------------------------------
Confidence            122211       00                            00                                   


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                   ++.+..+|.|.+||+.+++.+..+..|..+|.+++|+|++.+|++++.+|. |++||+..       
T Consensus       108 -------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~-------  166 (289)
T cd00200         108 -------------LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRT-------  166 (289)
T ss_pred             -------------EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc-EEEEEccc-------
Confidence                         011234789999999999999999999999999999999999999986565 99999853       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      +          ..+..+. + +...|.+++|+|+++.|++++.|+.+++||+...
T Consensus       167 ~----------~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         167 G----------KCVATLT-G-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             c----------ccceeEe-c-CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            1          2333343 2 3346999999999999999999999999999764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.67  E-value=4.3e-15  Score=172.02  Aligned_cols=228  Identities=14%  Similarity=0.136  Sum_probs=168.5

Q ss_pred             EEEEEecC-cEEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           77 VLLLGYQN-GFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        77 vL~lG~~~-G~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      .+..|..+ .+++||+.. +.+... +.+|.|.|..++|.           . . .++|..  |.               
T Consensus       220 ~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~-----------~-~-~~~lvs--gS---------------  268 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFP-----------S-G-GDKLVS--GS---------------  268 (537)
T ss_pred             eEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEe-----------c-C-CCEEEE--Ee---------------
Confidence            45556555 478999965 555555 88999999999986           1 1 125533  31               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV  232 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~  232 (787)
                                      .+.++++||..+|++++++..+ +.|+.+...+..++. +.|++|++||+.++.+++++.+|..
T Consensus       269 ----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  269 ----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             ----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence                            2479999999999999999965 578888887766666 4678999999999999998887554


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (787)
Q Consensus       233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt  312 (787)
                      +             +..+.+       .. +                                                 
T Consensus       333 ~-------------V~~v~~-------~~-~-------------------------------------------------  342 (537)
T KOG0274|consen  333 P-------------VNCVQL-------DE-P-------------------------------------------------  342 (537)
T ss_pred             c-------------EEEEEe-------cC-C-------------------------------------------------
Confidence            3             111221       11 0                                                 


Q ss_pred             ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (787)
Q Consensus       313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~  392 (787)
                                                  .+.++..||+|+|||+.++++++.+.+|+..|.++.|+.. ..+.+||.|+ 
T Consensus       343 ----------------------------~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~-  392 (537)
T KOG0274|consen  343 ----------------------------LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT-  392 (537)
T ss_pred             ----------------------------EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc-
Confidence                                        0113467899999999999999999999999999999876 8999999965 


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (787)
Q Consensus       393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~  471 (787)
                      .|++||+....                .+++.|. | +.+.+.++.  ..+++|.+++.|++|++||++..+....+.+
T Consensus       393 ~IkvWdl~~~~----------------~c~~tl~-~-h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  393 TIKVWDLRTKR----------------KCIHTLQ-G-HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             ceEeecCCchh----------------hhhhhhc-C-Ccccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence            59999995410                2455553 2 334454444  4578999999999999999998877665554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.67  E-value=4.3e-14  Score=150.66  Aligned_cols=286  Identities=17%  Similarity=0.189  Sum_probs=180.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|||.|+.+.|.-       ++.+|++|.-+| ++||.+.......++.    +++.-|+++-+-          ..-
T Consensus       102 ltgHKDSVt~~~Fsh-------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a  160 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSH-------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRA  160 (399)
T ss_pred             ecCCCCceEEEEEcc-------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------ccc
Confidence            456999999999964       588999999888 8999997655444444    566666766441          111


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV  207 (787)
                      ++|+.  |.                               .++.|-.|.+-++.+.+.+..++ ++.+=.|.|  +++++
T Consensus       161 ~illA--G~-------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  161 HILLA--GS-------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cEEEe--ec-------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            23332  21                               13579999999988888887664 776666766  77887


Q ss_pred             EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCC---ceecC--cceeccccCCCC
Q 003907          208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNT---LLLSN--SGRLSPQNLTPS  280 (787)
Q Consensus       208 ~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~---~~l~~--~g~~s~q~lt~~  280 (787)
                      +.+ +.|.+||..|++.++.+.....-+            ...++++- -++++.++.   ..+.+  +|.+. -...+ 
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv-~~~n~-  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV-NCNNG-  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceEE-EecCC-
Confidence            765 579999999999999887321100            01223322 233333321   01111  11110 00000 


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                           +.|..+  ..+..      .                 ..+...+.++....    -.+.+.-||+|.|||+...+
T Consensus       274 -----~~~~l~--~~~e~------~-----------------~esve~~~~ss~lp----L~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  274 -----TVPELK--PSQEE------L-----------------DESVESIPSSSKLP----LAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             -----CCcccc--ccchh------h-----------------hhhhhhcccccccc----hhhcccccceEEEEecccch
Confidence                 000000  00000      0                 00001111111111    12356789999999998876


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      + +++-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.++       |          +.+++++ | |+..|++++.+
T Consensus       320 ~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y~-G-H~~~Il~f~ls  377 (399)
T KOG0296|consen  320 L-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTYT-G-HQMGILDFALS  377 (399)
T ss_pred             h-heeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEEe-c-CchheeEEEEc
Confidence            4 45567999999999998 567888888786 99999875       5          4666664 5 45679999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCC
Q 003907          441 HYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ||.++++++|.|+|.+||++.
T Consensus       378 ~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=5e-15  Score=165.71  Aligned_cols=221  Identities=15%  Similarity=0.240  Sum_probs=169.0

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      .+-+++|.+++ ++||+.+. .+....+..|..-++++++-|.             .|+++. +.|              
T Consensus        67 knWiv~GsDD~~IrVfnynt-~ekV~~FeAH~DyIR~iavHPt-------------~P~vLt-sSD--------------  117 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNT-GEKVKTFEAHSDYIRSIAVHPT-------------LPYVLT-SSD--------------  117 (794)
T ss_pred             cceEEEecCCceEEEEeccc-ceeeEEeeccccceeeeeecCC-------------CCeEEe-cCC--------------
Confidence            56899999987 99999965 4455678899999999999974             467654 211              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCCC-cEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFRS-SVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSV  227 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-~~v~tL~f~s-~V~sV~~s~---~~La-V~~~~~I~iwD~~T~e~l~tl  227 (787)
                                        +-+|++||...+ .+..+++.|+ -|..|+|||   +.+| .++|.+|++|.+......+|+
T Consensus       118 ------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl  179 (794)
T KOG0276|consen  118 ------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL  179 (794)
T ss_pred             ------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence                              369999999765 5677777765 799999999   3555 477889999999999899999


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      .+|..             |.+.+.+      |++.+ |                                          
T Consensus       180 ~gHek-------------GVN~Vdy------y~~gdkp------------------------------------------  198 (794)
T KOG0276|consen  180 EGHEK-------------GVNCVDY------YTGGDKP------------------------------------------  198 (794)
T ss_pred             ecccc-------------CcceEEe------ccCCCcc------------------------------------------
Confidence            98765             1233332      22211 1                                          


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT  386 (787)
                                                        .+.+++.|.+|+|||.++++++.++.+|+..|++++|+|.=.+++|
T Consensus       199 ----------------------------------ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  199 ----------------------------------YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             ----------------------------------eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence                                              0124567899999999999999999999999999999999999999


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (787)
Q Consensus       387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI  457 (787)
                      ||+||+ +|||...+.                 +....|.-|.  .+|+||+-.++++.+++|.+.|.|.|
T Consensus       245 gsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  245 GSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999887 999986432                 1111222222  35999999999999999999887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.67  E-value=6e-16  Score=169.38  Aligned_cols=264  Identities=14%  Similarity=0.106  Sum_probs=186.8

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ...+|++.|..+.|=.      ..+.+|+.|..++ +.||++-..+.+..++.+|..+|+.+.+.+.+           .
T Consensus       209 ~~~gH~kgvsai~~fp------~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-----------~  271 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFP------KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-----------T  271 (503)
T ss_pred             eccCCccccchhhhcc------ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-----------C
Confidence            3678888888888742      1356777777776 99999988889999999999999999988543           1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVA  206 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~La  206 (787)
                       -+| .++                                 .++.|++||+.||+++..+.....++.|.+.+   ++++
T Consensus       272 -~fL-S~s---------------------------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl  316 (503)
T KOG0282|consen  272 -SFL-SAS---------------------------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL  316 (503)
T ss_pred             -eee-eee---------------------------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence             133 211                                 24799999999999999999989999999987   4555


Q ss_pred             EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          207 VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       207 V~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      +| .+.+|..||+++++.++.+..|-.+             ...+.|       -.                        
T Consensus       317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~------------------------  352 (503)
T KOG0282|consen  317 VGGSDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VD------------------------  352 (503)
T ss_pred             EecCCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------cc------------------------
Confidence            54 5678999999999865554332110             111111       00                        


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                         .|.                                                 ..++...|+.++||+....-.+..+
T Consensus       353 ---~g~-------------------------------------------------rFissSDdks~riWe~~~~v~ik~i  380 (503)
T KOG0282|consen  353 ---EGR-------------------------------------------------RFISSSDDKSVRIWENRIPVPIKNI  380 (503)
T ss_pred             ---CCc-------------------------------------------------eEeeeccCccEEEEEcCCCccchhh
Confidence               000                                                 0123356789999999887665544


Q ss_pred             c-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCC
Q 003907          366 K-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYS  443 (787)
Q Consensus       366 ~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg  443 (787)
                      . .+.....+|+.+|+|.+++.=|. |+.|-||.+.+-..               ...++...|+..+ --..+.|||||
T Consensus       381 ~~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r---------------~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFR---------------LNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cchhhccCcceecCCCCCeehhhcc-CceEEEEecccccc---------------cCHhhhhcceeccCceeeEEEcCCC
Confidence            3 23345568999999999999898 66799999754210               1112222343322 24569999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      ++|++|+.||.+.+||.++......+.+|+....+
T Consensus       445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~  479 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG  479 (503)
T ss_pred             CeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence            99999999999999999998877788888654333

>PTZ00420 coronin; Provisional

Probab=99.66  E-value=5.2e-14  Score=163.83  Aligned_cols=218  Identities=11%  Similarity=0.134  Sum_probs=146.0

Q ss_pred             EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (787)
Q Consensus        86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (787)
                      +++|+... ......+..|.++|..+++.|.          ...  +||..+                            
T Consensus        56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~----------~~~--lLASgS----------------------------   94 (568)
T PTZ00420         56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPC----------FSE--ILASGS----------------------------   94 (568)
T ss_pred             EEeeecCC-CceEEEEcCCCCCEEEEEEcCC----------CCC--EEEEEe----------------------------
Confidence            78998754 3344567889999999999873          122  665422                            


Q ss_pred             CCCCCCCCEEEEEECCCCe--------EEEEEeC-CCcEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 003907          166 GNCVNSPTAVRFYSFQSHC--------YEHVLRF-RSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPV  232 (787)
Q Consensus       166 ~~~~~~p~tVrlWdlktg~--------~v~tL~f-~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~  232 (787)
                           .+++|+|||+.++.        .+..+.. ...|..|+|+|   .+|++ +.++.|+|||+.+++...++. ++.
T Consensus        95 -----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~  168 (568)
T PTZ00420         95 -----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK  168 (568)
T ss_pred             -----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence                 13689999998642        3345554 45899999998   34555 457789999999998766553 221


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (787)
Q Consensus       233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt  312 (787)
                      .             ...++++|                                  . |.+                   
T Consensus       169 ~-------------V~Slswsp----------------------------------d-G~l-------------------  181 (568)
T PTZ00420        169 K-------------LSSLKWNI----------------------------------K-GNL-------------------  181 (568)
T ss_pred             c-------------EEEEEECC----------------------------------C-CCE-------------------
Confidence            1             12233321                                  1 000                   


Q ss_pred             ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 003907          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA  387 (787)
Q Consensus       313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsa-----LaFSpdG~lLATa  387 (787)
                                                   ++.+..|+.|+|||+++++.+.++.+|.+.+.+     ..|++++.+|+|+
T Consensus       182 -----------------------------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt  232 (568)
T PTZ00420        182 -----------------------------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST  232 (568)
T ss_pred             -----------------------------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence                                         112345889999999999999999999886543     3467899999998


Q ss_pred             EcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       388 S~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +.++   +.|+|||++..      +          ..+..+.-......+...-+.++|.++++|+.|++|++|++..
T Consensus       233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            8765   36999998631      1          2333322111223344445567799999999999999999965

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.1e-15  Score=165.44  Aligned_cols=237  Identities=19%  Similarity=0.200  Sum_probs=178.6

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa  134 (787)
                      .+.|+-+.+..       .++.|++|+.+| ++|||++.....+.+...|.+-|.++++..                .++
T Consensus       217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l  273 (484)
T KOG0305|consen  217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL  273 (484)
T ss_pred             CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence            67788888764       488999999998 899999887666666555889999999872                222


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE-EeC-CCcEEEEEecC--CeEEEE-e
Q 003907          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LRF-RSSVCMVRCSP--RIVAVG-L  209 (787)
Q Consensus       135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~t-L~f-~s~V~sV~~s~--~~LaV~-~  209 (787)
                      . +|.                               ..+.|.++|++..+.+.. +.. ...|+.+++++  +.||.+ .
T Consensus       274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn  321 (484)
T KOG0305|consen  274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN  321 (484)
T ss_pred             E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence            2 221                               125799999998876555 664 46999999988  788885 4


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      |+.++|||..+.+.++++..|...             +-.+|++|   ..||.++                         
T Consensus       322 DN~~~Iwd~~~~~p~~~~~~H~aA-------------VKA~awcP~q~~lLAsGG-------------------------  363 (484)
T KOG0305|consen  322 DNVVFIWDGLSPEPKFTFTEHTAA-------------VKALAWCPWQSGLLATGG-------------------------  363 (484)
T ss_pred             ccceEeccCCCccccEEEecccee-------------eeEeeeCCCccCceEEcC-------------------------
Confidence            778999999888888888887652             34566655   3444433                         


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                                                                +..|+.|++||..+++.+..+.
T Consensus       364 ----------------------------------------------------------Gs~D~~i~fwn~~~g~~i~~vd  385 (484)
T KOG0305|consen  364 ----------------------------------------------------------GSADRCIKFWNTNTGARIDSVD  385 (484)
T ss_pred             ----------------------------------------------------------CCcccEEEEEEcCCCcEecccc
Confidence                                                                      2458999999999999888776


Q ss_pred             cCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          367 AHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATa-S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      .. +-|..|.|++..+-|+++ +.-...|.||+...                 ..++..+. | |...|..+++||||..
T Consensus       386 tg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----------------~~~~~~l~-g-H~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  386 TG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----------------MKLVAELL-G-HTSRVLYLALSPDGET  445 (484)
T ss_pred             cC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----------------cceeeeec-C-CcceeEEEEECCCCCE
Confidence            54 679999999998666654 33234699999832                 13444443 4 4457999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 003907          446 IAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~~  463 (787)
                      |++++.|.|+++|++-+.
T Consensus       446 i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEecccCcEEeccccCC
Confidence            999999999999999765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.66  E-value=4e-14  Score=145.82  Aligned_cols=263  Identities=13%  Similarity=0.155  Sum_probs=171.6

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+|--.++-+.||+       .+-+|..+..+ ..-||-.. +|+..-.+.+|.|.|.++.+.-+           ++  
T Consensus         7 ~GHERplTqiKyN~-------eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~-----------s~--   65 (327)
T KOG0643|consen    7 QGHERPLTQIKYNR-------EGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWD-----------SK--   65 (327)
T ss_pred             ccCccccceEEecC-------CCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCC-----------cc--
Confidence            45556688888986       24577777665 58999874 57777889999999999988731           22  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL  209 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~  209 (787)
                      .|  ++|     +                          .+.+++|||.++|+++.+++++++|..+.|+.  ++++++.
T Consensus        66 ~l--iTG-----S--------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t  112 (327)
T KOG0643|consen   66 HL--ITG-----S--------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST  112 (327)
T ss_pred             ee--eec-----c--------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence            33  232     1                          23689999999999999999999999999987  5666666


Q ss_pred             CC------eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          210 AT------QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       210 ~~------~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      ++      .|.+||++....  .+.. ..                |+-.    |-...+.+                   
T Consensus       113 D~~mg~~~~v~~fdi~~~~~--~~~s-~e----------------p~~k----I~t~~ski-------------------  150 (327)
T KOG0643|consen  113 DKQMGYTCFVSVFDIRDDSS--DIDS-EE----------------PYLK----IPTPDSKI-------------------  150 (327)
T ss_pred             hhhcCcceEEEEEEccCChh--hhcc-cC----------------ceEE----ecCCccce-------------------
Confidence            54      288888764321  0000 00                0000    00000000                   


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII  362 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v  362 (787)
                                                                     ....|.+.+..+..+..+|.|.+||+.++ +.+
T Consensus       151 -----------------------------------------------t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  151 -----------------------------------------------TSALWGPLGETIIAGHEDGSISIYDARTGKELV  183 (327)
T ss_pred             -----------------------------------------------eeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence                                                           00112222334456788999999999997 566


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc---------cC-------------CCCCCccccCCcc-
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM---------RS-------------GSGNHKYDWNSSH-  419 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~---------~~-------------~~g~~~~~~~~s~-  419 (787)
                      ...+.|...|+.|.|+||.++++|+|. +++-++||..+...         .|             +-|....|-.... 
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~  262 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTST  262 (327)
T ss_pred             echhhhccccccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecc
Confidence            667889999999999999999999999 56689999764210         00             0010000000000 


Q ss_pred             ---------------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          420 ---------------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       420 ---------------~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                                     +.+-.+ .| |-++|.+++|+|||+-.++|+.||.|+|...+
T Consensus       263 r~GKFEArFyh~i~eEEigrv-kG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  263 RAGKFEARFYHLIFEEEIGRV-KG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccchhhhHHHHHHHHHhccc-cc-cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                           001111 12 23579999999999999999999999886554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.65  E-value=3.3e-14  Score=156.96  Aligned_cols=275  Identities=20%  Similarity=0.209  Sum_probs=177.0

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      +|.-+++=|+|-     |  .+-.++.|...| +||||....+.+ ...+.--.|||..+++.+           .++| 
T Consensus        57 EH~~~vtVAkyS-----P--sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~-----------ds~R-  117 (603)
T KOG0318|consen   57 EHAHQVTVAKYS-----P--SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF-----------DSKR-  117 (603)
T ss_pred             cccceeEEEEeC-----C--CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC-----------CCcE-
Confidence            466678878874     3  367999999888 999999542211 111222348999999984           3443 


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAV  207 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV  207 (787)
                      +.|+  |++-                +            .-+.+.+||  +|.-+.++..++ .|.+++|.|   -++++
T Consensus       118 I~av--GEGr----------------e------------rfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T  165 (603)
T KOG0318|consen  118 IAAV--GEGR----------------E------------RFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIAT  165 (603)
T ss_pred             EEEE--ecCc----------------c------------ceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEe
Confidence            4433  4431                0            014566666  788888998876 678898876   35666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. |+.|.+|+=.-++-..++..|..-             ++.+-       |+                          
T Consensus       166 ~sdDn~v~ffeGPPFKFk~s~r~HskF-------------V~~VR-------ys--------------------------  199 (603)
T KOG0318|consen  166 GSDDNTVAFFEGPPFKFKSSFREHSKF-------------VNCVR-------YS--------------------------  199 (603)
T ss_pred             ccCCCeEEEeeCCCeeeeecccccccc-------------eeeEE-------EC--------------------------
Confidence            55 557888875545444444444331             00111       11                          


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                                         |++               .-++++..||.|.|||=.+++.+..|.
T Consensus       200 -----------------------------------PDG---------------~~Fat~gsDgki~iyDGktge~vg~l~  229 (603)
T KOG0318|consen  200 -----------------------------------PDG---------------SRFATAGSDGKIYIYDGKTGEKVGELE  229 (603)
T ss_pred             -----------------------------------CCC---------------CeEEEecCCccEEEEcCCCccEEEEec
Confidence                                               111               112355679999999999999999998


Q ss_pred             ---cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--CCCC------CccccCC------------------
Q 003907          367 ---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--GSGN------HKYDWNS------------------  417 (787)
Q Consensus       367 ---aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~--~~g~------~~~~~~~------------------  417 (787)
                         +|++.|.+|+|+||++.++|+|. |+++||||+.......  ..+.      .+..|..                  
T Consensus       230 ~~~aHkGsIfalsWsPDs~~~~T~Sa-Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~  308 (603)
T KOG0318|consen  230 DSDAHKGSIFALSWSPDSTQFLTVSA-DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS  308 (603)
T ss_pred             CCCCccccEEEEEECCCCceEEEecC-CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence               99999999999999999999999 6679999986532000  0000      0001110                  


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCCCC
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGD  478 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~~~  478 (787)
                      ....+. ...| |+..|++++.+||+++|.++|.||.|.=|++....... .-+.|+.++.+
T Consensus       309 d~~~~~-~i~G-HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~  368 (603)
T KOG0318|consen  309 DPSVLK-VISG-HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG  368 (603)
T ss_pred             CCChhh-eecc-cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence            011111 2235 34569999999999999999999999999997643322 22667665443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.65  E-value=1.5e-15  Score=161.34  Aligned_cols=278  Identities=15%  Similarity=0.157  Sum_probs=187.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .++|+|.|....-+.     + .-..++.|.-+| ++|||++ .-++..++..|+|.|+.|.+.           + .. 
T Consensus        62 L~gHrdGV~~lakhp-----~-~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~-----------~-~~-  121 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHP-----N-KLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVT-----------Q-TS-  121 (433)
T ss_pred             ccccccccchhhcCc-----c-hhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEec-----------c-cc-
Confidence            578999998766542     1 113567777766 9999995 467888999999999999876           2 11 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~  208 (787)
                       ++ . +|+                                +++|+.|-+.- ..++++-..+.++.|+...  ..+|++
T Consensus       122 -~~-t-vgd--------------------------------DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc  165 (433)
T KOG0268|consen  122 -FF-T-VGD--------------------------------DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC  165 (433)
T ss_pred             -eE-E-ecC--------------------------------CcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence             32 2 232                                36899999754 6899999999999999877  344444


Q ss_pred             eCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          209 LATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                       .++|.|||..-...+.++.. .+.              ...+.++|   ..||.++++-     +.+..|..+...   
T Consensus       166 -Ge~i~IWD~~R~~Pv~smswG~Dt--------------i~svkfNpvETsILas~~sDr-----sIvLyD~R~~~P---  222 (433)
T KOG0268|consen  166 -GEQIDIWDEQRDNPVSSMSWGADS--------------ISSVKFNPVETSILASCASDR-----SIVLYDLRQASP---  222 (433)
T ss_pred             -CceeeecccccCCccceeecCCCc--------------eeEEecCCCcchheeeeccCC-----ceEEEecccCCc---
Confidence             46899999876555555543 211              12345555   6677775541     111122111100   


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS  363 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~  363 (787)
                                                  +.+....+    -.+.+++|    +.+..+..+..|..+..||++.. +++.
T Consensus       223 ----------------------------l~KVi~~m----RTN~Iswn----PeafnF~~a~ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  223 ----------------------------LKKVILTM----RTNTICWN----PEAFNFVAANEDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             ----------------------------cceeeeec----cccceecC----ccccceeeccccccceehhhhhhcccch
Confidence                                        00000001    12233333    34444567889999999999875 4677


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      ..++|.+.|..+.|||.|+-++|||- |++||||.+..       +.        .+.+|--+|=   ..|.++.||.|+
T Consensus       267 v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~-------~~--------SRdiYhtkRM---q~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNH-------GH--------SRDIYHTKRM---QHVFCVKYSMDS  327 (433)
T ss_pred             hhcccceeEEEeccCCCcchhccccc-cceEEEeecCC-------Cc--------chhhhhHhhh---heeeEEEEeccc
Confidence            78899999999999999999999999 56699999853       10        1234433331   259999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~  463 (787)
                      +|+.+||+|+.|++|.-+..
T Consensus       328 kyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cEEEecCCCcceeeeecchh
Confidence            99999999999999987643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.65  E-value=3.1e-13  Score=142.17  Aligned_cols=267  Identities=13%  Similarity=0.090  Sum_probs=159.7

Q ss_pred             eEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        76 ~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      .+++++..+| +.+||++. +++...+..+.+ +..+.+.|+.             ..|+++..+               
T Consensus         2 ~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg-------------~~l~~~~~~---------------   51 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDG-------------KLLYVCASD---------------   51 (300)
T ss_pred             cEEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCC-------------CEEEEEECC---------------
Confidence            3566666655 99999954 556666665444 5667777531             244333221               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE--eCCeEEEEECCCCceeEEEEec
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG--LATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~--~~~~I~iwD~~T~e~l~tl~t~  230 (787)
                                       .++|++||+++++.+.++.....+..+.+++  +.|+++  .++.|++||+.+.+.+..+...
T Consensus        52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~  114 (300)
T TIGR03866        52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG  114 (300)
T ss_pred             -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence                             2589999999999988887665566777876  556554  3568999999988776666432


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      ..              ...++++|  ++|+++......    ...++.-+            +.+....           
T Consensus       115 ~~--------------~~~~~~~~dg~~l~~~~~~~~~----~~~~d~~~------------~~~~~~~-----------  153 (300)
T TIGR03866       115 VE--------------PEGMAVSPDGKIVVNTSETTNM----AHFIDTKT------------YEIVDNV-----------  153 (300)
T ss_pred             CC--------------cceEEECCCCCEEEEEecCCCe----EEEEeCCC------------CeEEEEE-----------
Confidence            11              12467776  666665432100    00011000            0000000           


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCC
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSG  381 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~-----~--pIsaLaFSpdG  381 (787)
                                  ..........++++.+...   ..+..+|.|.+||+.+++.+..+..+.     .  ....++|+|+|
T Consensus       154 ------------~~~~~~~~~~~s~dg~~l~---~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       154 ------------LVDQRPRFAEFTADGKELW---VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             ------------EcCCCccEEEECCCCCEEE---EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence                        0000011122333333211   234568999999999998877765332     1  12468899999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeC
Q 003907          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVL  460 (787)
Q Consensus       382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl  460 (787)
                      ++++.+..++..|.+||+..       +          ..+..+..+   ..+.+++|+|||++|+++ ..+++|+|||+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            98665543344599999853       2          233333222   248899999999999887 46899999999


Q ss_pred             CCCCC
Q 003907          461 SPFGG  465 (787)
Q Consensus       461 ~~~gg  465 (787)
                      .....
T Consensus       279 ~~~~~  283 (300)
T TIGR03866       279 AALKV  283 (300)
T ss_pred             CCCcE
Confidence            87543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00421 coronin; Provisional

Probab=99.65  E-value=1.4e-13  Score=158.77  Aligned_cols=249  Identities=12%  Similarity=0.107  Sum_probs=161.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~ells~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      ..+|++.|..+.|+..      ++++|++|..+| ++|||+...+      +....+..|...|.+|++.|..       
T Consensus        71 l~GH~~~V~~v~fsP~------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-------  137 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPF------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-------  137 (493)
T ss_pred             EeCCCCCEEEEEEcCC------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-------
Confidence            3568889999999731      245788887776 9999996532      2344577888999999998741       


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-  202 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-  202 (787)
                           ..+|+..+.                                 +++|+|||+++++.+.++..+ ..|.+|+|++ 
T Consensus       138 -----~~iLaSgs~---------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        138 -----MNVLASAGA---------------------------------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             -----CCEEEEEeC---------------------------------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence                 125654221                                 368999999999999998754 6899999987 


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       ++|+++. ++.|+|||+.+++.+.++..|....            ...+.+.       ...                 
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~-------~~~-----------------  223 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWA-------KRK-----------------  223 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEEEc-------CCC-----------------
Confidence             5777655 5689999999998887776654310            0011111       100                 


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                                +.+++                                             .+.+...|+.|+|||+.+..
T Consensus       224 ----------~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        224 ----------DLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             ----------CeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCC
Confidence                      00000                                             00012458999999998754


Q ss_pred             -EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          361 -IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       361 -~v~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                       .+..+..|. ..+....|++++++|++++..+..|++||+..       +          ..++.+. ......+..++
T Consensus       249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~  310 (493)
T PTZ00421        249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLC  310 (493)
T ss_pred             CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceE
Confidence             444444443 45667789999999999986344699999954       2          1222222 11233577888


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCC
Q 003907          439 FSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       439 FSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      |.|.  +-+-...-...++|.+..
T Consensus       311 ~~pk--~~~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        311 MMPK--WSLDTRKCEIARFYALTY  332 (493)
T ss_pred             eccc--ccccccceeeeEEEEecC
Confidence            8884  333333334457777754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.1e-13  Score=143.44  Aligned_cols=242  Identities=14%  Similarity=0.183  Sum_probs=157.1

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      +....|.-..|+.       ++.+|+++..+ .+||||+.....++.+-+++- .|..+.+.           ....  .
T Consensus        12 ~~~~~i~sl~fs~-------~G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Ft-----------h~~~--~   70 (311)
T KOG1446|consen   12 ETNGKINSLDFSD-------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFT-----------HHSN--T   70 (311)
T ss_pred             cCCCceeEEEecC-------CCCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEe-----------cCCc--e
Confidence            3677888888874       46677776665 899999976444444444433 35555544           1111  2


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEE
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVG  208 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~  208 (787)
                       ++.+  .+                            ..+.+||.-++.++++++.+..|. .|.+|+.+|   .+|.++
T Consensus        71 -~i~s--St----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S  119 (311)
T KOG1446|consen   71 -VIHS--ST----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS  119 (311)
T ss_pred             -EEEc--cC----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc
Confidence             2211  10                            013689999999999999998775 899999999   466678


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp  288 (787)
                      +|++|++||+++-++...+.-...               ...|+.|.=|-++                            
T Consensus       120 ~D~tvrLWDlR~~~cqg~l~~~~~---------------pi~AfDp~GLifA----------------------------  156 (311)
T KOG1446|consen  120 LDKTVRLWDLRVKKCQGLLNLSGR---------------PIAAFDPEGLIFA----------------------------  156 (311)
T ss_pred             cCCeEEeeEecCCCCceEEecCCC---------------cceeECCCCcEEE----------------------------
Confidence            889999999987766554432221               1233333111111                            


Q ss_pred             CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC--cEEEEec
Q 003907          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK  366 (787)
Q Consensus       289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~  366 (787)
                                                                             .+.....|++||++.-  .+-.+|.
T Consensus       157 -------------------------------------------------------~~~~~~~IkLyD~Rs~dkgPF~tf~  181 (311)
T KOG1446|consen  157 -------------------------------------------------------LANGSELIKLYDLRSFDKGPFTTFS  181 (311)
T ss_pred             -------------------------------------------------------EecCCCeEEEEEecccCCCCceeEc
Confidence                                                                   1112237888888753  3344443


Q ss_pred             ---cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEcc
Q 003907          367 ---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSH  441 (787)
Q Consensus       367 ---aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSp  441 (787)
                         +-....+.|.|||||++|+-+...+ .+.|.|.-.       |          ..+..+  ...... .-.+.+|+|
T Consensus       182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~-------G----------~~~~tfs~~~~~~~-~~~~a~ftP  242 (311)
T KOG1446|consen  182 ITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFD-------G----------TVKSTFSGYPNAGN-LPLSATFTP  242 (311)
T ss_pred             cCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccC-------C----------cEeeeEeeccCCCC-cceeEEECC
Confidence               3367889999999999998887744 588988632       3          233333  222111 125789999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ||+++.++++||+||+|+++...
T Consensus       243 ds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCc
Confidence            99999999999999999996543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=9.8e-15  Score=160.16  Aligned_cols=245  Identities=16%  Similarity=0.187  Sum_probs=175.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ..++.+.|...+|..     . .+.=+++...-++|+|+... -.+.+++++=+..|..+.             |+...-
T Consensus        22 ~~ke~~~vssl~fsp-----~-~P~d~aVt~S~rvqly~~~~-~~~~k~~srFk~~v~s~~-------------fR~DG~   81 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSP-----K-HPYDFAVTSSVRVQLYSSVT-RSVRKTFSRFKDVVYSVD-------------FRSDGR   81 (487)
T ss_pred             cccccCcceeEecCC-----C-CCCceEEecccEEEEEecch-hhhhhhHHhhccceeEEE-------------eecCCe
Confidence            445566788888863     1 23447777788999999853 456777777777888886             444444


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV  207 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV  207 (787)
                      |||  +||.                               .+.|+|+|+++...+..++-+ .+|..+.|++   ..|+.
T Consensus        82 Lla--aGD~-------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s  128 (487)
T KOG0310|consen   82 LLA--AGDE-------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS  128 (487)
T ss_pred             EEE--ccCC-------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence            775  3554                               158999998887777777654 5999999988   46666


Q ss_pred             EeCCe-EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~~~~-I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      |.|+. +++||+.+......+.+|..-             ....++       .                          
T Consensus       129 ~sDd~v~k~~d~s~a~v~~~l~~htDY-------------VR~g~~-------~--------------------------  162 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYVQAELSGHTDY-------------VRCGDI-------S--------------------------  162 (487)
T ss_pred             cCCCceEEEEEcCCcEEEEEecCCcce-------------eEeecc-------c--------------------------
Confidence            76664 899999988754455555430             011111       1                          


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF  365 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~  365 (787)
                       |.++.+                                                +.++++||.|++||++.. ..+.+|
T Consensus       163 -~~~~hi------------------------------------------------vvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  163 -PANDHI------------------------------------------------VVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             -cCCCeE------------------------------------------------EEecCCCceEEEEEeccCCceeEEe
Confidence             111111                                                235678999999999987 555555


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                       .|..||..+.|=|+|.++|||+  |..|+|||+..       |.         +.++.+  +.|+..|+|+++..|++.
T Consensus       194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence             5888999999999999999998  77899999954       31         333333  335567999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCC
Q 003907          446 IAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~~gg  465 (787)
                      |.+++-|+.|+|||+..++-
T Consensus       253 LlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             EeecccccceEEEEccceEE
Confidence            99999999999999887643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=3.6e-14  Score=143.94  Aligned_cols=172  Identities=15%  Similarity=0.093  Sum_probs=130.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      +++||+|+...|.+++++..++ .|++++.+.   ++-+.|.+..|++||+.|++.+..+.+|...             .
T Consensus        38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------V  104 (307)
T KOG0316|consen   38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------V  104 (307)
T ss_pred             CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------e
Confidence            4799999999999999999886 899888754   4444566778999999999999988887542             2


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                      +.+.       |-...                            ++                                  
T Consensus       105 NtV~-------fNees----------------------------SV----------------------------------  115 (307)
T KOG0316|consen  105 NTVR-------FNEES----------------------------SV----------------------------------  115 (307)
T ss_pred             eEEE-------ecCcc----------------------------eE----------------------------------
Confidence            2233       22211                            00                                  


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR  405 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~  405 (787)
                                    +++++.|..+++||.++.  +++..|..-...|.++..+  +..++++|.||+ +|.||++.    
T Consensus       116 --------------v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt-vRtydiR~----  174 (307)
T KOG0316|consen  116 --------------VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT-VRTYDIRK----  174 (307)
T ss_pred             --------------EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc-EEEEEeec----
Confidence                          123456889999999764  5788888888899988875  678999999887 89999964    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                         |          ...-..    -..+|++++||+||+.+.+++.|+|+|+.|-++.
T Consensus       175 ---G----------~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  175 ---G----------TLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ---c----------eeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence               3          111111    1246999999999999999999999999886553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.63  E-value=2.1e-15  Score=159.16  Aligned_cols=240  Identities=15%  Similarity=0.172  Sum_probs=175.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .-+|++.|+...||.         ++|+.|+.+ .++|||++ +++...++=+|-..|-.+.+..             . 
T Consensus       233 L~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~n-------------g-  288 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSN-------------G-  288 (499)
T ss_pred             hhcCCCcEEeeeccc---------eEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeC-------------C-
Confidence            456888899888873         689999876 69999996 5778888888888898888762             2 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEe-CCCcEEEEEecCCeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLR-FRSSVCMVRCSPRIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~-f~s~V~sV~~s~~~La  206 (787)
                       +++  ++.                               .++++++||+.+-..+   +.|. +...|-.|.|+.++++
T Consensus       289 -~mv--tcS-------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV  334 (499)
T KOG0281|consen  289 -YMV--TCS-------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  334 (499)
T ss_pred             -EEE--Eec-------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence             553  332                               2478999999876532   2333 4468999999999888


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      .+. +.+|++|++.|++...+|.+|...                       +|.....                      
T Consensus       335 sASgDRTikvW~~st~efvRtl~gHkRG-----------------------IAClQYr----------------------  369 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEFVRTLNGHKRG-----------------------IACLQYR----------------------  369 (499)
T ss_pred             EecCCceEEEEeccceeeehhhhccccc-----------------------ceehhcc----------------------
Confidence            765 557999999999998888776541                       2222211                      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                           |.++                                                .+++.|.+|++||+..|.++..+
T Consensus       370 -----~rlv------------------------------------------------VSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  370 -----DRLV------------------------------------------------VSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             -----CeEE------------------------------------------------EecCCCceEEEEeccccHHHHHH
Confidence                 1111                                                23567889999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      ++|+.-|.|+.|+  .+.+++|.-||+ |+|||+......   .     ..++..++..+.+  +.+.|..+.|.  ...
T Consensus       397 eGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldp---r-----a~~~~~Cl~~lv~--hsgRVFrLQFD--~fq  461 (499)
T KOG0281|consen  397 EGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDP---R-----APASTLCLRTLVE--HSGRVFRLQFD--EFQ  461 (499)
T ss_pred             hchHHhhhheeec--Cceeeeccccce-EEEEecccccCC---c-----ccccchHHHhhhh--ccceeEEEeec--ceE
Confidence            9999999999995  578999999886 999998542110   0     0011123444433  34568888885  467


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 003907          446 IAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~  462 (787)
                      |+++|.|.||-|||...
T Consensus       462 IvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  462 IISSSHDDTILIWDFLN  478 (499)
T ss_pred             EEeccCCCeEEEEEcCC
Confidence            99999999999999865

>PTZ00420 coronin; Provisional

Probab=99.63  E-value=3.1e-13  Score=157.35  Aligned_cols=130  Identities=9%  Similarity=0.135  Sum_probs=98.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------eeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC  123 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~-------~~ells~~dg~V~~v~~lP~P~~~~~~  123 (787)
                      ..+|++.|..+.|..      ..+.+|++|..+| ++|||+...+.       ....+..|.+.|.++++.|+.      
T Consensus        70 L~gH~~~V~~lafsP------~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------  137 (568)
T PTZ00420         70 LKGHTSSILDLQFNP------CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------  137 (568)
T ss_pred             EcCCCCCEEEEEEcC------CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------
Confidence            456889999999963      1246888888876 99999964332       123567788999999998741      


Q ss_pred             CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC-
Q 003907          124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-  202 (787)
Q Consensus       124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-  202 (787)
                            ..+|+. ++                                .+++|+|||+++++.+.++.++..|.++.|++ 
T Consensus       138 ------~~iLaS-gS--------------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd  178 (568)
T PTZ00420        138 ------YYIMCS-SG--------------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK  178 (568)
T ss_pred             ------CeEEEE-Ee--------------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence                  113433 22                                13689999999999998888888999999987 


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 003907          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPV  232 (787)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~  232 (787)
                       ++|+++. +++|+|||+++++.+.++..|..
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence             6777665 66899999999998888877654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.63  E-value=5e-14  Score=147.09  Aligned_cols=221  Identities=16%  Similarity=0.201  Sum_probs=160.9

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      ..+|.+|.+..+++||++. |++..-+..|.+-|..+.  |.            .|.+.+|.++.               
T Consensus       103 s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs~~--p~------------rrg~~lv~Sgs---------------  152 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNSLD--PS------------RRGPQLVCSGS---------------  152 (338)
T ss_pred             CEEEEecCCceEEEEeccc-ceeeehhccccceeeecC--cc------------ccCCeEEEecC---------------
Confidence            4566666677899999964 666665666666677665  31            12222334432               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYP  231 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p  231 (787)
                                      .+++++|||+++.+.+++++....+.+|.|+.   +.+..+-++.|++||++..+.++++.+|.
T Consensus       153 ----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~  216 (338)
T KOG0265|consen  153 ----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA  216 (338)
T ss_pred             ----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence                            24799999999999999998888999999987   56666778899999999999999999887


Q ss_pred             CcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccce
Q 003907          232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK  311 (787)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~k  311 (787)
                      .+             ...+++++    |+.                              .                   
T Consensus       217 Dt-------------It~lsls~----~gs------------------------------~-------------------  230 (338)
T KOG0265|consen  217 DT-------------ITGLSLSR----YGS------------------------------F-------------------  230 (338)
T ss_pred             Cc-------------eeeEEecc----CCC------------------------------c-------------------
Confidence            64             12334321    000                              0                   


Q ss_pred             eecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC----CcEEEEeccCCC----CeEEEEECCCCCE
Q 003907          312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT----RAIISQFKAHTS----PISALCFDPSGTL  383 (787)
Q Consensus       312 tls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s----~~~v~~~~aH~~----pIsaLaFSpdG~l  383 (787)
                                                    +.+-.-|.++++||++-    .+++..|.+|..    .....+|+|+++.
T Consensus       231 ------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  231 ------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             ------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence                                          00112367899999864    456888887643    4456789999999


Q ss_pred             EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907          384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (787)
Q Consensus       384 LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI  457 (787)
                      +..+|. ++.+.|||...                 ...+|+|- |+ ...|.+++|.|.-.+|.+++.|.||.+
T Consensus       281 i~ags~-dr~vyvwd~~~-----------------r~~lyklp-Gh-~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  281 ITAGSA-DRFVYVWDTTS-----------------RRILYKLP-GH-YGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             cccccc-cceEEEeeccc-----------------ccEEEEcC-Cc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999998 66799999743                 14788885 43 457999999999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=5.6e-14  Score=142.53  Aligned_cols=247  Identities=15%  Similarity=0.138  Sum_probs=172.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+.+++-|.-++||.    +  ..-||.+|.+..+++||.- .+.+.+.++.|.-.|..+...-           -.+  
T Consensus        13 l~~~qgaV~avryN~----d--GnY~ltcGsdrtvrLWNp~-rg~liktYsghG~EVlD~~~s~-----------Dns--   72 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNV----D--GNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHEVLDAALSS-----------DNS--   72 (307)
T ss_pred             ecccccceEEEEEcc----C--CCEEEEcCCCceEEeeccc-ccceeeeecCCCceeeeccccc-----------ccc--
Confidence            356788899999985    3  2568888888999999984 5889999999998888887662           122  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-  207 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV-  207 (787)
                      -++.  |++                               ++.|.+||..||+.++.++.+ ..|-.|+||.  .+++. 
T Consensus        73 kf~s--~Gg-------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   73 KFAS--CGG-------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             cccc--CCC-------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence            2333  321                               368999999999999999876 5899999998  45555 


Q ss_pred             EeCCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          208 GLATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       208 ~~~~~I~iwD~~T~--e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      +.+..+++||.+.-  +.++.|.+                              +.+       |..+.+          
T Consensus       120 sfD~s~r~wDCRS~s~ePiQilde------------------------------a~D-------~V~Si~----------  152 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSRSFEPIQILDE------------------------------AKD-------GVSSID----------  152 (307)
T ss_pred             cccceeEEEEcccCCCCccchhhh------------------------------hcC-------ceeEEE----------
Confidence            45778999997643  22222211                              110       000000          


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                                                 ++++                        -+..++.||+++.||++.++.....
T Consensus       153 ---------------------------v~~h------------------------eIvaGS~DGtvRtydiR~G~l~sDy  181 (307)
T KOG0316|consen  153 ---------------------------VAEH------------------------EIVAGSVDGTVRTYDIRKGTLSSDY  181 (307)
T ss_pred             ---------------------------eccc------------------------EEEeeccCCcEEEEEeecceeehhh
Confidence                                       0000                        0124567999999999999876666


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCC
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQ  444 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~  444 (787)
                      -+|  ||++++|++||+.++.++.++ ++|+-|-.+       |          ..+.. ..|+.+. -=.+++|+....
T Consensus       182 ~g~--pit~vs~s~d~nc~La~~l~s-tlrLlDk~t-------G----------klL~s-YkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  182 FGH--PITSVSFSKDGNCSLASSLDS-TLRLLDKET-------G----------KLLKS-YKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             cCC--cceeEEecCCCCEEEEeeccc-eeeecccch-------h----------HHHHH-hcccccceeeeeeeecccce
Confidence            555  999999999999999899855 599998643       3          22222 2344332 135688888889


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccc
Q 003907          445 WIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       445 ~LAs~S~dgTVhIwdl~~~gg~~~~~  470 (787)
                      .++++|.||.|.+||+........+.
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~sk~~  266 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQISKLS  266 (307)
T ss_pred             eEEeccCCceEEEEEeccceeeeeec
Confidence            99999999999999998754443333

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.8e-13  Score=138.95  Aligned_cols=261  Identities=13%  Similarity=0.149  Sum_probs=169.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC--CceeEeee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA--SNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~--~~~~ells-~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      .++|+++|-.+.|+.     . .+.+|++|..+ -++||+....  =.++.+++ .|.-.|+.+++.|-           
T Consensus        10 ~~gh~~r~W~~awhp-----~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-----------   72 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHP-----G-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-----------   72 (312)
T ss_pred             ecCCCCcEEEEEecc-----C-CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-----------
Confidence            578999998888874     2 25688888876 5999999642  23444453 46678999999974           


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--  202 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--~~v~tL~f~-s~V~sV~~s~--  202 (787)
                      ++  +||..+                                 -+.++.||.-..+  +++.+|+.+ +.|.+|++++  
T Consensus        73 g~--~La~aS---------------------------------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   73 GR--YLASAS---------------------------------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             Cc--EEEEee---------------------------------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence            22  776522                                 1358889976544  688899877 5999999987  


Q ss_pred             CeEEEEeC-CeEEEEECCCCce---eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907          203 RIVAVGLA-TQIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       203 ~~LaV~~~-~~I~iwD~~T~e~---l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                      ++||++.- ..|.||.+...+.   ...|..|..-             +--+.+.|                        
T Consensus       118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-------------VK~V~WHP------------------------  160 (312)
T KOG0645|consen  118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-------------VKHVIWHP------------------------  160 (312)
T ss_pred             CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-------------ccEEEEcC------------------------
Confidence            89999875 4699998764332   2222222210             01112211                        


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                                .                                                 .-.++++++|.+|++|+-..
T Consensus       161 ----------t-------------------------------------------------~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  161 ----------T-------------------------------------------------EDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             ----------C-------------------------------------------------cceeEEeccCCeEEEEeecC
Confidence                      0                                                 00122456788899997662


Q ss_pred             ---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc-cccC---------CcceEEEEE
Q 003907          359 ---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN---------SSHVHLYKL  425 (787)
Q Consensus       359 ---~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~-~~~~---------~s~~~l~~l  425 (787)
                         -.++++|.+|+..|.+++|++.|..|+++++|++ ++||........-.++.-. ..|.         .....+++-
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEe
Confidence               2578999999999999999999999999999775 9999843211000000000 0010         000112211


Q ss_pred             e--------------cccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCC
Q 003907          426 H--------------RGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       426 ~--------------rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~  461 (787)
                      .              .+.|...|.+++|.|. +..|+++++||+|++|.+.
T Consensus       261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            1              1223336999999995 6899999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.59  E-value=1.6e-13  Score=162.24  Aligned_cols=250  Identities=16%  Similarity=0.175  Sum_probs=173.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC------CCc-----------eeEeeeeccCcEEEEEEe
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED------ASN-----------FNELVSKRDGPVSFLQMQ  114 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~------~~~-----------~~ells~~dg~V~~v~~l  114 (787)
                      ++|...|..++|-.       ++++|+.|+++. +.||.-..      .+.           +..++..|++.|..+.+.
T Consensus        66 ~~h~~sv~CVR~S~-------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSP-------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccccCceeEEEECC-------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            34667788999864       589999999998 79999872      112           456777899999999999


Q ss_pred             cCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C
Q 003907          115 PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S  193 (787)
Q Consensus       115 P~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s  193 (787)
                      |+           ++  +||.++.                                 +++|.+||.++.+.+.+++.+ +
T Consensus       139 p~-----------~~--~lvS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen  139 PD-----------DS--LLVSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             CC-----------cc--EEEEecc---------------------------------cceEEEEccccceeeeeeecccc
Confidence            85           23  7765432                                 368999999999999999865 6


Q ss_pred             cEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC
Q 003907          194 SVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN  268 (787)
Q Consensus       194 ~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~  268 (787)
                      .|-.|.|+|  +++|+- .|..|++|+..+....+++..+-..   +.+.    .-+..+.++|  .+||.+.       
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~---~~~~----T~f~RlSWSPDG~~las~n-------  238 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE---SPLT----TFFLRLSWSPDGHHLASPN-------  238 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---CCCc----ceeeecccCCCcCeecchh-------
Confidence            899999999  899985 4567999998877776766542210   0000    0011122222  2222211       


Q ss_pred             cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (787)
Q Consensus       269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d  348 (787)
                                                                                   ++             -...
T Consensus       239 -------------------------------------------------------------A~-------------n~~~  244 (942)
T KOG0973|consen  239 -------------------------------------------------------------AV-------------NGGK  244 (942)
T ss_pred             -------------------------------------------------------------hc-------------cCCc
Confidence                                                                         00             0112


Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCC--------CC---------EEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------GT---------LLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd--------G~---------lLATaS~dG~~IrVWdi~~~~~~~~~g~~  411 (787)
                      -++.|.+-.+-+.-..|-+|.+|+.+++|+|.        |+         .+|+||.|+ .|-||....          
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~----------  313 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTAL----------  313 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCC----------
Confidence            34566666555666788999999999999982        11         578888865 599999732          


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                             .+++...+. .....|.||+|||||.-|.++|.||||.++.+++
T Consensus       314 -------~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  314 -------PRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             -------CCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                   144544332 2235699999999999999999999999998864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=4.3e-13  Score=138.54  Aligned_cols=204  Identities=20%  Similarity=0.229  Sum_probs=151.2

Q ss_pred             eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (787)
Q Consensus        98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl  177 (787)
                      ...+++|.+.|..+++.|.            +.-+||.  |+                               .+++||+
T Consensus         7 ~~~~~gh~~r~W~~awhp~------------~g~ilAs--cg-------------------------------~Dk~vri   41 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPG------------KGVILAS--CG-------------------------------TDKAVRI   41 (312)
T ss_pred             EEeecCCCCcEEEEEeccC------------CceEEEe--ec-------------------------------CCceEEE
Confidence            4567888889999999873            1225654  21                               1379999


Q ss_pred             EECCC---CeEEEEEe--CCCcEEEEEecC--CeEEEE-eCCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 003907          178 YSFQS---HCYEHVLR--FRSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       178 Wdlkt---g~~v~tL~--f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~--T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      |++..   -.+...|.  +.-.|++|+++|  ++||++ ++.++.||.=.  ++++..+|++|.+.             +
T Consensus        42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------------V  108 (312)
T KOG0645|consen   42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------------V  108 (312)
T ss_pred             EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------e
Confidence            99984   34555553  335899999988  888875 57789999643  56788888888873             2


Q ss_pred             ceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       248 ~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                      -.+|+++  +|||.++.                                                               
T Consensus       109 K~Vaws~sG~~LATCSR---------------------------------------------------------------  125 (312)
T KOG0645|consen  109 KCVAWSASGNYLATCSR---------------------------------------------------------------  125 (312)
T ss_pred             eEEEEcCCCCEEEEeeC---------------------------------------------------------------
Confidence            3566665  66666553                                                               


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s---~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                                            |..|-||.+..   -.++..|+.|+..|-.+.|+|.-.+|+|+|-|. +|++|+-.+.
T Consensus       126 ----------------------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~d  182 (312)
T KOG0645|consen  126 ----------------------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDD  182 (312)
T ss_pred             ----------------------CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCC
Confidence                                  34566776653   357889999999999999999999999999955 5999986421


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                            +        ...++.+|. |++ ..|++++|+++|..|+++++|+|++||.+-
T Consensus       183 ------d--------dW~c~~tl~-g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  183 ------D--------DWECVQTLD-GHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ------C--------CeeEEEEec-Ccc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence                  1        124666664 433 479999999999999999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=4.8e-14  Score=151.88  Aligned_cols=282  Identities=15%  Similarity=0.148  Sum_probs=179.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      ..+|+|+|-++.|--       .++.|++++.+. .-+|++.....  +..++-+|..+|..+.++|+            
T Consensus       220 l~~htdEVWfl~FS~-------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD------------  280 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSH-------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD------------  280 (519)
T ss_pred             HhhCCCcEEEEEEcC-------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC------------
Confidence            567999999999953       589999999875 78899866554  24556678889999999985            


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--Ce
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RI  204 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~  204 (787)
                      .|.|| .++.+                                 ..+++||..+|+..+.+...  -++.++++.|  ..
T Consensus       281 dryLl-aCg~~---------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~  326 (519)
T KOG0293|consen  281 DRYLL-ACGFD---------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR  326 (519)
T ss_pred             CCeEE-ecCch---------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence            34454 22221                                 35999999999999988755  4788888888  45


Q ss_pred             EEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907          205 VAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       205 LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      +++| .+.+|.-||+. +..+..-.+--.|            -...+|+.+  +|+-....+..+.-             
T Consensus       327 ~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~------------~v~dlait~Dgk~vl~v~~d~~i~l-------------  380 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLD-GNILGNWEGVRDP------------KVHDLAITYDGKYVLLVTVDKKIRL-------------  380 (519)
T ss_pred             eEecCCCCcEEEecCC-cchhhcccccccc------------eeEEEEEcCCCcEEEEEecccceee-------------
Confidence            5555 46689999965 4333333221111            023466655  44433322211100             


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                  ..+.|+     +-.|++..          +.-..+.+.+-+++..    ...-.+..+++||+...+.
T Consensus       381 ------------~~~e~~-----~dr~lise----------~~~its~~iS~d~k~~----LvnL~~qei~LWDl~e~~l  429 (519)
T KOG0293|consen  381 ------------YNREAR-----VDRGLISE----------EQPITSFSISKDGKLA----LVNLQDQEIHLWDLEENKL  429 (519)
T ss_pred             ------------echhhh-----hhhccccc----------cCceeEEEEcCCCcEE----EEEcccCeeEEeecchhhH
Confidence                        000000     00011100          0000001111122221    1123567899999999999


Q ss_pred             EEEeccCCCC--eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          362 ISQFKAHTSP--ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       362 v~~~~aH~~p--IsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                      +..+.+|+..  |-.-||-- +.+++|+||+|++ |.||+-..       |          ..+.+|. |+. ..|.+++
T Consensus       430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~Ls-GHs-~~vNcVs  489 (519)
T KOG0293|consen  430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVLS-GHS-KTVNCVS  489 (519)
T ss_pred             HHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEeec-CCc-ceeeEEe
Confidence            9999999653  44447754 5689999999665 99999754       3          4666774 543 5699999


Q ss_pred             EccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907          439 FSHYS-QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       439 FSpDg-~~LAs~S~dgTVhIwdl~~~  463 (787)
                      |+|.. .++|++|+||||+||...+.
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99965 78999999999999988754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.5e-13  Score=144.03  Aligned_cols=242  Identities=17%  Similarity=0.252  Sum_probs=153.6

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      .+...|+-+.|--       ..+++..|.++-++++|++. + -...+..|+++|++|+..+.           ..  .+
T Consensus        52 ~~~~plL~c~F~d-------~~~~~~G~~dg~vr~~Dln~-~-~~~~igth~~~i~ci~~~~~-----------~~--~v  109 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-------ESTIVTGGLDGQVRRYDLNT-G-NEDQIGTHDEGIRCIEYSYE-----------VG--CV  109 (323)
T ss_pred             ecCCceeeeeccC-------CceEEEeccCceEEEEEecC-C-cceeeccCCCceEEEEeecc-----------CC--eE
Confidence            4667788888852       23455555555699999954 4 35678899999999998841           12  33


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCe
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQ  212 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~  212 (787)
                        ++|                     +||          ++|+|||.+....+.++.-...|+++..+.++|+||. +.+
T Consensus       110 --Isg---------------------sWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~  156 (323)
T KOG1036|consen  110 --ISG---------------------SWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK  156 (323)
T ss_pred             --EEc---------------------ccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence              343                     444          6999999998777777777789999999999999955 568


Q ss_pred             EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc
Q 003907          213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS  292 (787)
Q Consensus       213 I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~  292 (787)
                      +.+||+++++..++..+.+..           +.+..+++-|.-=.|+-+.    --||+                    
T Consensus       157 v~iyDLRn~~~~~q~reS~lk-----------yqtR~v~~~pn~eGy~~sS----ieGRV--------------------  201 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLK-----------YQTRCVALVPNGEGYVVSS----IEGRV--------------------  201 (323)
T ss_pred             EEEEEcccccchhhhccccce-----------eEEEEEEEecCCCceEEEe----ecceE--------------------
Confidence            999999999877765554332           2233444433111111000    01222                    


Q ss_pred             eeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe
Q 003907          293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI  372 (787)
Q Consensus       293 lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pI  372 (787)
                       ++.+--++  +-+  ..|++...|++...                         +++-.                --||
T Consensus       202 -avE~~d~s--~~~--~skkyaFkCHr~~~-------------------------~~~~~----------------~yPV  235 (323)
T KOG1036|consen  202 -AVEYFDDS--EEA--QSKKYAFKCHRLSE-------------------------KDTEI----------------IYPV  235 (323)
T ss_pred             -EEEccCCc--hHH--hhhceeEEeeeccc-------------------------CCceE----------------EEEe
Confidence             11111110  000  00233333332110                         11100                1389


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      ++|+|+|--..||||+.||- |.+||+.+.                 .++.+|.+-  ...|.+++|+.||..||++++
T Consensus       236 Nai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  236 NAIAFHPIHGTFATGGSDGI-VNIWDLFNR-----------------KRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceeEeccccceEEecCCCce-EEEccCcch-----------------hhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            99999998888999999774 999998541                 466666542  235999999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=5.3e-14  Score=162.26  Aligned_cols=212  Identities=13%  Similarity=0.185  Sum_probs=151.1

Q ss_pred             CEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|++||-+=|.+++.+. +.++|+.|.|.+  -+++.|.|+ +|++|+..+-+++++|.+|-.=             ..
T Consensus        31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------VR   97 (1202)
T KOG0292|consen   31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------VR   97 (1202)
T ss_pred             ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------eE
Confidence            589999999999999885 557999999988  466666655 7999999999999999887541             11


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .+.|.+.                                                                 +|      
T Consensus        98 t~~FHhe-----------------------------------------------------------------yP------  106 (1202)
T KOG0292|consen   98 TVFFHHE-----------------------------------------------------------------YP------  106 (1202)
T ss_pred             EeeccCC-----------------------------------------------------------------Cc------
Confidence            2222110                                                                 00      


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                            |      +.+++.|.+|+||+..++++++.+.+|..-|.|..|+|...++++||-|- +|||||+.-....+..
T Consensus       107 ------W------IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-TVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen  107 ------W------ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-TVRVWDISGLRKKNKA  173 (1202)
T ss_pred             ------e------EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-eEEEEeecchhccCCC
Confidence                  0      12345688999999999999999999999999999999999999999955 5999998532111100


Q ss_pred             -C--------CC-ccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC-c-cccccccC
Q 003907          409 -G--------NH-KYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG-D-SGFQTLSS  474 (787)
Q Consensus       409 -g--------~~-~~~~~~--s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg-~-~~~~~H~~  474 (787)
                       |        .. ..++-+  ...-.+.| .|++++ |.-++|.|.--.|++|++|.-|++|.++..+. + -+-++|..
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n  251 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN  251 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence             0        00 011111  11122233 465544 88899999999999999999999999986544 2 24578876


Q ss_pred             CCCCCcccC
Q 003907          475 QGGDPYLFP  483 (787)
Q Consensus       475 ~~~~~~~~~  483 (787)
                      .+.+-.+.|
T Consensus       252 nVssvlfhp  260 (1202)
T KOG0292|consen  252 NVSSVLFHP  260 (1202)
T ss_pred             CcceEEecC
Confidence            665555554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.57  E-value=1.9e-13  Score=150.56  Aligned_cols=111  Identities=16%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             ccccCCCceEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          342 GADMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~-~v~~~~-----aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      +.+++.||+++|||+.+-+ ....|+     +-.-+++.++|+|||+++|+|..||. |.+|+....      .      
T Consensus       284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------~------  350 (641)
T KOG0772|consen  284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------T------  350 (641)
T ss_pred             eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------c------
Confidence            4578899999999997643 223332     23458899999999999999999886 999997321      1      


Q ss_pred             CCcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907          416 NSSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~  468 (787)
                         .+..+..+..+.. ..|+||+||+||++|++-+.|+|++||||..+..+..
T Consensus       351 ---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  351 ---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             ---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence               1233334333322 2699999999999999999999999999998766543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.57  E-value=3.1e-13  Score=147.56  Aligned_cols=110  Identities=18%  Similarity=0.370  Sum_probs=82.7

Q ss_pred             cccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--ccC-C
Q 003907          343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWN-S  417 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~--~~~-~  417 (787)
                      ++++.|++|.+||+++. +++.+|.+|...|..|.|||. .+.|||++.|++ +.|||+..-      |....  +.. .
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dg  361 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDG  361 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccC
Confidence            34567999999999985 478899999999999999995 778999999776 899999542      11100  001 1


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCE-EEEEeCCCeEEEEeCC
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS  461 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~-LAs~S~dgTVhIwdl~  461 (787)
                      -...++ .++| |.+.|.+++|+|.--| ||+++.|+.++||.+.
T Consensus       362 ppEllF-~HgG-H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  362 PPELLF-IHGG-HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcceeE-EecC-cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            112333 3566 4578999999998866 6778899999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.56  E-value=5.9e-13  Score=142.60  Aligned_cols=221  Identities=15%  Similarity=0.167  Sum_probs=154.8

Q ss_pred             EEEEEecC-cEEEEEccCCCceeEee---eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           77 VLLLGYQN-GFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        77 vL~lG~~~-G~qVWdv~~~~~~~ell---s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .|+++..+ .+++|-.+...++.+.+   .+|.++|.+|.+.++.           .  .+  +++              
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-----------t--r~--~Sg--------------  211 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-----------T--RF--CSG--------------  211 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-----------C--eE--Eee--------------
Confidence            45555554 69999987765555443   3688899999988542           2  22  222              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEEC-------------------------CCCeEEEEEeCC-CcEEEEEecCC--e
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSF-------------------------QSHCYEHVLRFR-SSVCMVRCSPR--I  204 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdl-------------------------ktg~~v~tL~f~-s~V~sV~~s~~--~  204 (787)
                             +|          +++|+||+.                         .++..+.+|..| .+|.+|-|++.  .
T Consensus       212 -------S~----------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~  274 (423)
T KOG0313|consen  212 -------SW----------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI  274 (423)
T ss_pred             -------cc----------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence                   33          378999982                         123345556544 58999999884  3


Q ss_pred             EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907          205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       205 LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      ..++.|.+|+.||+.++++.-++.+...              ++.++.+|  ++||                        
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~------------------------  316 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLA------------------------  316 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceee------------------------
Confidence            3356688999999999998888776322              22333332  2222                        


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc--
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--  360 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--  360 (787)
                                                                                   .++.|..+++||-+++.  
T Consensus       317 -------------------------------------------------------------~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  317 -------------------------------------------------------------SGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             -------------------------------------------------------------ecCCCCceeecCCCCCCCc
Confidence                                                                         23456678888887653  


Q ss_pred             -EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          361 -IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       361 -~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                       +..+|.+|+..|.++.++|... +|+++|.|++ +++||++..                ..++|.+.+  +...|.++.
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~----------------k~plydI~~--h~DKvl~vd  396 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST----------------KAPLYDIAG--HNDKVLSVD  396 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC----------------CCcceeecc--CCceEEEEe
Confidence             5678999999999999999655 6888888665 999999642                137899976  456899999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCC
Q 003907          439 FSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       439 FSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      |+ ++..|++|+.|.+++||.-.+
T Consensus       397 W~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  397 WN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             cc-CCceEEeccCcceEEEecccc
Confidence            98 567899999999999997654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.56  E-value=4.5e-13  Score=138.13  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=136.2

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      .++.+|-..+|+.+.+++.+ +.|++++.+.  +.|+++. ++.+++||+.|++.+.++.+.. |             ..
T Consensus        32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~-~-------------Vk   97 (327)
T KOG0643|consen   32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS-P-------------VK   97 (327)
T ss_pred             CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC-e-------------eE
Confidence            46789999999999999976 5898887765  6777765 4569999999999999987521 1             12


Q ss_pred             eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      .+.|++  .++.+..+.                                                               
T Consensus        98 ~~~F~~~gn~~l~~tD~---------------------------------------------------------------  114 (327)
T KOG0643|consen   98 RVDFSFGGNLILASTDK---------------------------------------------------------------  114 (327)
T ss_pred             EEeeccCCcEEEEEehh---------------------------------------------------------------
Confidence            233322  222222111                                                               


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-------s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                                       ...+.+.|.++|++       +.++...+..+.+.|+.+-|+|-|.+|++|.++|. |++||+
T Consensus       115 -----------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da  176 (327)
T KOG0643|consen  115 -----------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDA  176 (327)
T ss_pred             -----------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEc
Confidence                             01234567777776       45678888899999999999999999999999886 999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~  471 (787)
                      +.       |          ..+.+-.+ .+...|.+|.||+|..++.++|.|.|.++||+........+.+
T Consensus       177 ~~-------g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  177 RT-------G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             cc-------C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence            65       3          22322222 2345799999999999999999999999999987655554443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.9e-13  Score=140.07  Aligned_cols=229  Identities=16%  Similarity=0.162  Sum_probs=153.4

Q ss_pred             EEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 003907           86 FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ  164 (787)
Q Consensus        86 ~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~  164 (787)
                      +-|.+++..+.+.+..+-. ...+..|++.++-          .+  .+++++||                         
T Consensus        40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~----------e~--~~~~a~GD-------------------------   82 (311)
T KOG0277|consen   40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENH----------EN--QVIAASGD-------------------------   82 (311)
T ss_pred             EEEEecCCCCCeEEEEeeecccceeEeeecCCC----------cc--eEEEEecC-------------------------
Confidence            6677775455566655532 2468888888642          22  44444443                         


Q ss_pred             CCCCCCCCCEEEEEECCC-CeEEEEEe-CCCcEEEEEecC---C-eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCC
Q 003907          165 SGNCVNSPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQ  238 (787)
Q Consensus       165 ~~~~~~~p~tVrlWdlkt-g~~v~tL~-f~s~V~sV~~s~---~-~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~  238 (787)
                              +.++|||+.- ...|+.++ +..+|++|.+|.   + +|..+-|++|++||..-.+-+.|+.+|..      
T Consensus        83 --------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------  148 (311)
T KOG0277|consen   83 --------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------  148 (311)
T ss_pred             --------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence                    4799999743 35677775 446999999987   3 34445688999999776665555554322      


Q ss_pred             CccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccc
Q 003907          239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ  318 (787)
Q Consensus       239 ~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~  318 (787)
                                        +.|..                       .++|..+.+                         
T Consensus       149 ------------------~Iy~a-----------------------~~sp~~~nl-------------------------  162 (311)
T KOG0277|consen  149 ------------------CIYQA-----------------------AFSPHIPNL-------------------------  162 (311)
T ss_pred             ------------------EEEEE-----------------------ecCCCCCCe-------------------------
Confidence                              11211                       011111111                         


Q ss_pred             ccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEE
Q 003907          319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIF  397 (787)
Q Consensus       319 ~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVW  397 (787)
                                             +++++.||++++||++....-..|.+|...|.++.|+. +-.+|||++.|+ .||+|
T Consensus       163 -----------------------fas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~w  218 (311)
T KOG0277|consen  163 -----------------------FASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGW  218 (311)
T ss_pred             -----------------------EEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEE
Confidence                                   23456799999999987544445999999999999987 677899999955 69999


Q ss_pred             eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC-cccccccc
Q 003907          398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLS  473 (787)
Q Consensus       398 di~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg-~~~~~~H~  473 (787)
                      |++..      .          .++.+|. |+. -.|..+.|||-. ..||++|.|-|++|||...... ......|+
T Consensus       219 Dir~~------r----------~pl~eL~-gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  219 DIRNL------R----------TPLFELN-GHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             ehhhc------c----------ccceeec-CCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            99652      1          4788884 433 359999999965 6899999999999999874333 22334443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.55  E-value=8.5e-14  Score=164.60  Aligned_cols=248  Identities=15%  Similarity=0.079  Sum_probs=165.7

Q ss_pred             ccccC--CCceEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          342 GADMD--NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       342 ~~s~~--~dG~V~IwDl~s------------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                      +++++  .||.++||....            .+.+.++..|.+.|+|+.|+|||++||+||+ ++.|.||+-........
T Consensus        28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~  106 (942)
T KOG0973|consen   28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD-DRLVMIWERAEIGSGTV  106 (942)
T ss_pred             EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC-cceEEEeeecccCCccc
Confidence            34555  678888998642            3456778899999999999999999999999 56799999753100000


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC---------
Q 003907          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD---------  478 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~---------  478 (787)
                      .|..+..-....++.+...|| |...|.+++||||+.+||++|.|++|+||+..+++....+++|.+.++|         
T Consensus       107 fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky  185 (942)
T KOG0973|consen  107 FGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY  185 (942)
T ss_pred             ccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCe
Confidence            011000011111233334456 4467999999999999999999999999999999777788888766533         


Q ss_pred             -------------------------CcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCC-cccc---ccc
Q 003907          479 -------------------------PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG-WLNT---VSN  529 (787)
Q Consensus       479 -------------------------~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~-w~~~---v~~  529 (787)
                                               .++..+...+++.+.+||++.++++.|++ +.++.+.|.+-.++ |.-.   |+-
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-~n~~~~~~~IieR~tWk~~~~LvGH  264 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-VNGGKSTIAIIERGTWKVDKDLVGH  264 (942)
T ss_pred             eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh-ccCCcceeEEEecCCceeeeeeecC
Confidence                                     33444566788899999999999999998 45887777776554 7632   222


Q ss_pred             cccc--------------cCCcccccc--ceeeeecccCcc-----cccc-c-------c------ccccCccccEEEEc
Q 003907          530 ASAS--------------SMGKVFVPS--GAVAAVFHNSIA-----HSSQ-H-------V------NSRTNSLEHLLVYT  574 (787)
Q Consensus       530 ~~~~--------------a~~~~~~p~--~~v~~~f~~~~~-----~~~~-~-------~------~~~~~~~~~LlV~s  574 (787)
                      .+.-              ..|.+.-|.  -+|+|+=.|+|.     +... |       .      .+=.+.--.||++|
T Consensus       265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence            1110              011111121  136777777765     1110 0       0      11123446799999


Q ss_pred             CCccEEEEecccCCCCCC
Q 003907          575 PSGYVVQHELLPSIGMGP  592 (787)
Q Consensus       575 ~~G~l~~y~l~p~~g~~~  592 (787)
                      -||.|++..+++.+=|+.
T Consensus       345 ~DGtV~~i~Fee~ElG~~  362 (942)
T KOG0973|consen  345 LDGTVALIHFEEKELGVA  362 (942)
T ss_pred             cCCeEEEEEcchHHhCcc
Confidence            999999999998876653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.54  E-value=8.6e-13  Score=141.38  Aligned_cols=114  Identities=14%  Similarity=0.176  Sum_probs=90.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +++.|.+|++||+.++..+.++.+. .++++++.+|.-.+||+||. +..|||||-+..     .|.         ....
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss-dr~irl~DPR~~-----~gs---------~v~~  339 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS-DRHIRLWDPRTG-----DGS---------VVSQ  339 (423)
T ss_pred             eecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC-CCceeecCCCCC-----CCc---------eeEE
Confidence            5678999999999999988888764 68999999999999999999 556999996541     121         2333


Q ss_pred             EEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC-ccccccccCC
Q 003907          424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLSSQ  475 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg-~~~~~~H~~~  475 (787)
                      .| -|+. ..|.++.|+|.. ..|+++|.|+|+++||+....+ ...+.+|+..
T Consensus       340 s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  340 SL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             ee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence            44 3544 579999999976 5689999999999999988764 4577888654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.53  E-value=3.6e-12  Score=147.09  Aligned_cols=121  Identities=20%  Similarity=0.267  Sum_probs=87.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cCC-CCC--C--cc-
Q 003907          344 DMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RSG-SGN--H--KY-  413 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~~-~g~--~--~~-  413 (787)
                      -+...|+|.+|++++|-....|   .+|..+|..|+.+.-+++++||+.+|. ++.||.....- .+. .|.  .  .+ 
T Consensus       465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~h  543 (910)
T KOG1539|consen  465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYH  543 (910)
T ss_pred             EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeee
Confidence            3566899999999999998998   699999999999999999999999885 99999854210 000 000  0  00 


Q ss_pred             ---c-----cCCcceEEEEE--------ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          414 ---D-----WNSSHVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       414 ---~-----~~~s~~~l~~l--------~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                         +     .+.....+++.        .+|+ ...|++++|||||+||++++.|+||++||+.+....
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence               0     00000111111        1353 467999999999999999999999999999875443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.53  E-value=6.2e-14  Score=151.28  Aligned_cols=247  Identities=12%  Similarity=0.084  Sum_probs=167.4

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      -|..+|.-+-|-.       ....|+.|..+ -|++|++.... ++..+|.+..|++..+.+-+.            .+.
T Consensus       173 ~h~gev~~v~~l~-------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~------------~~~  233 (459)
T KOG0288|consen  173 AHEGEVHDVEFLR-------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD------------NKH  233 (459)
T ss_pred             ccccccceeEEcc-------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC------------Cce
Confidence            3445555555542       12367777665 48999995422 244566777788999988742            222


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCe--EEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRI--VAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~~~--LaV~  208 (787)
                      .||.  +                                .++.+++|++.+.+..++|..|+ .|+++.+....  ++.+
T Consensus       234 ~iAa--s--------------------------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg  279 (459)
T KOG0288|consen  234 VIAA--S--------------------------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG  279 (459)
T ss_pred             EEee--c--------------------------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeec
Confidence            4432  1                                13689999999999999998774 99999997632  3333


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      . +.+|++||+....+..++.--..              .+-+.+       ..                          
T Consensus       280 s~DRtiK~WDl~k~~C~kt~l~~S~--------------cnDI~~-------~~--------------------------  312 (459)
T KOG0288|consen  280 SADRTIKLWDLQKAYCSKTVLPGSQ--------------CNDIVC-------SI--------------------------  312 (459)
T ss_pred             cccchhhhhhhhhhheecccccccc--------------ccceEe-------cc--------------------------
Confidence            3 45799999987665444321000              000110       00                          


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a  367 (787)
                                                                          ..+.++..|+.|+.||.++......+..
T Consensus       313 ----------------------------------------------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  313 ----------------------------------------------------SDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             ----------------------------------------------------eeeeecccccceEEEeccCCceeeEeec
Confidence                                                                0012456788999999999999999988


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA  447 (787)
                      |. .|++|..+++|..|.+++.|++ +.++|+...      .         ..+.+.-..-.+....+.+.||||+.|+|
T Consensus       341 gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~------e---------I~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  341 GG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTK------E---------IRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             Cc-ceeeEeeccCCeEEeeecCCCc-eeeeecccc------c---------EEEEeeccccccccccceeEECCCCceee
Confidence            85 9999999999999999999775 999998642      1         12333221111223578899999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCcccc
Q 003907          448 IVSSKGTCHVFVLSPFGGDSGF  469 (787)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~~  469 (787)
                      +||.||.|+||++...+.+..+
T Consensus       404 AGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             eccCCCcEEEEEccCceEEEEe
Confidence            9999999999999876655443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.53  E-value=5.6e-13  Score=139.42  Aligned_cols=264  Identities=16%  Similarity=0.170  Sum_probs=171.9

Q ss_pred             Ccceeeehhhcccccceeccc-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcE
Q 003907           30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV  108 (787)
Q Consensus        30 ~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V  108 (787)
                      |++=..|||--....+|.... ....+...|+.++|..    |+  .++++.|.++..++||+.. +++ ..+.-|++||
T Consensus        45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dg--skVf~g~~Dk~~k~wDL~S-~Q~-~~v~~Hd~pv  116 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DG--SKVFSGGCDKQAKLWDLAS-GQV-SQVAAHDAPV  116 (347)
T ss_pred             ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CC--ceEEeeccCCceEEEEccC-CCe-eeeeecccce
Confidence            445556666654444333322 2344677899999964    31  4566666667799999964 444 5678999999


Q ss_pred             EEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 003907          109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV  188 (787)
Q Consensus       109 ~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~t  188 (787)
                      +.+.+.+.+.           -++|  ++                     |+||          ++|++||+++...+.+
T Consensus       117 kt~~wv~~~~-----------~~cl--~T---------------------GSWD----------KTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen  117 KTCHWVPGMN-----------YQCL--VT---------------------GSWD----------KTLKFWDTRSSNPVAT  152 (347)
T ss_pred             eEEEEecCCC-----------ccee--Ee---------------------cccc----------cceeecccCCCCeeee
Confidence            9999997532           1244  23                     4565          6999999999999999


Q ss_pred             EeCCCcEEEEEecCCeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 003907          189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL  265 (787)
Q Consensus       189 L~f~s~V~sV~~s~~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~  265 (787)
                      ++.+.+||+.++-..+++|++.+ .|.+|++......+.....|..           .....+|+-.  .--|.++    
T Consensus       153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-----------~Q~R~va~f~d~~~~alGs----  217 (347)
T KOG0647|consen  153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-----------WQTRCVACFQDKDGFALGS----  217 (347)
T ss_pred             eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-----------ceeeEEEEEecCCceEeee----
Confidence            99999999999998999998865 5999999776543333333321           1233344322  0001111    


Q ss_pred             ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC-CCcccCCccccccccccc
Q 003907          266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS-SPVSPNSVWKVGRHAGAD  344 (787)
Q Consensus       266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~-~~~s~s~~~~~~~~~~~s  344 (787)
                        --|++..|.+-.+.                      +     .+.|+..|++..-.... .....+..+.+...++++
T Consensus       218 --iEGrv~iq~id~~~----------------------~-----~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  218 --IEGRVAIQYIDDPN----------------------P-----KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             --ecceEEEEecCCCC----------------------c-----cCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence              11444333322100                      0     13445556552211111 222333445556667888


Q ss_pred             cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 003907          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV  389 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~  389 (787)
                      ++.||+...||-.....+.+.+.|..||+|.+|+.+|.++|-|..
T Consensus       269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            999999999999888888888899999999999999999998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.53  E-value=3.1e-13  Score=147.50  Aligned_cols=106  Identities=18%  Similarity=0.297  Sum_probs=88.8

Q ss_pred             ccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          344 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       344 s~~~dG~V~IwDl~--s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      +...|+.+.|||++  +.++....++|+.+|+|++|+| ++.+|||||.|++ |++||++..      .          .
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~  307 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K  307 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence            45679999999999  5667778899999999999999 6889999999776 999999652      1          3


Q ss_pred             EEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCccc
Q 003907          421 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~~  468 (787)
                      +++.+. | +...|..+.|||+- ..||+++.|+.++|||+...+++..
T Consensus       308 ~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  308 PLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             Cceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            667775 3 44679999999975 7899999999999999998887754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=1.7e-13  Score=154.36  Aligned_cols=103  Identities=17%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +.++..+.+++||.++++.+..|+||+..|.+|-.++||+.++|||.||+ |||||+...                 +++
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ-----------------rCl  248 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ-----------------RCL  248 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc-----------------cee
Confidence            35677899999999999999999999999999999999999999999886 999999421                 567


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      .++.-  +...|+++.-+|+=+.+.+|+.||.|..=|+..+..
T Consensus       249 ~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  249 ATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            66653  334599999999999999999999999988887633

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.52  E-value=1.5e-12  Score=148.69  Aligned_cols=301  Identities=14%  Similarity=0.119  Sum_probs=201.4

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcee--------EeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~--------ells~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      +.+|.|+..-.    ++...+.|++=.++.+..|.++..+.-.        -.+.+|...|+.+.+.-            
T Consensus       320 ~~kiks~dv~~----~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~------------  383 (888)
T KOG0306|consen  320 SAKIKSFDVTP----SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS------------  383 (888)
T ss_pred             hhheeEEEEEe----cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec------------
Confidence            45566654432    2222356666557789999997743320        11234556688888763            


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV  205 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L  205 (787)
                       +.-++  .++.                                ...++||+.++++++.++... -+++..|-|  +.+
T Consensus       384 -d~~~~--~Sga--------------------------------~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  384 -DSILL--ASGA--------------------------------GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI  427 (888)
T ss_pred             -Cceee--eecC--------------------------------CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence             21133  2221                                146999999999999999876 677777766  677


Q ss_pred             EEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCcceeccccCCCC
Q 003907          206 AVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       206 aV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~--~~l~~~g~~s~q~lt~~  280 (787)
                      ++|.+ +.+.+||+....++.++..|...             ..+++++|  +..+.++.+  ..+|...-+        
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdga-------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~--------  486 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDGA-------------IWSISLSPDNKGFVTGSADKTVKFWDFKLV--------  486 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhccccc-------------eeeeeecCCCCceEEecCCcEEEEEeEEEE--------
Confidence            77775 46999999999888888766542             46889988  666666544  233322111        


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc-cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~-l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                           ++ .+|+.         +       |.++-.-.+ +--.........+|+++....    +--|.+|+||-+.+.
T Consensus       487 -----~~-~~gt~---------~-------k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  487 -----VS-VPGTQ---------K-------KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTL  540 (888)
T ss_pred             -----ec-cCccc---------c-------eeeeeccceEEeccccEEEEEEcCCCcEEEE----EeccCeEEEEEecce
Confidence                 00 00000         0       001000000 111223445666777776553    345789999999999


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (787)
                      +.--.+-+|.-||.||.+|||+++++|||. |++|+||-+.-       |.          +-..+. + |...|.++.|
T Consensus       541 KFflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGLdF-------GD----------CHKS~f-A-HdDSvm~V~F  600 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF-------GD----------CHKSFF-A-HDDSVMSVQF  600 (888)
T ss_pred             eeeeeecccccceeEEeccCCcCeEEeccC-CCceEEecccc-------ch----------hhhhhh-c-ccCceeEEEE
Confidence            999999999999999999999999999999 55699998743       31          222232 2 3456999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       440 SpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                      -|+...+.+++.|+.|+-||-..+.....+.+|...
T Consensus       601 ~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             cccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence            999999999999999999999999998889888644

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.52  E-value=3.5e-12  Score=147.27  Aligned_cols=95  Identities=22%  Similarity=0.349  Sum_probs=80.2

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      .+..|-.|+|+|..+.++++.|.+|...|++++|||||+.|++|+.|++ ||+||+-+       |          ..+-
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lID  612 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLID  612 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------ceee
Confidence            4456778999999999999999999999999999999999999999776 99999954       2          2343


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEe
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFV  459 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwd  459 (787)
                      -+.   ......+++|||+|.+||++..| .-|.+|.
T Consensus       613 ~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  613 GLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            332   23467899999999999999988 5699996

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=9e-13  Score=144.00  Aligned_cols=281  Identities=17%  Similarity=0.248  Sum_probs=168.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEee-e--eccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELV-S--KRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ell-s--~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ....|+.+.|..      ....+|+.|+++.++||.++  |++...+ +  ...-|+.++.+.|+.....   -+++-|+
T Consensus       212 s~~~I~sv~FHp------~~plllvaG~d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i---~~s~rrk  280 (514)
T KOG2055|consen  212 SHGGITSVQFHP------TAPLLLVAGLDGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAEFAPNGHSVI---FTSGRRK  280 (514)
T ss_pred             CcCCceEEEecC------CCceEEEecCCCcEEEEEec--CccChhheeeeeccCccceeeecCCCceEE---Eecccce
Confidence            346788888874      12445556666669999994  4443333 2  3457899999888643110   0112223


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcC----CCCCCCC---CCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD----SQSGNCV---NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--  202 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~----~~~~~~~---~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--  202 (787)
                      ++-+---...+ -   +......++..-+++    .+.++++   .-.+.|.|-..+|++.+++++..+.|.++.|+.  
T Consensus       281 y~ysyDle~ak-~---~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  281 YLYSYDLETAK-V---TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS  356 (514)
T ss_pred             EEEEeeccccc-c---ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence            32210000000 0   000000000000000    0001111   123689999999999999999999999999975  


Q ss_pred             -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc--cceEEEecCCceecCcceeccccCCC
Q 003907          203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       203 -~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls--pr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                       .+++++.+++|++||+.+..++++......          +  ....++++  ++|||.+++                 
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~----------v--~gts~~~S~ng~ylA~GS~-----------------  407 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGS----------V--HGTSLCISLNGSYLATGSD-----------------  407 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCc----------c--ceeeeeecCCCceEEeccC-----------------
Confidence             467777788999999999988888764221          0  01223333  256666553                 


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC--
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--  357 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~--  357 (787)
                                                                                          .|.|.|||..  
T Consensus       408 --------------------------------------------------------------------~GiVNIYd~~s~  419 (514)
T KOG2055|consen  408 --------------------------------------------------------------------SGIVNIYDGNSC  419 (514)
T ss_pred             --------------------------------------------------------------------cceEEEeccchh
Confidence                                                                                3445555532  


Q ss_pred             ----CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          358 ----TRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       358 ----s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                          +.+++..+..-+..|+.|+|+||+.+||-||.. ...+|+--+ |.+      +....|...         +..-.
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~------TVFsNfP~~---------n~~vg  483 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSC------TVFSNFPTS---------NTKVG  483 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cce------eeeccCCCC---------CCccc
Confidence                245666666667889999999999999999862 234777665 321      111222221         11223


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .|+||+|||.|-+||.|..+|.+++|.|+.|
T Consensus       484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy  514 (514)
T KOG2055|consen  484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY  514 (514)
T ss_pred             ceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence            5899999999999999999999999998753

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.51  E-value=1.4e-12  Score=141.70  Aligned_cols=225  Identities=15%  Similarity=0.216  Sum_probs=157.3

Q ss_pred             eEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      ..+++|..+ ..-++|.+ .+....++.+|.-.|..+.+.|+               +.++..+                
T Consensus       232 ~~ilTGG~d~~av~~d~~-s~q~l~~~~Gh~kki~~v~~~~~---------------~~~v~~a----------------  279 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKP-SNQILATLKGHTKKITSVKFHKD---------------LDTVITA----------------  279 (506)
T ss_pred             CcceecCCCCceEEEecc-hhhhhhhccCcceEEEEEEeccc---------------hhheeec----------------
Confidence            455566565 79999984 57788889999988888887764               1122111                


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEec
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~  230 (787)
                                     ..+..+++|+.-.......+. +.++|..+...+  .+|..+ .++...+.|+.++.++......
T Consensus       280 ---------------Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  280 ---------------SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             ---------------CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence                           123589999998776665555 446898888876  566655 4556777889998765544321


Q ss_pred             CCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~  310 (787)
                      .+         +  +.+...+|.|.-|-+                                                   
T Consensus       345 ~s---------~--v~~ts~~fHpDgLif---------------------------------------------------  362 (506)
T KOG0289|consen  345 TS---------D--VEYTSAAFHPDGLIF---------------------------------------------------  362 (506)
T ss_pred             cc---------c--ceeEEeeEcCCceEE---------------------------------------------------
Confidence            11         0  123333333211111                                                   


Q ss_pred             eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 003907          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (787)
Q Consensus       311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d  390 (787)
                                                      ..+..||.|+|||+.++..++.|.+|++||.+|+|+.+|.+|||+.+|
T Consensus       363 --------------------------------gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  363 --------------------------------GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD  410 (506)
T ss_pred             --------------------------------eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence                                            234568999999999999999999999999999999999999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      |. |++||++...               ..+.+.+..   ...|.+++|.+.|++|++++.|=+|++++-
T Consensus       411 ~~-V~lwDLRKl~---------------n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  411 GS-VKLWDLRKLK---------------NFKTIQLDE---KKEVNSLSFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             Ce-EEEEEehhhc---------------ccceeeccc---cccceeEEEcCCCCeEEeecceeEEEEEec
Confidence            76 9999996420               012223321   225899999999999999998888887763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.7e-12  Score=136.45  Aligned_cols=262  Identities=21%  Similarity=0.192  Sum_probs=152.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeecc----CcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD----GPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~d----g~V~~v~~lP~P~~~~~~d~F  126 (787)
                      .-+|++.|+.+.|-.       +++.|++...++ |+||++.+..+- |--+.|.    +--..|.|.|+.         
T Consensus        82 LKgH~~~vt~~~FsS-------dGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc---------  144 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSS-------DGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDC---------  144 (420)
T ss_pred             hhccCCceeeeEEcC-------CCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCc---------
Confidence            346888899999953       578888888877 899999763211 1000010    122344455432         


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEE------EEeCCC----
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEH------VLRFRS----  193 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~------tL~f~s----  193 (787)
                        + .++  |.+-                               ..+++++|-+...+   .-+      .+.|+.    
T Consensus       145 --~-s~v--v~~~-------------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v  188 (420)
T KOG2096|consen  145 --K-SVV--VSVK-------------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQV  188 (420)
T ss_pred             --c-eEE--EEEc-------------------------------cCCEEEEEEeeecccCCCCcccccccccccchhccc
Confidence              1 122  1210                               11467777654322   211      222332    


Q ss_pred             cEEEE--EecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC
Q 003907          194 SVCMV--RCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN  268 (787)
Q Consensus       194 ~V~sV--~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~  268 (787)
                      .|.+|  +=+.++|+.+. +..|.|||+. |+++.++.+....             ..-.|++|  |+||.++-.+-+  
T Consensus       189 ~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDV--  252 (420)
T KOG2096|consen  189 DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDV--  252 (420)
T ss_pred             ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCc--
Confidence            34444  44557787754 6679999998 9999999886542             23578898  999988753200  


Q ss_pred             cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (787)
Q Consensus       269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d  348 (787)
                         ..|...                                                                   -..|
T Consensus       253 ---kVwE~~-------------------------------------------------------------------f~kd  262 (420)
T KOG2096|consen  253 ---KVWEPI-------------------------------------------------------------------FTKD  262 (420)
T ss_pred             ---eEEEEE-------------------------------------------------------------------eccC
Confidence               001100                                                                   0123


Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--------C------CCCC---
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--------G------SGNH---  411 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~--------~------~g~~---  411 (787)
                      |+++     .-..+.+|++|.+.|.++|||++.+.++|+|.||+ +||||+.-.+...        +      .|..   
T Consensus       263 G~fq-----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R  336 (420)
T KOG2096|consen  263 GTFQ-----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR  336 (420)
T ss_pred             cchh-----hhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence            3321     12345678999999999999999999999999887 9999975321000        0      0000   


Q ss_pred             -----ccc----cCCcceEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          412 -----KYD----WNSSHVHLYKLHRGI--------TSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       412 -----~~~----~~~s~~~l~~l~rG~--------~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                           +-+    ...+..+++.-++|.        +...|.+|+|++||+++|+++++ -++|+.
T Consensus       337 L~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~  400 (420)
T KOG2096|consen  337 LELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR  400 (420)
T ss_pred             EEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence                 000    001113344333432        23359999999999999999765 567764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.50  E-value=4e-12  Score=130.88  Aligned_cols=229  Identities=14%  Similarity=0.192  Sum_probs=161.5

Q ss_pred             eccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCC
Q 003907           66 RLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA  145 (787)
Q Consensus        66 ~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~  145 (787)
                      |+.+.+.....+.....+..+++||.-. +++...+....+.+. +.+.|..           .  .++++.-       
T Consensus        69 ql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~~~~eni~-i~wsp~g-----------~--~~~~~~k-------  126 (313)
T KOG1407|consen   69 QLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIETKGENIN-ITWSPDG-----------E--YIAVGNK-------  126 (313)
T ss_pred             hheeCCCCCcceEEecCCceEEEEEecc-CcEEEEeeccCcceE-EEEcCCC-----------C--EEEEecC-------
Confidence            3333333333444444445799999954 555555555444444 4566642           2  5554221       


Q ss_pred             CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEEeCCeEEEEECCCCc
Q 003907          146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGLATQIYCFDALTLE  222 (787)
Q Consensus       146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L-aV~~~~~I~iwD~~T~e  222 (787)
                                                +..|.+.|.++.+.+++.+|.-.+..+.++-  +++ +...-+.|.|..-..+|
T Consensus       127 --------------------------dD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  127 --------------------------DDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             --------------------------cccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence                                      2479999999999999999998888888764  333 33333688888888899


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d  300 (787)
                      .+++|..||.-             --.++++|  ||+|.++                                       
T Consensus       181 pv~si~AH~sn-------------CicI~f~p~GryfA~Gs---------------------------------------  208 (313)
T KOG1407|consen  181 PVQSIKAHPSN-------------CICIEFDPDGRYFATGS---------------------------------------  208 (313)
T ss_pred             cccccccCCcc-------------eEEEEECCCCceEeecc---------------------------------------
Confidence            99999888752             12456666  6666654                                       


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (787)
Q Consensus       301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd  380 (787)
                                                                    .|-.|-+||+...-+++.|..|+-||..|+||.|
T Consensus       209 ----------------------------------------------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  209 ----------------------------------------------ADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             ----------------------------------------------ccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence                                                          3446779999999999999999999999999999


Q ss_pred             CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC--------
Q 003907          381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK--------  452 (787)
Q Consensus       381 G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d--------  452 (787)
                      |+|||+||+ ++.|-|=++.+       |          .++++..   +.+.-..++|.|....||-+.+|        
T Consensus       243 g~~lASaSE-Dh~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~re  301 (313)
T KOG1407|consen  243 GRMLASASE-DHFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNRE  301 (313)
T ss_pred             cceeeccCc-cceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccc
Confidence            999999999 77787777654       4          4677764   34567889999999999988766        


Q ss_pred             -CeEEEEeCC
Q 003907          453 -GTCHVFVLS  461 (787)
Q Consensus       453 -gTVhIwdl~  461 (787)
                       |+++||-+.
T Consensus       302 ag~vKiFG~~  311 (313)
T KOG1407|consen  302 AGTVKIFGLS  311 (313)
T ss_pred             cceeEEecCC
Confidence             466666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.50  E-value=1.6e-12  Score=150.67  Aligned_cols=197  Identities=17%  Similarity=0.156  Sum_probs=126.4

Q ss_pred             CCCCCcccCCcCCC-CCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEE-EeCCeEEEEECCCCceeE
Q 003907          151 SHLGGVRDGMMDSQ-SGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKF  225 (787)
Q Consensus       151 ~~~~~~r~g~~~~~-~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e~l~  225 (787)
                      +|.+.|=|-+|... --=....++|||||++...++++++.++.-|.+|+|+|   ++++. ++|.+|+||++..-+...
T Consensus       367 GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~  446 (712)
T KOG0283|consen  367 GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD  446 (712)
T ss_pred             ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe
Confidence            35555556666421 00012467999999999999999999999999999999   56665 678999999987654211


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                         .+...+.           ...+       +|..                           + |.             
T Consensus       447 ---W~Dl~~l-----------ITAv-------cy~P---------------------------d-Gk-------------  464 (712)
T KOG0283|consen  447 ---WNDLRDL-----------ITAV-------CYSP---------------------------D-GK-------------  464 (712)
T ss_pred             ---ehhhhhh-----------heeE-------Eecc---------------------------C-Cc-------------
Confidence               1111100           0011       1211                           1 00             


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--C------CCCeEEEEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--H------TSPISALCF  377 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H------~~pIsaLaF  377 (787)
                                                         ....|..+|.+++|+....+.+..+.-  |      ...|+.+.|
T Consensus       465 -----------------------------------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  465 -----------------------------------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             -----------------------------------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence                                               011245678888888887776655431  1      127999999


Q ss_pred             CCCCC--EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCe
Q 003907          378 DPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGT  454 (787)
Q Consensus       378 SpdG~--lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgT  454 (787)
                      .|...  +|+| |.|- .|||||....                 ..+.+|+ |..+. .-...+|+.||++|+++|+|.-
T Consensus       510 ~p~~~~~vLVT-SnDS-rIRI~d~~~~-----------------~lv~KfK-G~~n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  510 FPGDPDEVLVT-SNDS-RIRIYDGRDK-----------------DLVHKFK-GFRNTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             cCCCCCeEEEe-cCCC-ceEEEeccch-----------------hhhhhhc-ccccCCcceeeeEccCCCEEEEeecCce
Confidence            87433  6665 4534 5999998431                 1333332 33332 2345889999999999999999


Q ss_pred             EEEEeCCCCC
Q 003907          455 CHVFVLSPFG  464 (787)
Q Consensus       455 VhIwdl~~~g  464 (787)
                      |+||++....
T Consensus       570 VYiW~~~~~~  579 (712)
T KOG0283|consen  570 VYIWKNDSFN  579 (712)
T ss_pred             EEEEeCCCCc
Confidence            9999986543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.9e-12  Score=147.40  Aligned_cols=239  Identities=15%  Similarity=0.181  Sum_probs=165.6

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ..|++..+-+.||.    +   +..|.++..+| +++|+.....+.-+++..+...|.+++.-             ..  
T Consensus        10 yaht~G~t~i~~d~----~---gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------------s~--   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP----D---GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------------SN--   67 (933)
T ss_pred             hhccCceEEEEEcC----C---CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------------cc--
Confidence            45777777777874    2   44666666666 99999966435556666666677777643             12  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeCCCcEEEEEecCCeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRFRSSVCMVRCSPRIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~f~s~V~sV~~s~~~LaV~  208 (787)
                      .+++ +.                                ..++|.+|.+-+++.-   ..+.++-.++.+.-+++.+|.|
T Consensus        68 ~f~~-~s--------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag  114 (933)
T KOG1274|consen   68 HFLT-GS--------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG  114 (933)
T ss_pred             ceEE-ee--------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee
Confidence            3333 21                                1368999999887654   3334444444554555788888


Q ss_pred             eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       209 ~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      .++ .|+|-+..+......+.+|..|             .-.+.+.|  .+||.                          
T Consensus       115 sdD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAv--------------------------  155 (933)
T KOG1274|consen  115 SDDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAV--------------------------  155 (933)
T ss_pred             cCceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEE--------------------------
Confidence            766 5999999988888888877665             11233333  22222                          


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                                                                                 .+.||.|+|||+.++.+..++
T Consensus       156 -----------------------------------------------------------ss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  156 -----------------------------------------------------------SSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             -----------------------------------------------------------EecCceEEEEEcccchhhhhc
Confidence                                                                       245889999999988776665


Q ss_pred             cc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 003907          366 KA-------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI  437 (787)
Q Consensus       366 ~a-------H-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sl  437 (787)
                      .+       - ...+..++|+|+|..||....|+ .|++|+...                 ..++++|+.......+.++
T Consensus       177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~-----------------we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG-----------------WELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             ccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC-----------------ceeheeecccccccceEEE
Confidence            43       1 44677899999966666666745 499999742                 1577888755544569999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +|||.|+|||+++.||-|-|||+++
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.9e-12  Score=132.74  Aligned_cols=249  Identities=13%  Similarity=0.108  Sum_probs=164.4

Q ss_pred             CCCCCCcEEEEEEeecc------CCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLE------YGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG  125 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~------~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~  125 (787)
                      ..+.+.-.....||.-+      ..++...++++...++.+|+||+....+-...+..|...|..+-+.+.         
T Consensus        45 ~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~---------  115 (311)
T KOG0277|consen   45 VTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV---------  115 (311)
T ss_pred             cCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc---------
Confidence            33566666777777411      122223445555545559999987666656667778888888877642         


Q ss_pred             ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--
Q 003907          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--  202 (787)
Q Consensus       126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--  202 (787)
                         .|..+++ +                      +||          ++|+|||...++-++|++.+ +.|+...++|  
T Consensus       116 ---~r~~~lt-s----------------------SWD----------~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen  116 ---RRRIFLT-S----------------------SWD----------GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             ---cceeEEe-e----------------------ccC----------CceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence               1222222 2                      343          69999999999999998765 5899999998  


Q ss_pred             -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       ++++.+ .+...++||++..-....|..|...                 +++..                         
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cd-------------------------  197 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCD-------------------------  197 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeec-------------------------
Confidence             677764 4667999997643322334333210                 01000                         


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-  359 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-  359 (787)
                                                      +++|                     +...+++++.|+.|++||+++. 
T Consensus       198 --------------------------------w~ky---------------------~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  198 --------------------------------WSKY---------------------NHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             --------------------------------cccc---------------------CCcEEEecCCCceEEEEehhhcc
Confidence                                            1111                     1112345678999999999985 


Q ss_pred             cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          360 AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                      .++..|.+|.-.|..++|||. ..+|||||-| -++||||.+..-     +         ....++.    |..-+..+.
T Consensus       225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-mT~riw~~~~~d-----s---------~~e~~~~----HtEFv~g~D  285 (311)
T KOG0277|consen  225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-MTVRIWDPERQD-----S---------AIETVDH----HTEFVCGLD  285 (311)
T ss_pred             ccceeecCCceEEEEEecCcchhhHhhhcccc-ceEEecccccch-----h---------hhhhhhc----cceEEeccc
Confidence            478889999999999999995 6689999994 559999985310     0         0111221    222367788


Q ss_pred             Ecc-CCCEEEEEeCCCeEEEEe
Q 003907          439 FSH-YSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       439 FSp-Dg~~LAs~S~dgTVhIwd  459 (787)
                      ||+ +..++|+++=|+++.||+
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cccccCceeeecccccceeeec
Confidence            886 678999999999999997

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.7e-12  Score=144.09  Aligned_cols=238  Identities=16%  Similarity=0.167  Sum_probs=179.1

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ..++|++|....+-+|+-. .+.+.++.+.+...|..+.+.|+           +.  .||+-.                
T Consensus       187 s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~-----------G~--~LavG~----------------  236 (484)
T KOG0305|consen  187 SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPD-----------GS--HLAVGT----------------  236 (484)
T ss_pred             cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCC-----------CC--EEEEee----------------
Confidence            3679999999999999985 57788888887889999999864           22  677622                


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEE-EEe
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFS-VLT  229 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~t-l~t  229 (787)
                                       ..++|.|||.++.+.+.++..  ...|-+++++...|..|. +..|..+|++..+.... +..
T Consensus       237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~  299 (484)
T KOG0305|consen  237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG  299 (484)
T ss_pred             -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence                             126899999999999999987  468999999998888876 45799999887764333 222


Q ss_pred             cCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccc
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~  309 (787)
                      |..-               .+.+     +...                                                
T Consensus       300 H~qe---------------VCgL-----kws~------------------------------------------------  311 (484)
T KOG0305|consen  300 HRQE---------------VCGL-----KWSP------------------------------------------------  311 (484)
T ss_pred             ccce---------------eeee-----EECC------------------------------------------------
Confidence            2210               1111     1111                                                


Q ss_pred             ceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE
Q 003907          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS  388 (787)
Q Consensus       310 ~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS  388 (787)
                                                  .+..++++..|..+.|||.....++..+..|+..|.+|+|+| ...+||||+
T Consensus       312 ----------------------------d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  312 ----------------------------DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             ----------------------------CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence                                        111234567889999999988899999999999999999999 677999974


Q ss_pred             -cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCC
Q 003907          389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGG  465 (787)
Q Consensus       389 -~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg  465 (787)
                       ..|..|++||+..       |          .++....   +...|.+|.||+..+-|+++-  .++-|.||+......
T Consensus       364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence             3356799999854       3          3454443   345799999999997777664  456799999999888


Q ss_pred             ccccccccC
Q 003907          466 DSGFQTLSS  474 (787)
Q Consensus       466 ~~~~~~H~~  474 (787)
                      ...+.+|+.
T Consensus       424 ~~~l~gH~~  432 (484)
T KOG0305|consen  424 VAELLGHTS  432 (484)
T ss_pred             eeeecCCcc
Confidence            888888964

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.5e-11  Score=127.45  Aligned_cols=108  Identities=14%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             CceEEEEECCCC----cEEEEeccCCCCeEEEEECCC-C---CEEEEEEcCCCEEEEEeCCCCcc-----cCCCCCCccc
Q 003907          348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS-G---TLLVTASVYGNNINIFRIMPSCM-----RSGSGNHKYD  414 (787)
Q Consensus       348 dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSpd-G---~lLATaS~dG~~IrVWdi~~~~~-----~~~~g~~~~~  414 (787)
                      -+.++||....+    ..++++..|+.||..|+|.|+ |   .+||+|+.||  |+||.+...+.     ....+.  ..
T Consensus       198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~--~~  273 (361)
T KOG2445|consen  198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPD--LM  273 (361)
T ss_pred             ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCC--Cc
Confidence            456788876543    256788899999999999996 3   3799999977  99999974210     000000  00


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+-..+.+.++  +.|++.|+.+.|.-.|..|+++++||+|++|..+
T Consensus       274 ~~l~v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  274 TDLPVEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             cccceEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            01111223233  3467789999999999999999999999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.47  E-value=1.8e-12  Score=143.10  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             cccCCCceEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          343 ADMDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~---v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      +.+..||.|++||..+...   ...=.||..  .|+||+||+||++|+|-+.|++ ++|||++..               
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~---------------  396 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF---------------  396 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc---------------
Confidence            3456799999999865432   222358987  9999999999999999999776 999999542               


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEeCCCCCCccc
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~------dgTVhIwdl~~~gg~~~  468 (787)
                       ..+|.....-.+...-++++||||.+.|++|+.      .|++.+||-.++.....
T Consensus       397 -kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k  452 (641)
T KOG0772|consen  397 -KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK  452 (641)
T ss_pred             -ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence             134443322112224578999999999999864      36788888777655433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=5e-11  Score=120.42  Aligned_cols=257  Identities=14%  Similarity=0.122  Sum_probs=171.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC--CCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED--ASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~--~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F  126 (787)
                      +--||..|+.+.|..       .+++|++|..+. +++.-.+.  ...  -.--++-|||.|+.+.|+-+|..       
T Consensus        85 ~khhkgsiyc~~ws~-------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s-------  150 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSP-------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES-------  150 (350)
T ss_pred             ccccCccEEEEEecC-------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc-------
Confidence            444778888888864       477999999874 77765532  111  11236789999999999977642       


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEE-EecCCe
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMV-RCSPRI  204 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV-~~s~~~  204 (787)
                        ..-+|+.  ++    .                          -+++|.+=|-.+|+..+.+..+ +.|+++ .+|.-+
T Consensus       151 --~~~il~s--~g----a--------------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m  196 (350)
T KOG0641|consen  151 --GGAILAS--AG----A--------------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM  196 (350)
T ss_pred             --CceEEEe--cC----C--------------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence              2225543  21    0                          1368888899999999999866 578776 567778


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      ++.+. +.+|++||++-..+..++.+.-.      +   .  |...-|                                
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~------~---~--glessa--------------------------------  233 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFH------D---G--GLESSA--------------------------------  233 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCccc------C---C--Ccccce--------------------------------
Confidence            88765 55799999875555444432100      0   0  000001                                


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                                |+.++.|                                |.++    .++++..|....+||++.++.+.
T Consensus       234 ----------vaav~vd--------------------------------psgr----ll~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  234 ----------VAAVAVD--------------------------------PSGR----LLASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             ----------eEEEEEC--------------------------------CCcc----eeeeccCCCceEEEEeeCCceee
Confidence                      1111111                                0011    11244567788999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .|..|+..|.|+.|||...+|+|+|- +..|++=|+.        |.    +.   +.+-..--+.+...+..+.|.|..
T Consensus       268 ~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlq--------gd----la---~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQ--------GD----LA---HELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             eeCCCccceeEEEeCCCceEEEEecc-cceEEEeecc--------cc----hh---hcCceEEEEeccCceEEEEecCcc
Confidence            99999999999999999999999999 4569999984        21    00   112112223344556669999999


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q 003907          444 QWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~  461 (787)
                      --+.++|.|.|+.+|.++
T Consensus       332 ~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 FSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeeeccCcceEEEeccC
Confidence            888999999999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.44  E-value=3.8e-13  Score=145.04  Aligned_cols=212  Identities=14%  Similarity=0.214  Sum_probs=145.9

Q ss_pred             CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 003907          191 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL  265 (787)
Q Consensus       191 f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~  265 (787)
                      -..+|..|++.|  |+|++|. .+.+.+|+..+.--...+..|..|             +..|.+++  .|+.+++....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGM  161 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCce
Confidence            456899999988  6777765 467999998655333333355554             34577766  78877765432


Q ss_pred             ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccccc
Q 003907          266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM  345 (787)
Q Consensus       266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~  345 (787)
                      +     .-||.--..           +.+...+.+       ..                ...+++++    +..-+.++
T Consensus       162 i-----KyWqpnmnn-----------Vk~~~ahh~-------ea----------------IRdlafSp----nDskF~t~  198 (464)
T KOG0284|consen  162 I-----KYWQPNMNN-----------VKIIQAHHA-------EA----------------IRDLAFSP----NDSKFLTC  198 (464)
T ss_pred             E-----Eecccchhh-----------hHHhhHhhh-------hh----------------hheeccCC----CCceeEEe
Confidence            1     123321100           000000000       00                00111111    11124567


Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      +.||+|+|||+...+.-..|.+|.-.|.+++|+|.-.++|++|. ++.|++||.+.       |          .++..+
T Consensus       199 SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk-DnlVKlWDprS-------g----------~cl~tl  260 (464)
T KOG0284|consen  199 SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK-DNLVKLWDPRS-------G----------SCLATL  260 (464)
T ss_pred             cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC-CceeEeecCCC-------c----------chhhhh
Confidence            88999999999999888899999999999999999999999999 45899999864       3          466666


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      . + +...|..+.|+++++||+++|.|.++++||+...+....+++|...+..
T Consensus       261 h-~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  261 H-G-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS  311 (464)
T ss_pred             h-h-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence            5 2 3346999999999999999999999999999988888888999754433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.43  E-value=6.8e-12  Score=128.42  Aligned_cols=283  Identities=13%  Similarity=0.105  Sum_probs=180.2

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      .+|+-.|.-..|--+  .+  ++-.|+.+..+|--+..--++|...-++.+|.|.|....+..+-              +
T Consensus        11 ~ghtrpvvdl~~s~i--tp--~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--------------~   72 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPI--TP--DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--------------T   72 (334)
T ss_pred             cCCCcceeEEeccCC--CC--CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--------------h
Confidence            456677777777642  22  47789999998854444445677888999999999987765321              2


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE-e
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L  209 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~-~  209 (787)
                      .|. ++                               ..+-+-++||.-+|..++++++..-|.+++|+.  +.|+++ .
T Consensus        73 ~aa-sa-------------------------------aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~  120 (334)
T KOG0278|consen   73 RAA-SA-------------------------------AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQ  120 (334)
T ss_pred             hhh-hh-------------------------------cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccch
Confidence            221 10                               023477899999999999999999999999987  455554 4


Q ss_pred             CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          210 ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       210 ~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +.-+++||+...+ ....+.+|+..         +.   ..+-+..  ..|..+.+.      ++..|+..++..+    
T Consensus       121 ekllrvfdln~p~App~E~~ghtg~---------Ir---~v~wc~eD~~iLSSadd~------tVRLWD~rTgt~v----  178 (334)
T KOG0278|consen  121 EKLLRVFDLNRPKAPPKEISGHTGG---------IR---TVLWCHEDKCILSSADDK------TVRLWDHRTGTEV----  178 (334)
T ss_pred             HHHhhhhhccCCCCCchhhcCCCCc---------ce---eEEEeccCceEEeeccCC------ceEEEEeccCcEE----
Confidence            4558899877554 12233333321         11   1222221  445555543      2233665553111    


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                              ++|.       -.....++-.+++++.     .+....+.|..||..+..++..++
T Consensus       179 ------------------------~sL~-------~~s~VtSlEvs~dG~i-----lTia~gssV~Fwdaksf~~lKs~k  222 (334)
T KOG0278|consen  179 ------------------------QSLE-------FNSPVTSLEVSQDGRI-----LTIAYGSSVKFWDAKSFGLLKSYK  222 (334)
T ss_pred             ------------------------EEEe-------cCCCCcceeeccCCCE-----EEEecCceeEEeccccccceeecc
Confidence                                    0000       0000111111222222     123456789999999988888776


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      .- ..|.+.+++|+-..++.+++|+. +..||..+       |          ..+-.+..|+ ...|-|+.|||||..-
T Consensus       223 ~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh-~gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  223 MP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGH-FGPVHCVRFSPDGELY  282 (334)
T ss_pred             Cc-cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCC-CCceEEEEECCCCcee
Confidence            54 46888999999999999998665 78899754       3          2332233453 4679999999999999


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 003907          447 AIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       447 As~S~dgTVhIwdl~~~  463 (787)
                      |+||.||||+||...+.
T Consensus       283 AsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             eccCCCceEEEEEecCC
Confidence            99999999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.42  E-value=1.7e-12  Score=148.91  Aligned_cols=113  Identities=16%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             ccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ++...|.+++||++. .++..+|.||.+||.|+.|+|++.+||||+.|+ .|+|||....               ....+
T Consensus       194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~---------------~~~~~  257 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDS---------------RAKPK  257 (839)
T ss_pred             EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCC---------------Cccce
Confidence            445679999999986 456778999999999999999999999999855 5999998431               01233


Q ss_pred             EEEecccccccEEEEEEccCCCE-EEEEe--CCCeEEEEeCCCCCCc-cccccccCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQW-IAIVS--SKGTCHVFVLSPFGGD-SGFQTLSSQ  475 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~-LAs~S--~dgTVhIwdl~~~gg~-~~~~~H~~~  475 (787)
                      ....   +.+.|..+.|-|+-++ ||+++  .|-.|||||+...--+ ..+..|+..
T Consensus       258 ~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~  311 (839)
T KOG0269|consen  258 HTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS  311 (839)
T ss_pred             eEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence            4443   4578999999998764 66665  3678999999744333 456677643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=5.2e-12  Score=129.05  Aligned_cols=263  Identities=15%  Similarity=0.199  Sum_probs=169.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC--ceeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~--~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      +..|+|.|.-+-.|.       -++.|+++..++ ++||.+.+.+  ++...|.+|.|||.-+.+. .|.        .+
T Consensus         7 dt~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk--------~G   70 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK--------FG   70 (299)
T ss_pred             hhhhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc--------cC
Confidence            345777777666653       256677777766 9999998877  4666788999999999987 332        23


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecCC--
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR--  203 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~~--  203 (787)
                      .  +||.++                                 .+++|.||.-.+|+--+..+   +.+.|.+|++-|.  
T Consensus        71 ~--iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey  115 (299)
T KOG1332|consen   71 T--ILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY  115 (299)
T ss_pred             c--EeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeeccccccc
Confidence            3  787643                                 34799999998885433333   3468999999882  


Q ss_pred             --eEEEE-eCCeEEEEECCCC-cee-EEE-EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907          204 --IVAVG-LATQIYCFDALTL-ENK-FSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (787)
Q Consensus       204 --~LaV~-~~~~I~iwD~~T~-e~l-~tl-~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l  277 (787)
                        +||++ .|+.|.+++..+- .-. ..| ..|+.             |.+.+...|     +.-+              
T Consensus       116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVswap-----a~~~--------------  163 (299)
T KOG1332|consen  116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSWAP-----ASAP--------------  163 (299)
T ss_pred             ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeeecC-----cCCC--------------
Confidence              56664 4678988876543 110 011 11221             233344322     1000              


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~  357 (787)
                                   |.++.+.       .++.+                              .-++++..|..|+||+..
T Consensus       164 -------------g~~~~~~-------~~~~~------------------------------krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  164 -------------GSLVDQG-------PAAKV------------------------------KRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             -------------ccccccC-------ccccc------------------------------ceeeccCCccceeeeecC
Confidence                         1111000       00000                              012456789999999998


Q ss_pred             CCc--EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907          358 TRA--IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (787)
Q Consensus       358 s~~--~v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~  431 (787)
                      +++  .-.+|.+|++-|..+|+.|.-    ..||+||.||+ +.||.....      +   ..|..  ..+.+|     .
T Consensus       194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e------~---e~wk~--tll~~f-----~  256 (299)
T KOG1332|consen  194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE------Y---EPWKK--TLLEEF-----P  256 (299)
T ss_pred             CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc------c---Ccccc--cccccC-----C
Confidence            864  334589999999999999964    47999999887 789986421      0   11211  122222     3


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ..++.++||..|+.||++..|+.|.+|.-+..|
T Consensus       257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  257 DVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             cceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence            469999999999999999999999999866543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4.2e-13  Score=152.72  Aligned_cols=213  Identities=14%  Similarity=0.235  Sum_probs=155.2

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      .++++.|..+- +-+|.+..... .--+-.|++||.+|.+.+.             .-||+.  |     +         
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl~f~~~-------------E~Llaa--g-----s---------   89 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESLTFDTS-------------ERLLAA--G-----S---------   89 (825)
T ss_pred             ceeeccCCCceeeccccccCCch-hheeeccCCcceeeecCcc-------------hhhhcc--c-----c---------
Confidence            46777777665 56898855332 2235689999999997732             125432  2     0         


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEe
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t  229 (787)
                                       ..++|+|||+..++.+++|.++ ..+..|.|+|  .+.|.+ .+..+.+||++..-+.++..+
T Consensus        90 -----------------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   90 -----------------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             -----------------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence                             1369999999999999999865 6899999999  455554 456799999987777777766


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~  307 (787)
                      |+-             +...++|+|  ||+|.+                                               
T Consensus       153 ~~~-------------vv~~l~lsP~Gr~v~~g-----------------------------------------------  172 (825)
T KOG0267|consen  153 HTR-------------VVDVLRLSPDGRWVASG-----------------------------------------------  172 (825)
T ss_pred             Ccc-------------eeEEEeecCCCceeecc-----------------------------------------------
Confidence            443             134455555  444433                                               


Q ss_pred             ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003907          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (787)
Q Consensus       308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATa  387 (787)
                                                            ..|.+++|||+..++.+..|+.|+..|.++.|+|..-+|+++
T Consensus       173 --------------------------------------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  173 --------------------------------------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             --------------------------------------CCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence                                                  336789999999999999999999999999999999999999


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       388 S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      |.|. ++++||+++.                 ..+-.  .+.....|.+++|+|||+.+++|-..
T Consensus       215 s~d~-tv~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  215 SSDR-TVRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCc-eeeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence            9966 4999998642                 11111  11223469999999999988877544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.40  E-value=9.6e-13  Score=144.51  Aligned_cols=218  Identities=14%  Similarity=0.115  Sum_probs=159.9

Q ss_pred             ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (787)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (787)
                      ....++++|...|.++++.|.            +..||+.  ++                               .+++|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~g-------------------------------mD~~v  239 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPK------------KGHLLLS--GG-------------------------------MDGLV  239 (503)
T ss_pred             hheeeccCCccccchhhhccc------------eeeEEEe--cC-------------------------------CCceE
Confidence            345567788889999999873            2235543  21                               24799


Q ss_pred             EEEECCC-CeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          176 RFYSFQS-HCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       176 rlWdlkt-g~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      +||++.. +.+++++..++ +|.+++||.   ++|.++++..|++||+.||+++.++.+.-.|              ..+
T Consensus       240 klW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv  305 (503)
T KOG0282|consen  240 KLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV  305 (503)
T ss_pred             EEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence            9999987 89999998775 899999987   6888999999999999999988887653222              111


Q ss_pred             EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (787)
Q Consensus       251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s  330 (787)
                      -+.|                                  ++-                                       
T Consensus       306 kf~p----------------------------------d~~---------------------------------------  312 (503)
T KOG0282|consen  306 KFHP----------------------------------DNQ---------------------------------------  312 (503)
T ss_pred             ecCC----------------------------------CCC---------------------------------------
Confidence            1110                                  000                                       


Q ss_pred             cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                               ..+..+..|+.|+.||+++++++.....|-++|..+.|=++|+.++|+|+|+ .++||+....       .
T Consensus       313 ---------n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-s~riWe~~~~-------v  375 (503)
T KOG0282|consen  313 ---------NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-SVRIWENRIP-------V  375 (503)
T ss_pred             ---------cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-cEEEEEcCCC-------c
Confidence                     0112356789999999999999999999999999999999999999999966 5999998531       0


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC---cccccccc
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG---DSGFQTLS  473 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg---~~~~~~H~  473 (787)
                               ...+...-.++  ...+|+.+|.++|+++=|.|.-|-||.+.+.-.   ...+.+|.
T Consensus       376 ---------~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  376 ---------PIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ---------cchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence                     11122222222  367899999999999999999999999764322   23455663

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.40  E-value=4.7e-11  Score=124.67  Aligned_cols=132  Identities=14%  Similarity=0.198  Sum_probs=98.5

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC-----CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      +.+|++||..|-+....+++++.||+=+++|     -++|+|..+ +|+++|+..|..-|+|.+|-..            
T Consensus       123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~------------  190 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG------------  190 (397)
T ss_pred             cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc------------
Confidence            4799999999999999999999999888877     467777765 7999999999999999887541            


Q ss_pred             ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                       .-.+.++|  .|+-                                                                 
T Consensus       191 -vlaV~Wsp~~e~vL-----------------------------------------------------------------  204 (397)
T KOG4283|consen  191 -VLAVEWSPSSEWVL-----------------------------------------------------------------  204 (397)
T ss_pred             -eEEEEeccCceeEE-----------------------------------------------------------------
Confidence             12233444  2221                                                                 


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------------~---~v~~~~aH~~pIsaLaFSpdG~lLATaS  388 (787)
                                         ++++.||.|++||++.-            +   .+.+=.+|.+.|+.+||+.+|.+|++++
T Consensus       205 -------------------atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  205 -------------------ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             -------------------EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence                               23345666666666431            1   1222347889999999999999999999


Q ss_pred             cCCCEEEEEeCCC
Q 003907          389 VYGNNINIFRIMP  401 (787)
Q Consensus       389 ~dG~~IrVWdi~~  401 (787)
                      .|++ +++|+...
T Consensus       266 td~r-~r~wn~~~  277 (397)
T KOG4283|consen  266 TDDR-IRVWNMES  277 (397)
T ss_pred             Cccc-eEEeeccc
Confidence            9776 99999754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.39  E-value=7.8e-12  Score=131.05  Aligned_cols=99  Identities=17%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             ceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          349 GIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      -++++||+.+-++...-   ..|++.|+++.+|+.|++.+|||.||. |+|||=-.                 .+++..+
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS-----------------~rCv~t~  299 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS-----------------NRCVRTI  299 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc-----------------HHHHHHH
Confidence            36788888877654332   369999999999999999999999887 99999421                 2566666


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      .+.+..+.|.+..|+.+|+||.+++.|.+|++|.|.+...
T Consensus       300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            6666667899999999999999999999999999987543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.39  E-value=1.2e-11  Score=140.34  Aligned_cols=218  Identities=17%  Similarity=0.235  Sum_probs=144.3

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC-----CeEEEEeCC-eEEEEECC-CCceeEEEEecCCcccCCCCccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-----RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN  244 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~  244 (787)
                      +++|||||..-++.+.++-+ +.|+.+.++.     ++||.+..+ -||+||+. ...+++++.+|...           
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss-----------  549 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS-----------  549 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence            68999999998888888755 6999999875     688887755 49999974 56677788776652           


Q ss_pred             cccce--eEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907          245 VGYGP--MAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (787)
Q Consensus       245 ~~~~~--lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~  319 (787)
                        ...  +|.+-   +.|..+.+..+....-+.               .+.|.+.-|           +. +++++..  
T Consensus       550 --ITsvKFa~~gln~~MiscGADksimFr~~qk---------------~~~g~~f~r-----------~t-~t~~ktT--  598 (1080)
T KOG1408|consen  550 --ITSVKFACNGLNRKMISCGADKSIMFRVNQK---------------ASSGRLFPR-----------HT-QTLSKTT--  598 (1080)
T ss_pred             --eeEEEEeecCCceEEEeccCchhhheehhcc---------------ccCceeccc-----------cc-cccccce--
Confidence              112  12111   333333332211110000               000110000           00 1111110  


Q ss_pred             cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H~~pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                            -..+...+.|+.    .+.+.+|..|+|||+.+++....|++   |++..-.+..+|+|.||||... ++++.+
T Consensus       599 ------lYDm~Vdp~~k~----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~  667 (1080)
T KOG1408|consen  599 ------LYDMAVDPTSKL----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCF  667 (1080)
T ss_pred             ------EEEeeeCCCcce----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEE
Confidence                  111223333443    34678999999999999999999985   7778889999999999999888 556999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ||.-.       |          +++.... |+ ...|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus       668 ~Df~s-------g----------EcvA~m~-GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  668 VDFVS-------G----------ECVAQMT-GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEecc-------c----------hhhhhhc-Cc-chheeeeeecccchhheeecCCceEEEEECch
Confidence            99843       3          4555543 43 34599999999999999999999999999864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=1.8e-11  Score=142.05  Aligned_cols=107  Identities=17%  Similarity=0.287  Sum_probs=87.0

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      +.+++-|.+|++|++....++..| .|..-|+|++|+| |.+|+++||.||+ ||||+|...               ...
T Consensus       383 LLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv  445 (712)
T KOG0283|consen  383 LLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVV  445 (712)
T ss_pred             eEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeE
Confidence            346778999999999999999998 5899999999999 8999999999886 999999531               012


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~  470 (787)
                      ..++++     ..|++++|+|||++.++|+.+|.+++|+.....-...++
T Consensus       446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            223332     459999999999999999999999999987654444433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.38  E-value=3e-10  Score=125.50  Aligned_cols=263  Identities=17%  Similarity=0.168  Sum_probs=161.5

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      +|..|+.+.|..  .     +. +++|..+| +-||+.....-.+.+. .|+|.|.++-|+-+             ..||
T Consensus       245 ekk~Vl~v~F~e--n-----gd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~-------------Gtll  302 (626)
T KOG2106|consen  245 EKKFVLCVTFLE--N-----GD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD-------------GTLL  302 (626)
T ss_pred             cceEEEEEEEcC--C-----CC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC-------------ccEe
Confidence            557788888853  2     33 56677777 7999985443334444 99999999999943             2233


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecCCeEEEEeC
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAVGLA  210 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~~~LaV~~~  210 (787)
                         +|+                               .+++|..|| ..-+.+..++.+   ++|+.|.-++.-|.||..
T Consensus       303 ---SGg-------------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt  347 (626)
T KOG2106|consen  303 ---SGG-------------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT  347 (626)
T ss_pred             ---ecC-------------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence               232                               258999999 444555566655   588999887744666654


Q ss_pred             Ce-EEEEECCCCceeEEEE--ecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCcceeccccCCC-CCc
Q 003907          211 TQ-IYCFDALTLENKFSVL--TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTP-SGV  282 (787)
Q Consensus       211 ~~-I~iwD~~T~e~l~tl~--t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~g~~s~q~lt~-~~~  282 (787)
                      .. |--=.+.+   -+++.  +|..             ..--+|..|  ..++.++.+.  .+|+.-+..|..... ++.
T Consensus       348 rN~iL~Gt~~~---~f~~~v~gh~d-------------elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~  411 (626)
T KOG2106|consen  348 RNFILQGTLEN---GFTLTVQGHGD-------------ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAE  411 (626)
T ss_pred             cceEEEeeecC---CceEEEEeccc-------------ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCcee
Confidence            43 32222332   22322  2221             012345544  3445554432  233322222222221 111


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                      ...+.|.|                                                  .++.+...|...|.|.++...+
T Consensus       412 ~~~fhpsg--------------------------------------------------~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  412 CADFHPSG--------------------------------------------------VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             EeeccCcc--------------------------------------------------eEEEeeccceEEEEecccceeE
Confidence            12222221                                                  2334556788899999985544


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      . ++.-..+|++++|+|+|.+||.||.|+. |-||.+...      |          ....+..+ .+.+.|+.+.||+|
T Consensus       442 ~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~r~~k-~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  442 T-IHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYSRVGK-CSGSPITHLDWSSD  502 (626)
T ss_pred             E-EEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEEEeee-ecCceeEEeeecCC
Confidence            4 4433889999999999999999999665 999998542      3          22222221 22268999999999


Q ss_pred             CCEEEEEeCCCeEEEEe
Q 003907          443 SQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwd  459 (787)
                      +++|.+-|.|-.+-.|+
T Consensus       503 s~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CceEEeccCceEEEEEc
Confidence            99999999999999993

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.38  E-value=4.8e-11  Score=125.97  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      ..+-||.-..++++..+-+|.+.|+.|+|.++|+.|.+++.++..|-.||++..      +          ..+|.|.|.
T Consensus       230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh  293 (406)
T KOG2919|consen  230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH  293 (406)
T ss_pred             ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence            344566666778888899999999999999999999999998888999999642      2          577888664


Q ss_pred             c--ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907          429 I--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       429 ~--~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~  468 (787)
                      .  ++..|+ ....|+|++||+|+.||.|++||++.++.++.
T Consensus       294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            3  333454 45569999999999999999999999888553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=6.6e-11  Score=124.34  Aligned_cols=275  Identities=15%  Similarity=0.168  Sum_probs=174.0

Q ss_pred             cccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCC
Q 003907           42 ASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD  120 (787)
Q Consensus        42 ~s~~~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~  120 (787)
                      .+|+..+....++|||.|--+.-+.       .+.++..++.+ .-+||.++ .+.|.-.+.+|-|.|.+++|.|     
T Consensus       134 ~t~~~~lvre~~GHkDGiW~Vaa~~-------tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~-----  200 (481)
T KOG0300|consen  134 GTVKFRLVRELEGHKDGIWHVAADS-------TQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHN-----  200 (481)
T ss_pred             CceeEeehhhhcccccceeeehhhc-------CCcceeecccccceeEEeec-cccceeeecccccceeeEEecc-----
Confidence            3466777777999999987666553       23466666665 58999996 5888889999999999999875     


Q ss_pred             CCCCCccccCcEEEEEEcCCCCCC--------CC--CCCcCCCCC--cccCCcCCCCCC----CCCCCCEEEEEECCCCe
Q 003907          121 DGCEGFRKLHPFLLVVAGEDTNTL--------AP--GQNRSHLGG--VRDGMMDSQSGN----CVNSPTAVRFYSFQSHC  184 (787)
Q Consensus       121 ~~~d~F~~srpLLavV~~d~~~~~--------~~--~~~~~~~~~--~r~g~~~~~~~~----~~~~p~tVrlWdlktg~  184 (787)
                              ++.|++..+||++..-        -|  ....++.+.  +.+.  |.+..+    ......+||       .
T Consensus       201 --------s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s--De~~~d~d~~~~sD~~tiR-------v  263 (481)
T KOG0300|consen  201 --------SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS--DEHNRDTDSSEKSDGHTIR-------V  263 (481)
T ss_pred             --------ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc--cccccccccccccCCceee-------e
Confidence                    3447766666553210        00  000011100  0000  000000    000011232       2


Q ss_pred             EEEEEeCC-CcEEEEEec--CC-eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEe
Q 003907          185 YEHVLRFR-SSVCMVRCS--PR-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA  260 (787)
Q Consensus       185 ~v~tL~f~-s~V~sV~~s--~~-~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAya  260 (787)
                      .+..|..+ +.|.+..+-  .+ ++..+-+.+..+||+.|++.++.|.+|...             +.-+.-.|      
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-------------LtHcstHp------  324 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-------------LTHCSTHP------  324 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-------------ccccccCC------
Confidence            34455443 456555552  24 444455778999999999988888776542             01111111      


Q ss_pred             cCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccc
Q 003907          261 SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH  340 (787)
Q Consensus       261 s~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~  340 (787)
                                                  . ..||                                              
T Consensus       325 ----------------------------t-QrLV----------------------------------------------  329 (481)
T KOG0300|consen  325 ----------------------------T-QRLV----------------------------------------------  329 (481)
T ss_pred             ----------------------------c-ceEE----------------------------------------------
Confidence                                        0 0111                                              


Q ss_pred             cccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          341 AGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                        .+.+.|-+.++||++.. ..+..|++|+..|+++.|..+. .++++|+ +.+|+|||++..      .          
T Consensus       330 --vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R----------  389 (481)
T KOG0300|consen  330 --VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R----------  389 (481)
T ss_pred             --EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c----------
Confidence              12345778999999843 4678899999999999999765 5678887 667999999642      1          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ..+.+++.   ...+..++.|.-+..||.--++.-|+|||++-.
T Consensus       390 splATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  390 SPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             Ccceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            25666653   346888999998899999999999999999853

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.37  E-value=1.7e-11  Score=134.87  Aligned_cols=118  Identities=21%  Similarity=0.307  Sum_probs=89.5

Q ss_pred             ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~-~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      .++.+|.|.+||+....++..+ ++|..|...|||+|. ..+|||.+. ++.|.+||+...                 ..
T Consensus       182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~-----------------~s  243 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIRSQ-----------------AS  243 (673)
T ss_pred             eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecccc-----------------cc
Confidence            5678999999999988877765 589999999999995 557888888 556999998531                 11


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc-cccccCCCCCCccc
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLF  482 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~-~~~H~~~~~~~~~~  482 (787)
                      ...+.   -.+....++|+++|.+|++|+.+|.|..||+...+.++. +..|...|..-.+.
T Consensus       244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence            11111   123578999999999999999999999999998777765 45676554433333

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.7e-10  Score=121.71  Aligned_cols=183  Identities=13%  Similarity=0.155  Sum_probs=115.7

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .|-+|+..++.+++.++.|.+|...|++|+.+|-+..++++|.|+ +||+||++..      .         ...+..+.
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~------~---------cqg~l~~~  141 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVK------K---------CQGLLNLS  141 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC-eEEeeEecCC------C---------CceEEecC
Confidence            367899999999999999999999999999999999999999955 5999999732      0         01222221


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCCCCCcccCCCCCCccccCCCCCcCCcCCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPP  505 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~~~p  505 (787)
                       + .    ..+||.|+|-++|++...+.|+|||+..+++.+ ...          ..+....+.|..-++|++...+   
T Consensus       142 -~-~----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf----------~i~~~~~~ew~~l~FS~dGK~i---  202 (311)
T KOG1446|consen  142 -G-R----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF----------SITDNDEAEWTDLEFSPDGKSI---  202 (311)
T ss_pred             -C-C----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE----------ccCCCCccceeeeEEcCCCCEE---
Confidence             1 1    348999999999999999999999999885432 110          0011223344444555444332   


Q ss_pred             Cceeecceee-EEecCCCccccccccccccCCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEec
Q 003907          506 PPVTLSVVSR-IKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHEL  584 (787)
Q Consensus       506 ~~~~l~~v~~-i~~~~~~w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~LlV~s~~G~l~~y~l  584 (787)
                         .|+--.. |..- ....|++-...+--.+...+|   +.++|..+              -..+|..+-||.+.+|++
T Consensus       203 ---LlsT~~s~~~~l-DAf~G~~~~tfs~~~~~~~~~---~~a~ftPd--------------s~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  203 ---LLSTNASFIYLL-DAFDGTVKSTFSGYPNAGNLP---LSATFTPD--------------SKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             ---EEEeCCCcEEEE-EccCCcEeeeEeeccCCCCcc---eeEEECCC--------------CcEEEEecCCCcEEEEEc
Confidence               1111000 0100 112333322222223333344   45556543              446888888899999999


Q ss_pred             c
Q 003907          585 L  585 (787)
Q Consensus       585 ~  585 (787)
                      +
T Consensus       262 ~  262 (311)
T KOG1446|consen  262 E  262 (311)
T ss_pred             C
Confidence            3

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.36  E-value=2.2e-10  Score=120.54  Aligned_cols=175  Identities=14%  Similarity=0.115  Sum_probs=120.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L-aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|++||+.+++.+..+.....+..+.+++  +.| +++. ++.|++||+.+++.+..+..+..+               
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------   75 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP---------------   75 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc---------------
Confidence            689999999999999998777777888877  455 3443 468999999998766554332111               


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                            ..+++..+.                           ..++                                  
T Consensus        76 ------~~~~~~~~g---------------------------~~l~----------------------------------   88 (300)
T TIGR03866        76 ------ELFALHPNG---------------------------KILY----------------------------------   88 (300)
T ss_pred             ------cEEEECCCC---------------------------CEEE----------------------------------
Confidence                  112222110                           0000                                  


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                    .....++.+++||+.+.+.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||...       
T Consensus        89 --------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------  146 (300)
T TIGR03866        89 --------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------  146 (300)
T ss_pred             --------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------
Confidence                          01134678999999998888877643 34688999999999999998777788889743       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g  464 (787)
                      +          ..+..+..+   ..+..++|+|||++|++++ .+++|++||+....
T Consensus       147 ~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       147 Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            1          222222222   2356799999999986554 58999999998643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.34  E-value=1.6e-10  Score=131.57  Aligned_cols=200  Identities=17%  Similarity=0.234  Sum_probs=132.9

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCc-------EEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSS-------VCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI  243 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~-------V~sV~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~  243 (787)
                      +++++||+-+.++.+.+..|.++       |+-..+.+-+|++ +.|..|.+|...+.+.+++|.+|..           
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----------  102 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----------  102 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc-----------
Confidence            36899999988887765554321       3333333344565 4567899999999999999999876           


Q ss_pred             ccccceeEEcc---ceEEEecCC--ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccc
Q 003907          244 NVGYGPMAVGP---RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ  318 (787)
Q Consensus       244 ~~~~~~lAlsp---r~LAyas~~--~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~  318 (787)
                          +.|+++.   -.|-+++-+  .++|..|.+.                                     ..+.+|. 
T Consensus       103 ----nVC~ls~~~~~~~iSgSWD~TakvW~~~~l~-------------------------------------~~l~gH~-  140 (745)
T KOG0301|consen  103 ----NVCSLSIGEDGTLISGSWDSTAKVWRIGELV-------------------------------------YSLQGHT-  140 (745)
T ss_pred             ----ceeeeecCCcCceEecccccceEEecchhhh-------------------------------------cccCCcc-
Confidence                2444431   112222211  1222111110                                     0001110 


Q ss_pred             ccCCCCCCCCcccCCcccccc---ccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907          319 ELLPDGSSSPVSPNSVWKVGR---HAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN  395 (787)
Q Consensus       319 ~l~p~~s~~~~s~s~~~~~~~---~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir  395 (787)
                                   .+.|....   ....+++.|.+|++|.-  ++.+.+|.+|++-|..|++=+++. +++||.||. ||
T Consensus       141 -------------asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir  203 (745)
T KOG0301|consen  141 -------------ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IR  203 (745)
T ss_pred             -------------hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EE
Confidence                         11121111   12347888999999985  788999999999999999988764 668999775 99


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .|++.        |          ..+.+.. | |+.-|++++-.++++.+++++.|+|++||+..
T Consensus       204 ~w~~~--------g----------e~l~~~~-g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  204 LWDLD--------G----------EVLLEMH-G-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEecc--------C----------ceeeeee-c-cceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99983        3          4677765 4 34569999988888999999999999999976

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4.3e-12  Score=150.93  Aligned_cols=246  Identities=19%  Similarity=0.243  Sum_probs=166.2

Q ss_pred             EEeeccCCCCCCC--eEEEEEecCc-EEEEEccC--CCceeEe---eeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907           63 GFDRLEYGPSVFK--QVLLLGYQNG-FQVLDVED--ASNFNEL---VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (787)
Q Consensus        63 ~Fd~l~~~~~~~~--~vL~lG~~~G-~qVWdv~~--~~~~~el---ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa  134 (787)
                      +|++|..+....+  -+|+.|..+| |-+||...  .++-.++   .+.|.|+|+.+.|.|          |.++  +||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----------~q~n--lLA  133 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----------FQGN--LLA  133 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----------cCCc--eee
Confidence            4666555432222  4788888887 99999976  2444444   457889999999886          4444  775


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEecC---CeEEEE
Q 003907          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVG  208 (787)
Q Consensus       135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL---~f~s~V~sV~~s~---~~LaV~  208 (787)
                      .  |++                               .+.|.|||++.-+.--++   .+.+.|..|++|+   ++||.+
T Consensus       134 S--Ga~-------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~  180 (1049)
T KOG0307|consen  134 S--GAD-------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG  180 (1049)
T ss_pred             c--cCC-------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence            4  322                               258999999874433333   3557899999999   588887


Q ss_pred             eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       209 ~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      ... ++.|||++.-+.+..+..++..           .....+++.|                                 
T Consensus       181 s~sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP---------------------------------  216 (1049)
T KOG0307|consen  181 SPSGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHP---------------------------------  216 (1049)
T ss_pred             CCCCCceeccccCCCcccccccCCCc-----------cceeeeeeCC---------------------------------
Confidence            765 8999999866544433332220           0011222222                                 


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEec
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK  366 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~  366 (787)
                       ++.+.++                                 .+            ...+..-.|.+||++.- ..+..++
T Consensus       217 -~~aTql~---------------------------------~A------------s~dd~~PviqlWDlR~assP~k~~~  250 (1049)
T KOG0307|consen  217 -DHATQLL---------------------------------VA------------SGDDSAPVIQLWDLRFASSPLKILE  250 (1049)
T ss_pred             -CCceeee---------------------------------ee------------cCCCCCceeEeecccccCCchhhhc
Confidence             1111000                                 00            01123457999998764 4677889


Q ss_pred             cCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-C
Q 003907          367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-Q  444 (787)
Q Consensus       367 aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~  444 (787)
                      +|+..|.+|.|.+.+ ++|+|++.|++ |.+|+..+       |          +.++++-++  ...+.++.|+|-. .
T Consensus       251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~~--~nW~fdv~w~pr~P~  310 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPAQ--GNWCFDVQWCPRNPS  310 (1049)
T ss_pred             ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCCC--CcceeeeeecCCCcc
Confidence            999999999999977 89999999776 88999754       3          577887542  3469999999865 5


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 003907          445 WIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       445 ~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+|+++.||.|-||.+...
T Consensus       311 ~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  311 VMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             hhhhheeccceeeeeeecC
Confidence            8999999999999999754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.34  E-value=2.6e-11  Score=133.51  Aligned_cols=261  Identities=16%  Similarity=0.164  Sum_probs=166.0

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEe---e-eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNEL---V-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~el---l-s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~  150 (787)
                      -+-+-+|.+++++|||+...++-.-+   - -.+|.-++.++++|+            .|.||  |+|+           
T Consensus       431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd------------grtLi--vGGe-----------  485 (705)
T KOG0639|consen  431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD------------GRTLI--VGGE-----------  485 (705)
T ss_pred             cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC------------CceEE--eccc-----------
Confidence            44566777899999999765432211   1 125667888888875            34454  3432           


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeE-EEEeCCeEEEEECCCCcee
Q 003907          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIV-AVGLATQIYCFDALTLENK  224 (787)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~L-aV~~~~~I~iwD~~T~e~l  224 (787)
                                           ..+|.||||..-+.....+..+   ..+++++|+  ++. +.+.++.|.|||+.+..+.
T Consensus       486 ---------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  486 ---------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ---------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence                                 1489999999877665555654   568888888  333 3456788999999998888


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s  302 (787)
                      .++.+|+.             |...+.+++  .-|=.++-+     ....+|+..+..                      
T Consensus       545 rqfqGhtD-------------GascIdis~dGtklWTGGlD-----ntvRcWDlregr----------------------  584 (705)
T KOG0639|consen  545 RQFQGHTD-------------GASCIDISKDGTKLWTGGLD-----NTVRCWDLREGR----------------------  584 (705)
T ss_pred             ecccCCCC-------------CceeEEecCCCceeecCCCc-----cceeehhhhhhh----------------------
Confidence            88888876             233455543  112122211     112345543320                      


Q ss_pred             hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003907          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT  382 (787)
Q Consensus       303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~  382 (787)
                       ++.+   ..|+...   .    .-.-..+.+|      ++.+...+.|.|-... +....++.-|++-|.+|.|.+-|+
T Consensus       585 -qlqq---hdF~SQI---f----SLg~cP~~dW------lavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGk  646 (705)
T KOG0639|consen  585 -QLQQ---HDFSSQI---F----SLGYCPTGDW------LAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGK  646 (705)
T ss_pred             -hhhh---hhhhhhh---e----ecccCCCccc------eeeecccCcEEEEecC-CccceeecccccEEEEEEecccCc
Confidence             0000   0000000   0    0000111223      2345667777776654 344577888999999999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      ++++.+. +..++.|.+ |.      |          ..+++..   ....|.++..|-|.++|++||.|....||.+
T Consensus       647 wfvStGk-DnlLnawrt-Py------G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  647 WFVSTGK-DNLLNAWRT-PY------G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeecCc-hhhhhhccC-cc------c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999998 557999997 42      4          3555554   2356999999999999999999998888875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=1.1e-11  Score=142.40  Aligned_cols=224  Identities=15%  Similarity=0.221  Sum_probs=149.5

Q ss_pred             CeEEEEEecCc-EEEEEccCC--CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDA--SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~--~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      .++|+++..+| +-|||+...  .....++..|.-.|..+-|.+             ..|-+++ +|+        |   
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-------------tep~ili-SGS--------Q---  154 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-------------TEPNILI-SGS--------Q---  154 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-------------CCccEEE-ecC--------C---
Confidence            57999999999 899999663  333446778888899988764             3455544 331        2   


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEEeCC-eEEEEECCCCce-eE
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLAT-QIYCFDALTLEN-KF  225 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~-~I~iwD~~T~e~-l~  225 (787)
                                          +++|++||++..+-+.++...+ .|++|.|++   ..++.+.++ .+.+||++..++ ..
T Consensus       155 --------------------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~  214 (839)
T KOG0269|consen  155 --------------------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK  214 (839)
T ss_pred             --------------------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence                                3799999999988877776654 899999998   567777664 699999875442 22


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      .+..|..|             .-.+.+.|                                                   
T Consensus       215 k~~AH~Gp-------------V~c~nwhP---------------------------------------------------  230 (839)
T KOG0269|consen  215 KLTAHNGP-------------VLCLNWHP---------------------------------------------------  230 (839)
T ss_pred             HhhcccCc-------------eEEEeecC---------------------------------------------------
Confidence            23333322             11223333                                                   


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCC-E
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGT-L  383 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~-l  383 (787)
                                                      ++.-+++++.|++|+|||..+.+.-..+.-| ..||.+|+|-|.-+ .
T Consensus       231 --------------------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  231 --------------------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             --------------------------------CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence                                            1111234456889999999876533222223 46999999999754 6


Q ss_pred             EEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEE
Q 003907          384 LVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHV  457 (787)
Q Consensus       384 LATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhI  457 (787)
                      |||+|. +++.|+|||++.-+                .+-..+..  +...++.|+|-. |-..|.+++.|+||..
T Consensus       279 LAtcsmv~dtsV~VWDvrRPY----------------IP~~t~~e--H~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDVRRPY----------------IPYATFLE--HTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             hhhhhccccceEEEEeecccc----------------ccceeeec--cCccccceeccCCCceeeEeecCccHHHH
Confidence            888764 57889999995311                12222321  334688899964 7778999999998743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.33  E-value=1.3e-10  Score=132.40  Aligned_cols=214  Identities=15%  Similarity=0.138  Sum_probs=154.1

Q ss_pred             EEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907           77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (787)
Q Consensus        77 vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~  155 (787)
                      .|++|..++ +.||.+.. .+-..+|.+|...|+++.....              +.|  ++                  
T Consensus        73 ~l~~g~~D~~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~--------------~~~--iS------------------  117 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGED--------------GTL--IS------------------  117 (745)
T ss_pred             ceEeecccceEEEEecCC-CCchhhhhccccceeeeecCCc--------------Cce--Ee------------------
Confidence            466677766 78999854 4456788999999999986521              122  34                  


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCC
Q 003907          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPV  232 (787)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~  232 (787)
                         |+||          +|+++|-.  +++..+++.| .+|++|..=+ +.+++| .|..|++|..  ++++.++.+|..
T Consensus       118 ---gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD  180 (745)
T KOG0301|consen  118 ---GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTD  180 (745)
T ss_pred             ---cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchh
Confidence               3454          69999964  6777778765 5899988755 555554 4567999986  556777777654


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (787)
Q Consensus       233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt  312 (787)
                      -             +       |-||.-+..                                                 
T Consensus       181 ~-------------V-------RgL~vl~~~-------------------------------------------------  191 (745)
T KOG0301|consen  181 C-------------V-------RGLAVLDDS-------------------------------------------------  191 (745)
T ss_pred             h-------------e-------eeeEEecCC-------------------------------------------------
Confidence            1             1       223332210                                                 


Q ss_pred             ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (787)
Q Consensus       313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~  392 (787)
                                                  .+.++++||.|+.||+ +++++..+.+|+.-|.+++...++..++|+++|++
T Consensus       192 ----------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  192 ----------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT  242 (745)
T ss_pred             ----------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence                                        1224578999999999 78899999999999999998888899999999765


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                       +|||+..                   .+...+.--  .-.||++.+=++|. |++|++||.|+||...+.
T Consensus       243 -lriW~~~-------------------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  243 -LRIWKKD-------------------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             -EEEeecC-------------------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence             9999973                   234444311  12599999988887 678889999999998754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.32  E-value=6e-10  Score=117.02  Aligned_cols=254  Identities=15%  Similarity=0.181  Sum_probs=164.0

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ...|.|.-..|-.      ....+|+.|+.+| +|+|+++..+.. -+....++|||.++.+.-+             ..
T Consensus        25 pP~DsIS~l~FSP------~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gs   85 (347)
T KOG0647|consen   25 PPEDSISALAFSP------QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GS   85 (347)
T ss_pred             CcccchheeEecc------ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cc
Confidence            3557788888864      1345777787766 999999886432 3345567899999998832             22


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAV  207 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV  207 (787)
                      .+++.++                                 ++.+++|||.+++....-.+..+|..++|=+    ..|++
T Consensus        86 kVf~g~~---------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T  132 (347)
T KOG0647|consen   86 KVFSGGC---------------------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVT  132 (347)
T ss_pred             eEEeecc---------------------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEe
Confidence            5544222                                 3579999999998777667778999998854    46677


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      |. |.+|+.||.+.-..+.++.-   |+.                      .|+                          
T Consensus       133 GSWDKTlKfWD~R~~~pv~t~~L---PeR----------------------vYa--------------------------  161 (347)
T KOG0647|consen  133 GSWDKTLKFWDTRSSNPVATLQL---PER----------------------VYA--------------------------  161 (347)
T ss_pred             cccccceeecccCCCCeeeeeec---cce----------------------eee--------------------------
Confidence            65 67899999887665555532   210                      011                          


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                  +|....+                                    .+.+..+..|.+|+++++.  .+++
T Consensus       162 ------------~Dv~~pm------------------------------------~vVata~r~i~vynL~n~~--te~k  191 (347)
T KOG0647|consen  162 ------------ADVLYPM------------------------------------AVVATAERHIAVYNLENPP--TEFK  191 (347)
T ss_pred             ------------hhccCce------------------------------------eEEEecCCcEEEEEcCCCc--chhh
Confidence                        1100000                                    0011234567778876643  3455


Q ss_pred             cCCCC----eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEE
Q 003907          367 AHTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDI  437 (787)
Q Consensus       367 aH~~p----IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-----~a~I~sl  437 (787)
                      .|++|    +.||+.-+|....|-||.+|+ +-|..+.+.       .      +...-.++.+|-..     ...|.+|
T Consensus       192 ~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------~------~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  192 RIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------N------PKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             hhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------C------ccCceeEEEeccCCCCCCceEEecce
Confidence            55554    568888788777789999897 778887541       0      01123455555211     1247899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                      +|.|.-..|++++.|||..+||-+..........|..
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q  294 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ  294 (347)
T ss_pred             EeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence            9999999999999999999999765444444444543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.1e-09  Score=110.94  Aligned_cols=99  Identities=21%  Similarity=0.313  Sum_probs=82.2

Q ss_pred             cccCCCceEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~a--H-----~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      +++++|.+|+.||++-..++.++..  |     .+.|.+++.+|.|++||++-.| ....+||++-       |      
T Consensus       198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-ssc~lydirg-------~------  263 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-SSCMLYDIRG-------G------  263 (350)
T ss_pred             EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-CceEEEEeeC-------C------
Confidence            3567899999999998888887642  3     3579999999999999999884 4589999952       2      


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                          +.+..++-  +.+.|.++.|||-..||.++|.|..|++=|+.
T Consensus       264 ----r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  264 ----RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ----ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence                56666653  56789999999999999999999999999886

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=5.2e-11  Score=128.82  Aligned_cols=241  Identities=14%  Similarity=0.147  Sum_probs=152.7

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCcccc
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..++|...|.+..|-      +.++.+|++|.+.-+.+||++ +|+++..+... .-.|.++.+.|+.        |+  
T Consensus       264 tlvgh~~~V~yi~wS------PDdryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~--  326 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWS------PDDRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR--  326 (519)
T ss_pred             eeecccCceEEEEEC------CCCCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence            467788999999995      336888888888889999996 46677766544 5678999999863        32  


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC---Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP---RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~---~~  204 (787)
                        +   |+|.                               .++++.-||+. |+.....+.-  ..|+++++..   .+
T Consensus       327 --~---V~Gs-------------------------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v  369 (519)
T KOG0293|consen  327 --F---VTGS-------------------------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV  369 (519)
T ss_pred             --e---EecC-------------------------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence              2   3331                               23789999985 5555555543  3789999876   46


Q ss_pred             EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      ++++.+..|.+|+..+.....-+.++. |             ...+.+|- .-+|...    +...+...|+.-.+    
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~lise~~-~-------------its~~iS~d~k~~Lvn----L~~qei~LWDl~e~----  427 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRGLISEEQ-P-------------ITSFSISKDGKLALVN----LQDQEIHLWDLEEN----  427 (519)
T ss_pred             EEEecccceeeechhhhhhhccccccC-c-------------eeEEEEcCCCcEEEEE----cccCeeEEeecchh----
Confidence            677778889999988765543333321 1             23444543 1111111    01112222332211    


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccc-cccccccccCCCceEEEEECCCCcEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWK-VGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~-~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                              .+                ++++.++-+..+       .-. +++. .+..-+++++.|+.|+||+..+++++
T Consensus       428 --------~l----------------v~kY~Ghkq~~f-------iIr-SCFgg~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  428 --------KL----------------VRKYFGHKQGHF-------IIR-SCFGGGNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             --------hH----------------HHHhhcccccce-------EEE-eccCCCCcceEEecCCCceEEEEEccCCcee
Confidence                    00                011111110000       000 0011 11123568899999999999999999


Q ss_pred             EEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCC
Q 003907          363 SQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~  400 (787)
                      ..+.+|...|+|++++| +-.+||+||+||+ ||||-..
T Consensus       476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~  513 (519)
T KOG0293|consen  476 AVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPS  513 (519)
T ss_pred             EeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence            99999999999999999 4568999999776 9999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.30  E-value=4.9e-10  Score=122.13  Aligned_cols=241  Identities=17%  Similarity=0.223  Sum_probs=163.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.-.|+|+.|.+.       ...++.+..+ -|+||.+... ....++.-|+++|..+..-|+.           . 
T Consensus       257 ~~Gh~kki~~v~~~~~-------~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tg-----------e-  316 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKD-------LDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTG-----------E-  316 (506)
T ss_pred             ccCcceEEEEEEeccc-------hhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCC-----------c-
Confidence            5677888999999862       2244555554 5999999554 4556777899999999988753           2 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--cEEEEEecCC--eE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV  205 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s--~V~sV~~s~~--~L  205 (787)
                       +|+..+                                 .+++..|.|.++|..+...... +  .+.+..|.|+  ++
T Consensus       317 -YllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif  362 (506)
T KOG0289|consen  317 -YLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF  362 (506)
T ss_pred             -EEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence             554311                                 1368889999999988877664 3  4789999985  44


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +.+. +..|+|||+........+.+|..|             .       +-|+|+.+.                     
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~-------------v-------k~i~FsENG---------------------  401 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP-------------V-------KAISFSENG---------------------  401 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCc-------------e-------eEEEeccCc---------------------
Confidence            4454 457999999877655555444433             1       223333321                     


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                                                     |+                        .+.+..|+.|++||++..+...+
T Consensus       402 -------------------------------Y~------------------------Lat~add~~V~lwDLRKl~n~kt  426 (506)
T KOG0289|consen  402 -------------------------------YW------------------------LATAADDGSVKLWDLRKLKNFKT  426 (506)
T ss_pred             -------------------------------eE------------------------EEEEecCCeEEEEEehhhcccce
Confidence                                           11                        12345678899999998887777


Q ss_pred             eccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          365 FKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       365 ~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      |.-- ..+|.+++|+++|++|+.++.   .++||-....         .-.|    .++.++.  .+.+....+.|..+.
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~---------~k~W----~~~~~~~--~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKK---------TKSW----TEIKELA--DHSGLSTGVRFGEHA  488 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecc---eeEEEEEecc---------cccc----eeeehhh--hcccccceeeecccc
Confidence            7643 348999999999999999855   4677765320         0001    2232322  122356789999999


Q ss_pred             CEEEEEeCCCeEEEEeC
Q 003907          444 QWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl  460 (787)
                      ++|+++|.|...+|+.+
T Consensus       489 q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  489 QYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeeccchhheEEeec
Confidence            99999999999999875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.4e-10  Score=122.12  Aligned_cols=248  Identities=18%  Similarity=0.201  Sum_probs=159.5

Q ss_pred             EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEE
Q 003907           59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA  137 (787)
Q Consensus        59 v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~  137 (787)
                      -..+.|++       -+..|++|..+| +-|||.... ....+++.|--||.++.++++            .| +|+..+
T Consensus        26 a~~~~Fs~-------~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~d------------gr-~LltsS   84 (405)
T KOG1273|consen   26 AECCQFSR-------WGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRD------------GR-KLLTSS   84 (405)
T ss_pred             cceEEecc-------CcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCC------------CC-Eeeeec
Confidence            34566765       256999999999 999999754 477889999999999999974            23 343322


Q ss_pred             cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE--EeCCeE
Q 003907          138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV--GLATQI  213 (787)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV--~~~~~I  213 (787)
                                                       .+..|.+||+..|.+++.++|+++|+.+.+.|  +..++  -.+..-
T Consensus        85 ---------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp  131 (405)
T KOG1273|consen   85 ---------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESP  131 (405)
T ss_pred             ---------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCc
Confidence                                             23589999999999999999999999999977  22222  223333


Q ss_pred             EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCce
Q 003907          214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL  293 (787)
Q Consensus       214 ~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~l  293 (787)
                      ++-+..+.  .+++                             |+..++.       ..            ..       
T Consensus       132 ~vi~~s~~--~h~~-----------------------------Lp~d~d~-------dl------------n~-------  154 (405)
T KOG1273|consen  132 VVIDFSDP--KHSV-----------------------------LPKDDDG-------DL------------NS-------  154 (405)
T ss_pred             EEEEecCC--ceee-----------------------------ccCCCcc-------cc------------cc-------
Confidence            33332221  1111                             1111100       00            00       


Q ss_pred             eEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCe
Q 003907          294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPI  372 (787)
Q Consensus       294 va~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~-~pI  372 (787)
                      +++                               ...+...+    ..+.++...|.+.|+|..+.++++.++--+ ..|
T Consensus       155 sas-------------------------------~~~fdr~g----~yIitGtsKGkllv~~a~t~e~vas~rits~~~I  199 (405)
T KOG1273|consen  155 SAS-------------------------------HGVFDRRG----KYIITGTSKGKLLVYDAETLECVASFRITSVQAI  199 (405)
T ss_pred             ccc-------------------------------cccccCCC----CEEEEecCcceEEEEecchheeeeeeeechheee
Confidence            000                               00011111    123356678999999999999999998766 889


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      ..+-|+..|+.|+.-.. +++||+|++..--..+..|        .....++++--.....-.+++||.||.|++++|..
T Consensus       200 K~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~  270 (405)
T KOG1273|consen  200 KQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR  270 (405)
T ss_pred             eEEEEeccCcEEEEecC-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEecccc
Confidence            99999999999999888 7789999986311100001        11222333211112234689999999999998865


Q ss_pred             -CeEEEEeCC
Q 003907          453 -GTCHVFVLS  461 (787)
Q Consensus       453 -gTVhIwdl~  461 (787)
                       ..+.||.-.
T Consensus       271 aHaLYIWE~~  280 (405)
T KOG1273|consen  271 AHALYIWEKS  280 (405)
T ss_pred             ceeEEEEecC
Confidence             468899743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=7e-12  Score=131.76  Aligned_cols=226  Identities=18%  Similarity=0.176  Sum_probs=150.6

Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEE--------eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ--------FKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~--------~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd  398 (787)
                      ....|+|++..    +++++.||-|.|||..+++....        |--|+.+|.|++||.|..+|||++.||+ |+||.
T Consensus       217 EcA~FSPDgqy----LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk-IKvWr  291 (508)
T KOG0275|consen  217 ECARFSPDGQY----LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK-IKVWR  291 (508)
T ss_pred             hheeeCCCCce----EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc-EEEEE
Confidence            33445555543    45788999999999999875544        3457889999999999999999999887 99999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      +.+       |          .++.+|.|.++. -|+++.||.|+..|.++|.|.|++|--+...+....+++|++-+..
T Consensus       292 i~t-------G----------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  292 IET-------G----------QCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             Eec-------c----------hHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            976       4          578888776554 5999999999999999999999999999988888889999753322


Q ss_pred             CcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCC----ccccccccccccCCccccccceeeeecccCcc
Q 003907          479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG----WLNTVSNASASSMGKVFVPSGAVAAVFHNSIA  554 (787)
Q Consensus       479 ~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~----w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~  554 (787)
                      ..+.                    +.++- +      |..++.|    |.+-.+.               |...|...  
T Consensus       354 a~ft--------------------~dG~~-i------isaSsDgtvkvW~~Ktte---------------C~~Tfk~~--  389 (508)
T KOG0275|consen  354 ATFT--------------------DDGHH-I------ISASSDGTVKVWHGKTTE---------------CLSTFKPL--  389 (508)
T ss_pred             eEEc--------------------CCCCe-E------EEecCCccEEEecCcchh---------------hhhhccCC--
Confidence            2111                    11221 1      1112222    4332211               11222111  


Q ss_pred             cccccc---ccccCccccEEEEcCCccEEEEecccCCCCCCCCCCCcccccccccccCCceeEeecccccceeeccC
Q 003907          555 HSSQHV---NSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRS  628 (787)
Q Consensus       555 ~~~~~~---~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~  628 (787)
                      ....++   +.-.++.+|+.|..-+-.+|+-++.-+.       +..-.++-.|  .-+-+.-.+.|+.+|--|-..
T Consensus       390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-------VrsfsSGkRE--gGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-------VRSFSSGKRE--GGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-------EeeeccCCcc--CCceEEEEecCCCcEEEEEcc
Confidence            001111   1122457899999999999999886542       1111111111  134677889999999999654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=5.9e-10  Score=117.63  Aligned_cols=211  Identities=12%  Similarity=0.097  Sum_probs=131.0

Q ss_pred             CCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      +-+|+|||+++...+..|-. .+.|.++.|.+     .+|..+.+++|.+|++...++++++..|...            
T Consensus        62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------  129 (362)
T KOG0294|consen   62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------  129 (362)
T ss_pred             CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence            36899999999988887754 46899999976     3455556678999999999999999987652            


Q ss_pred             ccceeEEcc-ceEE--EecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          246 GYGPMAVGP-RWLA--YASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       246 ~~~~lAlsp-r~LA--yas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                       ++-+++.| .-||  .+++..+      ..|...++..                          +.+..|..+..    
T Consensus       130 -Vt~lsiHPS~KLALsVg~D~~l------r~WNLV~Gr~--------------------------a~v~~L~~~at----  172 (362)
T KOG0294|consen  130 -VTDLSIHPSGKLALSVGGDQVL------RTWNLVRGRV--------------------------AFVLNLKNKAT----  172 (362)
T ss_pred             -cceeEecCCCceEEEEcCCcee------eeehhhcCcc--------------------------ceeeccCCcce----
Confidence             34577777 3333  3444321      1122222100                          00011111110    


Q ss_pred             CCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                           .+.+++.+..     ........|-||.+.+-.+...+.- ...+.++.|-. +..|++|.+++ .|++||... 
T Consensus       173 -----~v~w~~~Gd~-----F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds-  238 (362)
T KOG0294|consen  173 -----LVSWSPQGDH-----FVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNE-WISLKDTDS-  238 (362)
T ss_pred             -----eeEEcCCCCE-----EEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCc-eEEEeccCC-
Confidence                 0111111110     0112356677888776554433322 14477888864 55677888755 599999742 


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                            +          .++..+. + |.++|.+|.+  .|++.+|+++|+||.|+|||++..
T Consensus       239 ------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  239 ------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                  2          3555554 2 4467999984  578999999999999999999754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=9.3e-11  Score=123.44  Aligned_cols=256  Identities=14%  Similarity=0.184  Sum_probs=182.1

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcE-EEEEccCCCceeEeeee--------ccCcEEEEEEecCCCCCCCCC
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF-QVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~-qVWdv~~~~~~~ells~--------~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      +.|..+-.|.|.       .+++.|+.|+-+|| .|||.. +|++++-+.-        +|.+|.|+.|.-+        
T Consensus       211 g~KSh~EcA~FS-------PDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--------  274 (508)
T KOG0275|consen  211 GQKSHVECARFS-------PDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--------  274 (508)
T ss_pred             ccccchhheeeC-------CCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeeccc--------
Confidence            344556666664       36899999999995 899994 5777665542        4578888877632        


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--CCCcEEEEEecC
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP  202 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~--f~s~V~sV~~s~  202 (787)
                           .-+||.  |.                               -+++|++|-+.+|++++.++  +...|.++.|++
T Consensus       275 -----sEMlAs--Gs-------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr  316 (508)
T KOG0275|consen  275 -----SEMLAS--GS-------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR  316 (508)
T ss_pred             -----HHHhhc--cC-------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence                 125543  21                               13689999999999999886  334899999987


Q ss_pred             ---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          203 ---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       203 ---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                         ++|..+.+..++|.-+..++++..+.+|..-         +    +...       |..                  
T Consensus       317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---------v----n~a~-------ft~------------------  358 (508)
T KOG0275|consen  317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY---------V----NEAT-------FTD------------------  358 (508)
T ss_pred             CcchhhcccccceEEEeccccchhHHHhcCcccc---------c----cceE-------EcC------------------
Confidence               6788889999999999999999988876541         0    0011       111                  


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                                                 +|+               .+.+++.||+|+||+..+.
T Consensus       359 -------------------------------------------dG~---------------~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  359 -------------------------------------------DGH---------------HIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             -------------------------------------------CCC---------------eEEEecCCccEEEecCcch
Confidence                                                       010               1234578999999999999


Q ss_pred             cEEEEecc--CCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccEE
Q 003907          360 AIISQFKA--HTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQ  435 (787)
Q Consensus       360 ~~v~~~~a--H~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-a~I~  435 (787)
                      +++.+|+.  .+-+|+.+-.=| +-..++.|.. .+++.|-++.        |          +-+..+..|... +...
T Consensus       381 eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~q--------G----------QvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  381 ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQ--------G----------QVVRSFSSGKREGGDFI  441 (508)
T ss_pred             hhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEecc--------c----------eEEeeeccCCccCCceE
Confidence            99999974  466888877766 4456777766 4457787773        3          344444443221 2466


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          436 DICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       436 slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      +++.||.|.|+.+.+.|+.+.-|.+...+-+..+.-|...+.+
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG  484 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG  484 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence            7889999999999999999999999877777777666555544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=4.5e-12  Score=144.44  Aligned_cols=175  Identities=17%  Similarity=0.228  Sum_probs=132.8

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      .++-||..-.-..+..|..+ ++|.+|+|+.  .+|+.|. ++.|++||+...+..++|.+|-.+             ..
T Consensus        50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-------------~~  116 (825)
T KOG0267|consen   50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-------------IT  116 (825)
T ss_pred             eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC-------------cc
Confidence            46777877666666677765 5899999987  5666655 458999999999988888876553             01


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .++|.|    |+-                                                      |            
T Consensus       117 sv~f~P----~~~------------------------------------------------------~------------  126 (825)
T KOG0267|consen  117 SVDFHP----YGE------------------------------------------------------F------------  126 (825)
T ss_pred             eeeecc----ceE------------------------------------------------------E------------
Confidence            223322    000                                                      0            


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                   .+.++.|+.+.+||.+...+...+++|...|..+.|+|+|++++.+.+ +..++|||+..       
T Consensus       127 -------------~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-d~tvki~d~~a-------  185 (825)
T KOG0267|consen  127 -------------FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-DNTVKIWDLTA-------  185 (825)
T ss_pred             -------------eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-cceeeeecccc-------
Confidence                         012456788999999999999999999999999999999999999998 66799999843       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      |          ..+.+|. + +...|+.+.|.|-.-.|+.||.|+|+++||++++
T Consensus       186 g----------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  186 G----------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             c----------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeecccee
Confidence            3          2344443 1 2356889999999999999999999999999954

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.28  E-value=1.3e-10  Score=122.28  Aligned_cols=247  Identities=13%  Similarity=0.132  Sum_probs=151.3

Q ss_pred             EEECCCCeEEEEE----e-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          177 FYSFQSHCYEHVL----R-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       177 lWdlktg~~v~tL----~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +=.++++....++    . +...|+.|+...  .++..+. +.+..||.+.+++++.+..+|...             ++
T Consensus       128 vssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-------------VN  194 (481)
T KOG0300|consen  128 VSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS-------------VN  194 (481)
T ss_pred             eeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc-------------ee
Confidence            3355666654444    3 346899998765  4566554 456999999999999998887652             57


Q ss_pred             eeEEcc-c-eEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc---eeEeeehhhhhhhhcccc----eeecccccc
Q 003907          249 PMAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS---LVARYAMEHSKQFAAGLS----KTLSKYCQE  319 (787)
Q Consensus       249 ~lAlsp-r-~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~---lva~~a~d~sk~la~G~~----ktls~~~~~  319 (787)
                      .+.|.+ + +++.++.+.    + ...|+..-....+....|.+-+   -.-+ . |.-..-..+-.    .++.--..+
T Consensus       195 sikfh~s~~L~lTaSGD~----t-aHIW~~av~~~vP~~~a~~~hSsEeE~e~-s-De~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  195 SIKFHNSGLLLLTASGDE----T-AHIWKAAVNWEVPSNNAPSDHSSEEEEEH-S-DEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             eEEeccccceEEEccCCc----c-hHHHHHhhcCcCCCCCCCCCCCchhhhhc-c-cccccccccccccCCceeeeeeee
Confidence            788888 3 344443321    0 1123321111111111111000   0000 0 00000000000    000000000


Q ss_pred             cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      +  .+ ........+|-.++.+..+++-|.+..+||+++++++..+.+|...++.++-+|..++++|+|. ++++|+||.
T Consensus       268 l--tg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDF  343 (481)
T KOG0300|consen  268 L--TG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDF  343 (481)
T ss_pred             e--ec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccc
Confidence            0  01 1122333456666666678888999999999999999999999999999999999999999998 667999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      ++..                ..+..|+ |+ ...|++..|.-|.+ ++++|+|.||+|||+.....+
T Consensus       344 ReaI----------------~sV~VFQ-GH-tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  344 REAI----------------QSVAVFQ-GH-TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             hhhc----------------ceeeeec-cc-ccceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence            6521                2344454 54 46799999999875 789999999999999876554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.27  E-value=1.9e-10  Score=126.15  Aligned_cols=218  Identities=17%  Similarity=0.198  Sum_probs=148.1

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      .++++|++|..+- |+|||+++ .+-...+..|-+.|..+.|--.+           + .|. +.+              
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt-----------~-~ly-s~s--------------  263 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGT-----------S-ELY-SAS--------------  263 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCc-----------c-cee-eee--------------
Confidence            4688999998875 89999965 55667789999999999876322           1 132 222              


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEE
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSV  227 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl  227 (787)
                                         .+++|++|++..-.++.++- +++.|.+|....  +.+.|+ -|.++++|++..-. ...+
T Consensus       264 -------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif  323 (479)
T KOG0299|consen  264 -------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF  323 (479)
T ss_pred             -------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence                               24789999999999988885 457899998755  555566 46789999983211 0111


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~  307 (787)
                      ..+..                    ++..+||-.+.                                            
T Consensus       324 rg~~~--------------------sidcv~~In~~--------------------------------------------  339 (479)
T KOG0299|consen  324 RGGEG--------------------SIDCVAFINDE--------------------------------------------  339 (479)
T ss_pred             eCCCC--------------------CeeeEEEeccc--------------------------------------------
Confidence            11100                    00112222211                                            


Q ss_pred             ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCC-----------CCeEEE
Q 003907          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT-----------SPISAL  375 (787)
Q Consensus       308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~-----------~pIsaL  375 (787)
                                                       -+.+++.+|.|.+|++..++++.+.+ +|.           ..|++|
T Consensus       340 ---------------------------------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl  386 (479)
T KOG0299|consen  340 ---------------------------------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL  386 (479)
T ss_pred             ---------------------------------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence                                             01245678999999999988877664 441           278999


Q ss_pred             EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       376 aFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      +.-|...++||+|.+|. ||+|.+.+..             .....++.+.   -..-|.+|+|+++|++|+++-..
T Consensus       387 a~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  387 AVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             EecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEeccc
Confidence            99999999999999785 9999996521             0123555554   23459999999999988777443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.27  E-value=1.9e-10  Score=120.24  Aligned_cols=109  Identities=16%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCC-CccccCC-cceEEE
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGN-HKYDWNS-SHVHLY  423 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~-~~~~~~~-s~~~l~  423 (787)
                      .+-.|++-|+.+|..-+++.+|.+.|.++.|+|... .|||||.||. ||+||++...     |+ ...|... ..-+..
T Consensus       166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRras-----gcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRAS-----GCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeeccc-----ceeEEeecccCccCccc
Confidence            345789999999999999999999999999999766 5899999886 9999996421     10 0000000 001111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      + .+-.+...|..+||+.||++|++++.|..+++|+...
T Consensus       240 ~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  240 K-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             c-ccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            1 1223445799999999999999999999999999865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.27  E-value=1.3e-10  Score=122.06  Aligned_cols=258  Identities=18%  Similarity=0.275  Sum_probs=163.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---CceeEe--------------eeeccCcEEEEEEecC
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNFNEL--------------VSKRDGPVSFLQMQPF  116 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~---~~~~el--------------ls~~dg~V~~v~~lP~  116 (787)
                      ||..+..+.|..       ++.++++|..+. |+|+|++-.   .+.+++              |=.|-.+|..+.|-|.
T Consensus       111 HK~~cR~aafs~-------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  111 HKSPCRAAAFSP-------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             cccceeeeeeCC-------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            566667777753       588999999985 999999710   112222              2234456777777653


Q ss_pred             CCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEeCCC
Q 003907          117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLRFRS  193 (787)
Q Consensus       117 P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~---v~tL~f~s  193 (787)
                                   ..+|+.  +.                               .+++|+|+|+.+-..   .+.++--.
T Consensus       184 -------------e~ILiS--~s-------------------------------rD~tvKlFDfsK~saKrA~K~~qd~~  217 (430)
T KOG0640|consen  184 -------------ETILIS--GS-------------------------------RDNTVKLFDFSKTSAKRAFKVFQDTE  217 (430)
T ss_pred             -------------hheEEe--cc-------------------------------CCCeEEEEecccHHHHHHHHHhhccc
Confidence                         225533  21                               247999999975432   33444456


Q ss_pred             cEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcc
Q 003907          194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG  270 (787)
Q Consensus       194 ~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g  270 (787)
                      +|++|.|.|  .+|++|.+. .+++||+.|.++...    .+|+-  |..         -++  .-+-|++.        
T Consensus       218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----anPd~--qht---------~ai--~~V~Ys~t--------  272 (430)
T KOG0640|consen  218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----ANPDD--QHT---------GAI--TQVRYSST--------  272 (430)
T ss_pred             eeeeEeecCCCceEEEecCCCceeEEeccceeEeee----cCccc--ccc---------cce--eEEEecCC--------
Confidence            899999988  799999876 589999999875322    12210  000         000  00111110        


Q ss_pred             eeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCce
Q 003907          271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI  350 (787)
Q Consensus       271 ~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~  350 (787)
                                          |.                                                --++++.||.
T Consensus       273 --------------------~~------------------------------------------------lYvTaSkDG~  284 (430)
T KOG0640|consen  273 --------------------GS------------------------------------------------LYVTASKDGA  284 (430)
T ss_pred             --------------------cc------------------------------------------------EEEEeccCCc
Confidence                                00                                                0125678999


Q ss_pred             EEEEECCCCcEEEEec-cCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-CCCCC------cc---
Q 003907          351 VVVKDFVTRAIISQFK-AHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS-GSGNH------KY---  413 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~-aH~~-pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-----~~-~~g~~------~~---  413 (787)
                      |+|||-.+++++.+|. +|.+ .|.+..|..+|+++++.+. +.++++|.+.+...     +- .+|.+      .+   
T Consensus       285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht  363 (430)
T KOG0640|consen  285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT  363 (430)
T ss_pred             EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence            9999999999999995 7864 7899999999999999998 56799999865321     00 01110      00   


Q ss_pred             ---------------ccCCc-ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          414 ---------------DWNSS-HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       414 ---------------~~~~s-~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                                     -|++. ..++..+.-| ++..+..|.-||.+--++++|+|-.+++|--
T Consensus       364 EdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  364 EDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCceeeecccceeeeeee
Confidence                           11111 0111122234 3455888999999999999999999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.26  E-value=2.6e-11  Score=129.46  Aligned_cols=214  Identities=16%  Similarity=0.145  Sum_probs=136.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      ++.|+|||+.+.+++.+++.+ +.|..|.+.. .++.||.+.+|+.|-+.- ..++++.+...-       .++    ..
T Consensus        88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~gI----dh  155 (433)
T KOG0268|consen   88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LGI----DH  155 (433)
T ss_pred             CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------ccc----cc
Confidence            368999999999999999976 4999999987 667778888999998654 466666643220       000    00


Q ss_pred             eEEccceEEEecCCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      +- ...-.|++|.+..+       |+.... |..+.+.                     |              -.+...
T Consensus       156 ~~-~~~~FaTcGe~i~I-------WD~~R~~Pv~smsw---------------------G--------------~Dti~s  192 (433)
T KOG0268|consen  156 HR-KNSVFATCGEQIDI-------WDEQRDNPVSSMSW---------------------G--------------ADSISS  192 (433)
T ss_pred             cc-ccccccccCceeee-------cccccCCccceeec---------------------C--------------CCceeE
Confidence            00 00223455544333       332211 1111000                     0              001112


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                      ..+|+....   -++.+..|+.|.|||++...++..+.- +..-+.|+|+|.+--+++|++ |+.+-.||++..      
T Consensus       193 vkfNpvETs---ILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l------  261 (433)
T KOG0268|consen  193 VKFNPVETS---ILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL------  261 (433)
T ss_pred             EecCCCcch---heeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh------
Confidence            233332211   245677899999999999887665432 234467999998877877877 677999998542      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .          +++.. ++|+.. .|.++.|||.|+-+++||.|.||+||.++..
T Consensus       262 ~----------~p~~v-~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  262 S----------RPLNV-HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             c----------ccchh-hcccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence            0          23322 345443 4999999999999999999999999998763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=2.8e-10  Score=124.32  Aligned_cols=179  Identities=15%  Similarity=0.134  Sum_probs=120.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      ++||++||+.+|++..++.++ ..|..+.|.+   .+|+.| .+++|.++|.+...+       .               
T Consensus       265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s---------------  322 (463)
T KOG0270|consen  265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------S---------------  322 (463)
T ss_pred             CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------c---------------
Confidence            579999999999999999955 5999999987   566665 577899999764210       0               


Q ss_pred             cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                        ...    |=+-+.-       -++.|+...+                                               
T Consensus       323 --~~~----wk~~g~V-------Ekv~w~~~se-----------------------------------------------  342 (463)
T KOG0270|consen  323 --GKE----WKFDGEV-------EKVAWDPHSE-----------------------------------------------  342 (463)
T ss_pred             --Cce----EEeccce-------EEEEecCCCc-----------------------------------------------
Confidence              001    1111110       0111222110                                               


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcc
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCM  404 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~  404 (787)
                        .           .+..+..||+|+-+|+++. +++.++++|.++|++|++++. -.+|+|+|.++ .++||++...  
T Consensus       343 --~-----------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~--  406 (463)
T KOG0270|consen  343 --N-----------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVD--  406 (463)
T ss_pred             --e-----------eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCC--
Confidence              0           0112346899999999885 899999999999999999985 45789999955 6999998431  


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~  463 (787)
                                 ++...+.+.+.-|    ...|.++.|+- -+||.|+..+.++|||+...
T Consensus       407 -----------~~~~v~~~~~~~~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  407 -----------SPKSVKEHSFKLG----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             -----------CCccccccccccc----ceeecccCCCcceEEEecCccceEEEeecccC
Confidence                       1111222222222    25678888875 46888888889999999765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=7.2e-10  Score=116.99  Aligned_cols=222  Identities=15%  Similarity=0.166  Sum_probs=141.8

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .+..++.|..+ .|+|||+....+ ...+..|.|.|.+++|.|.         +..+ .|| . +.+             
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~q-lg~ll~HagsitaL~F~~~---------~S~s-hLl-S-~sd-------------  105 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQ-LGILLSHAGSITALKFYPP---------LSKS-HLL-S-GSD-------------  105 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhh-hcceeccccceEEEEecCC---------cchh-hee-e-ecC-------------
Confidence            36688888876 699999965444 3456667999999999874         3333 243 2 222             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-C--eEEEEeCCeEEEEECCCCceeEEEE
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-R--IVAVGLATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~--~LaV~~~~~I~iwD~~T~e~l~tl~  228 (787)
                                         ++.|.+|+...=+++++++-+ ..|..|++.| .  -|.|+.|+.++.||+.+|+.-+.+.
T Consensus       106 -------------------DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~  166 (362)
T KOG0294|consen  106 -------------------DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN  166 (362)
T ss_pred             -------------------CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence                               258999999999999999865 5899999988 3  3456778889999999998766654


Q ss_pred             ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      -...+              ..+.++|  .+.+.....      +.-.+|.-..                ++.++...+  
T Consensus       167 L~~~a--------------t~v~w~~~Gd~F~v~~~~------~i~i~q~d~A----------------~v~~~i~~~--  208 (362)
T KOG0294|consen  167 LKNKA--------------TLVSWSPQGDHFVVSGRN------KIDIYQLDNA----------------SVFREIENP--  208 (362)
T ss_pred             cCCcc--------------eeeEEcCCCCEEEEEecc------EEEEEecccH----------------hHhhhhhcc--
Confidence            22111              1133333  112222111      1111111000                000000000  


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE--CCCCCEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF--DPSGTLL  384 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF--SpdG~lL  384 (787)
                         .+.   .|...+                .......+..++.|.+||..+..+...|.+|...|-.+.+  +|++.+|
T Consensus       209 ---~r~---l~~~~l----------------~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  209 ---KRI---LCATFL----------------DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             ---ccc---eeeeec----------------CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence               000   010000                0012335667899999999999999999999999999984  7889999


Q ss_pred             EEEEcCCCEEEEEeCCC
Q 003907          385 VTASVYGNNINIFRIMP  401 (787)
Q Consensus       385 ATaS~dG~~IrVWdi~~  401 (787)
                      +|+|.||. |+|||+..
T Consensus       267 vTaSSDG~-I~vWd~~~  282 (362)
T KOG0294|consen  267 VTASSDGF-IKVWDIDM  282 (362)
T ss_pred             EEeccCce-EEEEEccc
Confidence            99999885 99999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.24  E-value=2.3e-10  Score=122.88  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=84.3

Q ss_pred             ccccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      +++++.||.|+|||++.+   .++.. ++|.+-|+.|.|+.+-.+||+|+++|+ ++|||++....    +         
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~----~---------  337 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKS----G---------  337 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccC----C---------
Confidence            567899999999999987   33433 899999999999999889999999886 99999975311    1         


Q ss_pred             ceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC
Q 003907          419 HVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~  463 (787)
                       .++..+.+  |.+.|++|.|+| +...||+++.|..|.|||+.-.
T Consensus       338 -~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  338 -QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             -CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence             35555554  456899999997 4578899999999999999743

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.23  E-value=5.7e-10  Score=122.46  Aligned_cols=176  Identities=11%  Similarity=0.111  Sum_probs=128.7

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++.|.|||.++.+.++++..+ ..|.++.|-.   ++.+.+.+..|++|++..+..+.++.+|+.-              
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------------  288 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------------  288 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence            368999999999999998755 6999998865   5666777889999999998888888777651              


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                       .++++-    .+        .+++                                                       
T Consensus       289 -v~~Ida----L~--------reR~-------------------------------------------------------  300 (479)
T KOG0299|consen  289 -VLGIDA----LS--------RERC-------------------------------------------------------  300 (479)
T ss_pred             -eeeech----hc--------ccce-------------------------------------------------------
Confidence             222210    00        0000                                                       


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                                    ...+..|.++++|++.. ...-.|.+|.+.|-|++|=. ...++|||++|. |-+|++..-     
T Consensus       301 --------------vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~-IaLWs~~KK-----  358 (479)
T KOG0299|consen  301 --------------VTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGS-IALWSLLKK-----  358 (479)
T ss_pred             --------------EEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCce-EEEeeeccc-----
Confidence                          00234689999999954 44567889999999999974 468889999886 999998531     


Q ss_pred             CCCCccccCCcceEEEEEe--cccc--------cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          408 SGNHKYDWNSSHVHLYKLH--RGIT--------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~--rG~~--------~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                                  .+++..+  -|..        +..|++|+-.|.+..+|+||.+|.|+||.+++.
T Consensus       359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                        1222221  1111        126999999999999999999999999999863

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.23  E-value=1e-11  Score=135.95  Aligned_cols=207  Identities=15%  Similarity=0.206  Sum_probs=139.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEe--cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~--s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      +.|-.+|..++.+.+++.....|++|.|  |.+++||+...-+||||- .|..+|+|..+..              +..+
T Consensus       151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~--------------v~rL  215 (545)
T KOG1272|consen  151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIR--------------VARL  215 (545)
T ss_pred             cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCc--------------hhhh
Confidence            5788999999999999999999999998  568999999999999995 4556888876432              2234


Q ss_pred             EEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       251 Alsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .|=|  -+||.+++.      |-..++..+           -|.+|+..+.        |     .         +....
T Consensus       216 eFLPyHfLL~~~~~~------G~L~Y~DVS-----------~GklVa~~~t--------~-----~---------G~~~v  256 (545)
T KOG1272|consen  216 EFLPYHFLLVAASEA------GFLKYQDVS-----------TGKLVASIRT--------G-----A---------GRTDV  256 (545)
T ss_pred             cccchhheeeecccC------CceEEEeec-----------hhhhhHHHHc--------c-----C---------Cccch
Confidence            4444  345555543      222233221           0333332110        0     0         00011


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                      +.-||-...    +-.+...|+|.+|.-...+++..|..|.++|++|+++++|+|+||++. ++.++|||++..      
T Consensus       257 m~qNP~NaV----ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------  325 (545)
T KOG1272|consen  257 MKQNPYNAV----IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------  325 (545)
T ss_pred             hhcCCccce----EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence            111221111    224678899999999999999999999999999999999999999999 556999999642      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                                 .++..++.   ......++||.-|. ||.+- -..|+||.=
T Consensus       326 -----------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~~-G~~v~iw~d  361 (545)
T KOG1272|consen  326 -----------YQLHTYRT---PHPASNLSLSQKGL-LALSY-GDHVQIWKD  361 (545)
T ss_pred             -----------cccceeec---CCCccccccccccc-eeeec-CCeeeeehh
Confidence                       24444432   23467899998773 44443 346999963

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=2.4e-09  Score=112.88  Aligned_cols=248  Identities=16%  Similarity=0.098  Sum_probs=157.5

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ...+|+|.-+.|+.       ..+-|+++..+| +++||++.. . ..+.=.|++|+...+|.+.            +  
T Consensus        10 npP~d~IS~v~f~~-------~~~~LLvssWDgslrlYdv~~~-~-l~~~~~~~~plL~c~F~d~------------~--   66 (323)
T KOG1036|consen   10 NPPEDGISSVKFSP-------SSSDLLVSSWDGSLRLYDVPAN-S-LKLKFKHGAPLLDCAFADE------------S--   66 (323)
T ss_pred             CCChhceeeEEEcC-------cCCcEEEEeccCcEEEEeccch-h-hhhheecCCceeeeeccCC------------c--
Confidence            34689999999972       234566677777 999999653 2 2333467788888886631            1  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~  208 (787)
                      -+ + +|+                               .++.|+.+|+.+++.-.-..+...|..|..++   .+++.+
T Consensus        67 ~~-~-~G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   67 TI-V-TGG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             eE-E-Eec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc
Confidence            12 2 221                               24789999999998877777888999999885   455556


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp  288 (787)
                      .++.|++||.++-....++.. +.+             ...|.++       ++                          
T Consensus       114 WD~~ik~wD~R~~~~~~~~d~-~kk-------------Vy~~~v~-------g~--------------------------  146 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVVVGTFDQ-GKK-------------VYCMDVS-------GN--------------------------  146 (323)
T ss_pred             cCccEEEEecccccccccccc-Cce-------------EEEEecc-------CC--------------------------
Confidence            788999999886221111110 000             0111110       00                          


Q ss_pred             CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-
Q 003907          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-  367 (787)
Q Consensus       289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a-  367 (787)
                                                                          .+..+..+..|.+||+++.....+.+. 
T Consensus       147 ----------------------------------------------------~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen  147 ----------------------------------------------------RLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             ----------------------------------------------------EEEEeecCceEEEEEcccccchhhhccc
Confidence                                                                011234567899999998765544433 


Q ss_pred             -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEcc
Q 003907          368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSH  441 (787)
Q Consensus       368 -H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSp  441 (787)
                       -.-.+.||++-|++.=.|.+|.+|+ |-|=.+.+...           .++..-.++.+|-...     -.|.+|+|+|
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~-----------~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEE-----------AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecce-EEEEccCCchH-----------HhhhceeEEeeecccCCceEEEEeceeEecc
Confidence             2457899999999888999999998 44433322100           0011112233332111     1589999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          442 YSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      --+.||+|+.||.|.+||+.+.+...
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhh
Confidence            99999999999999999998765443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.21  E-value=1.8e-09  Score=115.72  Aligned_cols=204  Identities=17%  Similarity=0.217  Sum_probs=153.5

Q ss_pred             eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (787)
Q Consensus        98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl  177 (787)
                      ...+.+|.++|.++.+.|+             .+|+|  +|++                               +..-.|
T Consensus        57 ~~tF~~H~~svFavsl~P~-------------~~l~a--TGGg-------------------------------DD~Afl   90 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPN-------------NNLVA--TGGG-------------------------------DDLAFL   90 (399)
T ss_pred             eeehhhcCCceEEEEeCCC-------------CceEE--ecCC-------------------------------CceEEE
Confidence            4567889999999999873             24653  3322                               147889


Q ss_pred             EECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 003907          178 YSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG  253 (787)
Q Consensus       178 Wdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls  253 (787)
                      |+..+|+...++..+ .+|..+.|+.  .+||+| ++++|.||+..|+.....+.. +.               .-+   
T Consensus        91 W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~---------------~di---  151 (399)
T KOG0296|consen   91 WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EV---------------EDI---  151 (399)
T ss_pred             EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-cc---------------Cce---
Confidence            999999999999754 6999999987  688875 578999999999987776651 11               011   


Q ss_pred             cceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC
Q 003907          254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS  333 (787)
Q Consensus       254 pr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~  333 (787)
                       .||-.-..                                                                       
T Consensus       152 -eWl~WHp~-----------------------------------------------------------------------  159 (399)
T KOG0296|consen  152 -EWLKWHPR-----------------------------------------------------------------------  159 (399)
T ss_pred             -EEEEeccc-----------------------------------------------------------------------
Confidence             12222110                                                                       


Q ss_pred             ccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          334 VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       334 ~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                           +-.++.++.||.+.+|.+.++.....|.+|..++++=.|.|+|+.++|+..||+ |++|+.++       |    
T Consensus       160 -----a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~kt-------g----  222 (399)
T KOG0296|consen  160 -----AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKT-------G----  222 (399)
T ss_pred             -----ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCC-------C----
Confidence                 001124568999999999998889999999999999999999999999999776 99999865       4    


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                            ++++++.. .......++.++.++..+..++.++.+++-+...
T Consensus       223 ------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  223 ------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             ------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEcccc
Confidence                  46666642 2234567899999999999999999999866543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=2.1e-09  Score=125.88  Aligned_cols=222  Identities=15%  Similarity=0.191  Sum_probs=151.8

Q ss_pred             EEEEEec-CcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907           77 VLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (787)
Q Consensus        77 vL~lG~~-~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~  155 (787)
                      -|++|.. +.+++|... .++...++-+-.-|++.+.+.             +++.++|. ++|                
T Consensus        68 ~f~~~s~~~tv~~y~fp-s~~~~~iL~Rftlp~r~~~v~-------------g~g~~iaa-gsd----------------  116 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFP-SGEEDTILARFTLPIRDLAVS-------------GSGKMIAA-GSD----------------  116 (933)
T ss_pred             ceEEeeccceEEEeeCC-CCCccceeeeeeccceEEEEe-------------cCCcEEEe-ecC----------------
Confidence            4555555 569999994 466666777777788888876             45557654 222                


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecC
Q 003907          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYP  231 (787)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p  231 (787)
                                      +..|++-++.....+..++.+ .+|..|.++|  ++|||+ .+++|+|||+.++.+.+++..-+
T Consensus       117 ----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~  180 (933)
T KOG1274|consen  117 ----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD  180 (933)
T ss_pred             ----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence                            368999999998888888754 6999999998  688875 57899999999999888886421


Q ss_pred             -CcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907          232 -VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (787)
Q Consensus       232 -~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~  310 (787)
                       .-+               +-.         ..                .+..++.+|.+|.+++               
T Consensus       181 k~n~---------------~~~---------s~----------------i~~~~aW~Pk~g~la~---------------  205 (933)
T KOG1274|consen  181 KDNE---------------FIL---------SR----------------ICTRLAWHPKGGTLAV---------------  205 (933)
T ss_pred             cccc---------------ccc---------cc----------------eeeeeeecCCCCeEEe---------------
Confidence             100               000         00                0011223344444332               


Q ss_pred             eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEE
Q 003907          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H~~pIsaLaFSpdG~lLATaS  388 (787)
                                                        ...++.|++|+..+......++.  |.+.+..++|||+|+|||+++
T Consensus       206 ----------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  206 ----------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             ----------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence                                              24578899999888887777753  445599999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIw  458 (787)
                      .+|. |-|||+.++                  ..++++     ..|++++|-|++.-|-.-...|+.-+|
T Consensus       252 ~~g~-I~vWnv~t~------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  252 LDGQ-ILVWNVDTH------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             cCCc-EEEEecccc------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence            9776 899998542                  112222     248999999988766555555544433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.20  E-value=1.2e-08  Score=113.11  Aligned_cols=276  Identities=14%  Similarity=0.182  Sum_probs=163.8

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeE---eeeecc-CcEEEEEEecCCCCCCCCCCccccCc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE---LVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~e---lls~~d-g~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .|-|.-|.|.-      .+++++++..++.|-.|+... +.+.+   ++.+++ .-|.+|+|+++.           .  
T Consensus       200 ne~v~~a~FHP------td~nliit~Gk~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~eng-----------d--  259 (626)
T KOG2106|consen  200 NEVVFLATFHP------TDPNLIITCGKGHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENG-----------D--  259 (626)
T ss_pred             cceEEEEEecc------CCCcEEEEeCCceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCC-----------C--
Confidence            35566677752      246778888788899999864 33322   455555 458888888652           1  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC-CeEEEEe
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGL  209 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~-~~LaV~~  209 (787)
                      .   +++|.                               .+.|.||+-.+.+..++.. +++.|+++.+-+ ..|+.|.
T Consensus       260 v---iTgDS-------------------------------~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGg  305 (626)
T KOG2106|consen  260 V---ITGDS-------------------------------GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGG  305 (626)
T ss_pred             E---EeecC-------------------------------CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecC
Confidence            2   34542                               3689999998877776665 456899888766 3444455


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcc-eeccccCCCCCcCCCc
Q 003907          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSG-RLSPQNLTPSGVSPST  286 (787)
Q Consensus       210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g-~~s~q~lt~~~~s~s~  286 (787)
                       |.+|..|| .+.+.   +.....|+                +++| |-+|-...+.++-.+- .+...++.        
T Consensus       306 KDRki~~Wd-~~y~k---~r~~elPe----------------~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~--------  357 (626)
T KOG2106|consen  306 KDRKIILWD-DNYRK---LRETELPE----------------QFGPIRTVAEGKGDILVGTTRNFILQGTLE--------  357 (626)
T ss_pred             ccceEEecc-ccccc---cccccCch----------------hcCCeeEEecCCCcEEEeeccceEEEeeec--------
Confidence             45699999 44433   33223332                1222 3333332221110000 00000000        


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                        .+-++++.                  ++..+++    .-....      ......++++|+.|++|+  ..+++-+..
T Consensus       358 --~~f~~~v~------------------gh~delw----gla~hp------s~~q~~T~gqdk~v~lW~--~~k~~wt~~  405 (626)
T KOG2106|consen  358 --NGFTLTVQ------------------GHGDELW----GLATHP------SKNQLLTCGQDKHVRLWN--DHKLEWTKI  405 (626)
T ss_pred             --CCceEEEE------------------eccccee----eEEcCC------ChhheeeccCcceEEEcc--CCceeEEEE
Confidence              00011111                  1111100    000000      001245678999999999  444443322


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                       -..|+.|+.|+|.| .||.+...|+ --|.|++.                  +.+..++.  .+..|..++|||||.+|
T Consensus       406 -~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  406 -IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFL  462 (626)
T ss_pred             -ecCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEE
Confidence             24789999999999 8999998887 56888754                  23444543  35689999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCCccc
Q 003907          447 AIVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       447 As~S~dgTVhIwdl~~~gg~~~  468 (787)
                      |++|.|+.|.||.++..|....
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEEE
Confidence            9999999999999998766543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=5.4e-10  Score=126.63  Aligned_cols=228  Identities=12%  Similarity=0.143  Sum_probs=157.4

Q ss_pred             CeEEEEEe-cCcEEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           75 KQVLLLGY-QNGFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        75 ~~vL~lG~-~~G~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      ++.|+.++ +..++||+....+ -+..++..|+.-|.++++.            +.+++++|.  |+             
T Consensus        85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~------------ak~~~lvaS--gG-------------  137 (735)
T KOG0308|consen   85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI------------AKNNELVAS--GG-------------  137 (735)
T ss_pred             CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec------------ccCceeEEe--cC-------------
Confidence            33455554 4579999997643 5778899999999999874            134456543  31             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeC----------CCcEEEEEecCC--eEEEE-eCCeEEEEE
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRF----------RSSVCMVRCSPR--IVAVG-LATQIYCFD  217 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--~~v~tL~f----------~s~V~sV~~s~~--~LaV~-~~~~I~iwD  217 (787)
                                        -++.|.|||+.++  +.+++..+          ..+||+++.|+.  +++.| .++-|++||
T Consensus       138 ------------------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  138 ------------------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             ------------------CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence                              1378999999988  45555532          247999999995  44443 345599999


Q ss_pred             CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907          218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (787)
Q Consensus       218 ~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~  297 (787)
                      .+|.+.+..|.+|..-               .-++     -...+       |+                          
T Consensus       200 prt~~kimkLrGHTdN---------------Vr~l-----l~~dD-------Gt--------------------------  226 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDN---------------VRVL-----LVNDD-------GT--------------------------  226 (735)
T ss_pred             cccccceeeeeccccc---------------eEEE-----EEcCC-------CC--------------------------
Confidence            9999999989887651               1111     11110       10                          


Q ss_pred             ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF  377 (787)
Q Consensus       298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF  377 (787)
                                                                 ...+++.||+|++||+...++++++..|+..|.++.-
T Consensus       227 -------------------------------------------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~  263 (735)
T KOG0308|consen  227 -------------------------------------------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS  263 (735)
T ss_pred             -------------------------------------------eEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence                                                       1124567999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (787)
Q Consensus       378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI  457 (787)
                      +|+=+.+.+|+.||. |..=|+...              .....+++     ..+.|..+..+.+.+-+-+++.|+.|+-
T Consensus       264 ~~sf~~vYsG~rd~~-i~~Tdl~n~--------------~~~tlick-----~daPv~~l~~~~~~~~~WvtTtds~I~r  323 (735)
T KOG0308|consen  264 SPSFTHVYSGGRDGN-IYRTDLRNP--------------AKSTLICK-----EDAPVLKLHLHEHDNSVWVTTTDSSIKR  323 (735)
T ss_pred             CCCcceEEecCCCCc-EEecccCCc--------------hhheEeec-----CCCchhhhhhccccCCceeeecccccee
Confidence            999999999999776 555566431              00122322     1245777777744444467778889999


Q ss_pred             EeCCCC
Q 003907          458 FVLSPF  463 (787)
Q Consensus       458 wdl~~~  463 (787)
                      |.+.+.
T Consensus       324 W~~~~~  329 (735)
T KOG0308|consen  324 WKLEPD  329 (735)
T ss_pred             cCCccc
Confidence            987654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.19  E-value=2.5e-09  Score=122.06  Aligned_cols=99  Identities=13%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      ..|+||+..+-..+..|..|.-.|+.|+|||||++|+++|. |+++.||..+....   ..          .. +... -
T Consensus       552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~~---~e----------~~-fa~~-k  615 (764)
T KOG1063|consen  552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDIK---DE----------FR-FACL-K  615 (764)
T ss_pred             eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeecccc---hh----------hh-hccc-c
Confidence            57999999988878889999999999999999999999999 56699998753210   00          01 1111 1


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .|...|++++|+||++++|++|.|++|+||.+...
T Consensus       616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            23346999999999999999999999999998754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=2.4e-10  Score=120.53  Aligned_cols=109  Identities=12%  Similarity=0.228  Sum_probs=85.8

Q ss_pred             ccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          340 HAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       340 ~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      ..+.+++.|-.|.|||+. |+.+.++......-...+.||+|++||+++-.- .++||.+--.  .+  |.     =...
T Consensus       200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f~--kd--G~-----fqev  268 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIFT--KD--GT-----FQEV  268 (420)
T ss_pred             eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEec--cC--cc-----hhhh
Confidence            345678889999999998 899999988888888889999999999998744 3899997321  11  21     0112


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+++.|. |+ .+.|..++||++++.+++.|.||+.+|||++
T Consensus       269 ~rvf~Lk-GH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  269 KRVFSLK-GH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhheec-cc-hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            3556664 54 4569999999999999999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.18  E-value=9.3e-10  Score=120.71  Aligned_cols=246  Identities=15%  Similarity=0.126  Sum_probs=150.7

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc---CCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE---DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~---~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .++|....|.     +.+.++++++|...| +-+||+.   +...-..++-.|.+||..|.+.|.-          .+  
T Consensus       186 ~~Rit~l~fH-----Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n----------~s--  248 (498)
T KOG4328|consen  186 DRRITSLAFH-----PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN----------TS--  248 (498)
T ss_pred             ccceEEEEec-----ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC----------hh--
Confidence            3456666665     445678999999988 9999993   3222234567889999999999852          22  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE--EEEEeCCC-cEEEEEecC---CeE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY--EHVLRFRS-SVCMVRCSP---RIV  205 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~--v~tL~f~s-~V~sV~~s~---~~L  205 (787)
                      .+...+                                 +++++|+-|++++..  +.+++-.. -.++.+++.   .+|
T Consensus       249 ~i~ssS---------------------------------yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl  295 (498)
T KOG4328|consen  249 QIYSSS---------------------------------YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL  295 (498)
T ss_pred             heeeec---------------------------------cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE
Confidence            222211                                 347899999987643  33332122 345556644   344


Q ss_pred             EEEeCCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGLATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~~~~I~iwD~~T~e~l-~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      ++..-+...+||.++.... ..++-|...             .+.+++.|                              
T Consensus       296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kK-------------I~sv~~NP------------------------------  332 (498)
T KOG4328|consen  296 FGDNVGNFNVIDLRTDGSEYENLRLHKKK-------------ITSVALNP------------------------------  332 (498)
T ss_pred             EeecccceEEEEeecCCccchhhhhhhcc-------------cceeecCC------------------------------
Confidence            4444457888998776531 112222221             23344433                              


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE---
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---  361 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~---  361 (787)
                                                                       ...   -.+++++.|++++|||++....   
T Consensus       333 -------------------------------------------------~~p---~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  333 -------------------------------------------------VCP---WFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             -------------------------------------------------CCc---hheeecccCcceeeeehhhhcCCCC
Confidence                                                             000   0123456788999999976432   


Q ss_pred             -EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe----cccccccEEE
Q 003907          362 -ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH----RGITSATIQD  436 (787)
Q Consensus       362 -v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~----rG~~~a~I~s  436 (787)
                       .-....|..+|++..|||+|-.|+|.+.|.. |||||..--      +.       ....+....    .|.+ -.+..
T Consensus       361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~------sa-------~~~p~~~I~Hn~~t~Rw-lT~fK  425 (498)
T KOG4328|consen  361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI------SA-------KDEPLGTIPHNNRTGRW-LTPFK  425 (498)
T ss_pred             cceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc------cc-------cCCccceeeccCccccc-ccchh
Confidence             2334589999999999998777999999665 999997310      00       001121221    1111 12456


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          437 ICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       437 laFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+|.||-.+|+++-.-..|-|||-+
T Consensus       426 A~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  426 AAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             heeCCCccEEEEeccCcceeEEcCC
Confidence            7899999999999998889998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.15  E-value=3.9e-10  Score=124.37  Aligned_cols=227  Identities=20%  Similarity=0.225  Sum_probs=138.5

Q ss_pred             EEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec
Q 003907          186 EHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS  261 (787)
Q Consensus       186 v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas  261 (787)
                      +.+|.+-.-|+++.++.  +.+-+|..+.|+|||+..-....     |..++.+.  ...|+ ...+-|.|  |.|-.++
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~-----PvsqLdcl--~rdny-iRSckL~pdgrtLivGG  484 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS-----PVSQLDCL--NRDNY-IRSCKLLPDGRTLIVGG  484 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC-----cccccccc--Ccccc-eeeeEecCCCceEEecc
Confidence            45555666789999877  78888999999999987543211     11111110  01111 34566666  6676666


Q ss_pred             CCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccc
Q 003907          262 NTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH  340 (787)
Q Consensus       262 ~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~  340 (787)
                      ...     ....|+...| +.+-.                       .    |..      ..-...++..+++.+.-  
T Consensus       485 eas-----tlsiWDLAapTprika-----------------------e----lts------sapaCyALa~spDakvc--  524 (705)
T KOG0639|consen  485 EAS-----TLSIWDLAAPTPRIKA-----------------------E----LTS------SAPACYALAISPDAKVC--  524 (705)
T ss_pred             ccc-----eeeeeeccCCCcchhh-----------------------h----cCC------cchhhhhhhcCCcccee--
Confidence            521     1123554443 11100                       0    000      00011223333333322  


Q ss_pred             cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc----------cCCCCC
Q 003907          341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------RSGSGN  410 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~----------~~~~g~  410 (787)
                        .....||.|.|||+.+...+.+|++|++.+.||.+++||+.|-|++-|. ++|-||++....          .+..-+
T Consensus       525 --FsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSLg~c  601 (705)
T KOG0639|consen  525 --FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSLGYC  601 (705)
T ss_pred             --eeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheecccC
Confidence              2456899999999999999999999999999999999999999999954 599999865210          011111


Q ss_pred             CccccCC-------------cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          411 HKYDWNS-------------SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       411 ~~~~~~~-------------s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      ..-+|-.             +....|.+  +.+...|.++.|++-|+|+++.+.|.-+..|.. +||..
T Consensus       602 P~~dWlavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGas  667 (705)
T KOG0639|consen  602 PTGDWLAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGAS  667 (705)
T ss_pred             CCccceeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC-ccccc
Confidence            1112211             11122333  234456999999999999999999999999984 55543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.15  E-value=5.2e-08  Score=106.53  Aligned_cols=105  Identities=11%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             CCCceEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          346 DNAGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       346 ~~dG~V~IwDl~s--~--~~v~~~~aH------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      ..++.|.+||+..  +  +.+..+..+      ......+.|+|+|++|+++...+..|.||++...      +.     
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~-----  262 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS-----  262 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-----
Confidence            3479999999973  2  234444322      1123468999999999998776678999998531      10     


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCc
Q 003907          416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD  466 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~  466 (787)
                        ....+.....|   .....++|+|||++|+++.. +++|.||+++...+.
T Consensus       263 --~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~  309 (330)
T PRK11028        263 --VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL  309 (330)
T ss_pred             --eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence              00111222222   12457899999999998885 899999999765443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=4e-09  Score=118.72  Aligned_cols=261  Identities=18%  Similarity=0.174  Sum_probs=145.1

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEEEeCCeEEEEECCCCcee---------EEEEecCCccc---
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENK---------FSVLTYPVPQL---  235 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV~~~~~I~iwD~~T~e~l---------~tl~t~p~p~~---  235 (787)
                      +++||||.+.||.++.+..|.+.|.+|+|+|    -+|||+.+..+.|-|..-|..+         .+....+.|.+   
T Consensus       421 DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~  500 (733)
T KOG0650|consen  421 DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV  500 (733)
T ss_pred             CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccce
Confidence            4799999999999999999999999999998    4888888888777665444221         11111111100   


Q ss_pred             --CC----CCccccc------cccceeEEcc--ceEEEec----CCceecCc--ceeccccCC---CCCcCCCcCCCCCc
Q 003907          236 --AG----QGAVGIN------VGYGPMAVGP--RWLAYAS----NTLLLSNS--GRLSPQNLT---PSGVSPSTSPGGSS  292 (787)
Q Consensus       236 --~~----~~~~~~~------~~~~~lAlsp--r~LAyas----~~~~l~~~--g~~s~q~lt---~~~~s~s~sp~~g~  292 (787)
                        ..    +...++.      -....+.+..  +|||..-    +..++.+.  .+.+...+.   +......|.|..-.
T Consensus       501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence              00    0000000      0112233322  6787742    12222221  111111111   01122234444443


Q ss_pred             eeEeeeh-----hhhhhhhcccceeecccccccCCCC-CCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907          293 LVARYAM-----EHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF  365 (787)
Q Consensus       293 lva~~a~-----d~sk~la~G~~ktls~~~~~l~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~  365 (787)
                      +++.-++     |.+++.+   .|+|       .++. ..+.++..+    ++-.+.-++.++.+..+|+.-. ++..++
T Consensus       581 lfVaTq~~vRiYdL~kqel---vKkL-------~tg~kwiS~msihp----~GDnli~gs~d~k~~WfDldlsskPyk~l  646 (733)
T KOG0650|consen  581 LFVATQRSVRIYDLSKQEL---VKKL-------LTGSKWISSMSIHP----NGDNLILGSYDKKMCWFDLDLSSKPYKTL  646 (733)
T ss_pred             EEEEeccceEEEehhHHHH---HHHH-------hcCCeeeeeeeecC----CCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence            3321111     1111111   0111       1111 111122222    1112345678999999998743 577889


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc--CCcceEEEEEeccccc---ccEEEEEEc
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW--NSSHVHLYKLHRGITS---ATIQDICFS  440 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~--~~s~~~l~~l~rG~~~---a~I~slaFS  440 (787)
                      +-|...|.+++|++.=.++|+||.||+ +.||--+-          ..|+  .+-..++..|+ |+..   --|.++.|+
T Consensus       647 r~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~V----------Y~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~wH  714 (733)
T KOG0650|consen  647 RLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMV----------YNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIWH  714 (733)
T ss_pred             hhhhhhhhhhhhccccceeeeecCCCc-EEEEeeee----------ehhhhcCCceEeeeecc-CceeecccceEeeccc
Confidence            999999999999999999999999887 66774221          1111  12224555554 4321   138899999


Q ss_pred             cCCCEEEEEeCCCeEEEE
Q 003907          441 HYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIw  458 (787)
                      |.--||.+++.||||++|
T Consensus       715 P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCCceEEecCCCceEEee
Confidence            999999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=7.1e-09  Score=113.97  Aligned_cols=94  Identities=17%  Similarity=0.339  Sum_probs=68.9

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-  425 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-  425 (787)
                      ..|.|.|....+++.+..|+- .+.|+.++|+.||+.|..++.+| .|.|||+...                 .+++++ 
T Consensus       323 ~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~-----------------~~~~rf~  383 (514)
T KOG2055|consen  323 NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTG-EVYVWNLRQN-----------------SCLHRFV  383 (514)
T ss_pred             cCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCc-eEEEEecCCc-----------------ceEEEEe
Confidence            345555555566666666653 36789999999999998888878 4999999531                 233333 


Q ss_pred             -ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          426 -HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       426 -~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       ..+.+   =+++|.|++|+|||+||+.|.|.|||.+.
T Consensus       384 D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  384 DDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ecCccc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence             22222   26788999999999999999999999765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=2.2e-08  Score=114.37  Aligned_cols=248  Identities=13%  Similarity=0.122  Sum_probs=164.6

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      +.+.+-|.+.|+  +        .++++.+|..+-+.-||+.+ .+-...+....|++..+++.|.             .
T Consensus        67 ~~drsIE~L~W~--e--------~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~-------------~  122 (691)
T KOG2048|consen   67 PEDRSIESLAWA--E--------GGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPE-------------N  122 (691)
T ss_pred             CCCCceeeEEEc--c--------CCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCc-------------c
Confidence            344466778888  2        36788888888899999965 4444455566789999998863             1


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecCC--eE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IV  205 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f---~s~V~sV~~s~~--~L  205 (787)
                      ..++ |+||+                                +.+.+.+...++......|   .++|++|.+++.  .|
T Consensus       123 ~~l~-Igcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i  169 (691)
T KOG2048|consen  123 TILA-IGCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI  169 (691)
T ss_pred             ceEE-eecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence            2455 45553                                3566666666665554444   379999999993  36


Q ss_pred             EEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      |.|..+ .|+|||+.+++.++.+.-.-.    +...     +-..+.++-   .|-.                       
T Consensus       170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~l~k-----~~~~iVWSv---~~Lr-----------------------  214 (691)
T KOG2048|consen  170 AGGSIDGVIRIWDVKSGQTLHIITMQLD----RLSK-----REPTIVWSV---LFLR-----------------------  214 (691)
T ss_pred             EecccCceEEEEEcCCCceEEEeeeccc----cccc-----CCceEEEEE---EEee-----------------------
Confidence            776655 599999999987773321000    0000     000111110   0000                       


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                                     |                                       .++++++..|+|++||...++++..
T Consensus       215 ---------------d---------------------------------------~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  215 ---------------D---------------------------------------STIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             ---------------c---------------------------------------CcEEEecCCceEEEEcccCcchhhh
Confidence                           0                                       1234667889999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (787)
                      +..|...|.||+-++++.++.+|+.|+++|++... +.      +.        .+.. ..+|-.+...|.+++..++  
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~~--------~wv~-~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------KS--------EWVI-NSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------cc--------ceee-eccccCCcccceeeeeecc--
Confidence            99999999999999999999999999987766554 21      10        0112 2233334456999999888  


Q ss_pred             EEEEEeCCCeEEEEeCCC
Q 003907          445 WIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       445 ~LAs~S~dgTVhIwdl~~  462 (787)
                      .|.+|+.|.++.+=....
T Consensus       303 ~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eEEecceeeEEEEccccc
Confidence            899999999888755443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=2.9e-09  Score=117.12  Aligned_cols=244  Identities=10%  Similarity=0.047  Sum_probs=145.8

Q ss_pred             CEEEEEECCCCeEEE-EEeCCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~-tL~f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ..|.+|.+......+ .+..+++|.++..++  .+|+.+ -.++||||.+.||+++..+..|-.+             ..
T Consensus        61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------IT  127 (476)
T KOG0646|consen   61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------IT  127 (476)
T ss_pred             ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------ee
Confidence            378999997766555 445788999999987  566666 5788999999999998888665432             12


Q ss_pred             eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCC-ceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS-SLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g-~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                      .+-++-  .++-+++.+..+     ..|+...-      .++.+. .....              ..|+.+....+    
T Consensus       128 cL~fs~dgs~iiTgskDg~V-----~vW~l~~l------v~a~~~~~~~p~--------------~~f~~HtlsIT----  178 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAV-----LVWLLTDL------VSADNDHSVKPL--------------HIFSDHTLSIT----  178 (476)
T ss_pred             EEEEeCCCcEEEecCCCccE-----EEEEEEee------cccccCCCccce--------------eeeccCcceeE----
Confidence            333332  555566555311     12322110      000000 00000              11221111100    


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-  404 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-  404 (787)
                        .+...+++ . ...+.+++.|.++++||+..+.++.++. -..+|.|++.+|-++.+..|+.+|. |-+.++..... 
T Consensus       179 --Dl~ig~Gg-~-~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~  252 (476)
T KOG0646|consen  179 --DLQIGSGG-T-NARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQ  252 (476)
T ss_pred             --EEEecCCC-c-cceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcc
Confidence              00000000 0 0123467899999999999998888764 3578999999999999999999886 67766632210 


Q ss_pred             cCCCCCCccccCCcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          405 RSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      +.+......+  ........+. |+.. ..|+|++.|-||..|++|+.||+|.|||+.......
T Consensus       253 ~~~v~~k~~~--~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  253 SAGVNQKGRH--EENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR  313 (476)
T ss_pred             cccccccccc--cccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence            0000000000  1112333343 3333 479999999999999999999999999997654433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=4e-08  Score=111.94  Aligned_cols=78  Identities=17%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      ...+|+|||++|+.++. +. +.+||+..       |           ....+..+.   ...+++|+|||++|+.++.+
T Consensus       336 ~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g-----------~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        336 YSAQISADGKTLVMING-DN-VVKQDLTS-------G-----------STEVLSSTF---LDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C-----------CeEEecCCC---CCCCceECCCCCEEEEEEcC
Confidence            45789999999998887 44 55689853       2           111222111   23568899999999999999


Q ss_pred             CeEEEEeCCCCCC--cccccccc
Q 003907          453 GTCHVFVLSPFGG--DSGFQTLS  473 (787)
Q Consensus       453 gTVhIwdl~~~gg--~~~~~~H~  473 (787)
                      +.+.+|.+....|  ...+..|.
T Consensus       393 g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             CCceEEEEEECCCCceEEccCCC
Confidence            9999888743322  23444454

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.07  E-value=3.8e-09  Score=112.14  Aligned_cols=101  Identities=18%  Similarity=0.265  Sum_probs=85.4

Q ss_pred             cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      ++.-|.|+|.|+.+++....+.+|...|+.|.|.|+. ++|++||. |+.||+|+++..                 .++.
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~  172 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVA  172 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEE
Confidence            3467899999999999999999999999999999964 68889998 778999999752                 4565


Q ss_pred             EEec-ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          424 KLHR-GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       424 ~l~r-G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+-. +-|...|.++.|++||.+||+++.|.++++|+++..
T Consensus       173 VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            5521 114467999999999999999999999999999843

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=7.9e-09  Score=113.79  Aligned_cols=197  Identities=17%  Similarity=0.208  Sum_probs=129.1

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      ..+..|+.|+-.| +-+|.+ .+|++..+++.|=-+|.++++.-+           ++  ++.  +++.           
T Consensus        91 n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~d-----------gs--~ii--Tgsk-----------  143 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDD-----------GS--HII--TGSK-----------  143 (476)
T ss_pred             CCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCC-----------Cc--EEE--ecCC-----------
Confidence            3578888885555 999999 468898899999899999998743           22  442  3321           


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECC---------CCeEEEEEeCCC-cEEEEEecC-----CeEEEEeCCeEEEE
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---------SHCYEHVLRFRS-SVCMVRCSP-----RIVAVGLATQIYCF  216 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk---------tg~~v~tL~f~s-~V~sV~~s~-----~~LaV~~~~~I~iw  216 (787)
                                          ++.|.+|++-         +-+.++.+..|. +|.++.+..     +++.++.|..|+||
T Consensus       144 --------------------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  144 --------------------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW  203 (476)
T ss_pred             --------------------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence                                3568888652         223455554444 788887643     56667888899999


Q ss_pred             ECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecC-CceecCcceeccccCCCCCcCCCcCCCCCcee
Q 003907          217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV  294 (787)
Q Consensus       217 D~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~-~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lv  294 (787)
                      |+..+.++.++.. |.+             ...+++.| ....|.|. ...      + ++.+-                
T Consensus       204 dlS~g~LLlti~f-p~s-------------i~av~lDpae~~~yiGt~~G~------I-~~~~~----------------  246 (476)
T KOG0646|consen  204 DLSLGVLLLTITF-PSS-------------IKAVALDPAERVVYIGTEEGK------I-FQNLL----------------  246 (476)
T ss_pred             EeccceeeEEEec-CCc-------------ceeEEEcccccEEEecCCcce------E-Eeeeh----------------
Confidence            9999999888875 221             35688888 34445443 211      1 11000                


Q ss_pred             EeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC--Ce
Q 003907          295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PI  372 (787)
Q Consensus       295 a~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~--pI  372 (787)
                                      -+        +++           .          ..+=..+.++. .+..+..+.+|..  +|
T Consensus       247 ----------------~~--------~~~-----------~----------~~~v~~k~~~~-~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  247 ----------------FK--------LSG-----------Q----------SAGVNQKGRHE-ENTQINVLVGHENESAI  280 (476)
T ss_pred             ----------------hc--------CCc-----------c----------ccccccccccc-ccceeeeeccccCCcce
Confidence                            00        000           0          00000222222 2455677889988  99


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      +||+.+-||++|++|+.||+ +.|||+.
T Consensus       281 TcLais~DgtlLlSGd~dg~-VcvWdi~  307 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGDEDGK-VCVWDIY  307 (476)
T ss_pred             eEEEEecCccEEEeeCCCCC-EEEEecc
Confidence            99999999999999999887 8999984

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.06  E-value=3.6e-09  Score=116.18  Aligned_cols=100  Identities=23%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             CCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          346 DNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +.=|...+||++++.. ...++-|...|..|+|+|- -.+|||||.|++ .+|||++..     .+.      .+ --++
T Consensus       298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K------~s-p~ls  364 (498)
T KOG4328|consen  298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK------AS-PFLS  364 (498)
T ss_pred             ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC------CC-ccee
Confidence            3446888999988654 7778889999999999994 568999999775 899999642     121      11 0233


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+   .|...|.+..|||+|--|++.+.|.+|+|||..
T Consensus       365 t~---~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TL---PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cc---cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            33   234469999999998889999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.06  E-value=1.9e-08  Score=114.95  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=70.2

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ..+..|+.+|+.++++|+.. ++.|||||+..       |.        ..+.++-.+++. +....+...|.|.|||++
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s-------gK--------q~k~FKgs~~~e-G~lIKv~lDPSgiY~atS  659 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES-------GK--------QVKSFKGSRDHE-GDLIKVILDPSGIYLATS  659 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEec-ccceEEEeccc-------cc--------eeeeecccccCC-CceEEEEECCCccEEEEe
Confidence            46889999999999999999 56699999964       31        122333233322 346668999999999999


Q ss_pred             eCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907          450 SSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (787)
Q Consensus       450 S~dgTVhIwdl~~~gg~~~~~~H~~~~~~  478 (787)
                      ..|.|+-+||....++.....+|..-+.+
T Consensus       660 csdktl~~~Df~sgEcvA~m~GHsE~VTG  688 (1080)
T KOG1408|consen  660 CSDKTLCFVDFVSGECVAQMTGHSEAVTG  688 (1080)
T ss_pred             ecCCceEEEEeccchhhhhhcCcchheee
Confidence            99999999999887777777888655443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.06  E-value=4.2e-07  Score=96.26  Aligned_cols=179  Identities=22%  Similarity=0.293  Sum_probs=125.4

Q ss_pred             CCEEEEEECCC-CeEEEEEeCC-CcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          172 PTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       172 p~tVrlWdlkt-g~~v~tL~f~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      ++++++||... ...+..+..+ ..|..+.+.+  +.++++.  +..+++|++.+.+.+..+..|..+            
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  200 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------  200 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence            36899999998 7777777765 5888899988  4566654  678999999986666666543221            


Q ss_pred             ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                       ...+++       ....                           ..                                 
T Consensus       201 -v~~~~~-------~~~~---------------------------~~---------------------------------  212 (466)
T COG2319         201 -VSSLAF-------SPDG---------------------------GL---------------------------------  212 (466)
T ss_pred             -eEEEEE-------cCCc---------------------------ce---------------------------------
Confidence             111222       1110                           00                                 


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM  404 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~  404 (787)
                                     ....+..++.|++||...+..+. .+..|.... ...|+|++.++++++.++. +++|++...  
T Consensus       213 ---------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~--  273 (466)
T COG2319         213 ---------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS--  273 (466)
T ss_pred             ---------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence                           00112468889999999888888 689998885 4489999999998888665 999998542  


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                          .          ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.....
T Consensus       274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence                1          123333 232 45799999999999999999999999998776543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.03  E-value=1.4e-08  Score=107.90  Aligned_cols=100  Identities=21%  Similarity=0.311  Sum_probs=75.9

Q ss_pred             EEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907           77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (787)
Q Consensus        77 vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~  155 (787)
                      +|++|..-| |+|.|+. .+++..-+-.|.+.|..+++.|.             +|-|++ ++.                
T Consensus       107 ~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlvl-s~S----------------  155 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLVL-SAS----------------  155 (385)
T ss_pred             eEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEEE-Eec----------------
Confidence            455544445 8999995 47788888899999999998763             444544 321                


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEecC--CeEEE-EeCCeEEEEECCCCc
Q 003907          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLE  222 (787)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~----f~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e  222 (787)
                                     .+..||+||.++..++..+-    ++..|++|+++.  ++|+. |.|.+|++|++.+-+
T Consensus       156 ---------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  156 ---------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             ---------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence                           24689999999999999985    457999999987  45654 678899999988544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=4.4e-08  Score=111.94  Aligned_cols=189  Identities=19%  Similarity=0.245  Sum_probs=125.3

Q ss_pred             CEEEEEECCCCeE-EEEEeC--CCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCY-EHVLRF--RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~-v~tL~f--~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      +.|.||++..+=+ ..++..  .+.|-+++|..  +++.+++.+.|.-||+.+++.++.+.....+             .
T Consensus        47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~-------------I  113 (691)
T KOG2048|consen   47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA-------------I  113 (691)
T ss_pred             CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc-------------e
Confidence            5799999987532 233333  35899999984  6777788999999999999987776532221             2


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                      ..+|+.|       .                           +..                                   
T Consensus       114 Wsiai~p-------~---------------------------~~~-----------------------------------  124 (691)
T KOG2048|consen  114 WSIAINP-------E---------------------------NTI-----------------------------------  124 (691)
T ss_pred             eEEEeCC-------c---------------------------cce-----------------------------------
Confidence            3344432       0                           000                                   


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR  405 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v--~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~  405 (787)
                                    .+-+..||.+..++...++..  ..|...++.|.+|+|+|+|+.||+|+.|| .||+||+..    
T Consensus       125 --------------l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~----  185 (691)
T KOG2048|consen  125 --------------LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS----  185 (691)
T ss_pred             --------------EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC----
Confidence                          011235665555565555432  23445578999999999999999999966 599999864    


Q ss_pred             CCCCCCccccCCcceE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          406 SGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~-----l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                         |.        ..+     +-.+.++ ...-|+++.|=.|+ .|++|.+.|||.+||-....-...+..|...
T Consensus       186 ---~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  186 ---GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDAD  247 (691)
T ss_pred             ---Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence               21        022     1222222 22358999998887 5899999999999998765555556666544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=4.2e-09  Score=108.09  Aligned_cols=100  Identities=19%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             cCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCC---C-----------CEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          345 MDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPS---G-----------TLLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpd---G-----------~lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                      ++.||.|.|.++.+.   ..-....+|+-.|+++++.|-   |           +.||||+. |+.|+||+...      
T Consensus       122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc-Dn~VkiW~~~~------  194 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC-DNLVKIWKFDS------  194 (299)
T ss_pred             eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC-ccceeeeecCC------
Confidence            456777777776654   123345789999999999996   6           67999999 56799999743      


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCC
Q 003907          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~  462 (787)
                       +.         ..+-...+| |...|.++||.|.-    .+||++|.||+|.||....
T Consensus       195 -~~---------w~~e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  195 -DS---------WKLERTLEG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             -cc---------hhhhhhhhh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             10         222222244 34579999999974    5799999999999998874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.97  E-value=4.3e-08  Score=102.70  Aligned_cols=246  Identities=15%  Similarity=0.201  Sum_probs=150.7

Q ss_pred             CCeEEEEEec--------CcEEEEEccCCCce-----eEeeee----ccCcEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 003907           74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV  136 (787)
Q Consensus        74 ~~~vL~lG~~--------~G~qVWdv~~~~~~-----~ells~----~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV  136 (787)
                      ++++|++.|.        .+.-||.+...-+-     .|.+..    +-|.|.||++-|+.          .+  +..+ 
T Consensus        75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----------~k--lasm-  141 (370)
T KOG1007|consen   75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----------DK--LASM-  141 (370)
T ss_pred             CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----------Ce--eEEe-
Confidence            5789999988        35789999553222     233333    33789999999852          12  4322 


Q ss_pred             EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC------CcEEEEEecC----CeE
Q 003907          137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR------SSVCMVRCSP----RIV  205 (787)
Q Consensus       137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~------s~V~sV~~s~----~~L  205 (787)
                      .                                  .+.|.||++..+.. +.++.-+      ..-.+=+++|    +.+
T Consensus       142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            1                                  25799999987765 5555322      2345556777    688


Q ss_pred             EEEeCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~~~~I~iwD~~T~e~l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      ++..+.++.+||++|+++...|.. |-..             +..+.+.|       +.                     
T Consensus       188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~-------------vrdlDfNp-------nk---------------------  226 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQR-------------VRDLDFNP-------NK---------------------  226 (370)
T ss_pred             EEeCCCcEEEEEccchhhhcchhhhhcce-------------eeeccCCC-------Cc---------------------
Confidence            999899999999999987776653 2110             01111111       00                     


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIIS  363 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~  363 (787)
                                                                         .   -.+++++.||.|+|||.+. ..++.
T Consensus       227 ---------------------------------------------------q---~~lvt~gDdgyvriWD~R~tk~pv~  252 (370)
T KOG1007|consen  227 ---------------------------------------------------Q---HILVTCGDDGYVRIWDTRKTKFPVQ  252 (370)
T ss_pred             ---------------------------------------------------e---EEEEEcCCCccEEEEeccCCCcccc
Confidence                                                               0   0123556789999999976 45889


Q ss_pred             EeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccC--CCCCCcccc--CCcceEEEEEecc------cccc
Q 003907          364 QFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRS--GSGNHKYDW--NSSHVHLYKLHRG------ITSA  432 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~--~~g~~~~~~--~~s~~~l~~l~rG------~~~a  432 (787)
                      .+.+|...|.++.|+|. ..+++|++.|- .+.+|....-.+..  ..+....+.  ..+.++..-|.-|      .+-.
T Consensus       253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs-~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED  331 (370)
T KOG1007|consen  253 ELPGHSHWVWAVRFNPEHDQLILSGGSDS-AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED  331 (370)
T ss_pred             ccCCCceEEEEEEecCccceEEEecCCCc-eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence            99999999999999994 67888998855 58888753210000  000000000  0001111111111      1234


Q ss_pred             cEEEEEEccCCCE-EEEEeCCCeEEEEeCCC
Q 003907          433 TIQDICFSHYSQW-IAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       433 ~I~slaFSpDg~~-LAs~S~dgTVhIwdl~~  462 (787)
                      .|++++||.-.-| +|+-|.||.+.|=.+.+
T Consensus       332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  332 SVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            6999999976666 46668899998866654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.95  E-value=1.3e-08  Score=105.47  Aligned_cols=69  Identities=23%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      |+.+.+-||++.||||+.|++ ||||..++       .          .++..|.-  |.+.|.+++|+||...+|++|.
T Consensus       254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLky--Hsagvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLKY--HSAGVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence            445557788999999999776 89998754       2          35555532  4467999999999999999999


Q ss_pred             CCeEEEEeC
Q 003907          452 KGTCHVFVL  460 (787)
Q Consensus       452 dgTVhIwdl  460 (787)
                      |++|-+|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=4.9e-07  Score=103.23  Aligned_cols=212  Identities=17%  Similarity=0.112  Sum_probs=125.0

Q ss_pred             EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (787)
Q Consensus        86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (787)
                      +.|||.+ ..+.+. +..+.+++....+.|+.           +  .||.+.-+.                         
T Consensus       181 l~~~d~d-g~~~~~-lt~~~~~~~~p~wSPDG-----------~--~la~~s~~~-------------------------  220 (429)
T PRK03629        181 LRVSDYD-GYNQFV-VHRSPQPLMSPAWSPDG-----------S--KLAYVTFES-------------------------  220 (429)
T ss_pred             EEEEcCC-CCCCEE-eecCCCceeeeEEcCCC-----------C--EEEEEEecC-------------------------
Confidence            6667764 233333 44456789999999862           2  556544211                         


Q ss_pred             CCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907          166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG  239 (787)
Q Consensus       166 ~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e~l~tl~t~p~p~~~~~~  239 (787)
                           ....|.+||+.+|+......+...+.+++++|  +.|+....    .+|++||+.+++. ..+......      
T Consensus       221 -----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~------  288 (429)
T PRK03629        221 -----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN------  288 (429)
T ss_pred             -----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCC------
Confidence                 01479999999987655555666667788888  56775432    2599999988764 223221110      


Q ss_pred             ccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907          240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC  317 (787)
Q Consensus       240 ~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~  317 (787)
                             ....+++|  ++|+|..+..                                                     
T Consensus       289 -------~~~~~wSPDG~~I~f~s~~~-----------------------------------------------------  308 (429)
T PRK03629        289 -------NTEPTWFPDSQNLAYTSDQA-----------------------------------------------------  308 (429)
T ss_pred             -------cCceEECCCCCEEEEEeCCC-----------------------------------------------------
Confidence                   12345555  4555543210                                                     


Q ss_pred             cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 003907          318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN  395 (787)
Q Consensus       318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~Ir  395 (787)
                                                   ..-.|.++|+.+++. ..+..+.......+|+|||++|+..+.++  ..|.
T Consensus       309 -----------------------------g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~  358 (429)
T PRK03629        309 -----------------------------GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  358 (429)
T ss_pred             -----------------------------CCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence                                         001233445555433 23333344556789999999998877543  3477


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCe---EEEEeC
Q 003907          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVL  460 (787)
Q Consensus       396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgT---VhIwdl  460 (787)
                      +||+..       +           ....+..+   ....+.+|||||++|+.++.++.   +.++++
T Consensus       359 ~~dl~~-------g-----------~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        359 KQDLAT-------G-----------GVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             EEECCC-------C-----------CeEEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            788743       2           12233222   12346889999999999998875   455555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=7.5e-07  Score=101.70  Aligned_cols=204  Identities=15%  Similarity=0.151  Sum_probs=122.7

Q ss_pred             EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (787)
Q Consensus        86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (787)
                      +.+||.  .+.-.+.+..+.++|....+.|+.           +  .|+.+....                         
T Consensus       184 l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG-----------~--~lay~s~~~-------------------------  223 (435)
T PRK05137        184 LAIMDQ--DGANVRYLTDGSSLVLTPRFSPNR-----------Q--EITYMSYAN-------------------------  223 (435)
T ss_pred             EEEECC--CCCCcEEEecCCCCeEeeEECCCC-----------C--EEEEEEecC-------------------------
Confidence            445554  344445566777899999999862           2  555544211                         


Q ss_pred             CCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907          166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG  239 (787)
Q Consensus       166 ~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e~l~tl~t~p~p~~~~~~  239 (787)
                           ....|.+||+.+|+......+...+.+.++++  +.|++...    ..|++||+.+++. ..|..++..      
T Consensus       224 -----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~------  291 (435)
T PRK05137        224 -----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAI------  291 (435)
T ss_pred             -----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCc------
Confidence                 01479999999988754445677788888987  56665432    3599999988764 333322210      


Q ss_pred             ccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907          240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC  317 (787)
Q Consensus       240 ~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~  317 (787)
                             ....+++|  ++|+|.++.                                                      
T Consensus       292 -------~~~~~~spDG~~i~f~s~~------------------------------------------------------  310 (435)
T PRK05137        292 -------DTSPSYSPDGSQIVFESDR------------------------------------------------------  310 (435)
T ss_pred             -------cCceeEcCCCCEEEEEECC------------------------------------------------------
Confidence                   11234444  445443311                                                      


Q ss_pred             cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 003907          318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN  395 (787)
Q Consensus       318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~Ir  395 (787)
                                                  .....|.++|+.+++. ..+..+...+...+|+|||++||..+.++  ..|.
T Consensus       311 ----------------------------~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~  361 (435)
T PRK05137        311 ----------------------------SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG  361 (435)
T ss_pred             ----------------------------CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence                                        0012466777765543 33433445567789999999999877543  3466


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      +||+..       +           ....+..+   ..+.+.+|||||++|+..+.+
T Consensus       362 ~~d~~~-------~-----------~~~~lt~~---~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        362 VMKPDG-------S-----------GERILTSG---FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EEECCC-------C-----------ceEeccCC---CCCCCCeECCCCCEEEEEEcc
Confidence            777632       1           11223222   236789999999999887654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=2.5e-08  Score=106.50  Aligned_cols=187  Identities=17%  Similarity=0.195  Sum_probs=124.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-cEEEEEe----cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRC----SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~----s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      +.|++||..+++.+..++.+. .+-.|+|    ++..|.+ +.++.|++||+++......+.....|     +.     .
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~~-----~  119 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----GT-----P  119 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----CC-----c
Confidence            589999999999999998653 4555555    3455555 55779999999988766655532211     00     0


Q ss_pred             cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      +..++.+.  +.+|.+...                                                             
T Consensus       120 f~~ld~nck~~ii~~GtE~-------------------------------------------------------------  138 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTEL-------------------------------------------------------------  138 (376)
T ss_pred             ceEeeccCcCCeEEecccc-------------------------------------------------------------
Confidence            22233321  122221100                                                             


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~-~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~  401 (787)
                                          ...+-.|.+||++..+. +.. +..|...|++|+|+| +-.+|+|||.|| .|+|||+.-
T Consensus       139 --------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~  197 (376)
T KOG1188|consen  139 --------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKK  197 (376)
T ss_pred             --------------------ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCC
Confidence                                12345789999988654 444 468999999999999 467999999977 699999953


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      ....             -..+..+.   +...|-.+.|..++ +.|.+-+..+|..+|+++....+.
T Consensus       198 d~Ee-------------DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  198 DNEE-------------DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             Ccch-------------hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            2100             01222332   22458999999988 558999999999999999866443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.92  E-value=4e-09  Score=122.16  Aligned_cols=279  Identities=17%  Similarity=0.195  Sum_probs=174.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .-+|..-|++|-||+       .+..++.||++- ++||..+ ++.+...+.+|.|.++-+++.             .++
T Consensus       186 LlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs-------------~~n  244 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVS-------------SNN  244 (1113)
T ss_pred             HHhhhhheeeeeecc-------ccceEeecCccceeeeeecc-chhhhccCCCCccccchhccc-------------hhh
Confidence            567888999999997       367899999986 8999975 466777788899999988865             222


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL  209 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~  209 (787)
                      -++|..+                                 .+..|++|-+.++..|..|..+ +.|.+|+|+|+. +.+.
T Consensus       245 ~~iaaaS---------------------------------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~  290 (1113)
T KOG0644|consen  245 TMIAAAS---------------------------------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSD  290 (1113)
T ss_pred             hhhhhcc---------------------------------cCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCC
Confidence            2333211                                 2478999999999999999765 699999999976 5566


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~  289 (787)
                      ++++.+||+. ++.   +...|.|-.    +.+.. -...+-+-..|-++.+..        .                 
T Consensus       291 dgt~~~wd~r-~~~---~~y~prp~~----~~~~~-~~~s~~~~~~~~~f~Tgs--------~-----------------  336 (1113)
T KOG0644|consen  291 DGTCRIWDAR-LEP---RIYVPRPLK----FTEKD-LVDSILFENNGDRFLTGS--------R-----------------  336 (1113)
T ss_pred             CCceEecccc-ccc---cccCCCCCC----ccccc-ceeeeecccccccccccc--------C-----------------
Confidence            7899999987 222   222333310    00000 001111111222221110        0                 


Q ss_pred             CCceeEeeehhhhhhhhccccee-ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003907          290 GSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (787)
Q Consensus       290 ~g~lva~~a~d~sk~la~G~~kt-ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH  368 (787)
                        ...|+     ..+...-..+. +.-+.    ..        +++..  . -..++-.+-.+.+|++.++..++.+.+|
T Consensus       337 --d~ea~-----n~e~~~l~~~~~~lif~----t~--------ssd~~--~-~~~~ar~~~~~~vwnl~~g~l~H~l~gh  394 (1113)
T KOG0644|consen  337 --DGEAR-----NHEFEQLAWRSNLLIFV----TR--------SSDLS--S-IVVTARNDHRLCVWNLYTGQLLHNLMGH  394 (1113)
T ss_pred             --Ccccc-----cchhhHhhhhccceEEE----ec--------ccccc--c-cceeeeeeeEeeeeecccchhhhhhccc
Confidence              00000     00000000000 00000    00        00000  0 0113445678889999999999999999


Q ss_pred             CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907          369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (787)
Q Consensus       369 ~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA  447 (787)
                      ..++..|.|+|-.. ...+|+.||. +.|||+..       |        ...+.|.  .|  +..+.+.+||+||+-++
T Consensus       395 sd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g--------~pik~y~--~g--h~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------G--------IPIKHYF--IG--HGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             ccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------C--------Ccceeee--cc--cceeeccccCCCCceEe
Confidence            99999999999554 4557888776 67999843       3        1233343  44  35688999999999999


Q ss_pred             EEeCCCeEEEEeCC
Q 003907          448 IVSSKGTCHVFVLS  461 (787)
Q Consensus       448 s~S~dgTVhIwdl~  461 (787)
                      ...+-|-+.|+...
T Consensus       455 lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  455 LSDDHGQLYILGTG  468 (1113)
T ss_pred             cCCCCCceEEeccC
Confidence            99999988887653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.91  E-value=5.6e-08  Score=110.43  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=73.0

Q ss_pred             CCCceEEEEECCCCcEE------E--EeccC---CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907          346 DNAGIVVVKDFVTRAII------S--QFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v------~--~~~aH---~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      +.||.|+|||++.....      .  .+.-|   .-.+.+|..+..|++|.....|++ |..|++.....          
T Consensus       237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~----------  305 (720)
T KOG0321|consen  237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSI----------  305 (720)
T ss_pred             CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCc----------
Confidence            35999999999875322      2  22233   236788999999998765555565 99999854310          


Q ss_pred             cCCcceEEEEEecccccccE-EEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCC
Q 003907          415 WNSSHVHLYKLHRGITSATI-QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQG  476 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I-~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~  476 (787)
                           ..+..+. |.-+..+ ..=..|||+.+|++++.|+-+.||.++...... .+.+|+-.+
T Consensus       306 -----sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV  363 (720)
T KOG0321|consen  306 -----SPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV  363 (720)
T ss_pred             -----Cchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence                 1111111 1111111 113469999999999999999999998776654 346675543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.90  E-value=2.8e-07  Score=105.69  Aligned_cols=290  Identities=14%  Similarity=0.163  Sum_probs=160.3

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      +..++-|...-++|||-... .....+.+|.++|.|++++|.-.       +.   +.+  |+|+               
T Consensus        25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~~---a~~--vsG~---------------   76 (764)
T KOG1063|consen   25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------IV---AEM--VSGD---------------   76 (764)
T ss_pred             cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------cc---ceE--EEcc---------------
Confidence            45788888888999997653 34567789999999999998632       11   233  3443               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecCCeEEE-EeCCeEEEEECCCCc--eeEEEE
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL  228 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~~~LaV-~~~~~I~iwD~~T~e--~l~tl~  228 (787)
                                      ++++|++|-++....++.+.+..   .+.+|...+....+ +.++.+++||.+.-+  +++.+.
T Consensus        77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r  140 (764)
T KOG1063|consen   77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR  140 (764)
T ss_pred             ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence                            24789999998555555444332   55565555544444 567789999995544  233332


Q ss_pred             ecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc--eeEeeehhhh
Q 003907          229 TYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS--LVARYAMEHS  302 (787)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~--lva~~a~d~s  302 (787)
                      - .....         + .-.+++.+    -.||.++++..+--.+                 .+.++  .++       
T Consensus       141 f-~~k~~---------i-pLcL~~~~~~~~~lla~Ggs~~~v~~~s-----------------~~~d~f~~v~-------  185 (764)
T KOG1063|consen  141 F-EIKEA---------I-PLCLAALKNNKTFLLACGGSKFVVDLYS-----------------SSADSFARVA-------  185 (764)
T ss_pred             h-hhhhH---------h-hHHHhhhccCCcEEEEecCcceEEEEec-----------------cCCcceeEEE-------
Confidence            1 00000         0 00111111    1345554432110000                 00000  011       


Q ss_pred             hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc---------------------E
Q 003907          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------------------I  361 (787)
Q Consensus       303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---------------------~  361 (787)
                               .+.++..      ....+.++-... +...++++++|..|+||.+.-+.                     .
T Consensus       186 ---------el~GH~D------WIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~  249 (764)
T KOG1063|consen  186 ---------ELEGHTD------WIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI  249 (764)
T ss_pred             ---------Eeeccch------hhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence                     1111110      011111110000 12345688999999999763211                     1


Q ss_pred             E----------EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccCCCCCC--cc--ccCC--
Q 003907          362 I----------SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRSGSGNH--KY--DWNS--  417 (787)
Q Consensus       362 v----------~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~--------~~~~~g~~--~~--~~~~--  417 (787)
                      .          +.+.+|++.|.++-|+|.|..|++||. |+++.||.-....        .+...|++  .+  .|.+  
T Consensus       250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa-DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~  328 (764)
T KOG1063|consen  250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA-DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS  328 (764)
T ss_pred             eeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc-CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence            1          223489999999999999999999999 4558899743220        00001111  00  0111  


Q ss_pred             ---------cceEEEE-------E----ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          418 ---------SHVHLYK-------L----HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       418 ---------s~~~l~~-------l----~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                               ...++++       .    -.| |.+.|++++|+|.|.||.++|.|.|.+||.--
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG-H~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISG-HVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeecccccc-ccccceeeeecCCCCEEEEeccccceeeeccc
Confidence                     1123333       1    123 33469999999999999999999999999754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.89  E-value=7.8e-08  Score=103.78  Aligned_cols=110  Identities=17%  Similarity=0.338  Sum_probs=71.1

Q ss_pred             cccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCC--CCCCcc--c
Q 003907          343 ADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKY--D  414 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s---~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~--~g~~~~--~  414 (787)
                      ++++.+|+++|||++.   ++++++|+-|..||++|.|+|. ...||.++. +..|.|||+........  .-....  +
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDlsvE~D~ee~~~~a~~~L~d  396 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLSVEADEEEIDQEAAEGLQD  396 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEeeccCChhhhccccccchhc
Confidence            4567899999999975   5789999999999999999994 344555555 45699999965321000  000000  1


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEe
Q 003907          415 WNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFV  459 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwd  459 (787)
                      ..  .+.++. +.|.  ..|..+.|.+.- -+|++.+.|| +.||.
T Consensus       397 lP--pQLLFV-HqGQ--ke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  397 LP--PQLLFV-HQGQ--KEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CC--ceeEEE-ecch--hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            11  123332 3342  368899999864 4778888888 44553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.88  E-value=9.6e-08  Score=100.24  Aligned_cols=176  Identities=18%  Similarity=0.296  Sum_probs=114.1

Q ss_pred             CCEEEEEECCCCeE--EE-EE-eCCCcEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907          172 PTAVRFYSFQSHCY--EH-VL-RFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI  243 (787)
Q Consensus       172 p~tVrlWdlktg~~--v~-tL-~f~s~V~sV~~s~---~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~  243 (787)
                      ++|..|||+.+|..  ++ .| -+..+|++|+|.+   +++| ||.++.+++||++.++.-..+...|.|.         
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~---------  242 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS---------  242 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC---------
Confidence            47999999998732  22 33 3567999999977   5666 5778899999999988655555544430         


Q ss_pred             ccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       244 ~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                         .-.+-     |+....++                                                  .|.      
T Consensus       243 ---~pLlR-----LswnkqDp--------------------------------------------------nym------  258 (364)
T KOG0290|consen  243 ---TPLLR-----LSWNKQDP--------------------------------------------------NYM------  258 (364)
T ss_pred             ---Cccee-----eccCcCCc--------------------------------------------------hHH------
Confidence               00011     11111110                                                  000      


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~  401 (787)
                                        ...+.....|.|.|++.. .+++.|+.|++.|++++|.| +...|+||++ +..+-|||+..
T Consensus       259 ------------------ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q  319 (364)
T KOG0290|consen  259 ------------------ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQ  319 (364)
T ss_pred             ------------------hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEeccc
Confidence                              001233457889999864 57899999999999999999 5778999998 66799999954


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCC
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKG  453 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dg  453 (787)
                      .+..+  +   .    .....|.  .   .++|..|.|++ .+.||+++..+.
T Consensus       320 ~~~~~--~---~----dPilay~--a---~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  320 MPREN--G---E----DPILAYT--A---GGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             ccccC--C---C----Cchhhhh--c---cceeeeeeecccCCCEEEEEecCe
Confidence            21101  0   0    0012233  1   24699999994 678999998653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.88  E-value=6.1e-08  Score=107.30  Aligned_cols=207  Identities=14%  Similarity=0.278  Sum_probs=140.0

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ...++.|..+| ++|||+. ..-+++-+..|...|.+|-+--+           +.  .||.|.-+              
T Consensus        91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-----------De--yiAsvs~g--------------  142 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-----------DE--YIASVSDG--------------  142 (673)
T ss_pred             ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-----------cc--eeEEeccC--------------
Confidence            34667777776 8999996 56677778888899999987622           22  67765421              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--Ce-EEEE-eCCeEEEEECCCCceeEEE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RI-VAVG-LATQIYCFDALTLENKFSV  227 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~-LaV~-~~~~I~iwD~~T~e~l~tl  227 (787)
                                         +-|.|..++++..-.++...+  .|.-+++++  +. |.++ .++.|++||+..+...+..
T Consensus       143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence                               358899999999888888763  677888877  44 4444 4557999999887655544


Q ss_pred             E-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          228 L-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       228 ~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      . .|..|.             .-+.|       +                           |++--|.            
T Consensus       204 ~~~HsAP~-------------~gicf-------s---------------------------psne~l~------------  224 (673)
T KOG4378|consen  204 SEAHSAPC-------------RGICF-------S---------------------------PSNEALL------------  224 (673)
T ss_pred             hhhccCCc-------------Cccee-------c---------------------------CCccceE------------
Confidence            3 243330             01112       1                           1111111            


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT  386 (787)
                                                          ++.+.|..|.+||....+....|.. ..|.++++|+++|.+|+.
T Consensus       225 ------------------------------------vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  225 ------------------------------------VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             ------------------------------------EEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEe
Confidence                                                1234678899999998776666643 469999999999999999


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      |+.+|. |.-||++..                ..++..+.  .+.+.|++|+|-|--
T Consensus       268 G~s~G~-~i~YD~R~~----------------k~Pv~v~s--ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  268 GNSKGE-LIAYDMRST----------------KAPVAVRS--AHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCce-EEEEecccC----------------CCCceEee--ecccceeEEEeeecc
Confidence            999887 778998531                13444443  234569999998754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=5.6e-09  Score=124.91  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=78.3

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCc
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~--pIsaLaFSpdG-~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      ++..+|.+.|||++..+.+-.|.-|..  .++.|+|+|++ +.|++|+.|++  +|.+||++..      -         
T Consensus       179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a------s---------  243 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA------S---------  243 (1049)
T ss_pred             ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc------C---------
Confidence            456688999999999988888876644  47899999974 57888888765  6999998531      0         


Q ss_pred             ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 003907          419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~  462 (787)
                       ..+.++ +|+. .-|.+|+|++.+ ++|++++.|+.|.+|+.++
T Consensus       244 -sP~k~~-~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  244 -SPLKIL-EGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             -Cchhhh-cccc-cceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence             234444 3433 348999999866 9999999999999999887

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=3.3e-09  Score=120.75  Aligned_cols=314  Identities=25%  Similarity=0.306  Sum_probs=184.5

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .+..+++||=.| .++|-..-.+.+.+.+.++.|+|+.+.++++-              ++.+                 
T Consensus       251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~viv-----------------  299 (788)
T KOG2109|consen  251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIV-----------------  299 (788)
T ss_pred             chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEe-----------------
Confidence            356788888777 79998877888888899999999999888531              3222                 


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe-cC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP  231 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t-~p  231 (787)
                                            ..|-+++....++.++++..+++++-+..+|++++-..+.|++++.++..-++.. ++
T Consensus       300 ----------------------kdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~q  357 (788)
T KOG2109|consen  300 ----------------------KDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQ  357 (788)
T ss_pred             ----------------------ecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccc
Confidence                                  1123444555566666766777777777778877766666777666765444432 22


Q ss_pred             CcccCCCCccccccccceeEEccceEEEec---CCceec---CcceeccccCCCCCcC-----CCc---CCCCCceeEee
Q 003907          232 VPQLAGQGAVGINVGYGPMAVGPRWLAYAS---NTLLLS---NSGRLSPQNLTPSGVS-----PST---SPGGSSLVARY  297 (787)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~lAlspr~LAyas---~~~~l~---~~g~~s~q~lt~~~~s-----~s~---sp~~g~lva~~  297 (787)
                      .+            ...+.++.++||++.-   ...++.   ..|.  .-.+++.+.-     ++.   ..+.+-+++. 
T Consensus       358 s~------------~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge--~P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~-  422 (788)
T KOG2109|consen  358 SL------------VVSPRANTAAVIQDICFSEVSTIRTAGSCEGE--PPALSLTCQLPAYADTSLDLGLQSSGGLAAE-  422 (788)
T ss_pred             cc------------ccchhcchHHHHHHHhhhhhcceEeecccCCC--CcccccccccchhhchhhhccccccCcccce-
Confidence            21            0124555554443321   100000   0000  0001100000     000   0011111111 


Q ss_pred             ehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccc-c-cccCCCceEEEEEC-----CCC-cEEEEeccCC
Q 003907          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA-G-ADMDNAGIVVVKDF-----VTR-AIISQFKAHT  369 (787)
Q Consensus       298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~-~-~s~~~dG~V~IwDl-----~s~-~~v~~~~aH~  369 (787)
                                |+.-+-.+||...+..++....+.-++.+..+.. + ..-...|.+.+.+.     ..+ .++..+-+|.
T Consensus       423 ----------gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs  492 (788)
T KOG2109|consen  423 ----------GLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHS  492 (788)
T ss_pred             ----------eeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeecc
Confidence                      1111112333332211111111111222221110 0 01112233333332     123 5677788999


Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      .++..+.|+++++++.|++..++.+.+|.++|+...+.        -....++|++.||.+.++|..++|+-|++|+|..
T Consensus       493 ~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~  564 (788)
T KOG2109|consen  493 DPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAIT  564 (788)
T ss_pred             CccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEeecchhhhhhh
Confidence            99999999999999999999888779999988643211        1123689999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCCCcccccccc
Q 003907          450 SSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       450 S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ...+|-|||.+.+|++....++|.
T Consensus       565 t~~~TthVfk~hpYgg~aeqrth~  588 (788)
T KOG2109|consen  565 TNHATTHVFKVHPYGGKAEQRTHG  588 (788)
T ss_pred             hcCCceeeeeeccccccccceecC
Confidence            999999999999999999999985

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.86  E-value=2.5e-06  Score=92.30  Aligned_cols=194  Identities=19%  Similarity=0.294  Sum_probs=125.6

Q ss_pred             EEEEEECCCCeEEEEEeCC----CcEEEEEecCC--eEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 003907          174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN  244 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~----s~V~sV~~s~~--~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~  244 (787)
                      .|.|||+++-+.+|+++-.    ..+.++..|..  +||.=.   .+.|++||+.+++..-+|..|..+           
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~-----------  175 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP-----------  175 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence            4999999999999999753    25777777774  777622   346999999999988888877653           


Q ss_pred             cccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       245 ~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                        .-.+||++  .+||.++                                                             
T Consensus       176 --lAalafs~~G~llATAS-------------------------------------------------------------  192 (391)
T KOG2110|consen  176 --LAALAFSPDGTLLATAS-------------------------------------------------------------  192 (391)
T ss_pred             --eeEEEECCCCCEEEEec-------------------------------------------------------------
Confidence              23455544  3444443                                                             


Q ss_pred             CCCCCCcccCCccccccccccccCCCc-eEEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG-~V~IwDl~s~~~v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                                              ..| .|||+++.+++.+.+|+.-..  .|.+|+|+||+++|+..|..++ |+||.+
T Consensus       193 ------------------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL  247 (391)
T KOG2110|consen  193 ------------------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKL  247 (391)
T ss_pred             ------------------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEe
Confidence                                    233 478999999999999986544  5789999999999998888675 999998


Q ss_pred             CCCccc-CC---CCCCccc-c----C----CcceEEEEEeccccc------ccEEEEEEc--cCCCEEEEEeCCCeEEEE
Q 003907          400 MPSCMR-SG---SGNHKYD-W----N----SSHVHLYKLHRGITS------ATIQDICFS--HYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       400 ~~~~~~-~~---~g~~~~~-~----~----~s~~~l~~l~rG~~~------a~I~slaFS--pDg~~LAs~S~dgTVhIw  458 (787)
                      ...... ..   .+....+ +    .    ..........|....      ..=..++|+  ++...+.+++.||.+..|
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y  327 (391)
T KOG2110|consen  248 EKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY  327 (391)
T ss_pred             cccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence            643210 00   0000000 0    0    000000111111100      101234455  577899999999999999


Q ss_pred             eCCCC-CCc
Q 003907          459 VLSPF-GGD  466 (787)
Q Consensus       459 dl~~~-gg~  466 (787)
                      .+++. ||+
T Consensus       328 ~l~~~~gGe  336 (391)
T KOG2110|consen  328 RLPPKEGGE  336 (391)
T ss_pred             EcCCCCCce
Confidence            99985 444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=9.3e-08  Score=104.98  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=100.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .++|+|-|+...|+++      .+++|+.|+.+ .+++||++ .+++..++..|.+.|.++++-|.          ..  
T Consensus       239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~----------~p--  299 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPY----------EP--  299 (463)
T ss_pred             cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCC----------Cc--
Confidence            4579999999999874      47899999986 59999995 58899999999999999999863          23  


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEecC---CeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP---RIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-g~~v~tL~f~s~V~sV~~s~---~~La  206 (787)
                       .+++ +|.                               .+++|.+.|.+. .+.-..++|.+.|-.|.+++   ..+.
T Consensus       300 -~~LL-sGs-------------------------------~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  300 -SVLL-SGS-------------------------------YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             -eEEE-ecc-------------------------------ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence             3333 221                               247999999984 45556778999999999987   4555


Q ss_pred             EEe-CCeEEEEECCCC-ceeEEEEecCCc
Q 003907          207 VGL-ATQIYCFDALTL-ENKFSVLTYPVP  233 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~-e~l~tl~t~p~p  233 (787)
                      ++. ++.+|-||++.. +.++++..|..+
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~  375 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDE  375 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCC
Confidence            555 568999999876 788888877653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.84  E-value=3.9e-08  Score=111.15  Aligned_cols=102  Identities=14%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +.+.+|-+|+|||+.+++....|.+|++.|..++|||||+++||...||+ ||||+-+..                ..++
T Consensus       694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~----------------e~pv  756 (1012)
T KOG1445|consen  694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSR----------------EQPV  756 (1012)
T ss_pred             hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCC----------------CCcc
Confidence            34567889999999999999999999999999999999999999999886 999986431                1344


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----TVhIwdl~~  462 (787)
                      |+-. |.....=-.|.|.-||++|++.+.|.    -|.+|+...
T Consensus       757 ~Eg~-gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  757 YEGK-GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ccCC-CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            4321 11111113467899999999988775    355555543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.83  E-value=4.7e-08  Score=105.90  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +++.|.+|.|||+.+++.+-++. |..-|.+++|+.||.+|+|++. ++.|||||.+.       |          ..+.
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~-------~----------~~v~  209 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR-------G----------TVVS  209 (472)
T ss_pred             hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-cceeEEEcCCC-------C----------cEee
Confidence            45678899999999999988888 9999999999999999999999 56699999764       3          2344


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEeCCCCCCccccc
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S---~dgTVhIwdl~~~gg~~~~~  470 (787)
                      +- .++..+.-...-|=.+|+.+.+|-   ++..+-|||-+....+..+.
T Consensus       210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~  258 (472)
T KOG0303|consen  210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ  258 (472)
T ss_pred             ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence            43 334444455677888999554443   34678899987766655443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.83  E-value=2.9e-07  Score=107.13  Aligned_cols=276  Identities=15%  Similarity=0.174  Sum_probs=158.1

Q ss_pred             cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 003907           85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ  164 (787)
Q Consensus        85 G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~  164 (787)
                      .+-||++.+.. .-++.=....+|.++.+.|          |..+  +| +.++                          
T Consensus       223 ~~~vW~~~~p~-~Pe~~~~~~s~v~~~~f~p----------~~p~--ll-~gG~--------------------------  262 (555)
T KOG1587|consen  223 VLLVWSLKNPN-TPELVLESPSEVTCLKFCP----------FDPN--LL-AGGC--------------------------  262 (555)
T ss_pred             eEEEEecCCCC-CceEEEecCCceeEEEecc----------CCcc--eE-Eeec--------------------------
Confidence            58999998764 3444444456799999887          4334  44 3221                          


Q ss_pred             CCCCCCCCCEEEEEECCCCeE--EEEEe-----CCCcEEEEEecC-----CeEEEEeCCeEEEEECCCCceeE-EEEecC
Q 003907          165 SGNCVNSPTAVRFYSFQSHCY--EHVLR-----FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKF-SVLTYP  231 (787)
Q Consensus       165 ~~~~~~~p~tVrlWdlktg~~--v~tL~-----f~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~T~e~l~-tl~t~p  231 (787)
                            ..+.|-+||++.+..  ...+.     ++.+|.+|.+..     +++.++.|++|..|++.-+.+.. .+...+
T Consensus       263 ------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~  336 (555)
T KOG1587|consen  263 ------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES  336 (555)
T ss_pred             ------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence                  125899999998876  44443     456888888744     47778889999999877655422 222211


Q ss_pred             CcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907          232 VPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (787)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~  307 (787)
                      .+....+  .....+...++|-+    +++. ++....+..   ...+.+++..                      .   
T Consensus       337 ~~~~~~~--~~~~~~~t~~~F~~~~p~~FiV-GTe~G~v~~---~~r~g~~~~~----------------------~---  385 (555)
T KOG1587|consen  337 KKHKGQQ--SSKAVGATSLKFEPTDPNHFIV-GTEEGKVYK---GCRKGYTPAP----------------------E---  385 (555)
T ss_pred             ccccccc--cccccceeeEeeccCCCceEEE-EcCCcEEEE---EeccCCcccc----------------------c---
Confidence            1100000  00011233455543    3332 222211110   0112221100                      0   


Q ss_pred             ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCC-CCEEE
Q 003907          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPS-GTLLV  385 (787)
Q Consensus       308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpd-G~lLA  385 (787)
                       +  .+..+..-..-.+....+.++|-...+   +.+ ..|-+|+||.-. ...++..+..+...|.+++|||. -..+|
T Consensus       386 -~--~~~~~~~~~~h~g~v~~v~~nPF~~k~---fls-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  386 -V--SYKGHSTFITHIGPVYAVSRNPFYPKN---FLS-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             -c--cccccccccccCcceEeeecCCCccce---eee-eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence             0  000011111112222333333322221   122 238999999988 67788888899999999999995 46788


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ++..+|+ |.|||+.....               .++.....+  ......+.|+++|+.|++|...|++|+|++..
T Consensus       459 ~~d~~G~-l~iWDLl~~~~---------------~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  459 TVDGDGN-LDIWDLLQDDE---------------EPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCCCc-eehhhhhcccc---------------CCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            8888776 99999954210               122222222  23467788999999999999999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.83  E-value=4.6e-06  Score=88.31  Aligned_cols=223  Identities=16%  Similarity=0.234  Sum_probs=145.9

Q ss_pred             EecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccC
Q 003907           81 GYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG  159 (787)
Q Consensus        81 G~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g  159 (787)
                      +..+ .+++||+.........+..|...|..+.+.|+.             ..++.  +..                   
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~--~~~-------------------  175 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS--GSS-------------------  175 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe--cCC-------------------
Confidence            4424 489999965245566777888899999888642             13333  210                   


Q ss_pred             CcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecCC---eEEE-EeCCeEEEEECCCCceeE-EEEecCCc
Q 003907          160 MMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKF-SVLTYPVP  233 (787)
Q Consensus       160 ~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~~---~LaV-~~~~~I~iwD~~T~e~l~-tl~t~p~p  233 (787)
                                 ..+.+++|++.++..+..+.. ...|..+++++.   +++. +.+..|++||..+++.+. .+..|...
T Consensus       176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         176 -----------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             -----------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence                       136899999999899998986 468999999873   3333 346679999888666555 23332221


Q ss_pred             ccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceee
Q 003907          234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL  313 (787)
Q Consensus       234 ~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktl  313 (787)
                                    . +.      .+..                           .+ .                     
T Consensus       245 --------------~-~~------~~~~---------------------------~~-~---------------------  254 (466)
T COG2319         245 --------------V-VS------SFSP---------------------------DG-S---------------------  254 (466)
T ss_pred             --------------e-eE------eECC---------------------------CC-C---------------------
Confidence                          0 00      0110                           00 0                     


Q ss_pred             cccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907          314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (787)
Q Consensus       314 s~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~  392 (787)
                                                 ....+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.| .
T Consensus       255 ---------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~  306 (466)
T COG2319         255 ---------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G  306 (466)
T ss_pred             ---------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C
Confidence                                       001235688999999987664 55557899999999999999999998887 4


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCCC
Q 003907          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG  464 (787)
Q Consensus       393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~g  464 (787)
                      .+++||+...                 ....... .++ ...|..+.|++++..++.+ ..|+.+.+|++....
T Consensus       307 ~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         307 TVRLWDLETG-----------------KLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             cEEEEEcCCC-----------------ceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            5999987531                 1122221 222 2258999995443566666 688999999988654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=106.97  Aligned_cols=129  Identities=21%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc---
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS---  418 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s---  418 (787)
                      ++.+..+|.|.|||+.+...-..|.+|..||.+||||+||++|+|+|. +..|.+||+........-.-.+..|...   
T Consensus        38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~gs~l~rirf~spv~~~q~hp  116 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP  116 (405)
T ss_pred             eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccCCCceeEEEccCccceeeecc
Confidence            457889999999999999988899999999999999999999999999 5669999986421000000000011100   


Q ss_pred             -c--eE----------EEEEecccc-----------cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907          419 -H--VH----------LYKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (787)
Q Consensus       419 -~--~~----------l~~l~rG~~-----------~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~  471 (787)
                       .  ..          +..+.-+.+           +..-.+..|.+-|++|.+|..+|.++|++.++.+....++.
T Consensus       117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri  193 (405)
T KOG1273|consen  117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI  193 (405)
T ss_pred             ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence             0  00          011110000           00012234778899999999999999999998866655544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.79  E-value=2.7e-08  Score=108.15  Aligned_cols=130  Identities=15%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             ccccCCCceEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907          342 GADMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~---------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~  412 (787)
                      ++++..|..|+||-+...         +.+..|..|+..|+++.|+|+|.+||||+++| .|.+|.........  ....
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e  105 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTE  105 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccch
Confidence            456778889999987542         24567788999999999999999999999955 59999764210000  0000


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (787)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~  475 (787)
                      .+.....+.+.+..|| +...|++++|+||++++++++.|.++++||+....-...+..|..-
T Consensus       106 ~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             hhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            1111222455555566 4568999999999999999999999999999876555555666543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=4.8e-06  Score=95.01  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=45.9

Q ss_pred             EEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          373 SALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      ...+|||||++||..+.++.  .|.+||+..       +           ....+..+   ....+.+|+|||++|+.++
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEEE
Confidence            35789999999998776543  588899843       2           11222222   1246789999999999888


Q ss_pred             CCC-eEEEEeCCCCC
Q 003907          451 SKG-TCHVFVLSPFG  464 (787)
Q Consensus       451 ~dg-TVhIwdl~~~g  464 (787)
                      .++ .-.++-+...+
T Consensus       390 ~~~g~~~l~~~~~~g  404 (427)
T PRK02889        390 QQGGRSVLAAVSSDG  404 (427)
T ss_pred             ecCCCEEEEEEECCC
Confidence            654 33444444333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=3e-07  Score=98.35  Aligned_cols=105  Identities=14%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      ..+.+++|+.+| +++||... ++..+.++.+.+.+..++|+-.            +.|-++.+++              
T Consensus        39 ~e~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~------------ds~h~v~s~s--------------   91 (376)
T KOG1188|consen   39 FETAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISC------------DSPHGVISCS--------------   91 (376)
T ss_pred             cceeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecC------------CCCCeeEEec--------------
Confidence            346789999887 99999965 7788889988888888887731            1233333232              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----cE--EEEEecCCeEEEEeCC-----eEEEEECCCC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SV--CMVRCSPRIVAVGLAT-----QIYCFDALTL  221 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s----~V--~sV~~s~~~LaV~~~~-----~I~iwD~~T~  221 (787)
                                        ++++||+||+++...+..+.+..    +-  +++-|+.++++.+.+.     .+++||++.-
T Consensus        92 ------------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~  153 (376)
T KOG1188|consen   92 ------------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE  153 (376)
T ss_pred             ------------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence                              24699999999998888776542    22  4444567888888753     4999999865


Q ss_pred             ce
Q 003907          222 EN  223 (787)
Q Consensus       222 e~  223 (787)
                      +.
T Consensus       154 qq  155 (376)
T KOG1188|consen  154 QQ  155 (376)
T ss_pred             cc
Confidence            53

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=5.9e-06  Score=94.39  Aligned_cols=51  Identities=25%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~  223 (787)
                      ..|.+||+++++......+.+...++++++  +.|++..  ++  +|++||+.+++.
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence            479999999988655445666666788887  5566543  22  599999988763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.69  E-value=5.5e-07  Score=94.69  Aligned_cols=104  Identities=14%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             ccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          344 DMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      +.+.||.|++||++..+--..+   .....|+..|++++ |-++|||-..|...|.|-|++.-      +          
T Consensus       214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~----------  277 (364)
T KOG0290|consen  214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C----------  277 (364)
T ss_pred             EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C----------
Confidence            4467999999999986543333   23256899999988 56789999888888999999642      2          


Q ss_pred             eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ..+.+|++  |.+.|..|+|.|.+ ..|+++++|.-+-|||+.....
T Consensus       278 tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  278 TPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            36677764  56789999999975 7899999999999999987644

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.8e-06  Score=101.50  Aligned_cols=102  Identities=20%  Similarity=0.252  Sum_probs=78.7

Q ss_pred             ccccCCCceEEEEECCC----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          342 GADMDNAGIVVVKDFVT----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s----~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      .+.++.||.|.||.--.    ......|.=|..+|.+++|++||.+|.||+.+| .+-+|.+.+       +        
T Consensus       220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T-------~--------  283 (792)
T KOG1963|consen  220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLET-------G--------  283 (792)
T ss_pred             EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecC-------C--------
Confidence            45778899999995322    224556777899999999999999999999966 688999854       2        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                        .+. -|-|  -.+.|..+.+|||+...+....|..||+-......
T Consensus       284 --~kq-fLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  284 --KKQ-FLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             --Ccc-cccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence              111 1222  23679999999999999999999999998875543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.68  E-value=8.7e-07  Score=90.54  Aligned_cols=126  Identities=21%  Similarity=0.295  Sum_probs=87.8

Q ss_pred             EEEEEECC-CCeEEEEEeC--CCcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          174 AVRFYSFQ-SHCYEHVLRF--RSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       174 tVrlWdlk-tg~~v~tL~f--~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      ...||.++ .+..+..++.  .++|.+++++|  +.+|+..   ..+|.+||+. ++.++++...+              
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~--------------  102 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP--------------  102 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC--------------
Confidence            44555552 2345566654  45799999998  4565543   3479999996 66666654321              


Q ss_pred             ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                       .+.+.++|  ++||.++..                                                            
T Consensus       103 -~n~i~wsP~G~~l~~~g~~------------------------------------------------------------  121 (194)
T PF08662_consen  103 -RNTISWSPDGRFLVLAGFG------------------------------------------------------------  121 (194)
T ss_pred             -ceEEEECCCCCEEEEEEcc------------------------------------------------------------
Confidence             24577877  677776521                                                            


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEe
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFR  398 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-----G~~IrVWd  398 (787)
                                            ...|.|.+||+.+.+.+.++...  .++.++|||||++|+|++..     ++.++||+
T Consensus       122 ----------------------n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  122 ----------------------NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             ----------------------CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence                                  23478999999998888877543  47899999999999999763     45689999


Q ss_pred             C
Q 003907          399 I  399 (787)
Q Consensus       399 i  399 (787)
                      .
T Consensus       178 ~  178 (194)
T PF08662_consen  178 F  178 (194)
T ss_pred             e
Confidence            7

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=8.1e-07  Score=105.74  Aligned_cols=106  Identities=14%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             cccCCCceEEEEECCCCcE--EEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          343 ADMDNAGIVVVKDFVTRAI--ISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~--v~~~~aH~--~-pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      .+++++|.|++||++....  .-++..|.  + .+++|..+++...+|+|+. + .|+||++.        |..-..   
T Consensus      1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l~~--- 1339 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQLNI--- 1339 (1387)
T ss_pred             eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhhcc---
Confidence            3578899999999987432  23344554  4 5999999999999999997 4 59999984        210000   


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                        .+-+...-|.....+.|++|+|---.||+|+.|.+|.||...+.
T Consensus      1340 --~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 --IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             --cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence              00111111222335799999999999999999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.66  E-value=2e-06  Score=90.47  Aligned_cols=103  Identities=19%  Similarity=0.237  Sum_probs=82.0

Q ss_pred             CCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      ..+++++.||+++.+....|. +|...|..|.|+|+-. +||||++||. |||||++..                ..++.
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~  252 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ  252 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence            468899999999988777774 8999999999999855 6899998776 999998541                13566


Q ss_pred             EEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      ++. + +...|+++.|.|- .+.|.+++.|..|.+|.......++
T Consensus       253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~  295 (370)
T KOG1007|consen  253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ  295 (370)
T ss_pred             ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence            664 3 3457999999984 5789999999999999887655444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=2.1e-06  Score=102.29  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=75.7

Q ss_pred             cCCCceEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          345 MDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~---~~v~~~~aH~~p--IsaLaFSpdG~l-LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      |-.||.|++||.+..   ..+...+.|...  |..+.|.++|-- |++||.+|. |++||++.....+           .
T Consensus      1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~-----------~ 1294 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET-----------F 1294 (1387)
T ss_pred             eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc-----------c
Confidence            446899999998753   357778899887  999999998876 999999886 9999996421000           0


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ....+...-|.   ..++|..+++...||+|+. +.|+||++..
T Consensus      1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            01122222231   3788999999999999999 9999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.65  E-value=2.6e-07  Score=94.35  Aligned_cols=94  Identities=15%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      .+..++.|.+||+. .+.+..|.  ..+++.|.|||+|++||+|+.++  ..|.+||+..       .          ..
T Consensus        78 ~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~  137 (194)
T PF08662_consen   78 YGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KK  137 (194)
T ss_pred             EccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EE
Confidence            34556799999996 66667764  56889999999999999998632  2499999853       1          34


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEeCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS  461 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~------dgTVhIwdl~  461 (787)
                      +.+...    ..+.+++|||||++|++++.      |..++||++.
T Consensus       138 i~~~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  138 ISTFEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eecccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            544432    24789999999999999975      6789999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.64  E-value=4e-06  Score=91.73  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CceEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       348 dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      ++.|.+||+.+.    +.+..+.+ ......++|+|+|++|.+++..+..|.|||+...      +.    .........
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~------g~----l~~~~~~~~  169 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD------GH----LVAQEPAEV  169 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC------Cc----ccccCCCce
Confidence            567778877532    22333332 2345678999999999888876678999998541      10    000000111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF  463 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~  463 (787)
                      ....|   .....++|+|||++|+++.. +++|.+|+++..
T Consensus       170 ~~~~g---~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~  207 (330)
T PRK11028        170 TTVEG---AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP  207 (330)
T ss_pred             ecCCC---CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence            22223   22567999999999988876 899999999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.64  E-value=2.9e-05  Score=82.91  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=76.1

Q ss_pred             ccCCCce-EEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cC-CCCCCccc-c--
Q 003907          344 DMDNAGI-VVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RS-GSGNHKYD-W--  415 (787)
Q Consensus       344 s~~~dG~-V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~-~~g~~~~~-~--  415 (787)
                      ++++.|+ |||||..+++.+..|+.-  ...|.+|+|||++.+||.+|++|+ ++||.++.... .. .+-.+... +  
T Consensus       198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lp  276 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLP  276 (346)
T ss_pred             EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccc
Confidence            4455665 899999999999999743  357999999999999999999887 99999875321 00 00000000 0  


Q ss_pred             --CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          416 --NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       416 --~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                        -.+.+-+.+++-  ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus       277 ky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  277 KYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             hhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence              001122222221  1223566889888677777778898877666654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.5e-06  Score=92.04  Aligned_cols=39  Identities=15%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      +.+..+..|.++|..+.|+-.|+.|++.+.||. +|+|..
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWka  317 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKA  317 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhh
Confidence            457788999999999999999999999999886 999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.61  E-value=9.6e-07  Score=98.84  Aligned_cols=202  Identities=19%  Similarity=0.235  Sum_probs=130.7

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ..+|++++.+| |.|.+-  .+.+..-++.|.|.|.+-.+.|+..            -|| . +|+              
T Consensus        75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGt------------gLl-t-~GE--------------  124 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGA------------GLL-T-AGE--------------  124 (737)
T ss_pred             cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCc------------eee-e-ecC--------------
Confidence            34778887777 888764  6788889999999999999997642            143 2 232              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL-~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~  230 (787)
                                        ++.|++|+ ++|-+..++ ++..+|+++++.|  .-++-+..++++|=-+.-...       
T Consensus       125 ------------------DG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k-------  178 (737)
T KOG1524|consen  125 ------------------DGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK-------  178 (737)
T ss_pred             ------------------CceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc-------
Confidence                              25899999 566555555 5778999999977  445555555665532111000       


Q ss_pred             CCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~  310 (787)
                                        ++    +|=|--|  .++.    +                                      
T Consensus       179 ------------------~i----~WkAHDG--iiL~----~--------------------------------------  192 (737)
T KOG1524|consen  179 ------------------II----RWRAHDG--LVLS----L--------------------------------------  192 (737)
T ss_pred             ------------------ee----EEeccCc--EEEE----e--------------------------------------
Confidence                              00    2322211  0000    0                                      


Q ss_pred             eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 003907          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (787)
Q Consensus       311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d  390 (787)
                                             +|.+...-+++++.|-..+|||.. |+.+.+-.+|+.||++++|+|+ +++|.+|- 
T Consensus       193 -----------------------~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-  246 (737)
T KOG1524|consen  193 -----------------------SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-  246 (737)
T ss_pred             -----------------------ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-
Confidence                                   011111123466788899999965 5666667789999999999999 77777775 


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE
Q 003907          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC  455 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTV  455 (787)
                      . +.| +.                         +.    ..+.|..++||+||..+++|+..|-+
T Consensus       247 n-t~R-~~-------------------------~p----~~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  247 N-TAR-FS-------------------------SP----RVGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             e-eee-ec-------------------------CC----CccceEEEEEcCCCceeeccccCceE
Confidence            2 233 11                         11    12358999999999999999998864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.60  E-value=6.7e-08  Score=109.31  Aligned_cols=100  Identities=22%  Similarity=0.296  Sum_probs=79.5

Q ss_pred             cccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907          343 ADMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~-------~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      +.+..||.|+||.+..+       ++-..|.+|...|.+|.|+| -...||++|.| .+|++||+...            
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd-~Ti~lWDl~~~------------  710 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD-STIELWDLANA------------  710 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc-ceeeeeehhhh------------
Confidence            45678999999998653       45667889999999999999 46689999994 56999999642            


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                           ....+| .|+ +..|.+++|||||+.+|+.+.||+++||.-..
T Consensus       711 -----~~~~~l-~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  711 -----KLYSRL-VGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             -----hhhhee-ccC-cCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence                 112233 343 45799999999999999999999999996543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.59  E-value=1.8e-06  Score=93.83  Aligned_cols=128  Identities=11%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeE------eeeeccCcEEEEEEecCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE------LVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~e------lls~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      .-+|+..|+-+.|+-      ...+++++|+.+. +.||++...+-.+.      .|.+|...|..|++-|.        
T Consensus        77 v~GHt~~vLDi~w~P------fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt--------  142 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCP------FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT--------  142 (472)
T ss_pred             ccCccccccccccCc------cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc--------
Confidence            456888887666642      1246899999875 99999966553332      34567778899998874        


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--  202 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--  202 (787)
                          .++.|+..+                                 .+++|.+||+.||+.+.+|.++.-|+++.||.  
T Consensus       143 ----A~NVLlsag---------------------------------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG  185 (472)
T KOG0303|consen  143 ----APNVLLSAG---------------------------------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG  185 (472)
T ss_pred             ----chhhHhhcc---------------------------------CCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence                223554322                                 23699999999999999999999999999988  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 003907          203 RIVAVGL-ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      .+|+++. |.+|+|||.++++.+..-..|
T Consensus       186 s~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             ceeeeecccceeEEEcCCCCcEeeecccc
Confidence            5666654 667999999999876655443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.58  E-value=1.4e-05  Score=87.48  Aligned_cols=301  Identities=17%  Similarity=0.238  Sum_probs=159.3

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCC---C---c--eeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDA---S---N--FNELVSKRDGPVSFLQMQPFPVKDDGCEG  125 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~---~---~--~~ells~~dg~V~~v~~lP~P~~~~~~d~  125 (787)
                      +++.|.-+-|.+-     . ...|++|.. +-+++|-++..   +   .  ..-.|++|+..|..+.+.|+.        
T Consensus        12 ~~~pv~s~dfq~n-----~-~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--------   77 (434)
T KOG1009|consen   12 DHEPVYSVDFQKN-----S-LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--------   77 (434)
T ss_pred             CCCceEEEEeccC-----c-ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--------
Confidence            4556666667641     1 225666554 46999998543   2   1  223577899999999998752        


Q ss_pred             ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC--------C-----Ce---EEEEE
Q 003907          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ--------S-----HC---YEHVL  189 (787)
Q Consensus       126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk--------t-----g~---~v~tL  189 (787)
                           .+||.  |++                               .++|.+|-..        +     .+   ..+.+
T Consensus        78 -----elLAS--g~D-------------------------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l  119 (434)
T KOG1009|consen   78 -----ELLAS--GGD-------------------------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL  119 (434)
T ss_pred             -----Ceeee--cCC-------------------------------CceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence                 27764  322                               1467777544        3     21   22334


Q ss_pred             eCC-CcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC
Q 003907          190 RFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT  263 (787)
Q Consensus       190 ~f~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~  263 (787)
                      .++ ..|+++++++  +++++ +.++.+++||+..++++..+..|..-             ..-+|+.|  .|+|.=+.+
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-------------vqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-------------VQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-------------cceeecchhhhhhhhhccC
Confidence            443 6899999988  45555 45778999999999988887766541             12355655  566553322


Q ss_pred             ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh--hhhhhhcccc--------eeecccccc--cCCCCCCCCccc
Q 003907          264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME--HSKQFAAGLS--------KTLSKYCQE--LLPDGSSSPVSP  331 (787)
Q Consensus       264 ~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d--~sk~la~G~~--------ktls~~~~~--l~p~~s~~~~s~  331 (787)
                      ...-..+ ..+..                ++-++..+  .++.-+.+--        .++..+..+  ++|+|.-. +..
T Consensus       187 r~~~~~~-~~~~~----------------~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll-vtP  248 (434)
T KOG1009|consen  187 RHPEGFS-AKLKQ----------------VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL-VTP  248 (434)
T ss_pred             cccceee-eeeee----------------eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE-Ecc
Confidence            1000000 00000                00000000  0000000000        111111111  23333200 000


Q ss_pred             CCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEEcCCC
Q 003907          332 NSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGN  392 (787)
Q Consensus       332 s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFSp------------------dG~lLATaS~dG~  392 (787)
                      +-..++++.     ..-.+..+++-.. .+++..+..-..+..++.|+|                  -+..+|.|.. + 
T Consensus       249 ag~~~~g~~-----~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~-  321 (434)
T KOG1009|consen  249 AGLFKVGGG-----VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N-  321 (434)
T ss_pred             cceeeeCCc-----eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c-
Confidence            000000000     0012234444332 346666766666777777665                  2334666666 3 


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+-|||.+..                 .+++... +.|-..|++++||+||..|+.+|.||-+-+-.+++.
T Consensus       322 svyvydtq~~-----------------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  322 SVYVYDTQTL-----------------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eEEEeccccc-----------------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            4889997531                 3555443 455567999999999999999999999888777653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=9.6e-07  Score=96.75  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ..|++|+.|+||+++|-|+.+|. |-|++....                 +.++-.++. |...|+.+.|+||.+++++.
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~a-H~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEA-HLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhh-heeeeeeEEEcCCcCccccc
Confidence            57999999999999999999776 899998541                 344444443 34479999999999999999


Q ss_pred             eCCCeEEEEeCCC
Q 003907          450 SSKGTCHVFVLSP  462 (787)
Q Consensus       450 S~dgTVhIwdl~~  462 (787)
                      |.+.+++|..|.-
T Consensus       343 Ss~~~~~v~~l~v  355 (398)
T KOG0771|consen  343 SSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCceeEEEEee
Confidence            9999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=2e-06  Score=98.09  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~  430 (787)
                      |.+||+.+++ +..+..|...+.+.+|+|||+.|+.++..+...+||++...      +          .....+  +..
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~----------~~~~~l--~~~  334 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------G----------GGASLV--GGR  334 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------C----------CCeEEe--cCC
Confidence            4556776655 45566777788899999999988877754445899987431      1          011111  111


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       .  .+.+|||||++|+.++.++. .+||+..
T Consensus       335 -~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~  362 (429)
T PRK01742        335 -G--YSAQISADGKTLVMINGDNV-VKQDLTS  362 (429)
T ss_pred             -C--CCccCCCCCCEEEEEcCCCE-EEEECCC
Confidence             1  45789999999999888764 4588764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.56  E-value=0.00016  Score=80.30  Aligned_cols=84  Identities=19%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      ....|+++|||++|..+......|-+|++.+.     .|        ....+..+..+  ...-.+++|+|||++|+++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence            57889999999999998887778999999431     12        11233333321  12368999999999999887


Q ss_pred             -CCCeEEEEeCCCCCCcccc
Q 003907          451 -SKGTCHVFVLSPFGGDSGF  469 (787)
Q Consensus       451 -~dgTVhIwdl~~~gg~~~~  469 (787)
                       .+++|.+|+++...|....
T Consensus       311 ~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  311 QDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEEEeCCCCcEEE
Confidence             5679999999876666543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=8.3e-05  Score=84.60  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~  223 (787)
                      ..|.+||+.+|+......+.+.+.+.++++  +.|+...  ++  .|++||+.+++.
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            379999999997765455666666788887  5676543  22  599999988763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.49  E-value=2.9e-06  Score=96.82  Aligned_cols=92  Identities=9%  Similarity=0.081  Sum_probs=56.7

Q ss_pred             ccCCCCeEE---EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEcc
Q 003907          366 KAHTSPISA---LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSH  441 (787)
Q Consensus       366 ~aH~~pIsa---LaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSp  441 (787)
                      ++|...|..   +-|..|...||||+.-|..|+||||+....- ..+        .......+....+ .-.+.++....
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~-~r~--------ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA-YRQ--------EPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc-ccc--------CCCcccCccCcccceeeeEEEEecC
Confidence            455555555   5566788999999995556999999753210 000        0001111100000 11266777777


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          442 YSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      -|.+|.+...|++|..|++...+..
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcC
Confidence            7899988888999999999876543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=6.8e-06  Score=96.86  Aligned_cols=231  Identities=16%  Similarity=0.100  Sum_probs=130.9

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecCC-----eE-EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~-----~L-aV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      ++|.||+..||++++.|.++ .++..+.+.++     .+ ...+++.|.+||-..++++.++..+-.+            
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v------------  104 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV------------  104 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce------------
Confidence            58999999999999999876 47888777662     22 3466889999999999998888742211            


Q ss_pred             ccceeEEcc-----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907          246 GYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (787)
Q Consensus       246 ~~~~lAlsp-----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l  320 (787)
                        ..+-+.|     +-.+|.+...      ..+.....                    .+..++..+..+.++.....++
T Consensus       105 --~~~~~~~~~a~~s~~~~~s~~~------~~~~~~~s--------------------~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen  105 --HALVYKPAQADISANVYVSVED------YSILTTFS--------------------KKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             --eEEEechhHhCccceeEeeccc------ceeeeecc--------------------cccccceeeeEeeeccccchhh
Confidence              1111111     1222222110      00000000                    0001111111111110000000


Q ss_pred             CCCC-CCCCcccCCccccccccccccCCCceEEEEECCCCcEEE---Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907          321 LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS---QF-KAHTSPISALCFDPSGTLLVTASVYGNNIN  395 (787)
Q Consensus       321 ~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~---~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir  395 (787)
                      .... -..++..++.+.     +.....+..+.+|+..++....   .+ .-|+.++++.+|||+++++|+|..||+ |.
T Consensus       157 ~~~~~~~~~I~~~~~ge-----~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~  230 (792)
T KOG1963|consen  157 LKEHQEPKSIVDNNSGE-----FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-IL  230 (792)
T ss_pred             hhhhcCCccEEEcCCce-----EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EE
Confidence            0000 011222222111     1122345567788887754111   11 258888999999999999999999998 89


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ||.---.     .+.      .  ..-..|+.  |.+.|.+++||+||.+|.+|+..+.+-+|.+.+.+
T Consensus       231 vw~d~~~-----~~~------~--~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  231 VWRDFGS-----SDD------S--ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             EEecccc-----ccc------c--ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            9973110     010      0  11122333  34689999999999999999999999999998765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=7.2e-06  Score=89.33  Aligned_cols=103  Identities=21%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             cccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      +++..-+.|++||...+ +++.+|.--+.+|+++...|+|+++.+|...|. +..||++.       +          ..
T Consensus       220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl  281 (412)
T KOG3881|consen  220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KL  281 (412)
T ss_pred             EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------ee
Confidence            34456689999999875 588899888999999999999999999998776 89999853       2          23


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +.....|.+ +.|.+|.-.|..++||+++-|..++|||+.+.+
T Consensus       282 ~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  282 LGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            322234543 469999999999999999999999999998743

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=2.3e-05  Score=89.55  Aligned_cols=92  Identities=12%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..|.+||+.+++. ..+..|.......+|+|||+.|+.++..+.  .|.+||+..       +           ....+.
T Consensus       270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt  330 (435)
T PRK05137        270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS  330 (435)
T ss_pred             ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence            3577788887664 456666666778999999999998875432  456666532       1           122222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC---eEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS  461 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~  461 (787)
                      .+  ...+...+|||||++|+..+.++   .+.+|++.
T Consensus       331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence            21  12356688999999999887543   45566653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.48  E-value=3.6e-05  Score=86.67  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=53.9

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      .|.++|+.+++. ..+..+...+...+|+|+|++|+.++.++.  .|.+||+..       +           ....+..
T Consensus       303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~  363 (417)
T TIGR02800       303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD  363 (417)
T ss_pred             eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence            466677766553 334444556778899999999998887542  466777632       1           1112221


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEE
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCH  456 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVh  456 (787)
                      +   ......+|+|||++|+.++.++...
T Consensus       364 ~---~~~~~p~~spdg~~l~~~~~~~~~~  389 (417)
T TIGR02800       364 T---GLDESPSFAPNGRMILYATTRGGRG  389 (417)
T ss_pred             C---CCCCCceECCCCCEEEEEEeCCCcE
Confidence            1   1234578999999999888876443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=4.7e-07  Score=102.04  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=84.4

Q ss_pred             ccccCCCceEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          342 GADMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s--------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      +++++.+|++.+|.+..        -+++.+|++|.+||-|++.+++|..+.||+.||+ |+.|++-+..+    -..++
T Consensus       309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~d----p~ds~  383 (577)
T KOG0642|consen  309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQD----PDDSY  383 (577)
T ss_pred             EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCC----ccccc
Confidence            45788999999999932        2578899999999999999999999999999886 99999843211    00011


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +.    .-+....-|++ ..|+.+++|..-..|+++|.|||+++|....
T Consensus       384 dp----~vl~~~l~Ght-davw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  384 DP----SVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             Cc----chhccceeccc-cceeeeeecccccceeeecCCceEEeeccCC
Confidence            11    11222234654 4599999999999999999999999998753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.46  E-value=1.5e-06  Score=90.39  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=52.0

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      .+++.=||.|+||..++.++++.++-|...|++++|+|+-.++|.||.|++ |-+|++
T Consensus       266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            346677999999999999999999999999999999999999999999665 999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.44  E-value=0.00059  Score=75.94  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             CCceEEEEECCCC-----cEEEEecc-------CCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCccc
Q 003907          347 NAGIVVVKDFVTR-----AIISQFKA-------HTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMR  405 (787)
Q Consensus       347 ~dG~V~IwDl~s~-----~~v~~~~a-------H~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~  405 (787)
                      ..|.|.+.|+...     +.+..+..       ..+.+.-++++|+|+.|..+..         .++.|.++|..+    
T Consensus       213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t----  288 (352)
T TIGR02658       213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT----  288 (352)
T ss_pred             cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC----
Confidence            3489999995442     33333321       1223334999999998887542         124688999854    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEeCCCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG  464 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S-~dgTVhIwdl~~~g  464 (787)
                         +          +.+.++.-|   ..+..|+||||++ +|.+.. .+++|.|+|+...+
T Consensus       289 ---~----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       289 ---G----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             ---C----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence               2          456666544   3589999999999 888777 58999999987643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.43  E-value=2.2e-07  Score=104.03  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      ++....--+++|+..+|+|||++||+.|.||. +||||...                  .+|.-+.+-. -+-..|++||
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS  341 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS  341 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence            44444444568999999999999999999885 99999743                  1221110000 1237899999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCCCcccC
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP  483 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~  483 (787)
                      |||+||++|+.|.-|.||.+....-...-++|.+.|..-.+-|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999986543334467776654444433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=2e-05  Score=90.08  Aligned_cols=95  Identities=24%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      ..|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....||.+...     .+        ....+ .+. |
T Consensus       272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g--------~~~~l-t~~-g  335 (433)
T PRK04922        272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GG--------SAERL-TFQ-G  335 (433)
T ss_pred             ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC--------CeEEe-ecC-C
Confidence            3688999988764 4566666666778999999999988764433455543210     01        01122 121 2


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~  462 (787)
                         ......+|||||++|+..+.++   .|.+|++..
T Consensus       336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence               1234689999999999876543   588888754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=9.3e-07  Score=96.85  Aligned_cols=122  Identities=16%  Similarity=0.278  Sum_probs=85.5

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cCC------------
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RSG------------  407 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~--~~~------------  407 (787)
                      ++.+..||++|||+..+...+..+.+|...|.+|.|||||++|||-+.+  ..+||++.....  ...            
T Consensus       159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cR  236 (398)
T KOG0771|consen  159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCR  236 (398)
T ss_pred             eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhce
Confidence            3567899999999999998889999999999999999999999999985  489999875310  000            


Q ss_pred             ---CCCC-cc-c----cCCcceEEEEE--ecc---------cc-cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          408 ---SGNH-KY-D----WNSSHVHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       408 ---~g~~-~~-~----~~~s~~~l~~l--~rG---------~~-~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                         ...+ .. .    .......++++  ..+         .. ...|.+++.|+||+++|.|+.||.|-|++......
T Consensus       237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~  315 (398)
T KOG0771|consen  237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR  315 (398)
T ss_pred             ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence               0000 00 0    00000111111  111         00 12599999999999999999999999999876544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.41  E-value=2.8e-05  Score=88.85  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      .|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+...     .+           ....+... 
T Consensus       268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~-  329 (429)
T PRK03629        268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE-  329 (429)
T ss_pred             EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence            4888999887654 444455677889999999999888876544677754221     01           11222211 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC-C--eEEEEeCCC
Q 003907          430 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP  462 (787)
Q Consensus       430 ~~a~I~slaFSpDg~~LAs~S~d-g--TVhIwdl~~  462 (787)
                       .....+.+|||||++|+..+.+ +  .+.+||+..
T Consensus       330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence             1235678999999999887654 3  466677654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.35  E-value=5.3e-06  Score=93.27  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      +...|+++++.+    +..++||.++|||+.+.+++..++.--+.+.|++|||||+|+||+++|| .+.||.+..
T Consensus       294 n~f~FS~DG~~L----A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~e  363 (636)
T KOG2394|consen  294 NEFAFSPDGKYL----ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEE  363 (636)
T ss_pred             cceeEcCCCceE----EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEecc
Confidence            334556666654    4568999999999999998888888788999999999999999999966 699999843

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=3.9e-05  Score=87.60  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~  430 (787)
                      |.++|+.++. +..+..|.......+|+|||+.|+..+..+....||.+...     .+        ..+.+ .+. |  
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~~-g--  327 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TFT-G--  327 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ecC-C--
Confidence            4444555443 44555565556678999999999887765545788876321     01        01122 222 2  


Q ss_pred             cccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907          431 SATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (787)
Q Consensus       431 ~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~  462 (787)
                       ......+|||||++|+..+.++   .|.+||+..
T Consensus       328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence             1234678999999999887665   588888865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=0.00031  Score=80.88  Aligned_cols=51  Identities=24%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~  223 (787)
                      ..|.+||+.+++......+.....+.++++  +.|+...  ++  +|+++|+.+++.
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence            479999999887644444555556778887  5666543  22  499999988763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=2.6e-05  Score=84.35  Aligned_cols=98  Identities=20%  Similarity=0.317  Sum_probs=69.9

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +..|+|||..++..+....-.-+.++-|.|||||.+|..|.-|+ ..+||+....            |.   ...+.+- 
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt---~erw~lg-  279 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WT---KERWILG-  279 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ce---ecceecc-
Confidence            56899999999887666545567899999999999999999966 5999976321            00   0112222 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                         ...|+.-+|+|+|++|.-+.... -.||.+.-.+..
T Consensus       280 ---sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~  314 (445)
T KOG2139|consen  280 ---SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGED  314 (445)
T ss_pred             ---CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCC
Confidence               23699999999999987776644 457777644433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=0.0002  Score=74.29  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-cEEEEEe---cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~---s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.+.-||+.+|+...+++.++ -|..|..   ++++|.-+-|+.+++||..|.++..+|..+.+|+..+++.   .-+.+
T Consensus       136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~---g~wig  212 (325)
T KOG0649|consen  136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW---GKWIG  212 (325)
T ss_pred             eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc---CceeE
Confidence            589999999999999999775 6777765   4477777778899999999999999999877765443221   11234


Q ss_pred             eeEEccceEEEec
Q 003907          249 PMAVGPRWLAYAS  261 (787)
Q Consensus       249 ~lAlspr~LAyas  261 (787)
                      .+|.+..||..++
T Consensus       213 ala~~edWlvCGg  225 (325)
T KOG0649|consen  213 ALAVNEDWLVCGG  225 (325)
T ss_pred             EEeccCceEEecC
Confidence            4444446665554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=1e-05  Score=91.42  Aligned_cols=56  Identities=21%  Similarity=0.408  Sum_probs=52.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      .+..++.|+++|..++.+++...+|...++++++.|+|-+|++++.|+. +++|.+.
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld  561 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD  561 (577)
T ss_pred             ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence            5678999999999999999999999999999999999999999999776 9999873

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=1.6e-05  Score=82.23  Aligned_cols=108  Identities=12%  Similarity=0.170  Sum_probs=72.8

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .+..||.+.-||+++++...++++|++-|.+++- +.+| .+.|+++||+ +||||+++......-+       +  ..-
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGt-vRvWd~kt~k~v~~ie-------~--yk~  199 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGT-VRVWDTKTQKHVSMIE-------P--YKN  199 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCcc-EEEEeccccceeEEec-------c--ccC
Confidence            3457899999999999999999999999999998 5555 4669999887 9999997631100000       0  000


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ..+.|-+....|-+++-+  ..||++|+.. .+-||.+.....
T Consensus       200 ~~~lRp~~g~wigala~~--edWlvCGgGp-~lslwhLrsse~  239 (325)
T KOG0649|consen  200 PNLLRPDWGKWIGALAVN--EDWLVCGGGP-KLSLWHLRSSES  239 (325)
T ss_pred             hhhcCcccCceeEEEecc--CceEEecCCC-ceeEEeccCCCc
Confidence            112232222346666554  5599888765 478999976543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.26  E-value=1.7e-06  Score=64.32  Aligned_cols=38  Identities=26%  Similarity=0.655  Sum_probs=35.1

Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd  398 (787)
                      +++.+|++|.++|.+|+|+|++++|||++.|+ .|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence            57889999999999999999999999999966 599997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.22  E-value=0.00016  Score=81.36  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~--IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++..  |.++|+..       +           ....+.
T Consensus       258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~  318 (417)
T TIGR02800       258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT  318 (417)
T ss_pred             ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence            3577888877653 4455555555677999999999887765433  44455421       1           122222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~  462 (787)
                      .+  ...+...+|||||++|+.++.++   .|.+||+..
T Consensus       319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            11  12356789999999999998876   677777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=0.0029  Score=69.04  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEE
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIA  447 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LA  447 (787)
                      +....+|..+|||++|..+...-..|-+|.+.+.      +          .++.-+.+-.+.+ .-.+..|+++|++|+
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            3467889999999999987764456889998653      1          1222221111222 257899999999999


Q ss_pred             EEeCC-CeEEEEeCCCCCCcccc
Q 003907          448 IVSSK-GTCHVFVLSPFGGDSGF  469 (787)
Q Consensus       448 s~S~d-gTVhIwdl~~~gg~~~~  469 (787)
                      ++..+ .+++||.+++..|....
T Consensus       307 aa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         307 AANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EEccCCCcEEEEEEcCCCceEEe
Confidence            99865 57999999987776543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.00053  Score=78.52  Aligned_cols=80  Identities=14%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (787)
                      ...+..+...+...+|||||++||..+.++  ..|.+||+..       |           ....+..+  ...+.+.+|
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w  378 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW  378 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence            344444555677889999999998876543  3588888743       2           12233222  124677999


Q ss_pred             ccCCCEEEEEeC-CC--eEEEEeCC
Q 003907          440 SHYSQWIAIVSS-KG--TCHVFVLS  461 (787)
Q Consensus       440 SpDg~~LAs~S~-dg--TVhIwdl~  461 (787)
                      +|||++|+..+. ++  .+.++++.
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECC
Confidence            999999886543 33  45555654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.18  E-value=2.3e-05  Score=89.77  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             cEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcce
Q 003907          194 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (787)
Q Consensus       194 ~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~  271 (787)
                      .|++|++.|  ..|+++.++++++||..+|.+++++.+|...             +       ..+||+-+.        
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dG--------   65 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDG--------   65 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCC--------
Confidence            788999988  5788888899999999999999999987652             1       124555321        


Q ss_pred             eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (787)
Q Consensus       272 ~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V  351 (787)
                                          .                                                .+++++.|..|
T Consensus        66 --------------------k------------------------------------------------rFASG~aDK~V   77 (1081)
T KOG1538|consen   66 --------------------K------------------------------------------------RFASGSADKSV   77 (1081)
T ss_pred             --------------------c------------------------------------------------eeccCCCceeE
Confidence                                0                                                12245678899


Q ss_pred             EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907          352 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (787)
Q Consensus       352 ~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~  430 (787)
                      .||.-.-   -..++ .|...|.||.|+|-...|||+|-.+  +-+|....                  ..+.+.+   .
T Consensus        78 I~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~k---s  131 (1081)
T KOG1538|consen   78 IIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKHK---S  131 (1081)
T ss_pred             EEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhhh---h
Confidence            9997543   23333 6999999999999999999999854  67887532                  1111111   2


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          431 SATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      .+.|.+++|..||++|+.|-.+|||.|-+
T Consensus       132 s~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen  132 SSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             heeEEEeeecCCCcEEEEeccCceEEeec
Confidence            34689999999999999999999999863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.17  E-value=3.5e-05  Score=90.00  Aligned_cols=101  Identities=17%  Similarity=0.076  Sum_probs=70.1

Q ss_pred             ccCCCceEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          344 DMDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~--------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      .+...|.|.-=+-...        +.+..+..|.++|.++.++|=+..+...+-|. .+|||.....             
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~-------------  430 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVI-------------  430 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCC-------------
Confidence            4566777765232221        23446678999999999999777665555545 5999987421             


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907          416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~  463 (787)
                         ..+++.+.+.  .+.|++++|||-- ..+|++..||++.|||+...
T Consensus       431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence               1355555442  2349999999975 67888889999999999754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.14  E-value=0.00047  Score=77.48  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=110.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEE-EEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~-sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.|.|.|.++++.+.++.....+. .+.+++  +++.|+. ++.|.++|+.+++.+.++.....|              .
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~   81 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R   81 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence            589999999999999998766654 466776  6666654 678999999999998888753322              2


Q ss_pred             eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      .+++++  |||+.+.                                                                 
T Consensus        82 ~i~~s~DG~~~~v~n-----------------------------------------------------------------   96 (369)
T PF02239_consen   82 GIAVSPDGKYVYVAN-----------------------------------------------------------------   96 (369)
T ss_dssp             EEEE--TTTEEEEEE-----------------------------------------------------------------
T ss_pred             eEEEcCCCCEEEEEe-----------------------------------------------------------------
Confidence            245544  3433321                                                                 


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                                         ..++.+.|+|..+.+++.++...       ...+.+|..+|....++.+-.+...|.+-|.
T Consensus        97 -------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   97 -------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             -------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             -------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence                               12568889999999999888653       3467899999999977777665555655565


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCC
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPF  463 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~  463 (787)
                      ...               .......+..|   ....+..|+||++|+.++ ..+..+-++|..+.
T Consensus       158 ~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  158 SDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             TTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc
Confidence            321               01222333333   236789999999987664 55778999998764

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=0.00011  Score=83.02  Aligned_cols=122  Identities=9%  Similarity=0.068  Sum_probs=68.9

Q ss_pred             ccCCCceEEEEECCCCcE-------EE---EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCC-cccCCCCC-
Q 003907          344 DMDNAGIVVVKDFVTRAI-------IS---QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPS-CMRSGSGN-  410 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~-------v~---~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~-~~~~~~g~-  410 (787)
                      +++.||+++-+|++....       ..   .....--...|++.||.. .+||.|+. +-..|+||.+.. +.....|. 
T Consensus       165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLYD~Rr~lks~~s~~~~  243 (758)
T KOG1310|consen  165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLYDRRRVLKSFRSDGTM  243 (758)
T ss_pred             EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-CchhhhhhhhhhccCCCCCccc
Confidence            467899999999976321       11   111112356789999965 46777777 667999994321 00111111 


Q ss_pred             CccccCCcceEEEE-------Eecccccc---cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          411 HKYDWNSSHVHLYK-------LHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       411 ~~~~~~~s~~~l~~-------l~rG~~~a---~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      ...+ .....++..       ..+|....   .++-++|+|+|.-|.+.=.-.-|.+|+++...++.
T Consensus       244 ~~~p-p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  244 NTCP-PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cCCC-CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            0000 000011111       12221111   25678899999887777666779999998776664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.00026  Score=81.55  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=58.8

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cc
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG  428 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG  428 (787)
                      .|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+...     .|           ....+. .+
T Consensus       287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g  349 (448)
T PRK04792        287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG  349 (448)
T ss_pred             EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence            477788877654 4455565566778999999999887764433455543211     02           112221 12


Q ss_pred             cccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG  465 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg  465 (787)
                      .   .....+|||||++|+..+. ++..+||-++..++
T Consensus       350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            1   2345799999999988766 45567766554444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=0.00014  Score=83.09  Aligned_cols=239  Identities=17%  Similarity=0.171  Sum_probs=138.8

Q ss_pred             eCC-CcEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEec
Q 003907          190 RFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS  261 (787)
Q Consensus       190 ~f~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas  261 (787)
                      +++ +.|.+|...+  ..||.|.+ +.++||.+.|+.+++++.....              ...+|++|    ..||.+-
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~--------------I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE--------------IRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce--------------eEEEEecCCCCceeEEEEe
Confidence            444 4677666655  78998775 5799999999999998874322              24566766    4455543


Q ss_pred             C-CceecCc--cee-----ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC
Q 003907          262 N-TLLLSNS--GRL-----SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS  333 (787)
Q Consensus       262 ~-~~~l~~~--g~~-----s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~  333 (787)
                      . ..++.+.  |..     .-+.+..  ......|..  .++.-.++...++-.|+.-+       +........+    
T Consensus       463 ~~~~~ivnp~~G~~~e~~~t~ell~~--~~~~~~p~~--~~~~W~~~~~~e~~~~v~~~-------I~~~k~i~~v----  527 (733)
T KOG0650|consen  463 GECVLIVNPIFGDRLEVGPTKELLAS--APNESEPDA--AVVTWSRASLDELEKGVCIV-------IKHPKSIRQV----  527 (733)
T ss_pred             cCceEEeCccccchhhhcchhhhhhc--CCCccCCcc--cceeechhhhhhhccceEEE-------EecCCcccee----
Confidence            2 2222221  211     0011110  000011111  23333344444444442201       1111111111    


Q ss_pred             ccccccccccc---cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          334 VWKVGRHAGAD---MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       334 ~~~~~~~~~~s---~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                      .|..-+-.+++   .+....|.|.++...+...-|+-..+-|.++.|+|.--+|+.|+. - .|||||+...        
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~-~vRiYdL~kq--------  597 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-R-SVRIYDLSKQ--------  597 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-c-ceEEEehhHH--------
Confidence            12111111221   123356889999888777777666788999999999999999887 3 4999998431        


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc-cccccccCCCCC
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD-SGFQTLSSQGGD  478 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~-~~~~~H~~~~~~  478 (787)
                               ..+.+|..|.  ..|..|+.+|.|.-|..++.|+.+..||+.-...+ ..++.|...+..
T Consensus       598 ---------elvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~  655 (733)
T KOG0650|consen  598 ---------ELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS  655 (733)
T ss_pred             ---------HHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence                     2334444332  26999999999999999999999999999865444 356666544333

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.06  E-value=0.00019  Score=82.46  Aligned_cols=259  Identities=15%  Similarity=0.135  Sum_probs=152.0

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ++.-|+++..+-+-|||+++ |.+...+..|...|.+|++.-+           ++  +.|.  |.              
T Consensus        23 DGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~d-----------Gk--rFAS--G~--------------   72 (1081)
T KOG1538|consen   23 DGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKD-----------GK--RFAS--GS--------------   72 (1081)
T ss_pred             CCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccC-----------Cc--eecc--CC--------------
Confidence            57778888889999999965 6688999999999999998843           23  4443  21              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYP  231 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p  231 (787)
                                       ++..|.+|+-+ .+-+-.+.+...|..+.|||  ..|+.+.-...-+|....-.    +.-+.
T Consensus        73 -----------------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~----V~K~k  130 (1081)
T KOG1538|consen   73 -----------------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS----VSKHK  130 (1081)
T ss_pred             -----------------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh----HHhhh
Confidence                             24789999964 34444455667999999999  77887766677788654321    00010


Q ss_pred             CcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccc
Q 003907          232 VPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (787)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~  309 (787)
                      .         ..  -...+++..  .|||.+-.+      |+++...-++.            -             .+.
T Consensus       131 s---------s~--R~~~CsWtnDGqylalG~~n------GTIsiRNk~gE------------e-------------k~~  168 (1081)
T KOG1538|consen  131 S---------SS--RIICCSWTNDGQYLALGMFN------GTISIRNKNGE------------E-------------KVK  168 (1081)
T ss_pred             h---------he--eEEEeeecCCCcEEEEeccC------ceEEeecCCCC------------c-------------ceE
Confidence            0         00  023355543  566665322      22221111100            0             000


Q ss_pred             ceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC--------CCcEEEEeccCCCCeEEEEECCCC
Q 003907          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFDPSG  381 (787)
Q Consensus       310 ~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~--------s~~~v~~~~aH~~pIsaLaFSpdG  381 (787)
                         +      ..|+|.++++ ++..|.+...    .+.+.++-|-|..        +|+.+..-+.-.-.-.|+.+-++|
T Consensus       169 ---I------~Rpgg~Nspi-wsi~~~p~sg----~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  169 ---I------ERPGGSNSPI-WSICWNPSSG----EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG  234 (1081)
T ss_pred             ---E------eCCCCCCCCc-eEEEecCCCC----CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence               0      1244433221 1222221110    1122233343432        123222212222233478888999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .++..|+.|+. +++|.-.        |          ..+-++  |.....|+.++..|+|++++.|..|||+--|++-
T Consensus       235 Ey~LiGGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  235 EYILLGGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cEEEEccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999998664 8888631        3          455554  2233479999999999999999999999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=1e-05  Score=91.06  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=69.6

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      ..+.|.+|++=|+||.|+.+|.+||+||+ +.-+.|||.-.                 ...++.++.|+ .+.|.++.|=
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgH-taNIFsvKFv  102 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGH-TANIFSVKFV  102 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeeccc-ccceeEEeee
Confidence            34678999999999999999999999998 55589999732                 14666777775 4679999999


Q ss_pred             cC--CCEEEEEeCCCeEEEEeCCC
Q 003907          441 HY--SQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       441 pD--g~~LAs~S~dgTVhIwdl~~  462 (787)
                      |.  .+.+++|..|..|||||++.
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEeccc
Confidence            84  47899999999999999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.03  E-value=1.7e-06  Score=100.90  Aligned_cols=96  Identities=23%  Similarity=0.374  Sum_probs=82.3

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      +.++..|..|+||...+..+++..++|.+.|+.++.+.+..++|++|. +.+||||.+..       |          .+
T Consensus       205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~p  266 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------AP  266 (1113)
T ss_pred             EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------ch
Confidence            456788999999999999999999999999999999999999999998 77899999854       3          34


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      +..| +|++ +.|++|+|||--    ++++|||+++||..
T Consensus       267 vsvL-rght-gavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  267 VSVL-RGHT-GAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHH-hccc-cceeeeccCccc----cCCCCCceEecccc
Confidence            4444 5755 459999999964    88999999999987

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.00073  Score=76.93  Aligned_cols=92  Identities=17%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      .|.+||+.+++. ..+..+........|+|||+.|+..+..+.  .|.++|+..       |.        ...+ .+ .
T Consensus       268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~-~  329 (430)
T PRK00178        268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF-V  329 (430)
T ss_pred             eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-C
Confidence            577888887764 345556556667899999998887775443  344455532       20        1122 11 1


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC-C--eEEEEeCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP  462 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~d-g--TVhIwdl~~  462 (787)
                      +   ......+|||||++|+..+.+ +  .+.+||+..
T Consensus       330 ~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        330 G---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             C---CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            2   113457899999999988754 3  356666654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.01  E-value=0.00086  Score=81.99  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             CCceEEEEECCCCcEEEEec-cCCCCeEEEEECCC---CCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          347 NAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS---GTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpd---G~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      ..|.+.+||++-+.++.... +|..+|..|+.+|-   ....++++. --+-+-+|++....     +. ..-|.+....
T Consensus      1215 s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-----~~-~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-----RQ-TVLWASDGAP 1288 (1431)
T ss_pred             CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----ce-EEEEcCCCCc
Confidence            34678899999888877664 45588888887763   345666555 33458999986521     10 0000000000


Q ss_pred             E--EEEe----cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          422 L--YKLH----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       422 l--~~l~----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .  +.+-    +....-....+++..-+.++.+|+.|..|+.||....
T Consensus      1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            0  0000    0000001223455555678999999999999998654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.01  E-value=0.0016  Score=71.24  Aligned_cols=241  Identities=15%  Similarity=0.131  Sum_probs=123.3

Q ss_pred             CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      .+|.+-|+.+.+-+-.....   +.||.+..+|  ++|++.. ++.|-+||++.-+....+....+        .+.+  
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--------~~~~--  196 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--------SGKN--  196 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--------CCcc--
Confidence            58999999999888777654   4899999988  6777755 55799999887653222221111        0011  


Q ss_pred             cceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          247 YGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       247 ~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                      +-..-|.|   ++||.+....     |.-.|+...+. .+          +-++          |.-+.|        |.
T Consensus       197 F~t~~F~P~~P~Li~~~~~~~-----G~~~~D~R~~~-~~----------~~~~----------~~~~~L--------~~  242 (609)
T KOG4227|consen  197 FYTAEFHPETPALILVNSETG-----GPNVFDRRMQA-RP----------VYQR----------SMFKGL--------PQ  242 (609)
T ss_pred             ceeeeecCCCceeEEeccccC-----CCCceeecccc-ch----------HHhh----------hccccC--------cc
Confidence            22344444   7888876531     22223332220 00          0000          000111        10


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH------~~pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                      ....-+  ..-|.+.+.++...-..-.-.+||+.+.++ +.++...      ...|.+++|--|-+ +||+|+ .-.|.+
T Consensus       243 ~~~~~M--~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-~~~i~~  318 (609)
T KOG4227|consen  243 ENTEWM--GSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-HWGIHI  318 (609)
T ss_pred             cchhhh--heeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-ccceEE
Confidence            000000  000111111111111112234677776443 2233211      23577889976544 889988 455999


Q ss_pred             EeCCCCcccCC---CCCC--ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          397 FRIMPSCMRSG---SGNH--KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       397 Wdi~~~~~~~~---~g~~--~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      |.+-......+   -|..  .....--...-....||+ ...+..+.|+|-..+|++++-...++||.-..
T Consensus       319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             EecCCCccccCccccCcchhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccccc
Confidence            99833211111   0100  000000011122334563 45688899999999999999999999997543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.99  E-value=2.7e-05  Score=86.42  Aligned_cols=270  Identities=21%  Similarity=0.255  Sum_probs=159.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .++-|++|.+.| +--+|.-. .++..-+.-. ..|+.+++|             ++..++|| +          |    
T Consensus       140 nGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v~-Etv~Dv~~L-------------Hneq~~AV-A----------Q----  189 (545)
T KOG1272|consen  140 NGRHLLLGGRKGHLAAFDWVT-KKLHFEINVM-ETVRDVTFL-------------HNEQFFAV-A----------Q----  189 (545)
T ss_pred             CccEEEecCCccceeeeeccc-ceeeeeeehh-hhhhhhhhh-------------cchHHHHh-h----------h----
Confidence            467777777777 88888854 4443333322 357888877             33346776 1          2    


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEE-Ee-CCeEEEEECCCCceeEEEEe
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAV-GL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV-~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                                         .+-+.||| ..|.++|-|+-+..|..+.|-| .+|.| +. .+.++--|+.+|++...+.+
T Consensus       190 -------------------K~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t  249 (545)
T KOG1272|consen  190 -------------------KKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT  249 (545)
T ss_pred             -------------------hceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc
Confidence                               25788999 5799999999999999999988 44444 33 34688889999998777765


Q ss_pred             cCCcccCCCCccccccccceeEEcc-c-eEEEecCCceecCcceec-cccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGP-R-WLAYASNTLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlsp-r-~LAyas~~~~l~~~g~~s-~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      -..+             ...|.-.| + -+-.+...      |+++ |.            |...        +....  
T Consensus       250 ~~G~-------------~~vm~qNP~NaVih~Ghsn------GtVSlWS------------P~sk--------ePLvK--  288 (545)
T KOG1272|consen  250 GAGR-------------TDVMKQNPYNAVIHLGHSN------GTVSLWS------------PNSK--------EPLVK--  288 (545)
T ss_pred             cCCc-------------cchhhcCCccceEEEcCCC------ceEEecC------------CCCc--------chHHH--
Confidence            3221             12233333 1 12222211      2221 11            1100        00000  


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT  386 (787)
                        +          ++..+.++++...+.+++.    ++++.|..|+|||++.-..+.++.. ..+...++||..|. | .
T Consensus       289 --i----------LcH~g~V~siAv~~~G~YM----aTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-L-A  349 (545)
T KOG1272|consen  289 --I----------LCHRGPVSSIAVDRGGRYM----ATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-L-A  349 (545)
T ss_pred             --H----------HhcCCCcceEEECCCCcEE----eecccccceeEeeeccccccceeec-CCCccccccccccc-e-e
Confidence              0          0112234445555555443    4567789999999998765555544 45788999998773 3 3


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +|. |..+.||.-.-    ++++        .....|--++  ..+.|.++.|.|--..|.+|-..|--.|  |-|..|+
T Consensus       350 ~~~-G~~v~iw~d~~----~~s~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGe  412 (545)
T KOG1272|consen  350 LSY-GDHVQIWKDAL----KGSG--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGE  412 (545)
T ss_pred             eec-CCeeeeehhhh----cCCC--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCCC
Confidence            555 66799996321    1011        0112222111  2347999999999999999988886655  3466666


Q ss_pred             cccc
Q 003907          467 SGFQ  470 (787)
Q Consensus       467 ~~~~  470 (787)
                      +++.
T Consensus       413 PN~D  416 (545)
T KOG1272|consen  413 PNYD  416 (545)
T ss_pred             CCcc
Confidence            6553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.99  E-value=0.00016  Score=77.57  Aligned_cols=185  Identities=21%  Similarity=0.273  Sum_probs=121.3

Q ss_pred             CCCeEEEEEecCcEEEEEccCCCceeEeee---e-c---cCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCC
Q 003907           73 VFKQVLLLGYQNGFQVLDVEDASNFNELVS---K-R---DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA  145 (787)
Q Consensus        73 ~~~~vL~lG~~~G~qVWdv~~~~~~~ells---~-~---dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~  145 (787)
                      .++.-|..||++-|+|||+.-.|...+...   + .   .|-+.++++.|.-          .+  ++|+  +.      
T Consensus       168 ~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~----------~~--~~a~--gs------  227 (406)
T KOG2919|consen  168 PDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD----------SK--TLAV--GS------  227 (406)
T ss_pred             CCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC----------Cc--ceee--ec------
Confidence            367899999999999999966664434332   2 1   2556777777631          22  6665  21      


Q ss_pred             CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe--CCeEEEEECCC
Q 003907          146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALT  220 (787)
Q Consensus       146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T  220 (787)
                                               ..+++-||....+..+..|-.+ +-|.-+++.+  +.|.+|.  +++|-+||++.
T Consensus       228 -------------------------Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  228 -------------------------YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             -------------------------ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence                                     1257788888888888877654 6899999977  6777765  46899999875


Q ss_pred             Cc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeeh
Q 003907          221 LE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (787)
Q Consensus       221 ~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~  299 (787)
                      -+ .++.|..|-.                           -.++-++.       +                        
T Consensus       283 ~~~pv~~L~rhv~---------------------------~TNQRI~F-------D------------------------  304 (406)
T KOG2919|consen  283 SRDPVYALERHVG---------------------------DTNQRILF-------D------------------------  304 (406)
T ss_pred             ccchhhhhhhhcc---------------------------CccceEEE-------e------------------------
Confidence            32 2222221100                           00110000       0                        


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEEC
Q 003907          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFD  378 (787)
Q Consensus       300 d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFS  378 (787)
                                          +-|.+               .-+++++++|.|++||+.+ +..+..+..|..-++.++++
T Consensus       305 --------------------ld~~~---------------~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln  349 (406)
T KOG2919|consen  305 --------------------LDPKG---------------EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN  349 (406)
T ss_pred             --------------------cCCCC---------------ceeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence                                00000               0123567899999999998 66788899999999999999


Q ss_pred             CCCCEEEEEEcCCCEEEEEeC
Q 003907          379 PSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       379 pdG~lLATaS~dG~~IrVWdi  399 (787)
                      |-=.+|||+|  |.  |+|..
T Consensus       350 P~mpilatss--Gq--r~f~~  366 (406)
T KOG2919|consen  350 PIMPILATSS--GQ--RIFKY  366 (406)
T ss_pred             cccceeeecc--Cc--eeecC
Confidence            9988899987  43  77765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.94  E-value=3.3e-05  Score=92.63  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +.+..-|.|.+|+....+....+.+|.+.|.++.|+-||+++||+|+ ++.+|+|++.+...                ..
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~~----------------~~  211 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSREV----------------LG  211 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeecccccc----------------cC
Confidence            44556789999999854444468999999999999999999999999 66799999965211                00


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ... -| |.+.|+.++|.|.  .|++++.|-|+++|+.+
T Consensus       212 ~~~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  212 CTG-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccc-cc-ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            111 13 4578999999998  89999999999999654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.94  E-value=0.014  Score=73.00  Aligned_cols=97  Identities=14%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..++||+-. |.+..+-..-.+-=.+|+|-|+|.++|+.-..  ...|..|.=      ||..          +--+.++
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------NGLr----------hgeF~l~  299 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------NGLR----------HGEFTLR  299 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------CCcE----------eeeEecC
Confidence            589999965 55444433322333478999999999998762  234555652      2221          2234454


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .......|..|+|++||..||+.-.|. |.+|-...|
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            322334699999999999999988665 999998876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.00055  Score=77.92  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=92.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC---CeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~---~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      -+++.+++.+..+++..|.-.++|+++.||+  +-++|+..   .++.|||+. ++.++.+-.-|               
T Consensus       250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egp---------------  313 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGP---------------  313 (566)
T ss_pred             cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCC---------------
Confidence            4789999999778888888889999999998  55776553   469999965 33444433211               


Q ss_pred             cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      .+.+-++|  ++|+.+|-                                                              
T Consensus       314 RN~~~fnp~g~ii~lAGF--------------------------------------------------------------  331 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGF--------------------------------------------------------------  331 (566)
T ss_pred             ccceEECCCCCEEEEeec--------------------------------------------------------------
Confidence            23444555  45544441                                                              


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEeC
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI  399 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-----G~~IrVWdi  399 (787)
                                          +.-.|.+-|||+.+.+.+..+.+-..  +-..|+|||.+++||..-     ++.|+||+.
T Consensus       332 --------------------GNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  332 --------------------GNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             --------------------CCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence                                12357899999999999999987654  446899999999999763     445899997

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.014  Score=66.75  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=36.9

Q ss_pred             EEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCc
Q 003907          174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE  222 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e  222 (787)
                      .|.++|+.+|+...-..+.+.+...++++  +.|+....    .+|+++|+.+++
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            79999999998766666777777777887  56665443    369999988776

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.84  E-value=0.00019  Score=80.56  Aligned_cols=100  Identities=20%  Similarity=0.319  Sum_probs=73.8

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..+|.|.|.|..+.+.+..|..+..+-..++|+|||+++..++.|| .|.++|+..       +          +.+.++
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i   74 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI   74 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence            4578999999999999999987655545688999999999999876 599999964       2          466777


Q ss_pred             ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCc
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD  466 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~  466 (787)
                      +-|.   .-.++++|+||++|+++. ..+++.|+|..+.+-.
T Consensus        75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            7664   357899999999999886 5899999998775433

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.83  E-value=0.055  Score=60.10  Aligned_cols=104  Identities=23%  Similarity=0.379  Sum_probs=64.5

Q ss_pred             eEEEEECCCCc--E--EEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          350 IVVVKDFVTRA--I--ISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       350 ~V~IwDl~s~~--~--v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      .|.+|++....  +  ...+.. ....-..|+|+|+|+++....+....|.+|++.+.     .|        ....+..
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g--------~~~~~~~  233 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DG--------SLTEIQT  233 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEEEE
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CC--------ceeEEEE
Confidence            56677765543  2  222322 22345789999999999999888888999998521     02        1122222


Q ss_pred             Ee---cccccc-cEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCc
Q 003907          425 LH---RGITSA-TIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD  466 (787)
Q Consensus       425 l~---rG~~~a-~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~  466 (787)
                      ..   .+.... .-..|++||||++|.++. ..++|.+|++++..+.
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            21   121111 468899999999988876 4678999999765443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.83  E-value=0.00038  Score=83.87  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=80.1

Q ss_pred             ccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +.+.|.++++|++.+.+... +.-+|+..|..++|+|+  +++|+++|- +.|+|+..        +          ..+
T Consensus       192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~--------~----------~~l  250 (967)
T KOG0974|consen  192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVN--------G----------TQL  250 (967)
T ss_pred             EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecc--------c----------cee
Confidence            44668899999999988665 66689999999999998  999999954 59999763        2          122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      -++ +++....|+.++..++.-++.++++|+++++|++...+-+.
T Consensus       251 ~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~  294 (967)
T KOG0974|consen  251 EVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG  294 (967)
T ss_pred             hhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc
Confidence            222 23233459999999999999999999999999998655443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.0015  Score=74.60  Aligned_cols=220  Identities=14%  Similarity=0.156  Sum_probs=131.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      ++|.|-. + +-...+++.+..-.++..+.   .++++|....||-+++..|+-+.-+.+...             +.+.
T Consensus       116 R~IefHa-k-~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-------------~lN~  180 (703)
T KOG2321|consen  116 RTIEFHA-K-YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-------------ELNV  180 (703)
T ss_pred             ceeeehh-h-cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc-------------ccee
Confidence            5565533 2 22334455555555666544   788888888999999999987776664322             1456


Q ss_pred             eEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC--
Q 003907          250 MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS--  325 (787)
Q Consensus       250 lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s--  325 (787)
                      +.+.+  -+||+++.+..+     --|+.....            .++..  |    ++..+    .     -.|...  
T Consensus       181 v~in~~hgLla~Gt~~g~V-----EfwDpR~ks------------rv~~l--~----~~~~v----~-----s~pg~~~~  228 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVV-----EFWDPRDKS------------RVGTL--D----AASSV----N-----SHPGGDAA  228 (703)
T ss_pred             eeecCccceEEecccCceE-----EEecchhhh------------hheee--e----ccccc----C-----CCcccccc
Confidence            77777  678888754321     124432210            00000  0    00000    0     011111  


Q ss_pred             --CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCCeEEEEECCC--CCEEEEEEcCCCEEEEEeC
Q 003907          326 --SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS--GTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       326 --~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi  399 (787)
                        ..++.|+.    .+..++.+..+|.|.|||+++.+++. ++.|  ..||..+.|.+.  +..|+|+  |-+.++|||-
T Consensus       229 ~svTal~F~d----~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~  301 (703)
T KOG2321|consen  229 PSVTALKFRD----DGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE  301 (703)
T ss_pred             CcceEEEecC----CceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence              12233322    24455667889999999999987653 3445  569999999876  4556555  4567999996


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      .+       |          .......   ....|.++||=|++-++.++-.+..++.|=+...|..
T Consensus       302 ~~-------G----------k~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPa  348 (703)
T KOG2321|consen  302 CT-------G----------KPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPA  348 (703)
T ss_pred             cc-------C----------Cceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCCC
Confidence            43       3          1221111   2235899999999999999999999999888765543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00097  Score=73.14  Aligned_cols=57  Identities=16%  Similarity=0.268  Sum_probs=50.1

Q ss_pred             ccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      .+..-|.+..||++.++.+.. |++-++.|++|--+|++.+||+|+- |+.+||||+.+
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt  321 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT  321 (412)
T ss_pred             EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence            345667888999999988776 8899999999999999999999999 67799999965

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=0.0001  Score=79.99  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=61.5

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      ++| .+|++|.+++||+.|+|||-++..|+|||...       |.        ..++..  +|.  ..+.-+.|||||.+
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd~  252 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGDV  252 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCCE
Confidence            355 69999999999999999999999999999854       21        133332  221  24788999999999


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 003907          446 IAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~  462 (787)
                      |.+++-|++.+||..+.
T Consensus       253 lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQ  269 (445)
T ss_pred             EEEecccceeeeehhcc
Confidence            99999999999997653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.80  E-value=0.002  Score=69.72  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cc-----ccccc---EEEE
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSAT---IQDI  437 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG-----~~~a~---I~sl  437 (787)
                      -..|+.+.|+++|+|++|-+- - +++|||+.-.      ..        ....+..+   |-     ..+..   =..+
T Consensus       272 IsSISDvKFs~sGryilsRDy-l-tvk~wD~nme------~~--------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSRDY-L-TVKLWDLNME------AK--------PVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             hhhhhceEEccCCcEEEEecc-c-eeEEEecccc------CC--------cceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            457899999999999998765 3 5999998321      10        01112111   10     00111   2468


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +||-|+.++++||.....|+|++..
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCC
Confidence            9999999999999999999999664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.0018  Score=74.24  Aligned_cols=76  Identities=21%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      .....+|||||+.||..+..+...+||.+...    ..+          .....+..+  ...+.+.+|||||++|+..+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence            34567999999999887754433567754210    001          011222211  12467889999999999876


Q ss_pred             CC---CeEEEEeCCC
Q 003907          451 SK---GTCHVFVLSP  462 (787)
Q Consensus       451 ~d---gTVhIwdl~~  462 (787)
                      .+   ..|++||+..
T Consensus       346 ~~~g~~~I~v~dl~~  360 (428)
T PRK01029        346 VIKGVRQICVYDLAT  360 (428)
T ss_pred             cCCCCcEEEEEECCC
Confidence            54   3577887754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.76  E-value=0.00029  Score=79.51  Aligned_cols=85  Identities=15%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      |.+.|--+.-...+-..++|++-|.++.|++...+++||++|= ..+|||-.        |          ..++.-.  
T Consensus       166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~-kfKvWD~~--------G----------~~Lf~S~--  224 (737)
T KOG1524|consen  166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF-RFKIWDAQ--------G----------ANLFTSA--  224 (737)
T ss_pred             CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCce-eEEeeccc--------C----------cccccCC--
Confidence            3444545544555667789999999999999999999999955 59999962        4          3454422  


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEE
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCH  456 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVh  456 (787)
                      .+...|++++|.|| +.++.+|. .|.+
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSY-NTAR  250 (737)
T ss_pred             hhccceeeeeeccc-cceeeeee-eeee
Confidence            23346999999999 66777765 3555

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.67  E-value=0.00016  Score=53.57  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      ++..++ | +...|++|+|+|++++|++++.|++|+|||
T Consensus         3 ~~~~~~-~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFR-G-HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-S-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEc-C-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            455564 4 345799999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.63  E-value=0.00066  Score=72.97  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----------------------------------
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----------------------------------  390 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-----------------------------------  390 (787)
                      +.+-.|.||.+.+.+.. .++--...+..++|+|||++.|-++..                                   
T Consensus       111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            34557888888776543 232223455778888998888887652                                   


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      |..+-|||.--                 ..+++...||.   -|..++|||-+++||+|+.|+.++|.+
T Consensus       190 g~~laVwd~~L-----------------eykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  190 GNWLAVWDNVL-----------------EYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             CcEEEEecchh-----------------hheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence            33334444210                 02344455553   388899999999999999999998843

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.60  E-value=0.0016  Score=70.59  Aligned_cols=103  Identities=17%  Similarity=0.338  Sum_probs=77.5

Q ss_pred             cCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          345 MDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       345 ~~~dG~V~IwD--l~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ++..|.|.+-.  ...-.++.++.+|.++|.+++|+|...+|.+++. ++.+.+||+-        |.        ....
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig--------g~--------~g~~  233 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG--------GR--------KGTA  233 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc--------CC--------ccee
Confidence            44555555433  3445688999999999999999999999999998 6679999992        11        0244


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +++.+  ++..|+.++.-+--+.|.+++.||-|-+|+++-...+
T Consensus       234 ~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  234 YELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             eeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence            66654  3456787877777889999999999999999865433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.00058  Score=76.55  Aligned_cols=297  Identities=15%  Similarity=0.144  Sum_probs=162.0

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..++|++-|.-+.|++       .+.+|+.|.++- +-|||.........-.++|...|...+|+|          |.+.
T Consensus       137 kL~~H~GcVntV~FN~-------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d  199 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ-------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD  199 (559)
T ss_pred             cccCCCCccceeeecc-------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence            4678999999999987       367999999874 899999765555666788888899889998          7777


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEE---EeCCCcEEEEEecC---
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHV---LRFRSSVCMVRCSP---  202 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-tg~~v~t---L~f~s~V~sV~~s~---  202 (787)
                      ++++ ..+.                   |              +.|++=.+. ++.+..+   -+++++|.-++.-|   
T Consensus       200 ~ti~-~~s~-------------------d--------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  200 RTIV-TSSR-------------------D--------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             cCce-eccc-------------------c--------------CceeeeeeccccceecceecccccCccceeeecCCCC
Confidence            7763 2221                   1              123332221 2322222   24567777776644   


Q ss_pred             CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceec-CcceeccccC
Q 003907          203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLS-NSGRLSPQNL  277 (787)
Q Consensus       203 ~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~-~~g~~s~q~l  277 (787)
                      +-+. .|-+..+.=+|+.+...--.+.+-.+...       ..+++..+|+.|   ..+|.++.+-..- -.++. .+.-
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~-~~~e  317 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR-IDKE  317 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCc-------cceeeeeEecCCCCccccccCChhhhhhhhcccc-hhhc
Confidence            4444 45555677788876653333332111100       012355677776   4667766542110 00000 0000


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC-CCC--CCCcccCCccccccccccccCCCceEEEE
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVK  354 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p-~~s--~~~~s~s~~~~~~~~~~~s~~~dG~V~Iw  354 (787)
                                +.+|                 .   +.+.|..-+- +..  ...+.++    ..+.-+...-.|-.|.++
T Consensus       318 ----------~~n~-----------------~---~~~f~p~hl~~d~~v~ITgl~Ys----h~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  318 ----------ENNG-----------------V---LDKFCPHHLVEDDPVNITGLVYS----HDGSELLASYNDEDIYLF  363 (559)
T ss_pred             ----------cccc-----------------h---hhhcCCccccccCcccceeEEec----CCccceeeeecccceEEe
Confidence                      0000                 0   0111111000 000  0000000    000000111233344444


Q ss_pred             ECC--CC----------cEEEE-eccCCC--CeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          355 DFV--TR----------AIISQ-FKAHTS--PISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       355 Dl~--s~----------~~v~~-~~aH~~--pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      .-.  .+          ..+.. .++|..  .|-.+-| -|...++++||+-|+ |-||+-+.       +         
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t-------~---------  426 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKT-------G---------  426 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecch-------h---------
Confidence            211  11          22233 788854  4666665 788999999999787 99999643       2         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                       +++ .+..|.. ..|.||-=.|---.||+++-|.-|+||.-
T Consensus       427 -eii-~~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  427 -EII-RFMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             -HHH-HHhhccc-ceEeccCCCCCCchhhccCCccceeeecC
Confidence             232 2333433 37899998898889999999999999964

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0073  Score=69.37  Aligned_cols=97  Identities=21%  Similarity=0.368  Sum_probs=77.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +.+.|+.+..|+...+..++.+++-+..+.+++.+|||..|++||.   .|++||+.+       +          +.+.
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~  178 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI  178 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence            4567899999999999999999999999999999999999999986   699999965       2          3344


Q ss_pred             EEecccccccEEEEEEccC-----CCEEEEE-eCCCeEEEEeCCC
Q 003907          424 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP  462 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpD-----g~~LAs~-S~dgTVhIwdl~~  462 (787)
                      .| .| |...|.+++|-.+     |.++.++ ..+.-+.+|-+..
T Consensus       179 ~f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  179 TF-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Ee-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            44 45 4568999999887     6665554 4455577887765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.55  E-value=0.053  Score=61.17  Aligned_cols=192  Identities=19%  Similarity=0.178  Sum_probs=109.7

Q ss_pred             cccccceecccCCCCCCCcEEEEEEe-eccCC--------C--------CCCCeEEEEEecCcEEEEEccCCCceeEeee
Q 003907           40 AGASVAASISNASEDLKDQVTWAGFD-RLEYG--------P--------SVFKQVLLLGYQNGFQVLDVEDASNFNELVS  102 (787)
Q Consensus        40 ~~~s~~~~~~~~~~~~~~~v~wa~Fd-~l~~~--------~--------~~~~~vL~lG~~~G~qVWdv~~~~~~~ells  102 (787)
                      +.-+.||.|+. .+.++|.+.-.-.+ -++-.        +        -..+..+++-+++..-|.+... +-+  +--
T Consensus       281 IvFq~~GdIyl-ydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-~~~--iqv  356 (668)
T COG4946         281 IVFQNAGDIYL-YDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-GYS--IQV  356 (668)
T ss_pred             EEEecCCcEEE-eCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC-Cee--EEc
Confidence            34578999998 77777776644443 11100        0        0235667776676644444321 111  222


Q ss_pred             eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC
Q 003907          103 KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS  182 (787)
Q Consensus       103 ~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt  182 (787)
                      .+.|.|+..+++-+|.             -+++..-|                   |             -.|-|||..+
T Consensus       357 ~~~~~VrY~r~~~~~e-------------~~vigt~d-------------------g-------------D~l~iyd~~~  391 (668)
T COG4946         357 GKKGGVRYRRIQVDPE-------------GDVIGTND-------------------G-------------DKLGIYDKDG  391 (668)
T ss_pred             CCCCceEEEEEccCCc-------------ceEEeccC-------------------C-------------ceEEEEecCC
Confidence            4556699888875542             12221111                   1             2789999998


Q ss_pred             CeEEEEEeCCCcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceE
Q 003907          183 HCYEHVLRFRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL  257 (787)
Q Consensus       183 g~~v~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~L  257 (787)
                      ++.-.-.+--+.|.+|..++  +.++++.+. +|.++|+.|+.. +.+.-..-      +      -..-++++|  ||+
T Consensus       392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~------~------lItdf~~~~nsr~i  458 (668)
T COG4946         392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEY------G------LITDFDWHPNSRWI  458 (668)
T ss_pred             ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEeccccc------c------eeEEEEEcCCceeE
Confidence            88655555568999999988  577777764 689999999863 22221110      0      124578888  999


Q ss_pred             EEecCCc------eecC-cceeccccCCC--CCcCCCcCCCCCce
Q 003907          258 AYASNTL------LLSN-SGRLSPQNLTP--SGVSPSTSPGGSSL  293 (787)
Q Consensus       258 Ayas~~~------~l~~-~g~~s~q~lt~--~~~s~s~sp~~g~l  293 (787)
                      ||+-...      .+.+ .|....+.-++  ...+|+|.|++.-|
T Consensus       459 AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         459 AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence            9974322      1111 12112233333  56678887776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.50  E-value=0.058  Score=68.64  Aligned_cols=82  Identities=10%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~--~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      ..|+|+++|+++++-+. ++.|++||.......  .+.|...+. +  ...   . .+ .-.....|++++||+.+++-+
T Consensus       807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~-d--G~~---~-~a-~l~~P~GIavd~dG~lyVaDt  877 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFK-D--GKA---L-KA-QLSEPAGLALGENGRLFVADT  877 (1057)
T ss_pred             ceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEeccCCcCCC-C--Ccc---c-cc-ccCCceEEEEeCCCCEEEEEC
Confidence            47899999998777665 566999998531100  000000000 0  000   0 00 001367899999999999999


Q ss_pred             CCCeEEEEeCCCC
Q 003907          451 SKGTCHVFVLSPF  463 (787)
Q Consensus       451 ~dgTVhIwdl~~~  463 (787)
                      .+++|++||++..
T Consensus       878 ~Nn~Irvid~~~~  890 (1057)
T PLN02919        878 NNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCEEEEEECCCC
Confidence            9999999999764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.48  E-value=0.002  Score=73.60  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=77.3

Q ss_pred             eEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907           76 QVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (787)
Q Consensus        76 ~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~  155 (787)
                      -++++|...-+--+|++ .|.+..-+....+++.+|.|.|-             +.|||.  |..               
T Consensus       147 Dly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~-------------hgLla~--Gt~---------------  195 (703)
T KOG2321|consen  147 DLYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEE-------------HGLLAC--GTE---------------  195 (703)
T ss_pred             cEEEeecCcceEEEEcc-ccccccccccccccceeeeecCc-------------cceEEe--ccc---------------
Confidence            36777777777777885 47777777777799999998852             336643  211               


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc------------EEEEEecC--CeEEEEeC-CeEEEEECCC
Q 003907          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSP--RIVAVGLA-TQIYCFDALT  220 (787)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~------------V~sV~~s~--~~LaV~~~-~~I~iwD~~T  220 (787)
                                      .++|.+||.++.+.+.+|...+.            |.+|.|+.  -.++||.. +.|+|||+++
T Consensus       196 ----------------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  196 ----------------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             ----------------CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence                            26899999999999999986554            89999977  35777764 5799999998


Q ss_pred             CceeE
Q 003907          221 LENKF  225 (787)
Q Consensus       221 ~e~l~  225 (787)
                      -+.+.
T Consensus       260 ~~pl~  264 (703)
T KOG2321|consen  260 SKPLL  264 (703)
T ss_pred             CCcee
Confidence            76543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.45  E-value=0.15  Score=52.44  Aligned_cols=209  Identities=17%  Similarity=0.115  Sum_probs=112.7

Q ss_pred             CEEEEEECCCCeEEEEEeCC---CcEE-EEEecCCeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR---SSVC-MVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~---s~V~-sV~~s~~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++|..||.++|+.+.+..+.   .... ......+.|.++ .++.|++||+.|++.+++... +.+-           ..
T Consensus         3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~-----------~~   70 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPI-----------SG   70 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCG-----------GS
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccc-----------cc
Confidence            58999999999999999863   2233 222244445554 677899999999999888875 2210           01


Q ss_pred             ceeEEccceE-EEecCCceec--Ccceecccc-CCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          248 GPMAVGPRWL-AYASNTLLLS--NSGRLSPQN-LTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       248 ~~lAlspr~L-Ayas~~~~l~--~~g~~s~q~-lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                      .++..+.+.+ +.........  .+|...|+. ... +....                                      
T Consensus        71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--------------------------------------  112 (238)
T PF13360_consen   71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV--------------------------------------  112 (238)
T ss_dssp             GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST--------------------------------------
T ss_pred             eeeecccccccccceeeeEecccCCcceeeeecccccccccc--------------------------------------
Confidence            1211121221 2211111111  234444441 211 00000                                      


Q ss_pred             CCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC----------e-EEEEECCCCCEEEEEEcCC
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP----------I-SALCFDPSGTLLVTASVYG  391 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~p----------I-saLaFSpdG~lLATaS~dG  391 (787)
                         ......    ...+..+..+..+|.|..+|+.+++.+.....+..+          + ..+.++ +| .+..++.+|
T Consensus       113 ---~~~~~~----~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g  183 (238)
T PF13360_consen  113 ---RSSSSP----AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG  183 (238)
T ss_dssp             ---B--SEE----EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred             ---ccccCc----eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence               000000    000111223344899999999999998888765433          1 233343 55 444455557


Q ss_pred             CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       392 ~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ..+.+ |+..       |          ..+++..  ..  .+.. ....++..|++++.++++..||+.+.
T Consensus       184 ~~~~~-d~~t-------g----------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  184 RVVAV-DLAT-------G----------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             SEEEE-ETTT-------T----------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             eEEEE-ECCC-------C----------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence            66677 8854       3          3344322  11  1222 25678888888889999999998763

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.066  Score=61.54  Aligned_cols=115  Identities=11%  Similarity=0.169  Sum_probs=80.4

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      .++.+.++....++..+. -.+||.+++|+|+|+-++.+- ---..+-|||++        |          ..++.+-.
T Consensus       251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e  311 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE  311 (566)
T ss_pred             ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence            467777777444444443 368999999999999887652 112348899984        3          47778766


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCCCCCccccccccCCCCCCcccCCCCCCccccCCCCCcCCcC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV  502 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~  502 (787)
                      |..    .++-|+|.|++|+.++.+   |.+-|||+..++....+..                +|....+|+++.+.+
T Consensus       312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----------------~~tt~~eW~PdGe~f  369 (566)
T KOG2315|consen  312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----------------ANTTVFEWSPDGEYF  369 (566)
T ss_pred             CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc----------------CCceEEEEcCCCcEE
Confidence            643    458899999999999875   7899999998766554432                223345677777665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0059  Score=70.11  Aligned_cols=53  Identities=21%  Similarity=0.449  Sum_probs=45.0

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEeCC
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd-----G~lLATaS~dG~~IrVWdi~  400 (787)
                      .+.|++||+.+++.+.+|.+|.++|++++|--+     |.++.+...-++.|.+|-+.
T Consensus       163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            468999999999999999999999999999877     77777665556668888763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.35  E-value=0.0034  Score=67.59  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             CCCceEEEEECCC-C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          346 DNAGIVVVKDFVT-R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       346 ~~dG~V~IwDl~s-~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .+|....||.... +  ++.-.|..|.....++.|+|.++.+|++|. ++.|-||-.+..          .+|=-+ .|+
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs-Khi  141 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS-KHI  141 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh-hhh
Confidence            3444445555522 2  233345677889999999999999999998 888999876421          122100 122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      .+-    ....|.+++|.|++-.||+||.|+.++||..
T Consensus       142 kkP----irStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  142 KKP----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             CCc----cccceeeeeccCCcceecccccCcceeEEEE
Confidence            221    2346999999999999999999999999975

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.28  E-value=0.0069  Score=72.54  Aligned_cols=184  Identities=15%  Similarity=0.166  Sum_probs=127.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      ...+..+|+++.++.+.....+ .|.=++-|.+.|.+|. .++|.+-|..+.+.++++.+|...             ...
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD  222 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD  222 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence            3578889999999998888765 6888888888888875 467999999999999999988762             233


Q ss_pred             eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (787)
Q Consensus       250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~  329 (787)
                      +.+.-+.|+..|...      +.                                           |             
T Consensus       223 fDv~GNlLitCG~S~------R~-------------------------------------------~-------------  240 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSM------RR-------------------------------------------Y-------------  240 (1118)
T ss_pred             eeccCCeEEEeeccc------cc-------------------------------------------c-------------
Confidence            455445565555310      00                                           0             


Q ss_pred             ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                    .-.-|--|+|||++..+.+.-+.-|.+| .-+.|.|. -+.||.+|..|. ..+-|....      
T Consensus       241 --------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------  298 (1118)
T KOG1275|consen  241 --------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------  298 (1118)
T ss_pred             --------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc------
Confidence                          0123667999999998888777777777 66889886 446777777676 666663211      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      +.      +. ..++-.  .....-|..+.+|+.|+.||.+..+|.||+|.=.
T Consensus       299 sN------P~-~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  299 SN------PP-AGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CC------Cc-cceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            10      00 011111  1112238999999999999999999999999843

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.029  Score=64.30  Aligned_cols=291  Identities=11%  Similarity=0.131  Sum_probs=151.1

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      .|..|++=-+.|+++|--++-+.++..   -.-.|.++.++|+-             .+|+.-+....  .         
T Consensus       221 ~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp~Vq~idfSP~E-------------kYLVT~s~~p~--~---------  273 (698)
T KOG2314|consen  221 KGTYLVTFHKQGIALWGGESFDRIQRF---YHPGVQFIDFSPNE-------------KYLVTYSPEPI--I---------  273 (698)
T ss_pred             CceEEEEEeccceeeecCccHHHHHhc---cCCCceeeecCCcc-------------ceEEEecCCcc--c---------
Confidence            578888888899999987664433322   23459999999852             25543222110  0         


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----cEEEEEecCCeEEEEeCCeEEEEECCCCceeEEE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSV  227 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s-----~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl  227 (787)
                        +..+..         -+..++|||+++|...+.+.. .+     ++..=..+.+++|--..+.|.||+...+.++.  
T Consensus       274 --~~~~d~---------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld--  340 (698)
T KOG2314|consen  274 --VEEDDN---------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD--  340 (698)
T ss_pred             --cCcccC---------CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec--
Confidence              011111         236899999999999888864 22     33333445588887777899999987765321  


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~--~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk  303 (787)
                       .-+..      .+    |..-+.++|  ..|||=...  -+.+..+.+          +   -|+...+=.    -...
T Consensus       341 -~Kslk------i~----gIr~FswsP~~~llAYwtpe~~~~parvtL~----------e---vPs~~~iRt----~nlf  392 (698)
T KOG2314|consen  341 -KKSLK------IS----GIRDFSWSPTSNLLAYWTPETNNIPARVTLM----------E---VPSKREIRT----KNLF  392 (698)
T ss_pred             -ccccC------Cc----cccCcccCCCcceEEEEcccccCCcceEEEE----------e---cCccceeee----ccce
Confidence             11111      01    234577888  788883211  000000000          0   011111000    0000


Q ss_pred             hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE
Q 003907          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL  383 (787)
Q Consensus       304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~l  383 (787)
                      +++..   +|  |++     .++-.+.+..+...-..   ..+.-..+.|+.+..+.....--.-..+|-+.+|.|.|..
T Consensus       393 nVsDc---kL--hWQ-----k~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  393 NVSDC---KL--HWQ-----KSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             eeecc---EE--Eec-----cCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence            00000   00  000     00111111111100000   0111224667776665433222233568889999999999


Q ss_pred             EEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE---eCCCeEEEE
Q 003907          384 LVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV---SSKGTCHVF  458 (787)
Q Consensus       384 LATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~---S~dgTVhIw  458 (787)
                      +|+-+..  ..++.+|-+...      .       ....++.+|..-    .-..+.|||.|+|++++   |..|++.++
T Consensus       460 F~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk~----~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  460 FAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDKK----FANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             EEEEEccccccceeEEEeecC------C-------Cchhhhhhhccc----ccceEEEcCCCcEEEEEEecccccceEEE
Confidence            9987653  235777776431      1       011334444331    24679999999999887   456889999


Q ss_pred             eCCC
Q 003907          459 VLSP  462 (787)
Q Consensus       459 dl~~  462 (787)
                      |..-
T Consensus       523 D~~~  526 (698)
T KOG2314|consen  523 DTDY  526 (698)
T ss_pred             ecch
Confidence            9873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.13  E-value=0.0028  Score=68.31  Aligned_cols=89  Identities=17%  Similarity=0.285  Sum_probs=69.3

Q ss_pred             cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      +..++.|.+|++...+--..|.....++++++|||||+.|.+-|+-+-.|.||.+.+.                  ..+-
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~  128 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYL  128 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEE
Confidence            3568899999999999889999889999999999999877777665667999998542                  2222


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCC
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKG  453 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dg  453 (787)
                      +..  -...+..++|.|||++.|..+.+.
T Consensus       129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrD  155 (447)
T KOG4497|consen  129 LPH--PKTNVKGYAFHPDGQFCAILSRRD  155 (447)
T ss_pred             ecc--cccCceeEEECCCCceeeeeeccc
Confidence            221  112368899999999999998763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.2  Score=55.04  Aligned_cols=104  Identities=20%  Similarity=0.350  Sum_probs=70.3

Q ss_pred             CCceEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          347 NAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       347 ~dG~V~IwDl~s-~~~--v~~~~aH~~p----------IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      ..|.|.++-+.. +.+  +..+..|+++          +-+..|+|+|++|++.+-.-..|.+|++..       |.   
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-------g~---  178 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-------GK---  178 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-------Cc---
Confidence            347788887754 322  2233456555          888999999999999987434599999863       21   


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCc
Q 003907          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD  466 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~  466 (787)
                       +.  ....+.+..|.   --..|+|+|++++..+... ++||-+|..++..++
T Consensus       179 -L~--~~~~~~v~~G~---GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         179 -LT--PADPAEVKPGA---GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             -cc--cccccccCCCC---CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence             00  01122333332   2467999999999877764 899999999987554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.05  E-value=0.0026  Score=78.00  Aligned_cols=96  Identities=14%  Similarity=0.314  Sum_probs=71.3

Q ss_pred             EECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          354 KDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       354 wDl~s~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                      |.. .|..++++..|...|..++.++. +.+++|||.||+ ||||++.... +.+ +.      ...+..|..    ...
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~s------~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-GS------ARSELTYSP----EGS 1099 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-ce------eeeeEEEec----cCC
Confidence            543 36789999999999999988765 599999999886 9999985421 110 10      001223332    234


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+..+.+.+.|..+|+++.||.|++++++.+
T Consensus      1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence            6889999999999999999999999999876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.02  E-value=0.17  Score=57.38  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             ccCCCc-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG-~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      -+..|| .+-|+|..+++ +..+...-+.|-+|+.+|||++++.|-.... |.+.|+.+       |.         .++
T Consensus       376 igt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn---------v~~  437 (668)
T COG4946         376 IGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN---------VRL  437 (668)
T ss_pred             EeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC---------eeE
Confidence            356677 79999998876 4556666789999999999999998876443 66777754       31         222


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----TVhIwdl~~  462 (787)
                      .+-.+   -+-|++++|+|+++|||-+--+|    .|||||+..
T Consensus       438 idkS~---~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         438 IDKSE---YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ecccc---cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            22111   24599999999999999987665    689999875

>smart00320 WD40 WD40 repeats

Probab=97.01  E-value=0.0018  Score=44.63  Aligned_cols=38  Identities=32%  Similarity=0.708  Sum_probs=33.2

Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd  398 (787)
                      +.+..+.+|...|.+++|++++.++++++.|+. +++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            456777889999999999999999999999665 89996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=96.99  E-value=0.0045  Score=66.67  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=78.8

Q ss_pred             cccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          343 ADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~---~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      +.+.+...|.||......   ..+++..|...|+.|+|+|..+.|+|++.|.+ -.||.....      |    -|.   
T Consensus        26 Av~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~------~----~Wk---   91 (361)
T KOG1523|consen   26 AVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSG------G----TWK---   91 (361)
T ss_pred             EeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCC------C----eec---
Confidence            344566789999876654   77889999999999999999999999999655 799986321      1    132   


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       +...|.|  .+...+++.|||.++.+|++|.-..|-||-++.
T Consensus        92 -ptlvLlR--iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   92 -PTLVLLR--INRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             -cceeEEE--eccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence             3333444  233479999999999999999999999987653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.96  E-value=0.002  Score=70.90  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ...+.+|....+. ...+-+|-+-+..++|+||++++.||..|++ |||=.. |.+                .-+..+.-
T Consensus       131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa~----------------f~Iesfcl  191 (390)
T KOG3914|consen  131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PAT----------------FVIESFCL  191 (390)
T ss_pred             ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Ccc----------------cchhhhcc
Confidence            3455566655433 3456699999999999999999999999776 888665 211                12233344


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      |++ .-|..|+.-++ +.|+++|.|+|+++||+...+..
T Consensus       192 GH~-eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  192 GHK-EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ccH-hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            543 34777877654 56999999999999999987655

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.95  E-value=0.0027  Score=80.31  Aligned_cols=87  Identities=22%  Similarity=0.395  Sum_probs=64.6

Q ss_pred             CCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          347 NAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       347 ~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      .++.+.+||..-.   ..+.  .+|.+.++++++-|.-.+|.||+.+|. |.|||++.                  ++  
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rq------------------rq-- 2369 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQ------------------RQ-- 2369 (2439)
T ss_pred             CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHH------------------HH--
Confidence            3567888986432   2344  799999999999999999999999887 89999953                  11  


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                       ++ .  +  ++.  +. .-.++++++.+|+++||+++.++-
T Consensus      2370 -l~-h--~--~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2370 -LR-H--T--FQA--LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             -HH-H--H--hhh--hh-hhheeeccCcccceEEEEccccch
Confidence             11 1  0  111  22 446899999999999999998743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.94  E-value=0.11  Score=59.42  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=47.4

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVW--di~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..|.++|+.+++ ...+..+........|+|||+.|+-.|..+..-.||  |+..       |.        .+++ . .
T Consensus       257 ~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-------g~--------~~rl-t-~  318 (419)
T PRK04043        257 PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-------GS--------VEQV-V-F  318 (419)
T ss_pred             cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEeC-c-c
Confidence            467777877765 334444433233458999999888777644434455  4421       21        1121 1 1


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      .|.     ...+|||||++|+..+..
T Consensus       319 ~g~-----~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        319 HGK-----NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCC-----cCceECCCCCEEEEEEcC
Confidence            122     124899999999888765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0055  Score=65.38  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             cccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          343 ADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      .....+|.+.+-+.....+  ++..++|+-++...+|+. +-+++.||++||. +.-||++-.      +          
T Consensus       137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------  199 (339)
T KOG0280|consen  137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------  199 (339)
T ss_pred             EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------
Confidence            3445567666555554443  447899999999999986 3468889998775 999999621      1          


Q ss_pred             eEEEEEecccccccEEEEEEc-cCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          420 VHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFS-pDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      ..++.-.+ .+..-|.+|.=| |+..+|++|+.|.+|++||....+.+
T Consensus       200 ~~i~~n~k-vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  200 TFIWHNSK-VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             ceeeecce-eeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            12222111 123447888777 47899999999999999999876554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.90  E-value=0.056  Score=58.23  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----c-----ccccccE-
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI-  434 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-----r-----G~~~a~I-  434 (787)
                      ..-.+.|+.+.|+++|+++++-+- - +++|||+...      .          .++.+..     +     -..+..| 
T Consensus       277 ~eivsSISD~kFs~ngryIlsRdy-l-tvkiwDvnm~------k----------~pikTi~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         277 EEIVSSISDFKFSDNGRYILSRDY-L-TVKIWDVNMA------K----------NPIKTIPMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             HHHhhhhcceEEcCCCcEEEEecc-c-eEEEEecccc------c----------CCceeechHHHHHHHHHhhhhcccee
Confidence            344578999999999999987765 3 5999998532      1          1222210     0     0001112 


Q ss_pred             --EEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          435 --QDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       435 --~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                        ..+.||-|.+.+.+||.....-||.....
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             eeEEEEecCCcccccccccccceeeeccccC
Confidence              45899999999999999998888885543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.87  E-value=0.015  Score=64.95  Aligned_cols=96  Identities=9%  Similarity=0.024  Sum_probs=73.7

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      +.|.|.|..+++.+.++..-..|-- + +||||+.|..|..         +...|.|||+.+.                 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-----------------   87 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-----------------   87 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----------------
Confidence            8999999999999999986555543 4 9999999999888         6778999999652                 


Q ss_pred             eEEEEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCeEEEEeCCCC
Q 003907          420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPF  463 (787)
Q Consensus       420 ~~l~~l~rG~~-----~a~I~slaFSpDg~~LAs~S-~-dgTVhIwdl~~~  463 (787)
                      ..+.++.-|..     ...-..+++||||++|.+.. + +..|-|.|+...
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence            34445442221     11235799999999999887 4 689999999864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.85  E-value=0.021  Score=67.56  Aligned_cols=102  Identities=24%  Similarity=0.308  Sum_probs=75.8

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CC---EEEEEeCCCCcccCCCCCCcc
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GN---NINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d------G~---~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      +-|.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--.- .|+|.+..      |.   .+.|=|+.+       |    
T Consensus       441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrt-------G----  508 (1062)
T KOG1912|consen  441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRT-------G----  508 (1062)
T ss_pred             EeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccc-------c----
Confidence            457789999999999999999999999999999997554 45555431      11   133445533       2    


Q ss_pred             ccCCcceEEEEEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          414 DWNSSHVHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       414 ~~~~s~~~l~~l~--rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                             .-..+|  ++.....|..|.-|.-|+||+..-.|.-+.|||+...
T Consensus       509 -------lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  509 -------LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             -------cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence                   111222  4555567999999999999999999999999999653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.85  E-value=0.81  Score=51.07  Aligned_cols=57  Identities=16%  Similarity=0.023  Sum_probs=41.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEE-EecCCeEEE-EeCCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV-~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|.-+|.++|+.+....+...+.+. ....+.+.+ ..++.|++||+.+++.+++...
T Consensus       115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            58999999999999888877655321 122344444 4567899999999998888764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.83  E-value=1.2  Score=49.75  Aligned_cols=91  Identities=15%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             cCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          345 MDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +..+|.+..+|..+++.+.....- .....+...  .|.+|.+++.+|. +.+||..+       |          +.++
T Consensus       285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~  344 (377)
T TIGR03300       285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVA  344 (377)
T ss_pred             ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEE
Confidence            456899999999999877655321 111222222  3568888888775 88999754       3          4555


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIw  458 (787)
                      ++.-+.. ....+.++. |+ .|..++.||++..|
T Consensus       345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            5543211 111222233 33 58899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.83  E-value=0.0081  Score=69.38  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=66.4

Q ss_pred             EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          352 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       352 ~IwDl~s~~~--v~~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      .+|++..++.  +... -.+.+.|.+.+++|+.+.|+.|..||. |.+||...       +            +..+.+.
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka  298 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA  298 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence            3666655432  2221 257789999999999999999999886 89999853       1            1111111


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                        .-....++|+|||..+++++..|.+.+||+.-.
T Consensus       299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence              124688999999999999999999999999754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.0086  Score=65.74  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=82.1

Q ss_pred             ccccCCCceEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907          342 GADMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s------~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      ++++..|-.++||.+..      .+++.... .|.+.|.||+|+-..++|.++..+|+ |.+.|+.+.            
T Consensus        71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------  137 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------  137 (609)
T ss_pred             EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence            45677888999999853      34555443 46689999999999999999999887 667888642            


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                           +.++.+......+.|+.+.-+|-.+.|++.+.++-|-+||+....
T Consensus       138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence                 456666433334479999999999999999999999999997643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.51  E-value=0.31  Score=55.72  Aligned_cols=90  Identities=14%  Similarity=0.255  Sum_probs=62.1

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ..+.|+++....+... ..-.+||...+|+|.++.+++.+ .....+.+||+..                  ...+.+-.
T Consensus       255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------------Nl~~~~Pe  315 (561)
T COG5354         255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------------NLRFYFPE  315 (561)
T ss_pred             ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeeccccc------------------ceEEecCC
Confidence            4688888874433222 25578999999999999999988 4455688999842                  12222222


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLS  461 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~  461 (787)
                      +.    =..+.|||.++|+..++.|   |.+-|||..
T Consensus       316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             cc----cccccccCcccEEEEecCCccccceEEeccC
Confidence            21    1347799999999998876   458888764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.40  E-value=0.83  Score=49.07  Aligned_cols=31  Identities=23%  Similarity=0.522  Sum_probs=28.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      -...|..|+.||||++||+....|. |-||++
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i  258 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI  258 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence            4678999999999999999999886 999998

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.38  E-value=0.3  Score=52.41  Aligned_cols=96  Identities=15%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCC----------EEEEEeCCCC---cc-cCCCCCCccccCC---cceEEEE----Ee
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGN----------NINIFRIMPS---CM-RSGSGNHKYDWNS---SHVHLYK----LH  426 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~----------~IrVWdi~~~---~~-~~~~g~~~~~~~~---s~~~l~~----l~  426 (787)
                      +...|+++.++|.-++|..|+....          -+--|.+...   +. ...... ......   ...++..    .+
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~-~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED-DITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc-cccccccccceeeccceeeeec
Confidence            4779999999999888877654211          2556766431   10 000000 000000   0011111    12


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      .+.....|..|+.||||+.||+...+|.+-||++..-.
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            23334569999999999999999999999999997643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.01  Score=65.66  Aligned_cols=96  Identities=25%  Similarity=0.266  Sum_probs=75.3

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      |++.+-.+.+...-+..|..-|..|+|||... +|..+|. |..|+|+|+.+.+.               ...|...   
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~~---------------vssy~a~---  235 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSCV---------------VSSYIAY---  235 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEeccccee---------------eeheecc---
Confidence            77777777776777788999999999999877 7888888 78899999975321               2223332   


Q ss_pred             ccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       430 ~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                        ..|++++|.-|. .+|.+|-.+|.|.|||+....++.
T Consensus       236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence              359999999776 678888899999999998776654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.28  E-value=0.28  Score=58.48  Aligned_cols=124  Identities=12%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             eeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcc--ccCcEEEEEEcCCCC
Q 003907           65 DRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR--KLHPFLLVVAGEDTN  142 (787)
Q Consensus        65 d~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~--~srpLLavV~~d~~~  142 (787)
                      +..++++   +-+++-|..+-+-|-|.-. -+....++.|...|..|++.|.|.-.+   .++  ...++||+  +|-  
T Consensus        19 ~A~Dw~~---~GLiAygshslV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~---llS~~~~~lliAs--aD~--   87 (1062)
T KOG1912|consen   19 NAADWSP---SGLIAYGSHSLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRD---LLSPSSSQLLIAS--ADI--   87 (1062)
T ss_pred             cccccCc---cceEEEecCceEEEEehhh-hhhhhccccCccceeEEEeccCCCchh---ccCccccceeEEe--ccc--
Confidence            3344454   4478888777788888743 446677889999999999999886433   344  24455554  331  


Q ss_pred             CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEe------cCCeEEE-EeCCeEE
Q 003907          143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRC------SPRIVAV-GLATQIY  214 (787)
Q Consensus       143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~------s~~~LaV-~~~~~I~  214 (787)
                                                   .++|.+||+..+..+..++.+. +|.++.+      ++++|++ -....|.
T Consensus        88 -----------------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv  138 (1062)
T KOG1912|consen   88 -----------------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV  138 (1062)
T ss_pred             -----------------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEE
Confidence                                         2589999999999999998764 7777766      3345544 4557899


Q ss_pred             EEECCCCceeEEEE
Q 003907          215 CFDALTLENKFSVL  228 (787)
Q Consensus       215 iwD~~T~e~l~tl~  228 (787)
                      +|+..||++.+...
T Consensus       139 LwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen  139 LWNTDTGEKFWKYD  152 (1062)
T ss_pred             EEEccCCceeeccc
Confidence            99999999877654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.24  E-value=0.28  Score=53.78  Aligned_cols=97  Identities=12%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             ceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|.+|++...+ .+.. .-+..++..++....+.+++.++.... +.++.....      +          ..+..+.+
T Consensus       107 ~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~va~  168 (321)
T PF03178_consen  107 NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRYDEE------N----------NKLILVAR  168 (321)
T ss_dssp             TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEEETT------T----------E-EEEEEE
T ss_pred             CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEEcccC-EEEEEEEcc------C----------CEEEEEEe
Confidence            467777776665 3222 112222233333334668888887554 666644221      1          34555555


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      -.....+.++.|-.|++.++++..+|.++++..++.
T Consensus       169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            444456899999877789999999999999998753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.032  Score=63.08  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      +.+++..|.|-|||-.+++.+.-+.+-..-|+||.=+|---+|||++. ++.|+||.-
T Consensus       409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP  465 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP  465 (559)
T ss_pred             EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence            346778899999999999999999987779999999999999999999 667999974

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.14  E-value=0.63  Score=50.96  Aligned_cols=97  Identities=23%  Similarity=0.305  Sum_probs=61.8

Q ss_pred             ceEEEEECCCCcEEEE--e--ccCCCCeEEEEECCCCCEEEEEEcCCC------EEEEEeCCCCcccCCCCCCccccCCc
Q 003907          349 GIVVVKDFVTRAIISQ--F--KAHTSPISALCFDPSGTLLVTASVYGN------NINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~--~--~aH~~pIsaLaFSpdG~lLATaS~dG~------~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      -.+...|..+++++.+  +  .-|.-.|..|+++++|+.+.-.-.+|-      .+-+++-         |.        
T Consensus       138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~--------  200 (305)
T PF07433_consen  138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GG--------  200 (305)
T ss_pred             CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CC--------
Confidence            4566778899998887  5  238889999999999987765544332      1112211         10        


Q ss_pred             ceEEEEE----ecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCC
Q 003907          419 HVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF  463 (787)
Q Consensus       419 ~~~l~~l----~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~  463 (787)
                      ...+...    .+.. ..-|-+|+|++||.++|++|-+ +.+.+||..+.
T Consensus       201 ~~~~~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  201 ALRLLPAPEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             cceeccCChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            0001110    0111 1248899999999999888765 57999988763

>KOG4415 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.0043  Score=61.93  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=43.1

Q ss_pred             cccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCC
Q 003907          666 LDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDS  720 (787)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~p~w~~~~~~f~~~~~  720 (787)
                      .|+..+++++...  .+...+|+..| ++.+|+.||.++ ..|||.|||.|+.+..
T Consensus         6 gPi~~~~s~dsla--adh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~   58 (247)
T KOG4415|consen    6 GPIMAFASVDSLA--ADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE   58 (247)
T ss_pred             Cceeeeeeccccc--ccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence            5676667766533  26678999999 999999999998 5999999999998876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.0048  Score=73.41  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      +.++.+..+.+.|--       .-+-|++|.-.| +++|++. +|...+-++.|+.+|..++=.-+           ++ 
T Consensus      1097 frd~~~~fTc~afs~-------~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~d-----------gs- 1156 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-------GTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVD-----------GS- 1156 (1516)
T ss_pred             hhccccceeeEEeec-------CCceEEeeeccceEEEEEcc-CccccccccccccccccccccCC-----------cc-
Confidence            445555556666632       346799999887 9999995 57777889999999998873311           22 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCcEEEEEecC---CeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP---RIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-tg~~v~tL~f~s~V~sV~~s~---~~La  206 (787)
                       +++..+. .   +                           .--..+|+++ ++...|++.-..   +|.|+.   .+++
T Consensus      1157 -~~Ltsss-~---S---------------------------~PlsaLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1157 -TQLTSSS-S---S---------------------------SPLSALWDASSTGGPRHSFDEDK---AVKFSNSLQFRAL 1201 (1516)
T ss_pred             -eeeeecc-c---c---------------------------CchHHHhccccccCccccccccc---eeehhhhHHHHHh
Confidence             4443221 0   0                           1135689987 466777665433   456655   2333


Q ss_pred             EEeCCeEEEEECCCCceeEEEE
Q 003907          207 VGLATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       207 V~~~~~I~iwD~~T~e~l~tl~  228 (787)
                      ....+...+||++|...+.++.
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             cccccceEEEecccCcHHHHhc
Confidence            3334679999999987766654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.02  E-value=0.18  Score=61.06  Aligned_cols=51  Identities=10%  Similarity=0.009  Sum_probs=42.0

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-C---------eEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-T---------QIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~~-~---------~I~iwD~~T~e~  223 (787)
                      ++|.+-|.++.+.+|++..+ +.|.+++...+.|+++.. .         -|++||++.++.
T Consensus       197 G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  197 GTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             ceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            68999999999999999865 589999999988886542 1         178999888864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.85  E-value=4.8  Score=50.89  Aligned_cols=49  Identities=16%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             CEEEEEECCCCeEEEEEeCC-----CcEEEEEecC--CeEEEEeCCeEEEEECCCCc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-----SSVCMVRCSP--RIVAVGLATQIYCFDALTLE  222 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-----s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e  222 (787)
                      ..|.||. |+|.....+..+     ..|..+.||.  .+||+...+.|++|-..+..
T Consensus       281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH  336 (928)
T PF04762_consen  281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH  336 (928)
T ss_pred             cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence            4677777 667766666543     4789999988  79999998899999887765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.71  E-value=0.061  Score=63.44  Aligned_cols=53  Identities=15%  Similarity=0.260  Sum_probs=42.0

Q ss_pred             CceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCC
Q 003907          348 AGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       348 dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~  401 (787)
                      ...|.|||++.+ .++..+++|...|+.++|+.- -..+.+++.||+ ++.||-..
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~k  233 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSK  233 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccc
Confidence            456899999875 578899999999999999863 345667777665 99999743

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.62  E-value=4.4  Score=44.32  Aligned_cols=50  Identities=10%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CEEEEEECCCC-------eEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCc
Q 003907          173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE  222 (787)
Q Consensus       173 ~tVrlWdlktg-------~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e  222 (787)
                      +.|.++++...       +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence            68999999885       456667788999999887777999999999999988776

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.49  E-value=2  Score=55.12  Aligned_cols=86  Identities=14%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCCCccccCCcceEEEEEec--cc----ccccEEEEEEccCCC
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQ  444 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~~g~~~~~~~~s~~~l~~l~r--G~----~~a~I~slaFSpDg~  444 (787)
                      ...|+|+|+|+.|..+..+.+.|++||+......- ..|....     ...++.+-.  |.    .-..-..|+|++||+
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-----~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~  816 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-----SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ  816 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc-----CcccccccCCCCchhhhhccCCceeeEeCCCc
Confidence            45699999999777777767789999985310000 0000000     000111100  00    001246899999999


Q ss_pred             EEEEEeCCCeEEEEeCCC
Q 003907          445 WIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       445 ~LAs~S~dgTVhIwdl~~  462 (787)
                      .+++-+.+++|++||...
T Consensus       817 LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        817 IYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             EEEEECCCCEEEEEECCC
Confidence            999999999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.47  E-value=0.14  Score=54.32  Aligned_cols=104  Identities=12%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             cCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          345 MDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +..|.++++.++..+  +....+..  -.++++++|+|++++++.++ -..|-.|.+...      +          ..+
T Consensus       134 ~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s----------ey~  194 (344)
T KOG4532|consen  134 ASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S----------EYI  194 (344)
T ss_pred             ccCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c----------cee
Confidence            345666666665433  32222221  23789999999999999877 444667777331      1          111


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      -+.+...+...=.+.+||.....+|+++.||++-|||+...+.+.
T Consensus       195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            112212222334678999999999999999999999998765543

>smart00320 WD40 WD40 repeats

Probab=95.41  E-value=0.056  Score=36.81  Aligned_cols=29  Identities=21%  Similarity=0.442  Sum_probs=26.5

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          431 SATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      ...|.+++|+++++++++++.|+++.+|+
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34699999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.29  E-value=0.31  Score=55.78  Aligned_cols=77  Identities=19%  Similarity=0.352  Sum_probs=51.5

Q ss_pred             CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEc-----CCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASV-----YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~-----dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      .|.+.|||....-.+. .+.+-  .-+.+.|+|||.++-++-.     .|..|+|||+.        |          ..
T Consensus       339 ~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--------g----------~~  398 (561)
T COG5354         339 QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--------G----------AK  398 (561)
T ss_pred             ccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec--------C----------ch
Confidence            4667788877655444 56553  2345689999999877633     25569999983        2          12


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg  453 (787)
                      ..         ..+.+.|.|-|++..+.|.+.
T Consensus       399 ~f---------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         399 VF---------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             hh---------hhhhccccCCcccceeeccCC
Confidence            22         235588999999888877665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.061  Score=61.41  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=77.1

Q ss_pred             ccccCCCceEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccC
Q 003907          342 GADMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRS  406 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s-------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~--------~~~  406 (787)
                      ..+++.|.+|++|.++.       ..+..+..+|+.+|..+.|=.+-+++|++.  |. |++||---..        ...
T Consensus       750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~  826 (1034)
T KOG4190|consen  750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKE  826 (1034)
T ss_pred             eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCccc
Confidence            34678999999999864       236667789999999999999999998764  43 9999931100        000


Q ss_pred             CCCCC-----ccc--------cCCcceEEE---------EEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          407 GSGNH-----KYD--------WNSSHVHLY---------KLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       407 ~~g~~-----~~~--------~~~s~~~l~---------~l~r---G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      +.|..     ..+        ...+..+++         +++-   -.-++.+.+++..+.|+|+|++-+.|++-+.|..
T Consensus       827 ~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  827 GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR  906 (1034)
T ss_pred             CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence            00100     000        000011111         1211   0113458899999999999999999999999876


Q ss_pred             CC
Q 003907          462 PF  463 (787)
Q Consensus       462 ~~  463 (787)
                      ..
T Consensus       907 ~G  908 (1034)
T KOG4190|consen  907 NG  908 (1034)
T ss_pred             CC
Confidence            54

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.85  Score=51.01  Aligned_cols=51  Identities=10%  Similarity=0.224  Sum_probs=43.3

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCC-eEEEEECCCCc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE  222 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~-~I~iwD~~T~e  222 (787)
                      .++|+|.|+.+...+.++..+..++++.|+.   +.|-.|+.+ .|++||++..+
T Consensus       215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3799999999999999999899999999976   567777754 59999998655

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.21  E-value=0.059  Score=56.93  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             ccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCC-cc
Q 003907          344 DMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNS-SH  419 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~-s~  419 (787)
                      -+..+|.+.|||.++.. ++..+++|+.+|+-+-|+| ++..|.|+|+||. +.-||....+. .+.....-..|-. ..
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD~  275 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGDP  275 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCCc
Confidence            56789999999999875 3456789999999999999 6889999999886 66788652211 0000000011110 00


Q ss_pred             -eEEEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEe
Q 003907          420 -VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       420 -~~l~~l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwd  459 (787)
                       .-+.++. +.-+....+| +|.--|..|++|++-+-|.+++
T Consensus       276 v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  276 VKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence             1111111 1111112222 2455577899999998888764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.03  E-value=0.76  Score=49.06  Aligned_cols=99  Identities=14%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             ccccccCCCceEEEEECCCCcEEEEe-----ccCCCCeEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          340 HAGADMDNAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       340 ~~~~s~~~dG~V~IwDl~s~~~v~~~-----~aH~~pIsaLaFSpdG~l-LATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      ...+.+.+||++-|||++.......+     ..|.+.|..+.|++-|.+ |+--|+.=.-+.|-|++...     .    
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-----~----  286 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-----N----  286 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-----e----
Confidence            34567889999999999886533322     358999999999986653 33344544457888886521     0    


Q ss_pred             ccCCcceEEE---EEecccccccEEEEEEccCCCEEEEEeCC
Q 003907          414 DWNSSHVHLY---KLHRGITSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       414 ~~~~s~~~l~---~l~rG~~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                           .+.+.   +..|.+....|..-.|+.++.-+-+.+.+
T Consensus       287 -----~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  287 -----HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             -----eeEEecCccccccccccccccccccCCCcccccccch
Confidence                 01111   00122222347777788777666665544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=0.021  Score=65.02  Aligned_cols=85  Identities=20%  Similarity=0.312  Sum_probs=62.0

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      .+..|.+|+..|.+++-=.+.+-+++||. ++++++|.+++.  +++-|        ...+.++...  +...|.++.|=
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASk-DKTVKLWSik~E--gD~~~--------tsaCQfTY~a--Hkk~i~~igfL  793 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASK-DKTVKLWSIKPE--GDEIG--------TSACQFTYQA--HKKPIHDIGFL  793 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccC-CceEEEEEeccc--cCccc--------cceeeeEhhh--ccCcccceeee
Confidence            45678899999998876667778889999 556999999874  22212        1134455432  34579999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeC
Q 003907          441 HYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl  460 (787)
                      .|-++++++  ||-+|+||-
T Consensus       794 ~~lr~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  794 ADLRSIASC--DGGIHLWDP  811 (1034)
T ss_pred             eccceeeec--cCcceeecc
Confidence            999988765  788999984

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=94.86  E-value=0.095  Score=67.20  Aligned_cols=116  Identities=13%  Similarity=0.211  Sum_probs=84.1

Q ss_pred             ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-----------
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS-----------  406 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-----~~-----------  406 (787)
                      ++++||.|++|....++.+..++ +-...|+.+.|+.+|..+..+..||. +-+|.+.+-+-     ++           
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence            67899999999999998888876 34488999999999999998888775 89999875321     00           


Q ss_pred             --------CCCCCccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          407 --------GSGNHKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       407 --------~~g~~~~~~~~----s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                              ..+....+|+.    ....+.+.+    ...++++++-|.-+.|.+|+.+|.|.|||+....
T Consensus      2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H----~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH----DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             hhhccccCCCCCcccchhcccCcccceeeeec----CCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence                    01111122322    112222222    2347899999999999999999999999998643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.69  E-value=0.23  Score=58.84  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=73.5

Q ss_pred             ccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      ++....|-.|..||+++.. .+..+..-...-+.++|+- ++..||  |..|+.|+|||++.       |.         
T Consensus       130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~-------gs---------  191 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK-------GS---------  191 (1081)
T ss_pred             eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC-------CC---------
Confidence            3456678899999998854 4444444344556788886 566665  34588999999864       21         


Q ss_pred             eEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          420 VHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      ..+..+++  +.+.|..+.|..- -..+.+++.|+||+.|+.+....+
T Consensus       192 ~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  192 TPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             cceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            36667765  4467899988743 246889999999999998765443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.17  Score=59.22  Aligned_cols=77  Identities=18%  Similarity=0.290  Sum_probs=60.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIA  447 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I-~slaFSpDg~~LA  447 (787)
                      ..|-.+.|+|.=.++|++-.+|. +-+..+..                  ++++++. +|.   .+ .+++|.|||+.||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLA   78 (665)
T ss_pred             cceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEE
Confidence            35667899999999999999887 66776632                  4677765 442   23 4999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCccc
Q 003907          448 IVSSKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~  468 (787)
                      +|-.||||+|-|+...+....
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEecCCeEEEEEccCCCceec
Confidence            999999999999998765543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.18  E-value=0.38  Score=55.55  Aligned_cols=82  Identities=16%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             ceEEEEECCCCcEEEEeccCCC--Ce-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          349 GIVVVKDFVTRAIISQFKAHTS--PI-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~--pI-saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..+.|||+.+|...+.|..-.+  ++ .-..||.|++++|--..  ..|.||+...                  -.+++.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~  341 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK  341 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence            4689999999999888876322  22 24689999999987654  4599999721                  123332


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      + ......|.+..|||.++.||--+-
T Consensus       342 K-slki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  342 K-SLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             c-ccCCccccCcccCCCcceEEEEcc
Confidence            2 122335899999999998886543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=93.60  E-value=0.19  Score=55.07  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             ccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      .+...|.|.++|++.+    ...++---|.+.|++|..=. ++.+|...+.+|+ |++||++-....  -+         
T Consensus       269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~--~~---------  336 (425)
T KOG2695|consen  269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCK--KS---------  336 (425)
T ss_pred             ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcc--cc---------
Confidence            4677899999999875    23333345889999887644 7788888888786 999998542110  00         


Q ss_pred             ceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          419 HVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       419 ~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       ...|+   |+-+. .-.-+-..+....++++++|--.+||.++.
T Consensus       337 -V~qYe---GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  337 -VMQYE---GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             -eeeee---cccccccccccccccccceEEEccCeeEEEEEeccc
Confidence             12222   32221 111123346667889999999999999985

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=93.45  E-value=0.24  Score=53.23  Aligned_cols=103  Identities=18%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             cccCCCceEEEEECC-CCcEEEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          343 ADMDNAGIVVVKDFV-TRAIISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~-s~~~v~~-~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      .+++.||.+.-||++ .++.+-+ .+-|+..|.+|.=+| .+.+++|||-|++ |++||++.-      |          
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~----------  244 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G----------  244 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------
Confidence            367889999999998 3444444 678999999998876 6999999999665 999998632      2          


Q ss_pred             eEEEEEecccccccEEEEEEccCC--CEEEEEeCCCeEEEEeCCCCCCc
Q 003907          420 VHLYKLHRGITSATIQDICFSHYS--QWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg--~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +++++-.-   .+-|+.|.++|--  +.|+++=.+| .+|-+++....+
T Consensus       245 kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  245 KPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE  289 (339)
T ss_pred             CccccCcc---ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence            34433221   1348888888743  3444444444 677777665444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.33  E-value=12  Score=39.12  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      |.|..++.. ++....+ ..-.--+.|+|+|+|+.|..+......|..|++...      +..   + ...+.+..+..+
T Consensus       115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~~---~-~~~~~~~~~~~~  182 (246)
T PF08450_consen  115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GGE---L-SNRRVFIDFPGG  182 (246)
T ss_dssp             EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TCC---E-EEEEEEEE-SSS
T ss_pred             cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------ccc---e-eeeeeEEEcCCC
Confidence            566666666 4432222 223456899999999988766665666777877421      100   0 001122333322


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .  ...-.+++..+|+..++.-..+.|.+|+-+
T Consensus       183 ~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  183 P--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             S--CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             C--cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            1  236789999999988888888889988754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.18  E-value=13  Score=39.29  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=29.9

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF  116 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~  116 (787)
                      ++.|++|+++|+-++++.......+++....  |.-++++|.
T Consensus         7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~   46 (275)
T PF00780_consen    7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE   46 (275)
T ss_pred             CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence            5789999999999999944455556655533  888888863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.00  E-value=17  Score=40.05  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs  448 (787)
                      ..-|-+|+|+++|.++|..|-.|+.+.+||..+       |          ..+...    .-..++.++-.+++ ++++
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLVS  273 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEEe
Confidence            467889999999999998888899999999864       3          222211    11246778777777 5555


Q ss_pred             EeCCCeEEEEeCCCC
Q 003907          449 VSSKGTCHVFVLSPF  463 (787)
Q Consensus       449 ~S~dgTVhIwdl~~~  463 (787)
                      ++ .|.  ++.+...
T Consensus       274 sG-~G~--~~~~~~~  285 (305)
T PF07433_consen  274 SG-QGQ--LIRLSPD  285 (305)
T ss_pred             CC-Ccc--EEEccCc
Confidence            44 443  5555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.92  E-value=0.29  Score=57.90  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=74.4

Q ss_pred             cccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          343 ADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      +.+...|.+.+|+-..+.... ...+-++.+..++.|++..++|.|+..| .|-||.+...      +-         ..
T Consensus        49 ~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g-~V~v~ql~~~------~p---------~~  112 (726)
T KOG3621|consen   49 AMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG-RVSVFQLNKE------LP---------RD  112 (726)
T ss_pred             EEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc-eEEeehhhcc------CC---------Cc
Confidence            345678999999977665322 2233556778889999998888888745 5899988531      10         12


Q ss_pred             EEEEecccc--cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          422 LYKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       422 l~~l~rG~~--~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +..+.++..  ...|++++||+|++.|.+|.+.|+|+.-.++.
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            222333333  45799999999999999999999999988876

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.67  E-value=0.28  Score=38.81  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      +.|..++|||....||.++.||.|.||.++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            469999999999999999999999999984

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.39  E-value=6.7  Score=45.24  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      .|.+.|+.++.... +..-.+.-..=.|+|||+.++-+|+.+..-+||-....      |.        .....++..+.
T Consensus       263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~------g~--------~~~riT~~~~~  327 (425)
T COG0823         263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE------GS--------QVTRLTFSGGG  327 (425)
T ss_pred             cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC------CC--------ceeEeeccCCC
Confidence            35555665554222 22211111234799999999998887766677766432      21        12233333222


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC
Q 003907          430 TSATIQDICFSHYSQWIAIVSSK  452 (787)
Q Consensus       430 ~~a~I~slaFSpDg~~LAs~S~d  452 (787)
                      .    ..-.|||||++|+..+..
T Consensus       328 ~----~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         328 N----SNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             C----cCccCCCCCCEEEEEecc
Confidence            1    157799999999998854

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.00  E-value=16  Score=37.33  Aligned_cols=57  Identities=11%  Similarity=-0.030  Sum_probs=42.4

Q ss_pred             CEEEEEECCCCeEEEEE-eCCC------cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL-~f~s------~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|..+|.++|+.+.+. ....      ......+..+.++++. .+.|+++|+.|++.++....
T Consensus        86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            47999999999999984 4321      1234445567777776 67899999999999888875

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.92  E-value=2.7  Score=48.48  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCC----eEEEEECCCCc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLE  222 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~T~e  222 (787)
                      ..+.++|+.+++.-..+.|.+.-..-+|++  +.|+.+...    .||++|+.+.+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            368899999998888888887777778888  777776542    49999988776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.88  E-value=26  Score=39.53  Aligned_cols=56  Identities=5%  Similarity=-0.082  Sum_probs=37.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEE--ec----CCeEEE-EeCCeEEEEECCCCceeEEEE
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVR--CS----PRIVAV-GLATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~--~s----~~~LaV-~~~~~I~iwD~~T~e~l~tl~  228 (787)
                      +.|.-+|.++|+.+..++...+...++  .+    ...+.+ ..++.++.+|+.+++.+++..
T Consensus       170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~  232 (394)
T PRK11138        170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR  232 (394)
T ss_pred             CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence            478899999999998887543221111  11    233444 446689999999999887764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=91.43  E-value=0.23  Score=52.58  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             ceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v-~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +..++|++.-.+.. ...++ ...|.+++-+|.-+.++.++.++..+-|||.+..       .         ...-.|. 
T Consensus       159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~---------~p~S~l~-  220 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------A---------MPVSLLK-  220 (319)
T ss_pred             cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccc-------c---------chHHHHH-
Confidence            34566776543321 11122 2349999999976655555555667999998531       0         0111111 


Q ss_pred             ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 003907          428 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       428 G~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~  462 (787)
                       .+.+.|+.+-|.| ++..|.+++.||.+.-||-+.
T Consensus       221 -ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  221 -AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             1346799999998 568999999999999998764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=90.97  E-value=0.41  Score=52.47  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             ccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      +.++..|-.|.+||+.-++ ....+.+|.+.|.+++.-+--+.|.+++.||. |-+||..
T Consensus       212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn  270 (404)
T KOG1409|consen  212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN  270 (404)
T ss_pred             EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence            4467889999999998655 45567899999999999888899999999776 8999975

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.93  E-value=0.83  Score=54.93  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=63.5

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +.+...|.|.+++.... . .+...|...      +-+|.++||||.||+ |.|..+-+.               ...+.
T Consensus        53 ~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~  108 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQ  108 (846)
T ss_pred             eeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------cccee
Confidence            45677899999987643 2 444455443      778999999999887 677766321               11345


Q ss_pred             EEEecccccccEEEEEEccC-----CCEEEEEeCCCeEEEEeCC
Q 003907          423 YKLHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpD-----g~~LAs~S~dgTVhIwdl~  461 (787)
                      +.+.|     .|.+|+++||     ++.+++|+..| +-++.-+
T Consensus       109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~  146 (846)
T KOG2066|consen  109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN  146 (846)
T ss_pred             EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence            66654     5889999999     67899999998 7776543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.87  E-value=39  Score=43.15  Aligned_cols=51  Identities=20%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecC
Q 003907           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPF  116 (787)
Q Consensus        57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~  116 (787)
                      +.|+-+.|=.    +   ..-+.++...| +-+=|.+  ....+++..-+++|.++++.|+
T Consensus        69 ~~i~s~~fl~----d---~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS~D  120 (1265)
T KOG1920|consen   69 DEIVSVQFLA----D---TNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWSPD  120 (1265)
T ss_pred             cceEEEEEec----c---cceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeecCC
Confidence            7888777754    1   33455555555 4444654  3467888888999999999986

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.86  E-value=0.42  Score=56.50  Aligned_cols=102  Identities=17%  Similarity=0.276  Sum_probs=70.9

Q ss_pred             cccccCCCceEEEEECCCC---------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907          341 AGADMDNAGIVVVKDFVTR---------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR  405 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~---------------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~  405 (787)
                      .++-++.||.++|..+.+.               ..-.++.+|...|.-+.|+.+.+.|-|...+| .|.||=+-.    
T Consensus        28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk----  102 (1189)
T KOG2041|consen   28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK----  102 (1189)
T ss_pred             eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec----
Confidence            3456778888888876542               12346789999999999999999997777755 799997632    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                         |.    |-   +.+.. .|  ....|.+|+|..||+.|+..-.||.|.|=.+
T Consensus       103 ---gs----W~---EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen  103 ---GS----WC---EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             ---cc----HH---HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence               20    00   00000 11  2246899999999999999999988765443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.77  E-value=0.68  Score=50.84  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=54.7

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc---CCcceEEEEEecccc-cccEEEEEEccCCC
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW---NSSHVHLYKLHRGIT-SATIQDICFSHYSQ  444 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~---~~s~~~l~~l~rG~~-~a~I~slaFSpDg~  444 (787)
                      ..-|+++.|+.+|.+||||..+|+ +-+|.-....  +  |  .+..   -+++..-+....-.. .-.|..|.|-++++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~--~--~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGR-VVLFEREKLY--K--G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCe-EEEeeccccc--c--c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            356899999999999999999666 7788642210  0  0  0000   000000000000000 12488899998874


Q ss_pred             --EEEEEeCCCeEEEEeCCCCCCc
Q 003907          445 --WIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       445 --~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                        .+..++.|.||++|.+...+..
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k  121 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSK  121 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccc
Confidence              5677889999999999765443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.52  E-value=35  Score=42.06  Aligned_cols=49  Identities=8%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             CceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeC
Q 003907          348 AGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRI  399 (787)
Q Consensus       348 dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi  399 (787)
                      ...|.+|.+.... ....+..|..+++|-+|++.-. ++++++.   .+-+||.
T Consensus       192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~s  242 (933)
T KOG2114|consen  192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDS  242 (933)
T ss_pred             cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcC
Confidence            4467777777544 2445778888999999987544 5554444   4889986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=90.43  E-value=0.52  Score=54.91  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                      .-+..||.|++||...+.  .++.-+.-..+.++|+|+|.+++.|+..|. +.+||+.-.
T Consensus       275 vlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  275 VLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence            357899999999987663  333344556788999999999999999886 999998643

>PRK02888 nitrous-oxide reductase; Validated

Probab=90.32  E-value=17  Score=43.64  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             cCCCceEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~------------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      +..+.+|.|.|+.+.+            ++++..--.+|+ ..+|+++|+...|--.|. .|-.|++..
T Consensus       339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~ds-qv~kwn~~~  405 (635)
T PRK02888        339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDS-QIVKWNIEA  405 (635)
T ss_pred             CCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecc-eeEEEehHH
Confidence            3456788888887744            456665555665 458999999888888744 588899854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.24  E-value=0.66  Score=55.92  Aligned_cols=98  Identities=17%  Similarity=0.275  Sum_probs=70.5

Q ss_pred             ccCCCceEEEEECCCCcEEEEe--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQF--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~--~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      +....|.|.||- .+|++....  +-|   +++|||+|.--.||.+=..| .+.||....                  ..
T Consensus        36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e   92 (1416)
T KOG3617|consen   36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TE   92 (1416)
T ss_pred             cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccc-eeEEEecCC------------------ce
Confidence            456678898874 445433322  223   35699999988899887766 489998632                  12


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      .+..- -.+.+.|+-+.|||||..|+++..=|.||+|.....|.
T Consensus        93 ~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~  135 (1416)
T KOG3617|consen   93 THTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE  135 (1416)
T ss_pred             eeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence            23332 23567899999999999999999999999999986543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=89.61  E-value=35  Score=42.39  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      +.++.+|.||+||-...+....|++-..||..|..+.||++|+...  .+.+-|+++.
T Consensus       592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            3467899999999665556667778789999999999999865433  3468888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.46  E-value=1.1  Score=52.57  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIs-aLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      +|.+..+|.|.+.-+. -+.+.+|.-|..+++ ++||.|||++||.|=.||+ |++-|+..
T Consensus        35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~   93 (665)
T KOG4640|consen   35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK   93 (665)
T ss_pred             hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence            4556778999888887 667888887878887 9999999999999999876 99999864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.23  E-value=25  Score=44.70  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..|+|||-. +.+-.+=..-..-=.+++|-|+|.++|+--.+  +..|.+|.=      ||..          +--+.++
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr------NGL~----------hg~f~l~  284 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER------NGLR----------HGEFVLP  284 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec------CCcc----------ccccccC
Confidence            689999976 33222111222233479999999999986432  224778863      2111          1112222


Q ss_pred             cccccccEEEEEEccCCCEEEE---EeCCCeEEEEeCCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPF  463 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs---~S~dgTVhIwdl~~~  463 (787)
                      .-.....|..++|+.++..||+   .....-|.+|-+..|
T Consensus       285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            2212223889999999999999   444455999987654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=89.20  E-value=0.43  Score=53.10  Aligned_cols=74  Identities=14%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      .+.+.++.+.+++ |+|-.....-.......+|..-|+.+.+.++             + +|+.  ++     |      
T Consensus       161 ~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------------~-~LlS--~s-----G------  213 (390)
T KOG3914|consen  161 PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------------Y-LLLS--GS-----G------  213 (390)
T ss_pred             CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------------c-eeee--cC-----C------
Confidence            3567888888876 8888875544333445568888999998853             2 3333  21     1      


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS  193 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s  193 (787)
                                          +++|++||.++|++++++..++
T Consensus       214 --------------------D~tlr~Wd~~sgk~L~t~dl~s  235 (390)
T KOG3914|consen  214 --------------------DKTLRLWDITSGKLLDTCDLSS  235 (390)
T ss_pred             --------------------CCcEEEEecccCCcccccchhH
Confidence                                2699999999999999998765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=89.07  E-value=0.84  Score=50.22  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..+-.|-+-|+.++.. ..|. ..+.|.++.|.-.+.++..|...|. |-+.|++..-.    |        ..++...+
T Consensus       231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnq----G--------~~~~a~rl  295 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQ----G--------NGWCAQRL  295 (425)
T ss_pred             cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeeccc----C--------CCcceEEE
Confidence            3455677778877642 3343 5678999999999999998888775 88999964211    1        11344444


Q ss_pred             ecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCcc---ccccc
Q 003907          426 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTL  472 (787)
Q Consensus       426 ~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~---~~~~H  472 (787)
                      .   +...|+++..=. ++++|++++.+|+|++||+.-.++..   ...+|
T Consensus       296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence            3   334466665444 67899999999999999998665533   34455

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=88.79  E-value=14  Score=39.18  Aligned_cols=48  Identities=13%  Similarity=-0.077  Sum_probs=39.1

Q ss_pred             CCeEEE--EEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 003907          182 SHCYEH--VLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       182 tg~~v~--tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t  229 (787)
                      .|+..+  ++++.+...++.+...+|.+..++.|.||++.++++.+++..
T Consensus       216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence            555444  777888888888888788887788899999999999888874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=87.83  E-value=57  Score=37.42  Aligned_cols=47  Identities=15%  Similarity=0.277  Sum_probs=38.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECC
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDAL  219 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~  219 (787)
                      |..|+||+. +|+.+.++.+. +.|..+.|+.  ++|+|..++.+++||..
T Consensus        60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            457999997 68888888876 5899999977  56666777889999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=87.68  E-value=1.4  Score=34.90  Aligned_cols=30  Identities=20%  Similarity=0.471  Sum_probs=26.9

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          369 TSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      ..+|.+++|+|...+||.++.+|. |.||++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence            357999999999999999999886 899988

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=87.14  E-value=6.6  Score=36.85  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             eEEEEEC---CCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907          372 ISALCFD---PSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (787)
Q Consensus       372 IsaLaFS---pdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA  447 (787)
                      |++|++.   -|| +-|+.||+ +..||||+=.                   ..++++..   ...|.+|+=... ..++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~   57 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA   57 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence            5566654   343 36777888 5569999842                   36667653   346888887776 4589


Q ss_pred             EEeCCCeEEEEeC
Q 003907          448 IVSSKGTCHVFVL  460 (787)
Q Consensus       448 s~S~dgTVhIwdl  460 (787)
                      .+..+|||-||+-
T Consensus        58 Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   58 YALANGTVGVYDR   70 (111)
T ss_pred             EEecCCEEEEEeC
Confidence            9999999998864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.10  E-value=25  Score=42.95  Aligned_cols=46  Identities=11%  Similarity=0.035  Sum_probs=36.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecCC-------eEEEEeCCeEEEEEC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFDA  218 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~-------~LaV~~~~~I~iwD~  218 (787)
                      ++|.|-.+-+.+..+++.|.-++.+|++.|+       .+++|....+.++.-
T Consensus        93 Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er  145 (846)
T KOG2066|consen   93 GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER  145 (846)
T ss_pred             CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehh
Confidence            5899999999999999999999999999873       455554444777653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.47  E-value=2.5  Score=47.14  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=58.5

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~--~~~g~~~~~~~~s~~~l~~l  425 (787)
                      .+...|+|+.+++....... ...+....|||+|+.||-...  +.|.++++......  ...|.... ..+-..-+++-
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i-~nG~~dwvyeE   97 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGI-YNGVPDWVYEE   97 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTE-EESB--HHHHH
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccceeE-EcCccceeccc
Confidence            46789999999765443333 678899999999999998874  45888876431100  00010000 00000000000


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF  463 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~  463 (787)
                      .  + -..=..+-|||||++||....| ..|+.+.+..+
T Consensus        98 E--v-~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~  133 (353)
T PF00930_consen   98 E--V-FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY  133 (353)
T ss_dssp             H--T-SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred             c--c-cccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence            0  0 0001347899999999988754 44666665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.45  E-value=1.9  Score=47.94  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=44.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      .+.|-+||+++++.+..+....++.+|..+.    .++++.. +..+++||+.|++++.++..
T Consensus       268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            3689999999999999999988898888876    2334444 45799999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=84.49  E-value=55  Score=34.07  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCCCEEEEE
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIV  449 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg~~LAs~  449 (787)
                      ..-.|+++.+|++.++.-. +..|.++|-.        |          ..+.++.-..  ..+++++|. +|.+.|.+.
T Consensus       185 ~pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p~--~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELPV--PRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-SS--SSEEEEEEESTTSSEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCCC--CCEEEEEEECCCCCEEEEE
Confidence            3677999999998876655 4458888852        3          3555554331  368999994 787777776


Q ss_pred             eC
Q 003907          450 SS  451 (787)
Q Consensus       450 S~  451 (787)
                      +.
T Consensus       244 ta  245 (246)
T PF08450_consen  244 TA  245 (246)
T ss_dssp             EB
T ss_pred             eC
Confidence            54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=84.48  E-value=24  Score=39.72  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=32.5

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEe
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFR  398 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~~IrVWd  398 (787)
                      .++.+|.+.+.|..+++.+...+-+...+.+ ..+ .+| .|..++.+|+ +..++
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~-l~~~~  392 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGT-VYAIT  392 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCce-EEEEe
Confidence            3467899999999999988877654333332 122 244 5556677675 44444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.37  E-value=1.2  Score=55.19  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907          380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHVF  458 (787)
Q Consensus       380 dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~LAs~S~dgTVhIw  458 (787)
                      .+..+|.++..|+ +-.+|...                   .+..+.+|.. ...|.+++|+.||+.++.|-.+|-|.+|
T Consensus        98 ~~~~ivi~Ts~gh-vl~~d~~~-------------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~  157 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGH-VLLSDMTG-------------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVW  157 (1206)
T ss_pred             eeeeEEEEcCchh-hhhhhhhc-------------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEE
Confidence            5677888888676 67777632                   1221333322 3479999999999999999999999999


Q ss_pred             eCCCCCCcccccccc
Q 003907          459 VLSPFGGDSGFQTLS  473 (787)
Q Consensus       459 dl~~~gg~~~~~~H~  473 (787)
                      |+...+....+..|.
T Consensus       158 D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  158 DMHRAKILKVITEHG  172 (1206)
T ss_pred             EccCCcceeeeeecC
Confidence            998755554444443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.10  E-value=5.3  Score=48.73  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             ccccCCCceEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccC
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWN  416 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~p-IsaLaFSpdG~lLATaS~dG~----~IrVWdi~~~~~~~~~g~~~~~~~  416 (787)
                      ++.+..+|.|.+.+- .-+.+..|++|... |..|-...+-.+|++-.+|+.    .++||++....     ++      
T Consensus        38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n------  105 (933)
T KOG2114|consen   38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN------  105 (933)
T ss_pred             EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC------
Confidence            445677888877762 34456889999888 666655555579999998877    79999996521     11      


Q ss_pred             CcceEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907          417 SSHVHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       417 ~s~~~l~~l~-----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      .+..++++.+     -+....++.+++.|.|-+.+|+|-.+|+|..+.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            0123444332     232234689999999999999999999998874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.77  E-value=61  Score=38.15  Aligned_cols=55  Identities=9%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      +.++.+|.|++||-...+....|++-..+|..+..+.||+.++...  .+.+-|-++
T Consensus       445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT  499 (644)
T ss_pred             EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence            4567899999999855555667888889999999999999765332  345777776

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.50  E-value=4.7  Score=45.98  Aligned_cols=112  Identities=16%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             CCCceEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEE
Q 003907          346 DNAGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHL  422 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~-~v~~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s-~~~l  422 (787)
                      ..+|.+.|+|-.... ....+ +-|..||..+.+++.|..+++....| .|.-|.......... +  ..+|+-. ..-+
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr-~--~l~~~~K~eTdL  194 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPR-T--NLNFELKHETDL  194 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCcc-c--cccccccccchh
Confidence            456788888865433 33334 45999999999999999999888744 699998752110000 0  0111110 0123


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      |.+-.  ......++.|||||..+++-+.|.+|++|+....
T Consensus       195 y~f~K--~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  195 YGFPK--AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             hcccc--cccCccceEEccccCcccccCcccEEEEEEeccc
Confidence            33321  1235789999999999999999999999998753

>PRK02888 nitrous-oxide reductase; Validated

Probab=81.18  E-value=12  Score=45.03  Aligned_cols=105  Identities=9%  Similarity=0.056  Sum_probs=70.0

Q ss_pred             CceEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCCcceE
Q 003907          348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       348 dG~V~IwDl~s-----~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~s~~~  421 (787)
                      ++.|.|.|..+     .+.+..+.--. ....+++||||+++..++.-...+-|.|+..... ..  +.    .+.....
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~----~~~~~~v  367 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GK----IKPRDAV  367 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--cc----CCccceE
Confidence            46799999988     45666665433 3367899999999999988777899999864210 00  00    0000012


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+..-|..   -...+|.++|+...+-.-|..|-.|++..
T Consensus       368 vaevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            222222322   24588999999888888899999999975

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=81.12  E-value=4.1  Score=31.77  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=25.3

Q ss_pred             EEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907          434 IQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       434 I~slaFSpDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                      |.+|.|||+.   .+|+.+-..+-|||+|+..
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            7899999855   4899999999999999983

It contains a characteristic DLL sequence motif.

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.08  E-value=10  Score=45.67  Aligned_cols=97  Identities=11%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~--~l~  426 (787)
                      ..+.+++... .....+.+.  ..+.-.|+|||+.|++.+.....+++.+-..      .+           .++  .+.
T Consensus       379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~vd  438 (591)
T PRK13616        379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPVD  438 (591)
T ss_pred             eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEecc
Confidence            4566666532 222222332  3777899999999999987435555544211      01           222  221


Q ss_pred             cccc----cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC-CCCc
Q 003907          427 RGIT----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP-FGGD  466 (787)
Q Consensus       427 rG~~----~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~-~gg~  466 (787)
                      .|..    ...|.++.|||||++||... ++.|+|=-+.. .+|.
T Consensus       439 ~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        439 ASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             CchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            1111    23599999999999999887 46666644433 3443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=80.68  E-value=1.9  Score=51.39  Aligned_cols=95  Identities=15%  Similarity=0.289  Sum_probs=68.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      +.+.+|.|.||-+-.+.....+.  ...+-|.+|+|+.||+.++-.-+||. |.|=.+.        |+          +
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvd--------GN----------R  148 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVD--------GN----------R  148 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeec--------cc----------e
Confidence            45789999999998776444432  34567899999999999998888776 4443331        21          2


Q ss_pred             EE--EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          422 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       422 l~--~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ++  +| .|..   ...+.||+|.+.+..+-..|.+|++|..
T Consensus       149 IwgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  149 IWGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             ecchhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence            21  22 2322   3468899999999888899999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	787
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.92
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.91
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.89
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.87
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.87
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.86
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.85
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.85
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.85
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.84
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.84
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.84
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.83
3jro_A	753	Fusion protein of protein transport protein SEC13	99.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.83
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.83
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.82
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.82
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.82
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.82
2pm7_B	297	Protein transport protein SEC13, protein transport	99.82
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.82
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.81
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.8
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.8
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.8
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.8
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.8
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.79
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.79
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.79
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.78
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.77
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.77
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.76
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.75
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.74
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.73
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.73
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.72
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.7
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.7
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.7
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.69
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.68
3jro_A	753	Fusion protein of protein transport protein SEC13	99.68
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.64
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.62
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.57
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.48
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.47
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.46
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.42
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.42
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.42
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.38
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.37
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.37
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.32
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.32
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.31
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.27
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.26
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.26
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.24
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.24
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.21
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.18
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.15
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.14
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.13
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.06
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.06
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.01
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.93
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.9
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.37
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.32
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.31
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.11
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.1
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.07
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.07
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.01
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.0
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.89
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.83
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.82
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.79
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.7
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.5
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.22
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.19
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.19
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.66
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.42
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.32
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.82
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.13
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.48
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	92.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	92.3
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	89.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	89.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	88.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.23
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	87.16
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	87.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	86.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	85.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	84.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	84.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	84.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	84.12
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	84.11
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.87

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.2e-29  Score=269.43  Aligned_cols=241  Identities=20%  Similarity=0.245  Sum_probs=190.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ...|++.|..+.|+.       ++++|++|..+|++|||+++   ...+...+.+.+..+.+++.           .+  
T Consensus        15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~--   71 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR-----------TN--   71 (355)
T ss_dssp             ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT-----------SS--
T ss_pred             cccCCCceEEEEECC-------CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCC-----------CC--
Confidence            366889999999974       47899999999999999865   34445555556888888843           33  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCC
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT  211 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~  211 (787)
                      ++++++++                                +++|+|||+++++.+.++++++.|.+++++++.++++.++
T Consensus        72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~  119 (355)
T 3vu4_A           72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD  119 (355)
T ss_dssp             EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred             EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence            66654432                                2599999999999999999999999999999999999999


Q ss_pred             eEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCC
Q 003907          212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG  290 (787)
Q Consensus       212 ~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~  290 (787)
                      +|++||+.++ +.++++.+   +             .+.+++++.+||+++                             
T Consensus       120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~s-----------------------------  154 (355)
T 3vu4_A          120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYSN-----------------------------  154 (355)
T ss_dssp             EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEEE-----------------------------
T ss_pred             EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEeC-----------------------------
Confidence            9999999988 66665554   2             234566555555541                             


Q ss_pred             CceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc----------
Q 003907          291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----------  360 (787)
Q Consensus       291 g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----------  360 (787)
                                                                            +..+|.|+|||+.+++          
T Consensus       155 ------------------------------------------------------g~~~g~v~iwd~~~~~~~~~~~~~~~  180 (355)
T 3vu4_A          155 ------------------------------------------------------EFNLGQIHITKLQSSGSATTQDQGVQ  180 (355)
T ss_dssp             ------------------------------------------------------SSCTTCEEEEECCC------------
T ss_pred             ------------------------------------------------------CCcCcEEEEEECCCCCcccccccccc
Confidence                                                                  2346789999998765          


Q ss_pred             ------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 003907          361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI  434 (787)
Q Consensus       361 ------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I  434 (787)
                            .+..+.+|..+|.+++|+|+|++|||||.||+.|+|||+..       +          ..+.++++|.+...|
T Consensus       181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV  243 (355)
T ss_dssp             ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred             ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence                  26889999999999999999999999999775599999964       3          577888777556789


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       435 ~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+++|+|||++|++++.|++|+|||+...
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            99999999999999999999999999764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.7e-25  Score=237.15  Aligned_cols=290  Identities=12%  Similarity=0.134  Sum_probs=209.3

Q ss_pred             eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907           46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGC  123 (787)
Q Consensus        46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~  123 (787)
                      +.+.....+|++.|..+.|....   ..++..|++|..+| ++|||+.... .+...+..|.+.|.++.+.|+       
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-------   91 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-------   91 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-------
T ss_pred             hheeeecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-------
Confidence            33333467899999999996411   12356888888776 9999996532 123356788999999998863       


Q ss_pred             CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC
Q 003907          124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP  202 (787)
Q Consensus       124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~  202 (787)
                            .++|+..+.                                 +++|++||+++++.+.++..+ ..|..+++++
T Consensus        92 ------~~~l~s~s~---------------------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp  132 (321)
T 3ow8_A           92 ------LPIAASSSL---------------------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP  132 (321)
T ss_dssp             ------SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred             ------CCEEEEEeC---------------------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence                  246654221                                 369999999999999999754 5788999988


Q ss_pred             --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccC
Q 003907          203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNL  277 (787)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~l  277 (787)
                        ++|+++. ++.|++||+.+++...++..+...             ...++++|  ++||.++.+..+     ..|+..
T Consensus       133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i-----~iwd~~  194 (321)
T 3ow8_A          133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGII-----NIFDIA  194 (321)
T ss_dssp             TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETT
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECC
Confidence              6788765 568999999999988888765442             35688888  789988765211     123321


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~  357 (787)
                      +            +.++                +++.++.      .....+.++++.+    .+++++.||.|+|||+.
T Consensus       195 ~------------~~~~----------------~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~  236 (321)
T 3ow8_A          195 T------------GKLL----------------HTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQ  236 (321)
T ss_dssp             T------------TEEE----------------EEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETT
T ss_pred             C------------CcEE----------------EEEcccC------CceeEEEEcCCCC----EEEEEcCCCeEEEEECC
Confidence            1            1110                1111110      1122334444333    34578889999999999


Q ss_pred             CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 003907          358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI  437 (787)
Q Consensus       358 s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sl  437 (787)
                      +++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+..       +          .++.++. + +...|+++
T Consensus       237 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v  296 (321)
T 3ow8_A          237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGV  296 (321)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEE
T ss_pred             CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEEE
Confidence            99999999999999999999999999999999776 99999854       2          4666664 3 34579999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      +|+|||++|++++.|++|+|||+
T Consensus       297 ~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          297 KYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EECTTSSEEEEEETTCCEEEEEC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeC
Confidence            99999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=2e-25  Score=247.08  Aligned_cols=293  Identities=12%  Similarity=0.087  Sum_probs=203.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+|++.|..+.|..       ++.+|++|..+| ++|||++ .+++...+..|.++|.++.+.|+             ..
T Consensus       105 ~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~-------------~~  163 (410)
T 1vyh_C          105 SGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHS-------------GK  163 (410)
T ss_dssp             ECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTT-------------SS
T ss_pred             cccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCC-------------CC
Confidence            46888999999973       356888888876 9999996 46777888999999999999864             22


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~  208 (787)
                      +|+..+.                                 +++|++||+.+++++.++..+ ..|.++++++  +.|+++
T Consensus       164 ~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~  210 (410)
T 1vyh_C          164 LLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA  210 (410)
T ss_dssp             EEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEEeC---------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            6655331                                 258999999999999988755 5899999987  567765


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      . ++.|++||+.+++++.++..|..+             ...++++|  ++||.++.+..+     ..|+..+......-
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~~g~~l~s~s~D~~v-----~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTV-----RVWVVATKECKAEL  272 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTTCCEEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEeCCCcc-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECCCCceeeEe
Confidence            4 668999999999999988876653             34567776  788887765211     12332221000000


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC-----CccccccccccccCCCceEEEEECCCCc
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN-----SVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s-----~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                      ...........                       +.|++........     ......+..+++++.||+|+|||+.+++
T Consensus       273 ~~h~~~v~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          273 REHRHVVECIS-----------------------WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             CCCSSCEEEEE-----------------------ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             cCCCceEEEEE-----------------------EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            00000000000                       0111000000000     0000011235578899999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      .+..+.+|..+|.+++|+|+|++|+|++.|| .|+|||+..       +          .++..+. + +...|++++|+
T Consensus       330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~~  389 (410)
T 1vyh_C          330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFH  389 (410)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEEC
T ss_pred             eEEEEECCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEEc
Confidence            9999999999999999999999999999966 599999854       2          3445554 3 34579999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeC
Q 003907          441 HYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl  460 (787)
                      ||+++|++++.|++|+||++
T Consensus       390 ~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          390 KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSSSCEEEEETTSEEEEEC-
T ss_pred             CCCCEEEEEeCCCcEEEEeC
Confidence            99999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=1.9e-24  Score=232.39  Aligned_cols=254  Identities=14%  Similarity=0.116  Sum_probs=190.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.             
T Consensus        51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~-------------  109 (340)
T 1got_B           51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG-------------  109 (340)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS-------------
T ss_pred             ecCCCCceEEEEECC-------CCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC-------------
Confidence            567999999999963       367888888877 99999964 55666778889999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC----eEEEEEeCC-CcEEEEEecC-Ce
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH----CYEHVLRFR-SSVCMVRCSP-RI  204 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg----~~v~tL~f~-s~V~sV~~s~-~~  204 (787)
                      .+|++.+.                                 +++|++||+.++    +....+..+ ..|..+.+++ ..
T Consensus       110 ~~l~s~~~---------------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  156 (340)
T 1got_B          110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ  156 (340)
T ss_dssp             SEEEEEET---------------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence            26654221                                 268999999876    355566544 5899998876 44


Q ss_pred             EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      |++ +.++.|++||+.+++.+.++..|..+             ...++++|       +.                    
T Consensus       157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~--------------------  196 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLSLAP-------DT--------------------  196 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEEEECC-------CC--------------------
Confidence            554 55678999999999988877765542             22333322       10                    


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                              .                                                .+++++.||.|+|||+.+++.+.
T Consensus       197 --------~------------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~  220 (340)
T 1got_B          197 --------R------------------------------------------------LFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             --------S------------------------------------------------EEEEEETTSCEEEEETTTCSEEE
T ss_pred             --------C------------------------------------------------EEEEEeCCCcEEEEECCCCeeEE
Confidence                    0                                                01234568999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .+.+|..+|.+++|+|+|++||+++.||+ |+|||+..       +          ..+..+........|.+++|+|||
T Consensus       221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred             EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence            99999999999999999999999999776 99999854       2          344444322222369999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ++|++++.|++|+|||+........+.+|.
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence            999999999999999998765555566674

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=7.5e-25  Score=238.21  Aligned_cols=281  Identities=14%  Similarity=0.082  Sum_probs=189.8

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccC----------CCceeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVED----------ASNFNELVSKRDGPVSFLQMQPFPVKDDGC  123 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~----------~~~~~ells~~dg~V~~v~~lP~P~~~~~~  123 (787)
                      .+...|..+.|..       ++++|+.|.+..+++||...          ........-.++.+|..+++.|+       
T Consensus        28 ~~~~~v~~~~fs~-------dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------   93 (344)
T 4gqb_B           28 CMERQLEAARYRS-------DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-------   93 (344)
T ss_dssp             SCCSEEEEEEECT-------TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-------
T ss_pred             cccCCEEEEEECC-------CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-------
Confidence            3556789999964       47888888877788887421          01111122234578999999874       


Q ss_pred             CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEEE
Q 003907          124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMV  198 (787)
Q Consensus       124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-----f~s~V~sV  198 (787)
                            + .|++.+ +                                +++|+|||+.+++.+..++     +...|.+|
T Consensus        94 ------~-~l~~~s-~--------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v  133 (344)
T 4gqb_B           94 ------R-GILVAS-D--------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTV  133 (344)
T ss_dssp             ------T-EEEEEE-T--------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEE
T ss_pred             ------C-eEEEEE-C--------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEE
Confidence                  1 344322 1                                2689999999998766554     34689999


Q ss_pred             EecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCccee
Q 003907          199 RCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       199 ~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~  272 (787)
                      +|++  ++|+++. ++.|++||+.+++.+.++.+|..+             ...++++|   ..|+.++.+..     ..
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~~~~~~l~s~s~D~~-----v~  195 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASPHKDSVFLSCSEDNR-----IL  195 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECSSCTTEEEEEETTSC-----EE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eEEEEecCCCCCceeeeccccc-----cc
Confidence            9987  6788765 567999999999999999887663             35678876   46777765421     12


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                      .|+..++....                            ++...    ........+.+++..   ...++.+..||+|+
T Consensus       196 iwd~~~~~~~~----------------------------~~~~~----~~~~~~~~~~~~p~~---~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          196 LWDTRCPKPAS----------------------------QIGCS----APGYLPTSLAWHPQQ---SEVFVFGDENGTVS  240 (344)
T ss_dssp             EEETTSSSCEE----------------------------ECC--------CCCEEEEEECSSC---TTEEEEEETTSEEE
T ss_pred             cccccccceee----------------------------eeecc----eeeccceeeeecCCC---CcceEEeccCCcEE
Confidence            34433221100                            00000    000000111222211   11234677899999


Q ss_pred             EEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907          353 VKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (787)
Q Consensus       353 IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~  431 (787)
                      |||+.+++.+.++.+|..+|.+|+|+|+| ++|||+|.|++ |+|||+..       +           .+.++. | |.
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~~-~-H~  299 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRSQ-A-HR  299 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEEC-C-CS
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEEc-C-CC
Confidence            99999999999999999999999999998 58999999776 99999853       2           445553 4 34


Q ss_pred             ccEEEEEEccCCC-EEEEEeCCCeEEEEeCCC
Q 003907          432 ATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       432 a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~  462 (787)
                      ..|++|+||||++ +|+++|.|++|++|++..
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            5799999999986 577899999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=8.9e-24  Score=223.55  Aligned_cols=252  Identities=13%  Similarity=0.070  Sum_probs=186.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|..       +++.|++|..+| ++|||++. +.....+..|.++|..+++.|+.             
T Consensus         9 ~~~h~~~V~~~~fsp-------~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~-------------   67 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARK-------------   67 (304)
T ss_dssp             EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred             ecCCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCC-------------
Confidence            456888999999973       356777777776 99999964 55666778889999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV  207 (787)
                      .+|++.+.                                 +++|++||+++++.+.+++.+ ..|.+|++++  ++|++
T Consensus        68 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  114 (304)
T 2ynn_A           68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS  114 (304)
T ss_dssp             TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence            26654221                                 268999999999999999865 5899999988  56777


Q ss_pred             Ee-CCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          208 GL-ATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l-~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      +. ++.|++||+.+...+ .++..|..+             ...++++|       .+                      
T Consensus       115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~----------------------  152 (304)
T 2ynn_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD----------------------  152 (304)
T ss_dssp             EETTSCEEEEEGGGTTEEEEEECCCCSC-------------EEEEEECT-------TC----------------------
T ss_pred             ECCCCeEEEEECCCCcchhhhhcccCCc-------------EEEEEECC-------CC----------------------
Confidence            65 567999999877433 444444432             12233322       10                      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                           +.                                                .++++..||+|+|||+.+......+
T Consensus       153 -----~~------------------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~  179 (304)
T 2ynn_A          153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL  179 (304)
T ss_dssp             -----TT------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcccee
Confidence                 00                                                0123457899999999887766555


Q ss_pred             c-cCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       366 ~-aH~~pIsaLaFSp--dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      . +|...|..++|+|  ++.+|||++.|+ .|+|||+..       +          .++..+. | +...|.+++|+||
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~p~  239 (304)
T 2ynn_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT  239 (304)
T ss_dssp             ECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred             ccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCC-------C----------ccceeeC-C-CCCCEEEEEECCC
Confidence            4 5778999999987  788999999966 599999964       2          4666665 4 3457999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                      +++|++++.||+|+|||+........+..|
T Consensus       240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            999999999999999999876554444444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=9e-24  Score=230.64  Aligned_cols=223  Identities=14%  Similarity=0.114  Sum_probs=163.1

Q ss_pred             cEEEEEccCCCceeEeeee--------ccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCc
Q 003907           85 GFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV  156 (787)
Q Consensus        85 G~qVWdv~~~~~~~ells~--------~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~  156 (787)
                      .+|+|+++...+..+.+..        ++..|++++|.|+.           +  +||+++++                 
T Consensus       105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-----------~--~la~as~~-----------------  154 (365)
T 4h5i_A          105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-----------T--VAAIASSK-----------------  154 (365)
T ss_dssp             CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-----------S--CEEEEESC-----------------
T ss_pred             cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-----------C--EEEEEECC-----------------
Confidence            4999999765544443332        23568999998863           2  66665532                 


Q ss_pred             ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcc
Q 003907          157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQ  234 (787)
Q Consensus       157 r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~  234 (787)
                                    .+++|+|||+++++++.+++....|++|+|+|  ++|+++.++.+.+|+..+++.+......... 
T Consensus       155 --------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~-  219 (365)
T 4h5i_A          155 --------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN-  219 (365)
T ss_dssp             --------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT-
T ss_pred             --------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC-
Confidence                          14799999999999999999999999999998  6899998899999999988765543321110 


Q ss_pred             cCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907          235 LAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (787)
Q Consensus       235 ~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt  312 (787)
                                .....++++|  ++|+.++.+                                                 
T Consensus       220 ----------~~v~~v~fspdg~~l~~~s~d-------------------------------------------------  240 (365)
T 4h5i_A          220 ----------WSLSKINFIADDTVLIAASLK-------------------------------------------------  240 (365)
T ss_dssp             ----------EEEEEEEEEETTEEEEEEEES-------------------------------------------------
T ss_pred             ----------CCEEEEEEcCCCCEEEEEecC-------------------------------------------------
Confidence                      0123345544  233332210                                                 


Q ss_pred             ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~----v~~~~aH~~pIsaLaFSpdG~lLATaS  388 (787)
                                                      ......+++||+.....    ...+.+|..+|++|+|||||++||+|+
T Consensus       241 --------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          241 --------------------------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             --------------------------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             --------------------------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence                                            01123577788766542    456789999999999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .|++ |+|||+..       +          ..+.++.+|+ ...|++|+|||||++||++|.|+||+||+|.+
T Consensus       289 ~D~~-V~iwd~~~-------~----------~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNS-IALVKLKD-------L----------SMSKIFKQAH-SFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSC-EEEEETTT-------T----------EEEEEETTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCE-EEEEECCC-------C----------cEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9776 99999864       3          5677776664 45799999999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=8.2e-24  Score=230.03  Aligned_cols=285  Identities=12%  Similarity=0.033  Sum_probs=184.9

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------Cc-EEEEEccCCCce---eEeeeeccCcEEEEEEecCCCCCCC
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDG  122 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~------~G-~qVWdv~~~~~~---~ells~~dg~V~~v~~lP~P~~~~~  122 (787)
                      ..|...|..+.|..       +++.|++|..      +| +++|+.......   ......|.+.|..+++.|+.     
T Consensus        39 ~~H~~~V~~v~fSp-------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-----  106 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-----  106 (357)
T ss_dssp             -CCCSEEEEEEECS-------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----
T ss_pred             ccccCCEEEEEECC-------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----
Confidence            45888999999963       5789999986      33 788887442211   22234577889999999741     


Q ss_pred             CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEE
Q 003907          123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM  197 (787)
Q Consensus       123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-----f~s~V~s  197 (787)
                              .+| +.+.                                 +++|+|||+.+++.+...+     +...|.+
T Consensus       107 --------~~l-~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~  144 (357)
T 4g56_B          107 --------GIL-VASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT  144 (357)
T ss_dssp             --------EEE-EEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred             --------CEE-EEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence                    143 3221                                 2579999999988664432     3468999


Q ss_pred             EEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcce
Q 003907          198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGR  271 (787)
Q Consensus       198 V~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~  271 (787)
                      |++++  ++|+++. ++.|++||+.+++.+..+..|..+             ...++++|   ..++.++.+..     .
T Consensus       145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~~~~~s~~~dg~-----v  206 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACPGKDTIFLSCGEDGR-----I  206 (357)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTCSSCEEEEETTSC-----E
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEccCCCceeeeeccCCc-----e
Confidence            99988  5777765 567999999999998888776553             35677876   46666655421     1


Q ss_pred             eccccCCCCCcC-CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCce
Q 003907          272 LSPQNLTPSGVS-PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI  350 (787)
Q Consensus       272 ~s~q~lt~~~~s-~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~  350 (787)
                      ..|+..++.... .....                                 .......+.++++..   ..++.+..||.
T Consensus       207 ~~wd~~~~~~~~~~~~~~---------------------------------~~~~v~~v~~sp~~~---~~la~g~~d~~  250 (357)
T 4g56_B          207 LLWDTRKPKPATRIDFCA---------------------------------SDTIPTSVTWHPEKD---DTFACGDETGN  250 (357)
T ss_dssp             EECCTTSSSCBCBCCCTT---------------------------------CCSCEEEEEECTTST---TEEEEEESSSC
T ss_pred             EEEECCCCceeeeeeecc---------------------------------ccccccchhhhhccc---ceEEEeecccc
Confidence            234433221100 00000                                 000011122222211   12446778999


Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      |+|||+.+++.+..+.+|..+|.+|+|+|+| ++|||+|.||+ |+|||+..       +          +.+ ... + 
T Consensus       251 i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~-~~~-~-  309 (357)
T 4g56_B          251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVF-RDL-S-  309 (357)
T ss_dssp             EEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEE-EEC-C-
T ss_pred             eeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEe-EEC-C-
Confidence            9999999999999999999999999999987 68999999776 99999854       2          233 332 4 


Q ss_pred             ccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          430 TSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       430 ~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +...|++|+||| |+++||+++.||+|+||++...+..
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            456799999998 8999999999999999999765543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=2.3e-23  Score=219.62  Aligned_cols=263  Identities=11%  Similarity=0.092  Sum_probs=180.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~-~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|+.       +++.|++|..+| ++|||++.. .++...+..|.++|..|++.|..           .
T Consensus         5 ~~~h~~~V~~~~~s~-------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~   66 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDY-------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   66 (297)
T ss_dssp             CCSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred             ccCCcCceEEEEECC-------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence            567899999999974       366788888776 999999642 35667788999999999997521           1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecC----
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP----  202 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f-~s~V~sV~~s~----  202 (787)
                      ..+||..+.                                 +++|+|||+++++  .+.++.. ...|.+|++++    
T Consensus        67 g~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g  113 (297)
T 2pm7_B           67 GTILASCSY---------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  113 (297)
T ss_dssp             CSEEEEEET---------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEEcC---------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence            126655331                                 3699999999874  5566664 46899999987    


Q ss_pred             CeEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          203 RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                      ++|+++. ++.|++||+.+.+.  ...+..|..+             ...++++|......         +.        
T Consensus       114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~~~p~~~~~~---------~~--------  163 (297)
T 2pm7_B          114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEED---------GE--------  163 (297)
T ss_dssp             SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred             cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEeecCCccccc---------cc--------
Confidence            3677655 56899999987642  2334444332             23344433110000         00        


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                 +                 .           .+              .....++++..||+|+|||+.++
T Consensus       164 -----------~-----------------~-----------~~--------------~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          164 -----------H-----------------N-----------GT--------------KESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             -----------------------------------------------------------CCEEEEEETTSCEEEEEEETT
T ss_pred             -----------C-----------------C-----------CC--------------CCcceEEEEcCCCcEEEEEEcCC
Confidence                       0                 0           00              00012345678999999999876


Q ss_pred             c----EEEEeccCCCCeEEEEECCCC---CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       360 ~----~v~~~~aH~~pIsaLaFSpdG---~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                      +    .+..+.+|..+|.+|+|+|++   .+|||+|.|++ |+|||+....     +         ......+....+..
T Consensus       191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-----~---------~~~~~~~~~~~~~~  255 (297)
T 2pm7_B          191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD  255 (297)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred             CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-----C---------ccceeeeecccCCC
Confidence            5    677899999999999999995   89999999776 9999985310     1         01111221112345


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .|++++|+|||++||+++.|++|+||+....
T Consensus       256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          256 VLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            7999999999999999999999999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=3.5e-23  Score=224.59  Aligned_cols=256  Identities=11%  Similarity=0.038  Sum_probs=188.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..+...|..+++.|+.             
T Consensus        60 l~gH~~~V~~~~~s~-------d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g-------------  118 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCK-------DKRRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSG-------------  118 (354)
T ss_dssp             EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTS-------------
T ss_pred             ecCCCCeEEEEEECC-------CCCEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCC-------------
Confidence            567999999999974       356888888887 89999854 55667777888899999998752             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEe-CCCcEEEEEecC-
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLR-FRSSVCMVRCSP-  202 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg------~~v~tL~-f~s~V~sV~~s~-  202 (787)
                      .+||. ++                                .++++++|++...      .....+. +...|.++.|++ 
T Consensus       119 ~~las-g~--------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  165 (354)
T 2pbi_B          119 CAIAC-GG--------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS  165 (354)
T ss_dssp             SEEEE-ES--------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred             CEEEE-ee--------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence            25554 21                                1368999998643      2344454 446899999987 


Q ss_pred             -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       +.|+++ .++.|++||+.+++.+.++..|..+             ...+++.|       +.                 
T Consensus       166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-----------------  208 (354)
T 2pbi_B          166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCLDLAP-------SE-----------------  208 (354)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECC-------CS-----------------
T ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEEEEEe-------CC-----------------
Confidence             456654 5678999999999998888876542             12223211       10                 


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                              . |.                                                .+++++.||.|++||+.+++
T Consensus       209 --------~-g~------------------------------------------------~l~sgs~Dg~v~~wd~~~~~  231 (354)
T 2pbi_B          209 --------T-GN------------------------------------------------TFVSGGCDKKAMVWDMRSGQ  231 (354)
T ss_dssp             --------S-CC------------------------------------------------EEEEEETTSCEEEEETTTCC
T ss_pred             --------C-CC------------------------------------------------EEEEEeCCCeEEEEECCCCc
Confidence                    0 00                                                11244678999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      .+..+.+|..+|.+++|+|+|.+|||++.||+ |+|||+..       +          ..+..+........+.+++|+
T Consensus       232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence            99999999999999999999999999999776 99999854       1          234444322222358999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      |||++|++++.|++|+|||+........+..|.
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            999999999999999999997654444455664

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.92  E-value=3.2e-23  Score=241.19  Aligned_cols=336  Identities=14%  Similarity=0.092  Sum_probs=205.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..    +  .+..|++|..++ +++||.. .+++...+..|.+.|.++++.|+.             
T Consensus       143 l~gh~~~v~~v~f~p----~--~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg-------------  202 (611)
T 1nr0_A          143 LTGQARAMNSVDFKP----S--RPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDG-------------  202 (611)
T ss_dssp             CCCCSSCEEEEEECS----S--SSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred             ecCCCCCceEEEECC----C--CCeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCC-------------
Confidence            467889999999963    1  133577777765 9999985 466777888999999999999752             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--------CCCcEEEEEecC
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------FRSSVCMVRCSP  202 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~--------f~s~V~sV~~s~  202 (787)
                      .+||..+.                                 +++|+|||+++++.+.++.        +...|.+|+|++
T Consensus       203 ~~las~s~---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          203 SLFASTGG---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             SEEEEEET---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             CEEEEEEC---------------------------------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence            26665332                                 2589999999999998883        446899999987


Q ss_pred             --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC---------------------------C---CCccccccccce
Q 003907          203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA---------------------------G---QGAVGINVGYGP  249 (787)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~---------------------------~---~~~~~~~~~~~~  249 (787)
                        ++|+++. ++.|++||+.+++++.++..+......                           .   ....+-......
T Consensus       250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~  329 (611)
T 1nr0_A          250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA  329 (611)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence              5777655 567999999999887776532110000                           0   000000012346


Q ss_pred             eEEcc--ceEEEecCCc--eecCc--ceecc---ccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc---ccc-------
Q 003907          250 MAVGP--RWLAYASNTL--LLSNS--GRLSP---QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA---GLS-------  310 (787)
Q Consensus       250 lAlsp--r~LAyas~~~--~l~~~--g~~s~---q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~---G~~-------  310 (787)
                      ++++|  ++||.++.+.  .+++.  +....   +..........++++ +.++ ....|....+..   +..       
T Consensus       330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~  407 (611)
T 1nr0_A          330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF-TVSWDDHLKVVPAGGSGVDSSKAVA  407 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEE-EEETTTEEEEECSSSSSSCTTSCCE
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC-CcEE-EEEcCCceEEeecCCccccccceee
Confidence            78888  7888887652  22221  11100   000001111122222 2222 122221111100   000       


Q ss_pred             eeecccc--cccCCCC--------------------------CCCCcccCCccccccccccccCCCceEEEEECCCCcE-
Q 003907          311 KTLSKYC--QELLPDG--------------------------SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-  361 (787)
Q Consensus       311 ktls~~~--~~l~p~~--------------------------s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-  361 (787)
                      ..+....  -.+.|++                          ....+.++++++    .++.+..||+|+|||+.++.. 
T Consensus       408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~----~lasgs~D~~v~lwd~~~~~~~  483 (611)
T 1nr0_A          408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ----FVAVGGQDSKVHVYKLSGASVS  483 (611)
T ss_dssp             EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC----EEEEEETTSEEEEEEEETTEEE
T ss_pred             eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC----EEEEeCCCCeEEEEEccCCcee
Confidence            0000000  0001111                          112334444443    356788999999999987653 


Q ss_pred             -EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          362 -ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       362 -v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                       +.. .+|..+|.+|+|||||++||+++.|++ |++||+...      +          ..+.....+.|...|.+++||
T Consensus       484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~------~----------~~~~~~~~~~H~~~V~~v~fs  545 (611)
T 1nr0_A          484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN------F----------ELAHTNSWTFHTAKVACVSWS  545 (611)
T ss_dssp             EEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT------T----------EESCCCCCCCCSSCEEEEEEC
T ss_pred             eeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC------C----------ceeeeeeeeecccceeEEEEC
Confidence             334 689999999999999999999999776 999998531      1          111110122245679999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      |||++||++|.|++|+||+++...
T Consensus       546 pdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          546 PDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTT
T ss_pred             CCCCEEEEEECCCcEEEEECCCcc
Confidence            999999999999999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.92  E-value=2.1e-22  Score=216.36  Aligned_cols=236  Identities=12%  Similarity=0.100  Sum_probs=176.0

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      .+...|..+.|..       +++.|++|..+| ++|||+....   .+...+..|.+.|.++.+.|+            .
T Consensus        95 ~~~~~v~~~~~s~-------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------~  155 (340)
T 1got_B           95 LRSSWVMTCAYAP-------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD------------N  155 (340)
T ss_dssp             CSSSCEEEEEECT-------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET------------T
T ss_pred             cCCccEEEEEECC-------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC------------C
Confidence            3556677777753       356788887776 8999996532   234456778899999998863            1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVA  206 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~La  206 (787)
                        .|+..+.                                 +++|++||+++++.+.++..+ ..|.++++++  ++|+
T Consensus       156 --~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          156 --QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             --cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence              3443221                                 258999999999999999855 6899999988  5677


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      ++. ++.|++||+.+++...++..|..+             ...++++|       +.                      
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~----------------------  238 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFP-------NG----------------------  238 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEECT-------TS----------------------
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEEcC-------CC----------------------
Confidence            655 668999999999988887766542             23344433       10                      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                           .                                                 .+++++.||+|+|||+.+++.+..+
T Consensus       239 -----~-------------------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          239 -----N-------------------------------------------------AFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             -----S-------------------------------------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             -----C-------------------------------------------------EEEEEcCCCcEEEEECCCCcEEEEE
Confidence                 0                                                 0123456899999999998887777


Q ss_pred             cc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          366 KA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       366 ~a--H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      ..  |...|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+. | +...|.+++|+|||
T Consensus       265 ~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~s~dg  324 (340)
T 1got_B          265 SHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALK-------A----------DRAGVLA-G-HDNRVSCLGVTDDG  324 (340)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-C-CSSCEEEEEECTTS
T ss_pred             ccCCcccceEEEEECCCCCEEEEECCCC-eEEEEEccc-------C----------cEeeEee-c-CCCcEEEEEEcCCC
Confidence            53  345899999999999999999966 499999854       2          3555554 4 34579999999999


Q ss_pred             CEEEEEeCCCeEEEEe
Q 003907          444 QWIAIVSSKGTCHVFV  459 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwd  459 (787)
                      ++||+++.|++|+|||
T Consensus       325 ~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          325 MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEcCCccEEecC
Confidence            9999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.92  E-value=3e-22  Score=213.57  Aligned_cols=238  Identities=11%  Similarity=0.152  Sum_probs=177.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.             
T Consensus        61 ~~~h~~~v~~~~~s~-------dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------  119 (319)
T 3frx_A           61 FKGHSHIVQDCTLTA-------DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKA-------------  119 (319)
T ss_dssp             EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS-------------
T ss_pred             EeCCcccEEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCC-------------
Confidence            457888888888863       367888888776 99999964 66777788899999999998642             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecCC------
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR------  203 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~~------  203 (787)
                      .+|+..+.                                 +++|++||++ ++++.++. +...|..+++.+.      
T Consensus       120 ~~l~s~s~---------------------------------D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A          120 SMIISGSR---------------------------------DKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             CEEEEEET---------------------------------TSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            25654221                                 2689999997 45666665 4468999999872      


Q ss_pred             --eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCC
Q 003907          204 --IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       204 --~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                        .|+++ .++.|++||+.+++...++..|..+             ...++++|  ++|                     
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~sp~g~~l---------------------  211 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN-------------INTLTASPDGTLI---------------------  211 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC-------------EEEEEECTTSSEE---------------------
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCc-------------EEEEEEcCCCCEE---------------------
Confidence              55654 4668999999999877777666542             22344433  111                     


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                                                                                      ++++.||+|+|||+.+
T Consensus       212 ----------------------------------------------------------------~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          212 ----------------------------------------------------------------ASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             ----------------------------------------------------------------EEEETTCEEEEEETTT
T ss_pred             ----------------------------------------------------------------EEEeCCCeEEEEECCC
Confidence                                                                            2345689999999999


Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc------cccc
Q 003907          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG------ITSA  432 (787)
Q Consensus       359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG------~~~a  432 (787)
                      ++.+..+..| .+|.+++|+|+|.+||+++.+  .|+||++.+.                 ..+..++..      .+..
T Consensus       228 ~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~--~i~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          228 KKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT--GIKVFSLDPQ-----------------YLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             TEEEEEEECC-SCEEEEEECSSSSEEEEEETT--EEEEEEETTE-----------------EEEEEECCCCTTCCGGGCC
T ss_pred             CcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC--CcEEEEeCcC-----------------eeeeccCccccccccCcCc
Confidence            9999998865 689999999999999998863  3999998541                 233344321      1123


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .|.+++|||||++|++++.|++|+||++.+
T Consensus       288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            589999999999999999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.92  E-value=5.7e-22  Score=211.42  Aligned_cols=246  Identities=17%  Similarity=0.164  Sum_probs=181.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----ceeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~----~~~ells~~dg~V~~v~~lP~P~~~~~~d~F  126 (787)
                      .++|++.|..+.|..      ..+++|++|..+| ++|||+....    .....+..|.++|..+.+.|+.         
T Consensus        13 l~gH~~~V~~l~~~~------~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------   77 (319)
T 3frx_A           13 LEGHNGWVTSLATSA------GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------   77 (319)
T ss_dssp             ECCCSSCEEEEEECS------SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred             EccccceEEEEEccC------CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence            578999999999963      1246788888776 9999996432    1234577889999999998742         


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R  203 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~  203 (787)
                          .+|+..+.                                 +++|+|||+++++.+.++..+ ..|.+|++++  +
T Consensus        78 ----~~l~s~s~---------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~  120 (319)
T 3frx_A           78 ----AYALSASW---------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS  120 (319)
T ss_dssp             ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred             ----CEEEEEeC---------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence                26654321                                 369999999999999999755 6899999987  5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       204 ~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      +|+++. ++.|++||+. ++.+.++..|..+             ...+++.|       ...       .          
T Consensus       121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~~~~~~-------~~~-------~----------  162 (319)
T 3frx_A          121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQVRVVP-------NEK-------A----------  162 (319)
T ss_dssp             EEEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEEEEECC-------C--------------------
T ss_pred             EEEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEEEEEcc-------CCC-------C----------
Confidence            677655 5689999986 4556666555432             11222211       100       0          


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                          . .                                                ....++++..||+|++||+.+.+..
T Consensus       163 ----~-~------------------------------------------------~~~~l~s~~~d~~i~~wd~~~~~~~  189 (319)
T 3frx_A          163 ----D-D------------------------------------------------DSVTIISAGNDKMVKAWNLNQFQIE  189 (319)
T ss_dssp             --------------------------------------------------------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred             ----C-C------------------------------------------------CccEEEEEeCCCEEEEEECCcchhh
Confidence                0 0                                                0001234567999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      ..+.+|..+|.+++|+|+|++|||++.||+ |+|||+..       +          ..++.+..   ...|.+++|+||
T Consensus       190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~~---~~~v~~~~~sp~  248 (319)
T 3frx_A          190 ADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAA-------K----------KAMYTLSA---QDEVFSLAFSPN  248 (319)
T ss_dssp             EEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTT-------T----------EEEEEEEC---CSCEEEEEECSS
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEecC---CCcEEEEEEcCC
Confidence            999999999999999999999999999664 99999854       2          45666642   346999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC
Q 003907          443 SQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~  462 (787)
                      +++|++++.+ .++||++++
T Consensus       249 ~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          249 RYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             SSEEEEEETT-EEEEEEETT
T ss_pred             CCEEEEEcCC-CcEEEEeCc
Confidence            9999998865 599999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=3.6e-22  Score=218.17  Aligned_cols=276  Identities=11%  Similarity=0.071  Sum_probs=187.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..|...|..+++.|+.             
T Consensus        62 l~gH~~~V~~~~~sp-------~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g-------------  120 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTP-------EKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNG-------------  120 (380)
T ss_dssp             ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTS-------------
T ss_pred             ccccccEEEEEEEcC-------CCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCC-------------
Confidence            567999999999963       356788888877 99999954 66667788899999999998752             


Q ss_pred             cEEEEEEcCCCCC-----CC---CC------CCcCCCCCcccCCcCCCCCCC---CCCCCEEEEEECCCCeEEEEEe---
Q 003907          131 PFLLVVAGEDTNT-----LA---PG------QNRSHLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLR---  190 (787)
Q Consensus       131 pLLavV~~d~~~~-----~~---~~------~~~~~~~~~r~g~~~~~~~~~---~~~p~tVrlWdlktg~~v~tL~---  190 (787)
                      .+||..+.|+...     ..   ..      ...+|.+.+..-.+.+..+..   ...+++|++||+++++.+..+.   
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            2555422221100     00   00      001111112111111111111   1246899999999999998883   


Q ss_pred             ---CCCcEEEEEecC---CeEEEEe-CCeEEEEECC-CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecC
Q 003907          191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN  262 (787)
Q Consensus       191 ---f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~  262 (787)
                         +...|.++.+++   ++|+++. ++.|++||+. +.+.+.++.+|..+             ...++++|       +
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~  260 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKFFP-------D  260 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEECT-------T
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEEec-------C
Confidence               235799999965   6777755 6689999997 44556666655442             23344433       1


Q ss_pred             CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc
Q 003907          263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG  342 (787)
Q Consensus       263 ~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~  342 (787)
                      .                           .                                                 .+
T Consensus       261 ~---------------------------~-------------------------------------------------~l  264 (380)
T 3iz6_a          261 G---------------------------Q-------------------------------------------------RF  264 (380)
T ss_dssp             S---------------------------S-------------------------------------------------EE
T ss_pred             C---------------------------C-------------------------------------------------eE
Confidence            0                           0                                                 01


Q ss_pred             cccCCCceEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~-------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      ++++.||+|+|||+.+++.+..+..|..       .|.+++|+|+|++|++++.||. |+|||+..       +      
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------  330 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------  330 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence            2345689999999999998888876533       4899999999999999999776 99999853       2      


Q ss_pred             CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       416 ~~s~~~l~~l~---rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                          ..+..+.   .+ +...|.+++|||||++|+++|.|++|+||++...
T Consensus       331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence                3444442   23 4457999999999999999999999999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.91  E-value=2.2e-22  Score=228.71  Aligned_cols=303  Identities=18%  Similarity=0.197  Sum_probs=205.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .++...|..+.|..       +++.|++|..++ +++||.  .+++.+.+..|.++|..+.+.|+.             .
T Consensus       259 ~~~~~~v~~v~~~~-------d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~~-------------~  316 (577)
T 2ymu_A          259 TGHSSSVNGVAFRP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDG-------------Q  316 (577)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred             ecCCCCEEEEEEcC-------CCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCCC-------------C
Confidence            34566677777742       366788887776 999997  356777888899999999998742             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~  208 (787)
                      +|+..+.                                 +++|++||+... .+..+. +...|.++++++  +.|+++
T Consensus       317 ~l~t~~~---------------------------------d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          317 TIASASD---------------------------------DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             EEEEEET---------------------------------TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEeC---------------------------------CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            6654321                                 258999998654 455565 456899999987  678877


Q ss_pred             eC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCc-ceeccccCC---C
Q 003907          209 LA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNS-GRLSPQNLT---P  279 (787)
Q Consensus       209 ~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~-g~~s~q~lt---~  279 (787)
                      .. +.|++||. +++.+.++..|..+             ...++++|  ++||+++.+.  .+++. +.. .+.+.   .
T Consensus       363 ~~dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~  427 (577)
T 2ymu_A          363 SDDKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSS  427 (577)
T ss_dssp             ETTSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCE-EEEEECCSS
T ss_pred             eCCCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCE-EEEecCCCC
Confidence            64 57999995 67778888766543             35688888  7899887653  23321 111 11111   1


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhh---cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la---~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl  356 (787)
                      ......++|++..++. ...|....+.   ....+++.++      ......+.++++.+    .++.+..||.|+|||.
T Consensus       428 ~v~~~~~s~d~~~l~~-~~~d~~v~~w~~~~~~~~~~~~~------~~~v~~~~~spd~~----~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIAS-ASDDKTVKLWNRNGQLLQTLTGH------SSSVRGVAFSPDGQ----TIASASDDKTVKLWNR  496 (577)
T ss_dssp             CEEEEEECTTSSEEEE-EETTSEEEEEETTSCEEEEEECC------SSCEEEEEECTTSC----EEEEEETTSEEEEEET
T ss_pred             CeEEEEECCCCCEEEE-EcCCCEEEEEECCCCEEEEEcCC------CCCEEEEEEcCCCC----EEEEEeCCCEEEEEcC
Confidence            2223345666554432 2233221111   1111222211      11223344555444    3456788999999995


Q ss_pred             CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907          357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD  436 (787)
Q Consensus       357 ~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s  436 (787)
                       +++.+..+.+|..+|++|+|+|||++|||++.|| .|+|||..        |          ..+..+. | |...|++
T Consensus       497 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~lwd~~--------~----------~~~~~~~-~-h~~~v~~  554 (577)
T 2ymu_A          497 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-G-HSSSVWG  554 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEEECTT--------S----------CEEEEEE-C-CSSCEEE
T ss_pred             -CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEEEeCC--------C----------CEEEEEc-C-CCCCEEE
Confidence             6788999999999999999999999999999966 59999962        3          3566664 4 3467999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEe
Q 003907          437 ICFSHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       437 laFSpDg~~LAs~S~dgTVhIwd  459 (787)
                      |+|+|||++|++++.|++|+|||
T Consensus       555 ~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          555 VAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.2e-22  Score=217.76  Aligned_cols=258  Identities=18%  Similarity=0.132  Sum_probs=178.6

Q ss_pred             eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (787)
Q Consensus        98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl  177 (787)
                      .+.+..|+++|.+|++.|+..         ....+|+..+.                                 +++|+|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs~---------------------------------D~~v~v   62 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGSL---------------------------------DDLVKV   62 (321)
T ss_dssp             EEETTSSSSCEEEEEEC----------------CEEEEEET---------------------------------TSCEEE
T ss_pred             eeecccCCCcEEEEEEecCCC---------CCCCEEEEEcC---------------------------------CCCEEE
Confidence            344567899999999987531         11225554221                                 368999


Q ss_pred             EECCCCeEEE--EEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 003907          178 YSFQSHCYEH--VLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA  251 (787)
Q Consensus       178 Wdlktg~~v~--tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lA  251 (787)
                      ||+.+++...  +++.+ ..|.++++++  .+++++. ++.|++||+.+++.+.++..++..             ...++
T Consensus        63 W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~~  129 (321)
T 3ow8_A           63 WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTLA  129 (321)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCEE
T ss_pred             EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEEE
Confidence            9998876543  45544 5899999988  5666654 678999999999998888765542             24588


Q ss_pred             Ecc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907          252 VGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (787)
Q Consensus       252 lsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~  329 (787)
                      ++|  ++||+++.+..+     ..|+..+.            ...                ..+..      .......+
T Consensus       130 ~spdg~~l~~g~~dg~v-----~i~~~~~~------------~~~----------------~~~~~------~~~~v~~~  170 (321)
T 3ow8_A          130 FSPDSQYLATGTHVGKV-----NIFGVESG------------KKE----------------YSLDT------RGKFILSI  170 (321)
T ss_dssp             ECTTSSEEEEECTTSEE-----EEEETTTC------------SEE----------------EEEEC------SSSCEEEE
T ss_pred             ECCCCCEEEEEcCCCcE-----EEEEcCCC------------cee----------------EEecC------CCceEEEE
Confidence            888  789888765211     11221111            000                00000      00011122


Q ss_pred             ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC
Q 003907          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG  409 (787)
Q Consensus       330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g  409 (787)
                      .++++.+    .++.+..||.|+|||+.+++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+..       +
T Consensus       171 ~~spdg~----~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~-------~  238 (321)
T 3ow8_A          171 AYSPDGK----YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH-------A  238 (321)
T ss_dssp             EECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT-------C
T ss_pred             EECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC-------c
Confidence            3333333    3456788999999999999999999999999999999999999999999776 99999854       2


Q ss_pred             CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       410 ~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                                ..+..+. | +...|.+++|+||+++|++++.|++|+|||+........+..|.
T Consensus       239 ----------~~~~~~~-~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          239 ----------NLAGTLS-G-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             ----------CEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ----------ceeEEEc-C-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence                      3455553 4 34579999999999999999999999999998765555555664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=3.1e-22  Score=219.68  Aligned_cols=262  Identities=15%  Similarity=0.126  Sum_probs=180.2

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeecc------------------CcEEEEEEec
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQP  115 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~d------------------g~V~~v~~lP  115 (787)
                      +|++.|..+.|..       +++.|++|.++.++||++.. ++....+..+.                  ..|.++++.|
T Consensus        62 ~h~~~V~~v~fsp-------dg~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           62 DHTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             ECSSCCCEEEECT-------TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCEEEEEEECC-------CCCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            4778888888863       47799999988899999965 55544444332                  2488888876


Q ss_pred             CCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-Cc
Q 003907          116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SS  194 (787)
Q Consensus       116 ~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~  194 (787)
                      +.             .+||+.+.                                 +++|++||+.+++.+..++.+ ..
T Consensus       134 dg-------------~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~  167 (393)
T 1erj_A          134 DG-------------KFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQD  167 (393)
T ss_dssp             TS-------------SEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CC-------------CEEEEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCC
Confidence            42             26654221                                 258999999999999999855 58


Q ss_pred             EEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcce
Q 003907          195 VCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (787)
Q Consensus       195 V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~  271 (787)
                      |.++++++  +.|+++. ++.|++||+.+++...++..+..              ...++++|       .+        
T Consensus       168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~~~~~~~-------~~--------  218 (393)
T 1erj_A          168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VTTVAVSP-------GD--------  218 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EEEEEECS-------TT--------
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cEEEEEEC-------CC--------
Confidence            99999987  5666654 66899999999987666542111              11223221       00        


Q ss_pred             eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (787)
Q Consensus       272 ~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V  351 (787)
                                         +.+                                                ++.+..||.|
T Consensus       219 -------------------~~~------------------------------------------------l~~~s~d~~v  231 (393)
T 1erj_A          219 -------------------GKY------------------------------------------------IAAGSLDRAV  231 (393)
T ss_dssp             -------------------CCE------------------------------------------------EEEEETTSCE
T ss_pred             -------------------CCE------------------------------------------------EEEEcCCCcE
Confidence                               110                                                1234568999


Q ss_pred             EEEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          352 VVKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       352 ~IwDl~s~~~v~~~-------~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      +|||+.+++.+..+       .+|..+|.+++|+|+|++||+++.|| .|+|||+........     ........+...
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~-----~~~~~~~~~~~~  305 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSD-----SKTPNSGTCEVT  305 (393)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEE
T ss_pred             EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCccc-----ccCCCCCcceEE
Confidence            99999999888777       68999999999999999999999966 599999854210000     000000123334


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      +. | +...|.+++|+||+++|++++.|++|+|||+........+.+|.
T Consensus       306 ~~-~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          306 YI-G-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             EE-C-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             Ee-c-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence            43 3 34569999999999999999999999999998654444555563

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.91  E-value=7.5e-22  Score=207.65  Aligned_cols=253  Identities=13%  Similarity=0.159  Sum_probs=187.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. +++...+..|.++|..+++.|+.             
T Consensus        19 ~~gh~~~v~~~~~s~-------~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------   77 (312)
T 4ery_A           19 LAGHTKAVSSVKFSP-------NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS-------------   77 (312)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred             EcccCCcEEEEEECC-------CCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCC-------------
Confidence            467899999999974       356788888776 99999954 66778888999999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV  207 (787)
                      .+|+..+.                                 +++|++||+++++.+.+++.+ ..|..+.+++  ++|++
T Consensus        78 ~~l~s~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  124 (312)
T 4ery_A           78 NLLVSASD---------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS  124 (312)
T ss_dssp             SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            26654321                                 258999999999999999865 5899999988  57776


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. ++.|++||+.+++.+.++..|..+             ...++++|       +.                       
T Consensus       125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-----------------------  161 (312)
T 4ery_A          125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VSAVHFNR-------DG-----------------------  161 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS-----------------------
T ss_pred             EeCCCcEEEEECCCCEEEEEecCCCCc-------------EEEEEEcC-------CC-----------------------
Confidence            55 568999999999888777655432             12233322       10                       


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                          .                                                 .++.+..||.|++||+.+++.+..+.
T Consensus       162 ----~-------------------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~  188 (312)
T 4ery_A          162 ----S-------------------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLI  188 (312)
T ss_dssp             ----S-------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ----C-------------------------------------------------EEEEEeCCCcEEEEECCCCceeeEEe
Confidence                0                                                 01133568899999999998887764


Q ss_pred             -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 003907          367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS  443 (787)
Q Consensus       367 -aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg  443 (787)
                       .|..+|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+. ++...  .+....+.+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          189 DDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSK-------G----------KCLKTYT-GHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             CSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTT-------T----------EEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCC-------C----------cEEEEEE-ecCCceEEEEEEEEeCCC
Confidence             5678899999999999999999966 599999854       2          3454543 32221  23333344789


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ++|++++.||+|+|||+........+..|.
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            999999999999999998765555666664

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=7.8e-22  Score=208.74  Aligned_cols=316  Identities=10%  Similarity=-0.007  Sum_probs=200.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeee-----ccCcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~-----~dg~V~~v~~lP~P~~~~~~d~F  126 (787)
                      .++|.+.|..+.|...  .......+++.+..+.++|||+.... ....+..     +++.|.++.+.|+..        
T Consensus        14 ~~~h~~~v~~i~~~p~--~~~~~~~~~~~~~~~~v~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~--------   82 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWH--SKEGDPLVFATVGSNRVTLYECHSQG-EIRLLQSYVDADADENFYTCAWTYDSN--------   82 (366)
T ss_dssp             ECTTCSCEEEEEECTT--CCTTSCEEEEEEETTEEEEEEECGGG-CEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred             ecCCCCceEEEEEecc--cCCCCceEEEECCCCEEEEEEcCCCc-EEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence            3578999999999841  00123457777777779999997544 4444443     447899999998632        


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC---
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---  202 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~---  202 (787)
                       ....+|++.+.                                 +++|++||+.+++.+.++. +...|.++++++   
T Consensus        83 -~~~~~l~~~~~---------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  128 (366)
T 3k26_A           83 -TSHPLLAVAGS---------------------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP  128 (366)
T ss_dssp             -TCCEEEEEEET---------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT
T ss_pred             -CCCCEEEEecC---------------------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC
Confidence             11236655321                                 2589999999999999998 556999999976   


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceecccc
Q 003907          203 RIVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN  276 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~---t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~  276 (787)
                      ++|+++. ++.|++||+.+++.+..+.   .+..+             ...++++|  ++|+.++.+..+     ..|+.
T Consensus       129 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~dg~i-----~i~d~  190 (366)
T 3k26_A          129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE-------------VLSADYDLLGEKIMSCGMDHSL-----KLWRI  190 (366)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEES
T ss_pred             CEEEEEeCCCeEEEEEeecCeEEEEecccccccCc-------------eeEEEECCCCCEEEEecCCCCE-----EEEEC
Confidence            5777765 5689999999998877773   33321             35678887  688887654211     11222


Q ss_pred             CCCCCc-----CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907          277 LTPSGV-----SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (787)
Q Consensus       277 lt~~~~-----s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V  351 (787)
                      .+....     ...++|.+..+...           ........+.......+....+.++      +..++.+..+|.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~d~~i  253 (366)
T 3k26_A          191 NSKRMMNAIKESYDYNPNKTNRPFI-----------SQKIHFPDFSTRDIHRNYVDCVRWL------GDLILSKSCENAI  253 (366)
T ss_dssp             CSHHHHHHHHHHHTCCGGGCSSCCC-----------CEEECCCSEEECSSCSSCCCEEEEE------TTEEEEECSSSEE
T ss_pred             CCCccccccceeEEecCCCCccccc-----------ceeeccCccccccCCcceEEEEEEc------CCEEEEEecCCEE
Confidence            110000     00000000000000           0000000000000001111112221      1234567889999


Q ss_pred             EEEECCCCc--------------EEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          352 VVKDFVTRA--------------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       352 ~IwDl~s~~--------------~v~~~~aH~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      ++||+.+++              .+..+..|..+|.+++|+|+  |++||+++.||. |+|||+...       .     
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~-------~-----  320 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVE-------D-----  320 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSS-------S-----
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCC-------C-----
Confidence            999998764              48889999999999999999  999999999776 999999541       0     


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                       .....+..+....+...|.+++|+||+++|++++.||+|+|||+.
T Consensus       321 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          321 -PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             001234455432224679999999999999999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.91  E-value=9.7e-22  Score=211.92  Aligned_cols=260  Identities=16%  Similarity=0.153  Sum_probs=176.4

Q ss_pred             CCCCCC-cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-e-EeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-N-ELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~-~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~-ells~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      ..+|++ .|..+.|..       ++++|++|..+| ++|||++..... . .+...|.++|..+++.|+.          
T Consensus        11 ~~~h~~~~v~~l~~sp-------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------   73 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNP-------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----------   73 (345)
T ss_dssp             ECCSTTSCEEEEEECT-------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS----------
T ss_pred             ecCCCCCcEEEEEECC-------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC----------
Confidence            346776 788888863       467888888776 999999653211 2 2335788999999999752          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CcEEEEEecC--
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP--  202 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f~-s~V~sV~~s~--  202 (787)
                         .+||..+.                                 +++|++||+.+++  ++.+++.+ ..|.+|++++  
T Consensus        74 ---~~l~s~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  117 (345)
T 3fm0_A           74 ---NYLASASF---------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG  117 (345)
T ss_dssp             ---SEEEEEET---------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred             ---CEEEEEEC---------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence               26665332                                 2589999998774  56777654 5899999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907          203 RIVAVGL-ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T~e~l~---tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                      ++|+++. ++.|++||+.+.+...   .+..|..+             ...++++|       +.               
T Consensus       118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~~p-------~~---------------  162 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VKHVVWHP-------SQ---------------  162 (345)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EEEEEECS-------SS---------------
T ss_pred             CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eEEEEECC-------CC---------------
Confidence            6777765 5689999998765332   22222221             11223222       10               


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                                  .                                                 .++++..||+|+|||+.+
T Consensus       163 ------------~-------------------------------------------------~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          163 ------------E-------------------------------------------------LLASASYDDTVKLYREEE  181 (345)
T ss_dssp             ------------S-------------------------------------------------CEEEEETTSCEEEEEEET
T ss_pred             ------------C-------------------------------------------------EEEEEeCCCcEEEEEecC
Confidence                        0                                                 112345688999999988


Q ss_pred             Cc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907          359 RA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD  436 (787)
Q Consensus       359 ~~--~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s  436 (787)
                      ++  ....+.+|..+|.+|+|+|+|++|||++.|++ |+|||+....  ...+...........++..+. |.+...|++
T Consensus       182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~  257 (345)
T 3fm0_A          182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPG--NEQGVACSGSDPSWKCICTLS-GFHSRTIYD  257 (345)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTT--CTTCCCCC---CEEEEEEEEC-SSCSSCEEE
T ss_pred             CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCC--CCccceeeccCCccceeEEec-CCCCCcEEE
Confidence            75  45788999999999999999999999999776 9999963210  000000000011123344443 445567999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          437 ICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       437 laFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ++|+|++..|++++.|++|+||++.+..
T Consensus       258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          258 IAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            9999999999999999999999987643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=1.1e-21  Score=215.11  Aligned_cols=241  Identities=12%  Similarity=0.137  Sum_probs=173.8

Q ss_pred             EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEE
Q 003907           59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA  137 (787)
Q Consensus        59 v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~  137 (787)
                      |..+.|..       +++.|++|..+| ++|||++. +++...+..|.++|..+.+.|+.             .+|+..+
T Consensus       126 v~~v~~s~-------dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~-------------~~l~s~s  184 (393)
T 1erj_A          126 IRSVCFSP-------DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG-------------DKLVSGS  184 (393)
T ss_dssp             EEEEEECT-------TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS-------------SEEEEEE
T ss_pred             EEEEEECC-------CCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCC-------------CEEEEec
Confidence            66677752       467888888876 99999964 66777888999999999998742             2565432


Q ss_pred             cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-CCeE
Q 003907          138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQI  213 (787)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~-~~~I  213 (787)
                      .                                 +++|++||+++++++.++.....|..+++++   ++|+++. ++.|
T Consensus       185 ~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          185 G---------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             T---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             C---------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            1                                 2689999999999999999999999999976   5777765 5679


Q ss_pred             EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCce
Q 003907          214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL  293 (787)
Q Consensus       214 ~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~l  293 (787)
                      ++||+.+++.+..+....... ..+.     .....++++|       +                               
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~-~~h~-----~~v~~v~~~~-------~-------------------------------  267 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENESG-TGHK-----DSVYSVVFTR-------D-------------------------------  267 (393)
T ss_dssp             EEEETTTCCEEEEEC-------CCCS-----SCEEEEEECT-------T-------------------------------
T ss_pred             EEEECCCCcEEEeecccccCC-CCCC-----CCEEEEEECC-------C-------------------------------
Confidence            999999998776663211100 0000     0011122211       0                               


Q ss_pred             eEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC------------cE
Q 003907          294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------AI  361 (787)
Q Consensus       294 va~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------------~~  361 (787)
                                                               ++    .++++..||.|+|||+.+.            .+
T Consensus       268 -----------------------------------------g~----~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          268 -----------------------------------------GQ----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             -----------------------------------------SS----EEEEEETTSEEEEEEC---------------CE
T ss_pred             -----------------------------------------CC----EEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence                                                     00    1224456889999998753            35


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      ...+.+|...|.+++|+|+|.+|++++.|| .|+|||+..       +          ..+..+. | +...|.+++|++
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~iwd~~~-------~----------~~~~~l~-~-h~~~v~~v~~~~  362 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKS-------G----------NPLLMLQ-G-HRNSVISVAVAN  362 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-C-CSSCEEEEEECS
T ss_pred             eEEEecccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------eEEEEEC-C-CCCCEEEEEecC
Confidence            667889999999999999999999999966 499999854       3          3555664 4 345799999986


Q ss_pred             ------CCCEEEEEeCCCeEEEEeCCC
Q 003907          442 ------YSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       442 ------Dg~~LAs~S~dgTVhIwdl~~  462 (787)
                            |+++||+++.||+|+||++..
T Consensus       363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          363 GSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  789999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.91  E-value=1.8e-21  Score=211.11  Aligned_cols=235  Identities=14%  Similarity=0.089  Sum_probs=174.0

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-----ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-----~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ...|..+.|..       ++..|++|..++ ++||++....     .....+..|.+.|..+.+.|+.            
T Consensus       106 ~~~v~~~~~sp-------~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------  166 (354)
T 2pbi_B          106 CTWVMACAYAP-------SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD------------  166 (354)
T ss_dssp             SSCCCEEEECT-------TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS------------
T ss_pred             CCCEEEEEECC-------CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC------------
Confidence            33455555542       467888888876 8999985321     2345567889999999998642            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~----~~  204 (787)
                       ..|+..+.                                 +++|++||+++++.+.++..+ ..|..+++++    ++
T Consensus       167 -~~l~t~s~---------------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          167 -MQILTASG---------------------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             -SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             -CEEEEEeC---------------------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence             25554332                                 268999999999999999865 5898888865    47


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      |+++. ++.|++||+.+++.+.++..|..+             ...++++|       +.                    
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~--------------------  252 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESD-------------VNSVRYYP-------SG--------------------  252 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------eEEEEEeC-------CC--------------------
Confidence            77755 668999999999988887766542             23344432       10                    


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                             .                                                 .+++++.||+|+|||+.+++.+.
T Consensus       253 -------~-------------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~  276 (354)
T 2pbi_B          253 -------D-------------------------------------------------AFASGSDDATCRLYDLRADREVA  276 (354)
T ss_dssp             -------S-------------------------------------------------EEEEEETTSCEEEEETTTTEEEE
T ss_pred             -------C-------------------------------------------------EEEEEeCCCeEEEEECCCCcEEE
Confidence                   0                                                 01234568999999999988877


Q ss_pred             EeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          364 QFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       364 ~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      .+..|  ...+.+++|+|+|++|++++.|++ |+|||+..       +          ..+..+. | +...|.+++|||
T Consensus       277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l~-~-h~~~v~~l~~sp  336 (354)
T 2pbi_B          277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLK-------G----------SRVSILF-G-HENRVSTLRVSP  336 (354)
T ss_dssp             EECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-C-CSSCEEEEEECT
T ss_pred             EEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCC-------C----------ceEEEEE-C-CCCcEEEEEECC
Confidence            77644  458999999999999999999776 99999854       3          3555554 4 345799999999


Q ss_pred             CCCEEEEEeCCCeEEEEe
Q 003907          442 YSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwd  459 (787)
                      ||++||+++.|++|+||+
T Consensus       337 dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEcCCCCEEecC
Confidence            999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=7.9e-22  Score=229.49  Aligned_cols=260  Identities=15%  Similarity=0.135  Sum_probs=183.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~-~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+... ..+...+..|.++|..|++.|+.            
T Consensus        55 ~~~h~~~v~~~~~sp-------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------  115 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------  115 (611)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred             ecCCCCceEEEEECC-------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC------------
Confidence            457889999999963       478999999887 999999542 23344677889999999999752            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC---eE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IV  205 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~---~L  205 (787)
                       .+||+++.+..                             ...+|++||  +++.+.++..+ ..|.+|+|+|.   +|
T Consensus       116 -~~l~~~~~~~~-----------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l  163 (611)
T 1nr0_A          116 -KRIAAVGEGRE-----------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI  163 (611)
T ss_dssp             -CEEEEEECCSS-----------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             -CEEEEEECCCC-----------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence             25665432210                             014788888  46666777655 58999999983   47


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      +++. ++.|++||..+++++.++..|..+             ...++++|  ++|                         
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v~fspdg~~l-------------------------  205 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLF-------------------------  205 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEE-------------------------
T ss_pred             EEEeCCCeEEEEECCCCeEeeeeccccCc-------------eEEEEECCCCCEE-------------------------
Confidence            7655 567999999999888888776552             23444433  122                         


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                                                                                  ++++.||+|+|||+.+++.+
T Consensus       206 ------------------------------------------------------------as~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          206 ------------------------------------------------------------ASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             ------------------------------------------------------------EEEETTSCEEEEETTTCCEE
T ss_pred             ------------------------------------------------------------EEEECCCcEEEEECCCCcEe
Confidence                                                                        23456899999999999998


Q ss_pred             EEec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-C-CCCC------cc--------------
Q 003907          363 SQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-G-SGNH------KY--------------  413 (787)
Q Consensus       363 ~~~~-------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~-~g~~------~~--------------  413 (787)
                      ..+.       +|..+|.+++|+|+|++|||++.|+ .|+|||+....... . .+..      ..              
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            8884       7999999999999999999999966 59999986421000 0 0000      00              


Q ss_pred             ---ccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          414 ---DWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       414 ---~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                         .|+. ....+.. ..| +...|.+++|||||++|++++.|++|++||+...
T Consensus       305 ~i~~~~~~~~~~~~~-~~g-h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          305 FINFVNPELGSIDQV-RYG-HNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             CEEEEETTTTEEEEE-ECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cEEEEeCCCCCcceE-EcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence               0000 0011112 234 3457999999999999999999999999999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.90  E-value=1.9e-21  Score=208.91  Aligned_cols=260  Identities=20%  Similarity=0.186  Sum_probs=174.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~------~~~~ells~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      ..+|++.|..+.|.-... ...++++|++|..+| ++|||+...      +.....+..|.++|..+.+.|+.       
T Consensus        17 l~gH~~~V~~~~~~~s~~-~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-------   88 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQK-ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-------   88 (343)
T ss_dssp             EECCSSCEEEEEECCCSS-TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-------
T ss_pred             eccchhhhhheeeEEEee-cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-------
Confidence            567999999998842110 012467888888876 999999642      23445678899999999998642       


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-  202 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-  202 (787)
                            .+|+..+.                                 +++|+|||+++++.+.++..+ ..|.+|++++ 
T Consensus        89 ------~~l~s~s~---------------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~  129 (343)
T 2xzm_R           89 ------CFAISSSW---------------------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD  129 (343)
T ss_dssp             ------TEEEEEET---------------------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred             ------CEEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence                  26654221                                 369999999999999999754 6999999987 


Q ss_pred             -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       +.|+++ .++.|++||+.. +....+.....     +.     .....++       +.....       . ..     
T Consensus       130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~-----~~-----~~v~~~~-------~~~~~~-------~-~~-----  178 (343)
T 2xzm_R          130 NRQILSAGAEREIKLWNILG-ECKFSSAEKEN-----HS-----DWVSCVR-------YSPIMK-------S-AN-----  178 (343)
T ss_dssp             TTEEEEEETTSCEEEEESSS-CEEEECCTTTS-----CS-----SCEEEEE-------ECCCCC-------S-CS-----
T ss_pred             CCEEEEEcCCCEEEEEeccC-CceeeeecccC-----CC-----ceeeeee-------eccccc-------c-cc-----
Confidence             566665 467899999873 33222221000     00     0011222       222110       0 00     


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                                                     .       ..|               ....++.+..||.|+||| .+.+
T Consensus       179 -------------------------------~-------~~~---------------~~~~l~s~~~d~~i~iwd-~~~~  204 (343)
T 2xzm_R          179 -------------------------------K-------VQP---------------FAPYFASVGWDGRLKVWN-TNFQ  204 (343)
T ss_dssp             -------------------------------C-------CCS---------------SCCEEEEEETTSEEEEEE-TTTE
T ss_pred             -------------------------------c-------cCC---------------CCCEEEEEcCCCEEEEEc-CCCc
Confidence                                           0       000               001134567899999999 4567


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (787)
                      ....+.+|..+|.+++|+|+|++|||++.||+ |+|||+...      +          .....+..+   ..|.+++|+
T Consensus       205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~------~----------~~~~~~~~~---~~v~~v~~s  264 (343)
T 2xzm_R          205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL------T----------YPQREFDAG---STINQIAFN  264 (343)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC------S----------SCSEEEECS---SCEEEEEEC
T ss_pred             eeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC------c----------ccceeecCC---CcEEEEEEC
Confidence            78889999999999999999999999999765 999998431      1          122233222   359999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ||+++|+++ .|++|+||++....
T Consensus       265 p~~~~la~~-~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          265 PKLQWVAVG-TDQGVKIFNLMTQS  287 (343)
T ss_dssp             SSSCEEEEE-ESSCEEEEESSSCC
T ss_pred             CCCCEEEEE-CCCCEEEEEeCCCC
Confidence            999988765 57789999997643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=1.2e-22  Score=216.34  Aligned_cols=266  Identities=15%  Similarity=0.116  Sum_probs=172.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|+.       +++.|++|..+| ++|||+.... .+...+..|.++|..|++.|..         .+ 
T Consensus         9 ~~~H~~~V~~v~~s~-------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~---------~~-   71 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM---------YG-   71 (316)
T ss_dssp             -----CCEEEEEECG-------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG---------GS-
T ss_pred             cccccCeEEEeeEcC-------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC---------CC-
Confidence            467999999999974       366888888876 9999996532 2345677899999999997521         11 


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecCC---
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSPR---  203 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f-~s~V~sV~~s~~---  203 (787)
                       .+|+.++.                                 +++|+|||+++++  .+.++.. ...|.+|++++.   
T Consensus        72 -~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g  117 (316)
T 3bg1_A           72 -NILASCSY---------------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG  117 (316)
T ss_dssp             -SCEEEEET---------------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred             -CEEEEEEC---------------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence             25655332                                 2689999999874  5666654 468999999873   


Q ss_pred             -eEEEEe-CCeEEEEECCCCceeEEE---EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907          204 -IVAVGL-ATQIYCFDALTLENKFSV---LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       204 -~LaV~~-~~~I~iwD~~T~e~l~tl---~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                       +|+++. ++.|++||+.+.......   ..|..             ....++++|...  .                  
T Consensus       118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-------------~v~~~~~~~~~~--~------------------  164 (316)
T 3bg1_A          118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-------------GCNAVSWAPAVV--P------------------  164 (316)
T ss_dssp             SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-------------CBCCCEECCCCC--C------------------
T ss_pred             cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-------------CcceEEEccccC--C------------------
Confidence             677765 567999998875322111   11211             122344433110  0                  


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s  358 (787)
                                  +.++.+                         +.+..     .    .....+++++.||+|+|||+..
T Consensus       165 ------------~~~~~~-------------------------~~~~~-----~----~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          165 ------------GSLIDH-------------------------PSGQK-----P----NYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             -------------------------------------------CCSCC-----C----CCCCBEECCBTTSBCCEEEECT
T ss_pred             ------------cccccc-------------------------ccccC-----c----cccceEEEecCCCeEEEEEeCC
Confidence                        000000                         00000     0    0001244677899999999975


Q ss_pred             C---cEEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907          359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (787)
Q Consensus       359 ~---~~v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~  431 (787)
                      .   +.+..|.+|..+|.+++|+|++    .+|||+|.||+ |+|||+....    .+.         .....+. + +.
T Consensus       199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~~---------~~~~~~~-~-~~  262 (316)
T 3bg1_A          199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SNT---------WSPKLLH-K-FN  262 (316)
T ss_dssp             TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CCC---------CBCCEEE-E-CS
T ss_pred             CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----ccc---------hhhhhhh-c-CC
Confidence            5   4677899999999999999997    89999999665 9999985310    000         0011121 2 23


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ..|++++|+|||++||+++.|++|+||++...
T Consensus       263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            57999999999999999999999999998644

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.90  E-value=6.1e-22  Score=209.43  Aligned_cols=217  Identities=14%  Similarity=0.199  Sum_probs=165.7

Q ss_pred             eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (787)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr  176 (787)
                      +..++..|.+.|..|++.|+             .++||..+.                                 +++|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~---------------------------------dg~v~   38 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLY---------------------------------SGRVE   38 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred             eEEeecCCCCceEEEEECCC-------------CCEEEEEcC---------------------------------CCcEE
Confidence            46788999999999999875             247765321                                 26899


Q ss_pred             EEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 003907          177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV  252 (787)
Q Consensus       177 lWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAl  252 (787)
                      |||+.+++.+.+++.+ .+|.++++++  ++|+++. ++.|++||+.+++.+.++..|+.+             ...+++
T Consensus        39 lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~~~  105 (304)
T 2ynn_A           39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSIAV  105 (304)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE
T ss_pred             EEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEEEE
Confidence            9999999999999865 5899999987  6777765 568999999999999888877653             233444


Q ss_pred             ccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC
Q 003907          253 GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN  332 (787)
Q Consensus       253 spr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s  332 (787)
                      +|       +.                           .                                         
T Consensus       106 ~~-------~~---------------------------~-----------------------------------------  110 (304)
T 2ynn_A          106 HP-------TK---------------------------P-----------------------------------------  110 (304)
T ss_dssp             CS-------SS---------------------------S-----------------------------------------
T ss_pred             cC-------CC---------------------------C-----------------------------------------
Confidence            33       11                           0                                         


Q ss_pred             CccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          333 SVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       333 ~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                              .+++++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+|||++.|+ .|+|||+...        
T Consensus       111 --------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~~--------  173 (304)
T 2ynn_A          111 --------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQS--------  173 (304)
T ss_dssp             --------EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTCS--------
T ss_pred             --------EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCCC--------
Confidence                    0123456899999999887 55677899999999999999 689999999966 5999998531        


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                               .....+..+. ...|..++|+|  |+++|++++.|++|+|||+........+..|..
T Consensus       174 ---------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~  229 (304)
T 2ynn_A          174 ---------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (304)
T ss_dssp             ---------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ---------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence                     1233444332 34588899986  789999999999999999987665666777753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=3.3e-21  Score=212.80  Aligned_cols=273  Identities=15%  Similarity=0.146  Sum_probs=187.5

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .++|++|.++.++|||++ ++++.+++.  .|.+.|.+|++.|+.             .+||+.+.              
T Consensus       116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs~--------------  167 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS--------------  167 (420)
T ss_dssp             TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred             CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCC-------------CEEEEEEC--------------
Confidence            569999998899999995 577877765  456789999999752             26765321              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCCCc-eeEEEEe
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLE-NKFSVLT  229 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e-~l~tl~t  229 (787)
                                         +++|+|||+++++.+.++..+ ..|.++.+++++|+++. +..+++||..+.. .+.++..
T Consensus       168 -------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~  228 (420)
T 4gga_A          168 -------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG  228 (420)
T ss_dssp             -------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             -------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence                               258999999999999999866 58999999999999876 4579999988754 3455555


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~  307 (787)
                      |...             ...+.+.|  ++|+.++.+..+     ..|+..+......       .+              
T Consensus       229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v-----~i~~~~~~~~~~~-------~~--------------  269 (420)
T 4gga_A          229 HSQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWV-------PL--------------  269 (420)
T ss_dssp             CSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCCSSCSC-------CS--------------
T ss_pred             cccc-------------eeeeeecCCCCeeeeeeccccc-----eEEeeccccccce-------ee--------------
Confidence            5442             23456666  788887665211     1222221100000       00              


Q ss_pred             ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003907          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (787)
Q Consensus       308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATa  387 (787)
                         +.+..+      .+......+++.... ....+.+..||+|+|||+.+++.+..+..| ..+.++.|+|+++.|+++
T Consensus       270 ---~~~~~~------~~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          270 ---QTFTQH------QGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG  338 (420)
T ss_dssp             ---EEECCC------SSCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred             ---eeeccc------CCceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence               000000      000111111111111 011224568999999999999999988876 578899999999999987


Q ss_pred             E--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          388 S--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       388 S--~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +  .|| .|+|||+..       +          .++.++. | |...|++|+|||||++||+++.|+||+|||+....
T Consensus       339 sg~~d~-~I~iwd~~~-------~----------~~v~~l~-g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          339 HGFAQN-QLVIWKYPT-------M----------AKVAELK-G-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             ECTTTC-CEEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EecCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            6  445 599999854       3          4777775 5 34679999999999999999999999999997643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-21  Score=208.13  Aligned_cols=263  Identities=11%  Similarity=0.099  Sum_probs=179.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|+.       +++.|++|..+| ++|||++. .......+..|.++|.++.+.|+.           .
T Consensus         7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~   68 (379)
T 3jrp_A            7 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   68 (379)
T ss_dssp             EEECCCCEEEEEECS-------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred             ecCCcccEEEEEEcC-------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence            567899999999974       366888888776 99999963 234555677899999999998531           1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR---  203 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~~---  203 (787)
                      ..+|++++.                                 +++|++||+++++  .+..+. +...|.++++++.   
T Consensus        69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence            236655332                                 2589999999997  666665 4468999999864   


Q ss_pred             -eEEEEe-CCeEEEEECCCCceeE--EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          204 -IVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       204 -~LaV~~-~~~I~iwD~~T~e~l~--tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                       +|+++. ++.|++||+.+.+...  .+..+..+             ...++++|...+.....                
T Consensus       116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~~~~----------------  166 (379)
T 3jrp_A          116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH----------------  166 (379)
T ss_dssp             SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEEEEECCCC-----------------------
T ss_pred             CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEEEEEcCccccccccc----------------
Confidence             566654 6689999998875333  33333331             22344433111100000                


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                           ...                                                 ..+..++.+..||.|+|||+.++
T Consensus       167 -----~~~-------------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          167 -----NGT-------------------------------------------------KESRKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             ---------------------------------------------------------CTTCEEEEEETTSCEEEEEEETT
T ss_pred             -----cCC-------------------------------------------------CCCCEEEEEeCCCeEEEEEecCC
Confidence                 000                                                 00011234567899999999875


Q ss_pred             c----EEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       360 ~----~v~~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                      +    .+..+.+|..+|.+++|+|+   |++||+++.||. |+|||+....     .         ......+....+..
T Consensus       193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~-----~---------~~~~~~~~~~~~~~  257 (379)
T 3jrp_A          193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD  257 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred             CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCC-----c---------cceeeeeccccCCC
Confidence            4    56778899999999999999   999999999776 9999985410     0         01111222222345


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .|.+++|+|||++|++++.||+|+||++...
T Consensus       258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          258 VLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            7999999999999999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-21  Score=211.06  Aligned_cols=293  Identities=12%  Similarity=0.080  Sum_probs=196.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      +++.|..+.|..       +++.|++|..+| ++|||.  .++....+..|.++|..+.+.|+.             .+|
T Consensus       107 ~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l  164 (425)
T 1r5m_A          107 TTNQVTCLAWSH-------DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG-------------THI  164 (425)
T ss_dssp             -CBCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS-------------SEE
T ss_pred             CCCceEEEEEcC-------CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC-------------CEE
Confidence            466899888864       367888888877 999993  466777788899999999998742             256


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc----------------EEE
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS----------------VCM  197 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~----------------V~s  197 (787)
                      ++++.                                 +++|++||+++++.+..+..+..                |.+
T Consensus       165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (425)
T 1r5m_A          165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD  211 (425)
T ss_dssp             EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred             EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence            54331                                 25799999999999999987643                788


Q ss_pred             EEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceec
Q 003907          198 VRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLS  273 (787)
Q Consensus       198 V~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s  273 (787)
                      +.+++ ..++++ .++.|++||+.+++.+..+..+..+             ...++++|  ++|++++.+..+     ..
T Consensus       212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i-----~i  273 (425)
T 1r5m_A          212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTL-----RI  273 (425)
T ss_dssp             CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCE-----EE
T ss_pred             EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEE-----EE
Confidence            88876 455554 4568999999999888887765542             35678887  788887654211     12


Q ss_pred             cccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEE
Q 003907          274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV  353 (787)
Q Consensus       274 ~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~I  353 (787)
                      |+..+....                            +.+..+      ......+.++++.     .++.+..+|.|++
T Consensus       274 ~d~~~~~~~----------------------------~~~~~~------~~~i~~~~~~~~~-----~l~~~~~d~~i~i  314 (425)
T 1r5m_A          274 WHGGNGNSQ----------------------------NCFYGH------SQSIVSASWVGDD-----KVISCSMDGSVRL  314 (425)
T ss_dssp             ECSSSBSCS----------------------------EEECCC------SSCEEEEEEETTT-----EEEEEETTSEEEE
T ss_pred             EECCCCccc----------------------------eEecCC------CccEEEEEECCCC-----EEEEEeCCCcEEE
Confidence            222111000                            011000      0001111222221     2346678999999


Q ss_pred             EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cCCCCCCccccCC-cceEEEEEecccc
Q 003907          354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RSGSGNHKYDWNS-SHVHLYKLHRGIT  430 (787)
Q Consensus       354 wDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~--~~~~g~~~~~~~~-s~~~l~~l~rG~~  430 (787)
                      ||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+|||+.....  ....+.....+.. ....+..+. ++.
T Consensus       315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  392 (425)
T 1r5m_A          315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ  392 (425)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEEC-CTT
T ss_pred             EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc
Confidence            999999999999999999999999999999999999775 99999854110  0000000000000 001445554 333


Q ss_pred             cc-cEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          431 SA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       431 ~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .. .|.+++|+||+++|++++.||+|+||+++
T Consensus       393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            23 79999999999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.5e-21  Score=206.18  Aligned_cols=292  Identities=15%  Similarity=0.129  Sum_probs=194.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcee-EeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~-ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|..    +..+++.|++|..+| ++|||++..+... ..+..|.++|..+.+.|+.            
T Consensus        35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------   98 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG------------   98 (368)
T ss_dssp             SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS------------
T ss_pred             ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC------------
Confidence            567899999999974    211257899998877 8999997644443 6788899999999998742            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEe--cC--CeE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SP--RIV  205 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~--s~--~~L  205 (787)
                       .+|++++.                                 +++|++||+++++.+....+...|.++.+  ++  ++|
T Consensus        99 -~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  144 (368)
T 3mmy_A           99 -SKVFTASC---------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV  144 (368)
T ss_dssp             -SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred             -CEEEEEcC---------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence             26655331                                 25899999999999998888899999999  66  456


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +++. ++.|++||+.+++.+.++..+...              ..+.+.+..++.+..+.     ....|+.....    
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~----  201 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPERC--------------YCADVIYPMAVVATAER-----GLIVYQLENQP----  201 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSCE--------------EEEEEETTEEEEEEGGG-----CEEEEECSSSC----
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCCc--------------eEEEecCCeeEEEeCCC-----cEEEEEecccc----
Confidence            6654 678999999999988888754321              12233333333332211     01112111100    


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC---cE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AI  361 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~---~~  361 (787)
                             .....        +....  .....+.         ....+......  .++.+..+|.|+|||+...   ..
T Consensus       202 -------~~~~~--------~~~~~--~~~~~~~---------~~~~~~~~~~~--~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          202 -------SEFRR--------IESPL--KHQHRCV---------AIFKDKQNKPT--GFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             -------EEEEE--------CCCSC--SSCEEEE---------EEEECTTSCEE--EEEEEETTSEEEEEESSCSCHHHH
T ss_pred             -------chhhh--------ccccc--cCCCceE---------EEcccCCCCCC--eEEEecCCCcEEEEecCCCCcccc
Confidence                   00000        00000  0000000         00000101111  1456788999999999987   56


Q ss_pred             EEEeccCCC------------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          362 ISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       362 v~~~~aH~~------------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      +..+.+|..            +|.+++|+|+|++||+++.||. |+|||+..       +          ..+..+. + 
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~-  313 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE-Q-  313 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-C-
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-C-
Confidence            778888876            7999999999999999999776 99999854       2          4555554 3 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       430 ~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +...|++++|+|||++|++++.|+..+.|++-...
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence            34579999999999999999999977777665433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7e-21  Score=201.20  Aligned_cols=263  Identities=11%  Similarity=0.077  Sum_probs=188.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..|.++|.++++.|+.             
T Consensus        28 l~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------   86 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK-------EGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT-------------   86 (369)
T ss_dssp             EECCSSCEEEEEECT-------TSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred             EEEeeceEEEEEEcC-------CCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCC-------------
Confidence            467899999999974       366888888776 99999964 66777888899999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~  208 (787)
                      .+|++++.                                 +++|++||+++++.+..+.+...|.++.+++  +.|+++
T Consensus        87 ~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           87 KYCVTGSA---------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             SEEEEEET---------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence            26655331                                 2689999999999999999889999999988  677776


Q ss_pred             eC------CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907          209 LA------TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       209 ~~------~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      ..      +.|++||+.+.+....+.......              ...+       ....      +            
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~--------------~~~~-------~~~~------~------------  174 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEP--------------IHKI-------ITHE------G------------  174 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSC--------------SEEE-------ECCT------T------------
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccce--------------eeec-------cCCc------C------------
Confidence            54      589999987765443333211100              0000       0000      0            


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI  361 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~  361 (787)
                              ...+                                ..+.++++.    ..++.+..+|.|++||+.+ .+.
T Consensus       175 --------~~~~--------------------------------~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~  210 (369)
T 3zwl_B          175 --------LDAA--------------------------------TVAGWSTKG----KYIIAGHKDGKISKYDVSNNYEY  210 (369)
T ss_dssp             --------CCCE--------------------------------EEEEECGGG----CEEEEEETTSEEEEEETTTTTEE
T ss_pred             --------ccce--------------------------------eEEEEcCCC----CEEEEEcCCCEEEEEECCCCcEe
Confidence                    0000                                000011111    1123456789999999998 788


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      +..+..|..+|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+.   ....+.+++|+|
T Consensus       211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~~~  269 (369)
T 3zwl_B          211 VDSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDVST-------L----------QVLKKYE---TDCPLNTAVITP  269 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECS
T ss_pred             EEEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEECCC-------C----------ceeeeec---CCCCceeEEecC
Confidence            999999999999999999999999999966 599999854       2          3455554   235699999999


Q ss_pred             CCCEEEEEeCCC--------------eEEEEeCCCCCCccccccc
Q 003907          442 YSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       442 Dg~~LAs~S~dg--------------TVhIwdl~~~gg~~~~~~H  472 (787)
                      ++++|++++.++              ++++||+........+..|
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH  314 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence            999999999998              7888888765444444445

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.90  E-value=5.3e-22  Score=219.53  Aligned_cols=254  Identities=16%  Similarity=0.193  Sum_probs=185.8

Q ss_pred             eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (787)
Q Consensus        98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl  177 (787)
                      ...+..|.++|.++.+.|+             .++|+..+.                                 +++|+|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~-------------~~~l~s~s~---------------------------------Dg~i~v  134 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPV-------------FSVMVSASE---------------------------------DATIKV  134 (410)
T ss_dssp             SCEEECCSSCEEEEEECSS-------------SSEEEEEES---------------------------------SSCEEE
T ss_pred             eEeecccCCcEEEEEEcCC-------------CCEEEEEeC---------------------------------CCeEEE
Confidence            4467789999999999874             236654221                                 258999


Q ss_pred             EECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 003907          178 YSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG  253 (787)
Q Consensus       178 Wdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls  253 (787)
                      ||+.+++.+++++.+ ..|.+|+|++  ++|++|. ++.|++||+.+++++.++..|..+             ...++++
T Consensus       135 wd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-------------V~~v~~~  201 (410)
T 1vyh_C          135 WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------VSSVSIM  201 (410)
T ss_dssp             EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------EEEEEEC
T ss_pred             EECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-------------EEEEEEe
Confidence            999999999999865 5899999987  6777765 568999999999988887766553             3568888


Q ss_pred             c--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCccc
Q 003907          254 P--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP  331 (787)
Q Consensus       254 p--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~  331 (787)
                      |  ++|+.++.+..+     ..|+..++.            .+                +++.++..      ......+
T Consensus       202 p~~~~l~s~s~D~~i-----~~wd~~~~~------------~~----------------~~~~~h~~------~v~~~~~  242 (410)
T 1vyh_C          202 PNGDHIVSASRDKTI-----KMWEVQTGY------------CV----------------KTFTGHRE------WVRMVRP  242 (410)
T ss_dssp             SSSSEEEEEETTSEE-----EEEETTTCC------------EE----------------EEEECCSS------CEEEEEE
T ss_pred             CCCCEEEEEeCCCeE-----EEEECCCCc------------EE----------------EEEeCCCc------cEEEEEE
Confidence            7  788888765321     124332211            00                11111110      0111122


Q ss_pred             CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC--------------------CCEEEEEEcCC
Q 003907          332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------------------GTLLVTASVYG  391 (787)
Q Consensus       332 s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd--------------------G~lLATaS~dG  391 (787)
                      +++.    ..+++++.||+|+|||+.+++....+.+|..+|.+++|+|+                    |.+|+|++.||
T Consensus       243 ~~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          243 NQDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             CTTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             CCCC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            2222    23456788999999999999999999999999999999996                    77999999966


Q ss_pred             CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907          392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (787)
Q Consensus       392 ~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~  471 (787)
                       .|+|||+..       +          ..+..+. | +...|.+++|+|||++|++++.|++|+|||+........+..
T Consensus       319 -~i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~  378 (410)
T 1vyh_C          319 -TIKMWDVST-------G----------MCLMTLV-G-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  378 (410)
T ss_dssp             -EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             -eEEEEECCC-------C----------ceEEEEE-C-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence             599999864       3          4666664 4 345799999999999999999999999999987666666666


Q ss_pred             cc
Q 003907          472 LS  473 (787)
Q Consensus       472 H~  473 (787)
                      |.
T Consensus       379 h~  380 (410)
T 1vyh_C          379 HE  380 (410)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=8e-21  Score=198.63  Aligned_cols=275  Identities=13%  Similarity=0.058  Sum_probs=189.1

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEe--ee--eccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNEL--VS--KRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~el--ls--~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      +|.+.|..+.|..       +++.|++|.++.++|||++.......+  +.  .|.++|.++.+.|+.            
T Consensus        49 ~h~~~v~~~~~~~-------~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------  109 (337)
T 1gxr_A           49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------  109 (337)
T ss_dssp             CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred             cCCCceEEEEEec-------CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence            4677788888863       467888888656999999764432222  22  678899999998742            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CcEEEEEecC--Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP--RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f~-s~V~sV~~s~--~~  204 (787)
                       .+|++.+.                                 .++|++||+++++  ....+..+ ..|.++++++  ++
T Consensus       110 -~~l~~~~~---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (337)
T 1gxr_A          110 -CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV  155 (337)
T ss_dssp             -SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred             -CEEEEEcC---------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence             25654321                                 2589999999987  55555544 5899999987  57


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      |+++. ++.|++||+.+++.+.++..|..+             ...++++|  ++|+.++.+..+     ..|+..+.  
T Consensus       156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i-----~~~d~~~~--  215 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG--  215 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred             EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcE-----EEEECCCC--
Confidence            77765 567999999999888887665442             35678877  688887654211     12222111  


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                ......                .       ..+......++++.+    .++.+..+|.|++||+.+++.
T Consensus       216 ----------~~~~~~----------------~-------~~~~v~~~~~s~~~~----~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          216 ----------RQLQQH----------------D-------FTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             ----------EEEEEE----------------E-------CSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred             ----------ceEeee----------------c-------CCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCCe
Confidence                      110000                0       000011122222222    234567789999999998875


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                       ..+..|..+|.+++|+|+|++|++++.|| .|++||+..       +          ..+....   +...|.+++|+|
T Consensus       259 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~s~  316 (337)
T 1gxr_A          259 -YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV  316 (337)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred             -EEEcCCccceeEEEECCCCCEEEEecCCC-cEEEEECCC-------C----------eEEEEec---CCCcEEEEEECC
Confidence             46789999999999999999999999966 599999854       2          2333332   345799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q 003907          442 YSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl  460 (787)
                      |+++|++++.||+|+||++
T Consensus       317 ~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEE
Confidence            9999999999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=4.5e-21  Score=199.49  Aligned_cols=280  Identities=12%  Similarity=0.126  Sum_probs=179.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---ceeEeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      ..+|++.|..+.|+.       +++.|++|..+| ++|||++...   .....+..|.++|.++++.|..          
T Consensus         7 ~~gH~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------   69 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDF-------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE----------   69 (351)
T ss_dssp             ECCCSSCEEEEEECS-------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred             CcccccceeEEEEcC-------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence            467999999999974       356888888877 9999997543   2445567788999999998620          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---------eEEEEEeC-CCcEEE
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLRF-RSSVCM  197 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg---------~~v~tL~f-~s~V~s  197 (787)
                       ...+|++.+.                                 +++|++||++++         +.+..+.. ...|.+
T Consensus        70 -d~~~l~s~~~---------------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  115 (351)
T 3f3f_A           70 -YGRIIASASY---------------------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS  115 (351)
T ss_dssp             -GCSEEEEEET---------------------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred             -CCCEEEEEcC---------------------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence             1226655331                                 258999999987         66777764 468999


Q ss_pred             EEecCC----eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907          198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       198 V~~s~~----~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~  272 (787)
                      +++++.    +|+++. ++.|++||+.+++.+..+......              ..+.+       ....       . 
T Consensus       116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~-------~-  166 (351)
T 3f3f_A          116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLSI-------PPAN-------H-  166 (351)
T ss_dssp             EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCSC-------CCSS-------C-
T ss_pred             EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------ccccc-------ccCC-------c-
Confidence            999864    666654 568999999988754433210000              00000       0000       0 


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                      .....                       +-.+.|+.            .....++.+..++.+.
T Consensus       167 ----------------~~~~~-----------------------~~~~~p~~------------~~~~~l~~~~~~~~~~  195 (351)
T 3f3f_A          167 ----------------LQSDF-----------------------CLSWCPSR------------FSPEKLAVSALEQAII  195 (351)
T ss_dssp             ----------------SCCCE-----------------------EEEECCCS------------SSCCEEEEEETTEEEE
T ss_pred             ----------------cccee-----------------------EEEeccCC------------CCCcEEEEecCCCcEE
Confidence                            00000                       00000000            0001123456788888


Q ss_pred             EEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccC--------------------
Q 003907          353 VKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRS--------------------  406 (787)
Q Consensus       353 IwDl~s~~~--v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~--------------------  406 (787)
                      +|+...++.  +..+.+|..+|.+++|+|+|    ++|+|++.||. |+|||+.......                    
T Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
T 3f3f_A          196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDM  274 (351)
T ss_dssp             EEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------
T ss_pred             EEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccc
Confidence            888877764  77888999999999999998    89999999776 9999985421000                    


Q ss_pred             -CCCC----C---ccccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          407 -GSGN----H---KYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       407 -~~g~----~---~~~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                       ..+.    .   ...+.. ....+..+. + +...|++++|+||+++|++++.||+|+||++...+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          275 DAQGRSDSNTEEKAELQSNLQVELLSEHD-D-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             ----------------CCSEEEEEEEEEC-T-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ccccccccccceeeeecccccccEEEEEe-c-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence             0000    0   000000 112333343 3 345799999999999999999999999999987543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.89  E-value=3.6e-21  Score=218.79  Aligned_cols=317  Identities=18%  Similarity=0.176  Sum_probs=208.4

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      ..|...|..+.|..       +++.|++|..+| ++|||.  .++....+..|.++|..+.+.|+.             .
T Consensus       218 ~~~~~~v~~~~~s~-------dg~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~v~~v~~~~d~-------------~  275 (577)
T 2ymu_A          218 TGHSSSVRGVAFSP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDG-------------Q  275 (577)
T ss_dssp             ECCSSCEEEEEECT-------TSSCEEEEETTSCEEEECT--TSCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred             ecCCCCEEEEEECC-------CCCEEEEEeCCCEEEEEeC--CCCEEEEEecCCCCEEEEEEcCCC-------------C
Confidence            34566677777753       356777777776 999996  356777888899999999998742             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~  208 (787)
                      +|++.+.                                 +++|++||. +++.+..+..+ ..|+++++++  +.|+++
T Consensus       276 ~l~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~  321 (577)
T 2ymu_A          276 TIASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASA  321 (577)
T ss_dssp             EEEEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEE
Confidence            5654321                                 257999996 56777888654 6899999987  577776


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecC-cceeccccCC---C
Q 003907          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSN-SGRLSPQNLT---P  279 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~-~g~~s~q~lt---~  279 (787)
                      . ++.|++||+.+. .+..+..+..+             ...++++|  ++||.++.+.  .+++ .+.. ...+.   .
T Consensus       322 ~~d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~-~~~~~~~~~  386 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSS  386 (577)
T ss_dssp             ETTSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCE-EEEEECCSS
T ss_pred             eCCCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCE-EEEecCCCC
Confidence            5 567999997644 45556554442             34678888  7888886653  2222 1111 11111   1


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhc---ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAA---GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~---G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl  356 (787)
                      ......++|++..++. ...|....+..   ...+++..+      .+....+.++++.+    .++.+..||.|++||+
T Consensus       387 ~v~~~~~s~dg~~l~~-~~~d~~v~~~~~~~~~~~~~~~~------~~~v~~~~~s~d~~----~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIAS-ASDDKTVKLWNRNGQLLQTLTGH------SSSVWGVAFSPDDQ----TIASASDDKTVKLWNR  455 (577)
T ss_dssp             CEEEEEECTTSSCEEE-EETTSEEEEECTTCCEEEEEECC------SSCEEEEEECTTSS----EEEEEETTSEEEEEET
T ss_pred             CeEEEEECCCCCEEEE-EeCCCEEEEEeCCCCEEEEecCC------CCCeEEEEECCCCC----EEEEEcCCCEEEEEEC
Confidence            2223345566544432 23332211110   111222211      11122344444443    3456788999999996


Q ss_pred             CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907          357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD  436 (787)
Q Consensus       357 ~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s  436 (787)
                       +++.+..+.+|..+|.+++|+|+|++||+++.|+ .|+|||..        |          ..+..+. | +...|.+
T Consensus       456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--------~----------~~~~~~~-~-h~~~v~~  513 (577)
T 2ymu_A          456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-G-HSSSVRG  513 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--------S----------CEEEEEE-C-CSSCEEE
T ss_pred             -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--------C----------CEEEEEe-C-CCCCEEE
Confidence             5678889999999999999999999999999966 59999962        3          3555664 4 3457999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       437 laFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                      |+|||||++||+++.|++|+|||+. ......+.+|..
T Consensus       514 l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~  550 (577)
T 2ymu_A          514 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS  550 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred             EEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCC
Confidence            9999999999999999999999963 223345666753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=2.9e-21  Score=208.34  Aligned_cols=289  Identities=11%  Similarity=0.036  Sum_probs=198.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-----ceeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRDGPVSFLQMQPFPVKDDGCEG  125 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-----~~~ells~~dg~V~~v~~lP~P~~~~~~d~  125 (787)
                      ..+|++.|..+.|+.         +.|++|..+| ++|||++...     .+...+..|.++|.++.+.|+..       
T Consensus        12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------   75 (397)
T 1sq9_A           12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE-------   75 (397)
T ss_dssp             SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE-------
T ss_pred             hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc-------
Confidence            567999999999962         4777777776 9999996533     14566678889999999997410       


Q ss_pred             ccccC---cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC-----
Q 003907          126 FRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR-----  192 (787)
Q Consensus       126 F~~sr---pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----v~tL~f~-----  192 (787)
                        ...   .+|++.+.                                 +++|++||+.+++.     +..+..+     
T Consensus        76 --~~g~~~~~l~s~~~---------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  120 (397)
T 1sq9_A           76 --RDAFELCLVATTSF---------------------------------SGDLLFYRITREDETKKVIFEKLDLLDSDMK  120 (397)
T ss_dssp             --TTTEEEEEEEEEET---------------------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTGG
T ss_pred             --cCCccccEEEEEcC---------------------------------CCCEEEEEccCCcccccccceeecccccccC
Confidence              001   25654321                                 25899999999887     8888765     


Q ss_pred             -CcEEEEEec----C--Ce-EEEEe-CCeEEEEECCC------CceeE-----EEEe-------cCCcccCCCCcccccc
Q 003907          193 -SSVCMVRCS----P--RI-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGINV  245 (787)
Q Consensus       193 -s~V~sV~~s----~--~~-LaV~~-~~~I~iwD~~T------~e~l~-----tl~t-------~p~p~~~~~~~~~~~~  245 (787)
                       ..|.+++++    +  +. |+++. ++.|++||+.+      ++.+.     ++..       +..             
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  187 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ-------------  187 (397)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC-------------
T ss_pred             CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC-------------
Confidence             799999999    5  56 77664 56899999998      66665     6643       221             


Q ss_pred             ccceeEEccc-eEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecc---cccccC
Q 003907          246 GYGPMAVGPR-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK---YCQELL  321 (787)
Q Consensus       246 ~~~~lAlspr-~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~---~~~~l~  321 (787)
                      ....++++|. +|++++.+..+     ..|+..+.            ..+                ..+..   +.   .
T Consensus       188 ~i~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~------------~~~----------------~~~~~~~~h~---~  231 (397)
T 1sq9_A          188 FATSVDISERGLIATGFNNGTV-----QISELSTL------------RPL----------------YNFESQHSMI---N  231 (397)
T ss_dssp             CCCEEEECTTSEEEEECTTSEE-----EEEETTTT------------EEE----------------EEEECCC------C
T ss_pred             CceEEEECCCceEEEEeCCCcE-----EEEECCCC------------cee----------------EEEecccccc---c
Confidence            1346788773 66776654211     12222111            110                01110   00   0


Q ss_pred             CCCCCCCcccCCccccccccccccCCC---ceEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCCEEE
Q 003907          322 PDGSSSPVSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGTLLV  385 (787)
Q Consensus       322 p~~s~~~~s~s~~~~~~~~~~~s~~~d---G~V~IwDl~s~~~v~~~~a-------------H~~pIsaLaFSpdG~lLA  385 (787)
                      .......+.++++.+    .++.+..+   |.|+|||+.+++.+..+.+             |..+|.+++|+|+|++|+
T Consensus       232 ~~~~i~~i~~~~~~~----~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          232 NSNSIRSVKFSPQGS----LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             CCCCEEEEEECSSTT----EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             cCCccceEEECCCCC----EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence            011112223333322    24456677   9999999999999999999             999999999999999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC---
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS---  443 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-----G~--------------~~a~I~slaFSpDg---  443 (787)
                      +++.|| .|+|||+..       +          ..+..+..     ++              +...|.+++|+|||   
T Consensus       308 ~~~~dg-~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          308 SAGWDG-KLRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             EEETTS-EEEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             EEeCCC-eEEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            999966 599999954       2          45556541     21              14579999999999   


Q ss_pred             -------CEEEEEeCCCeEEEEeCCC
Q 003907          444 -------QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       444 -------~~LAs~S~dgTVhIwdl~~  462 (787)
                             ++|++++.||+|+||++..
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccccceEEEecCCCcEEEEEcCC
Confidence                   7999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-20  Score=194.37  Aligned_cols=275  Identities=13%  Similarity=0.075  Sum_probs=190.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.| .    +   ++.|++|..+| ++|||++ .+.....+..|.++|..+.+.|+.             
T Consensus        14 l~~h~~~v~~~~~-~----~---~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~-------------   71 (313)
T 3odt_A           14 LKGHDQDVRDVVA-V----D---DSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEK-------------   71 (313)
T ss_dssp             ECCCSSCEEEEEE-E----E---TTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTT-------------
T ss_pred             hhCCCCCcEEEEe-c----C---CCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCC-------------
Confidence            4678999999998 3    1   45688888877 9999995 466777888899999999999742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---eEEEEEeC-CCcEEEEEecCCeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLRF-RSSVCMVRCSPRIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg---~~v~tL~f-~s~V~sV~~s~~~La  206 (787)
                      .+|++.+.                                 ++.|++|++...   +.+..+.. ...|.++.++.+.|+
T Consensus        72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  118 (313)
T 3odt_A           72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI  118 (313)
T ss_dssp             TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred             CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence            26655332                                 257999998654   56667764 468999999998888


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCc
Q 003907          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      ++. ++.|++||  +.+....+..+..+             ...+++.|   ++|+.++.+..+     ..|+...    
T Consensus       119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i-----~i~d~~~----  174 (313)
T 3odt_A          119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTI-----KLWQNDK----  174 (313)
T ss_dssp             EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCE-----EEEETTE----
T ss_pred             EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCE-----EEEecCc----
Confidence            866 56799999  66667777665543             23345433   677776654211     1122100    


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                                ..                +.+...     .......+.++++..     ++.+..+|.|++||+.+++.+
T Consensus       175 ----------~~----------------~~~~~~-----~~~~i~~~~~~~~~~-----~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          175 ----------VI----------------KTFSGI-----HNDVVRHLAVVDDGH-----FISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             ----------EE----------------EEECSS-----CSSCEEEEEEEETTE-----EEEEETTSEEEEEETTTCCEE
T ss_pred             ----------eE----------------EEEecc-----CcccEEEEEEcCCCe-----EEEccCCCeEEEEECCchhhh
Confidence                      00                000000     000011111222111     346778999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      ..+.+|..+|.+++|+|+| .|++++.|| .|+|||+..       +          ..+..+..  +...|.+++|+||
T Consensus       219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~v~iwd~~~-------~----------~~~~~~~~--~~~~i~~~~~~~~  277 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNG-DIVSCGEDR-TVRIWSKEN-------G----------SLKQVITL--PAISIWSVDCMSN  277 (313)
T ss_dssp             EEEECCSSCEEEEEECTTS-CEEEEETTS-EEEEECTTT-------C----------CEEEEEEC--SSSCEEEEEECTT
T ss_pred             hhhhcCCceEEEEEEecCC-CEEEEecCC-EEEEEECCC-------C----------ceeEEEec--cCceEEEEEEccC
Confidence            9999999999999999999 588899866 499999864       2          35555543  2347999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCC
Q 003907          443 SQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ++ |++++.||+|+||+++..
T Consensus       278 ~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          278 GD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             SC-EEEEETTSCEEEEESCGG
T ss_pred             CC-EEEEeCCCcEEEEeCCCC
Confidence            99 567899999999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.89  E-value=1.1e-20  Score=203.64  Aligned_cols=250  Identities=14%  Similarity=0.118  Sum_probs=171.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      .++|++.|..+.|..       +++.|++|..+| ++|||++... ++...+..|.++|..+++.|+.            
T Consensus        57 ~~~h~~~v~~~~~sp-------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------  117 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP-------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG------------  117 (345)
T ss_dssp             CSSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS------------
T ss_pred             ccccCCcEEEEEECC-------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC------------
Confidence            357889999999963       366888888766 9999996432 3455678899999999999742            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEeC-CCcEEEEEecC--C
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLRF-RSSVCMVRCSP--R  203 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~f-~s~V~sV~~s~--~  203 (787)
                       .+|+..+.                                 +++|++||+++++   ++..+.. ...|..+++++  +
T Consensus       118 -~~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A          118 -NLLATCSR---------------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             -SEEEEEET---------------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             -CEEEEEEC---------------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence             26665332                                 2589999998764   4556654 45899999987  5


Q ss_pred             eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCC
Q 003907          204 IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLT  278 (787)
Q Consensus       204 ~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt  278 (787)
                      +|+++. ++.|++||+.+.+.  ..++..|..+             ...++++|  ++||.++.                
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s~----------------  214 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCSD----------------  214 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET----------------
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEeC----------------
Confidence            777765 56899999887653  3455555442             34566666  55655543                


Q ss_pred             CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-
Q 003907          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-  357 (787)
Q Consensus       279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-  357 (787)
                                                                                           ||+|+|||.. 
T Consensus       215 ---------------------------------------------------------------------D~~v~iW~~~~  225 (345)
T 3fm0_A          215 ---------------------------------------------------------------------DRTVRIWRQYL  225 (345)
T ss_dssp             ---------------------------------------------------------------------TSCEEEEEEEC
T ss_pred             ---------------------------------------------------------------------CCeEEEecccc
Confidence                                                                                 3333344321 


Q ss_pred             --------------CCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          358 --------------TRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       358 --------------s~~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                                    ..+++..+.+ |...|.+++|+|++.+||+++.|+. |+||++.+...   ..      .......
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~---~~------~~~~~~~  295 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD---PQ------QPTFSLT  295 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC---TT------SCCEEEE
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC---cc------eeeEEEE
Confidence                          1124455555 8999999999999999999999775 99999854210   00      0011112


Q ss_pred             EEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ..+..+ +...|.+|+|+|++ .+||++|.||+|+||++...
T Consensus       296 ~~~~~~-h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          296 AHLHQA-HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             EEETTS-SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             eeeccc-ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            222334 34579999999998 59999999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=3e-20  Score=195.24  Aligned_cols=264  Identities=12%  Similarity=0.111  Sum_probs=175.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----eeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----FNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~----~~ells~~dg~V~~v~~lP~P~~~~~~d~F  126 (787)
                      ..+|++.|..+.|..      ..+++|++|..+| ++|||+.....    ....+..|.++|.++.+.|+.         
T Consensus        34 L~GH~~~V~~v~~sp------~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg---------   98 (340)
T 4aow_A           34 LKGHNGWVTQIATTP------QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG---------   98 (340)
T ss_dssp             ECCCSSCEEEEEECT------TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---------
T ss_pred             ECCccCCEEEEEEeC------CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---------
Confidence            568999999999962      1256888888776 99999965322    344567788999999998742         


Q ss_pred             cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 003907          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R  203 (787)
Q Consensus       127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~  203 (787)
                          .+|+..+.                                 ++.|++|+...+......... ..+..+.+++  +
T Consensus        99 ----~~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (340)
T 4aow_A           99 ----QFALSGSW---------------------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR  141 (340)
T ss_dssp             ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             ----CEEEEEcc---------------------------------cccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence                26654321                                 258999999999988887755 4666666665  5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907          204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       204 ~LaV~~-~~~I~iwD~~T~e~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      .|+++. ++.+++||+.......... .+...             ...       +++.....                 
T Consensus       142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~-----------------  184 (340)
T 4aow_A          142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------VSC-------VRFSPNSS-----------------  184 (340)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECSSSCSSC-------------EEE-------EEECSCSS-----------------
T ss_pred             cceeecCCCeEEEEEeCCCceEEEEeccccCc-------------ccc-------eEEccCCC-----------------
Confidence            666654 5679999987654321111 11110             111       12211100                 


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                               ..                                                ..+++..|+.|++||+.+++.
T Consensus       185 ---------~~------------------------------------------------~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          185 ---------NP------------------------------------------------IIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             ---------SC------------------------------------------------EEEEEETTSCEEEEETTTTEE
T ss_pred             ---------Cc------------------------------------------------EEEEEcCCCEEEEEECCCCce
Confidence                     00                                                012345689999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc---CC-----------CCC---Cccc-----cCC-c
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---SG-----------SGN---HKYD-----WNS-S  418 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~---~~-----------~g~---~~~~-----~~~-s  418 (787)
                      +..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+......   ..           .+.   ...+     |+. .
T Consensus       208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             eeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence            9999999999999999999999999999765 999998643100   00           000   0000     000 0


Q ss_pred             ceEEEEEec-------ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          419 HVHLYKLHR-------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       419 ~~~l~~l~r-------G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ...+.++..       ..+...|.+|+|+|||++|++++.||+|+|||+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            011122211       01234699999999999999999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.5e-21  Score=204.18  Aligned_cols=244  Identities=11%  Similarity=0.093  Sum_probs=162.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CceeEeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~------~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      |++.|..+.|..       ++++|++|..+| ++|||++..      .++...+..|.++|..+++.|+.          
T Consensus        57 h~~~v~~v~~sp-------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------  119 (330)
T 2hes_X           57 HKKAIRSVAWRP-------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------  119 (330)
T ss_dssp             CCSCEEEEEECT-------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------
T ss_pred             ccCCEEEEEECC-------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------
Confidence            888899999963       356888888776 999998532      23455677899999999999752          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC----CeEEEEEeCC-CcEEEEEecC
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS----HCYEHVLRFR-SSVCMVRCSP  202 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt----g~~v~tL~f~-s~V~sV~~s~  202 (787)
                         .+||.++.                                 +++|++||++.    .+++.+++.+ ..|.+|++++
T Consensus       120 ---~~las~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X          120 ---YYLATCSR---------------------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             ---CEEEEEET---------------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             ---CEEEEEeC---------------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence               26665332                                 25899999943    3567777654 6899999987


Q ss_pred             --CeEEEEe-CCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907          203 --RIVAVGL-ATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (787)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~T~--e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l  277 (787)
                        ++|+++. ++.|++||+.+.  +++.++.+|..+             ...++++|       +.              
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~--------------  209 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWSSDFDK-------TE--------------  209 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECC-------SS--------------
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEEEEecC-------CC--------------
Confidence              5777765 668999998765  455555555432             11223221       10              


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~  357 (787)
                                  ++.                                                .+++++.||+|+|||+.
T Consensus       210 ------------~~~------------------------------------------------~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          210 ------------GVF------------------------------------------------RLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             ------------SSC------------------------------------------------EEEEEETTSCEEEEEEE
T ss_pred             ------------Cee------------------------------------------------EEEEEeCCCeEEEEEec
Confidence                        000                                                01234578999999986


Q ss_pred             CC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          358 TR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       358 s~--------~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      ++        .....+.. |..+|.+++|++++ +||+++.||+ |+|||+..       +.        ...+.....+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~~--------~~~~~~~~~~  292 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------GE--------WKVFAKRALC  292 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------TE--------EEEEEEESCT
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------Cc--------eEEEeccccc
Confidence            54        34556665 99999999999766 8999999776 99999743       20        0122233234


Q ss_pred             cccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCC
Q 003907          429 ITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       429 ~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +....|.+++|+|  |+++||+++.||+|+||+++.
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3323799999999  799999999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=2.2e-20  Score=200.57  Aligned_cols=262  Identities=17%  Similarity=0.175  Sum_probs=179.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeee-------------eccCcEEEEEEecCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP  117 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells-------------~~dg~V~~v~~lP~P  117 (787)
                      ...|++.|..+.|..      .+++.|++|..+| ++|||++... ....+.             .|.++|..+++.|+.
T Consensus        39 ~~~h~~~v~~~~~s~------~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           39 ERIHGGGINTLDIEP------VEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             CCCCSSCEEEEEECT------TTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             eeccCCcEEEEEEec------CCCCEEEEEcCCCeEEEEECCCCc-ccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            456899999999962      1356888888776 9999997543 333332             388899999998731


Q ss_pred             CCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEE
Q 003907          118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM  197 (787)
Q Consensus       118 ~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~s  197 (787)
                                  ..+|++++.                                 +++|++||+++++.+..+.+...+..
T Consensus       112 ------------~~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (408)
T 4a11_B          112 ------------TGMFTSSSF---------------------------------DKTLKVWDTNTLQTADVFNFEETVYS  146 (408)
T ss_dssp             ------------TTCEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             ------------CcEEEEEeC---------------------------------CCeEEEeeCCCCccceeccCCCceee
Confidence                        125554221                                 26899999999999999999999999


Q ss_pred             EEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecC
Q 003907          198 VRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSN  268 (787)
Q Consensus       198 V~~s~-----~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r-~LAyas~~~~l~~  268 (787)
                      +.+++     .+|+++. ++.|++||+.+++.+.++..|..+             ...++++|  + .|+          
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~ll~----------  203 (408)
T 4a11_B          147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAVSWSPRYDYILA----------  203 (408)
T ss_dssp             EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEEEECSSCTTEEE----------
T ss_pred             eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEEEECCCCCcEEE----------
Confidence            99976     2677655 568999999999888877765442             22344433  1 121          


Q ss_pred             cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (787)
Q Consensus       269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d  348 (787)
                                                                                                 .+..+
T Consensus       204 ---------------------------------------------------------------------------~~~~d  208 (408)
T 4a11_B          204 ---------------------------------------------------------------------------TASAD  208 (408)
T ss_dssp             ---------------------------------------------------------------------------EEETT
T ss_pred             ---------------------------------------------------------------------------EEcCC
Confidence                                                                                       23456


Q ss_pred             ceEEEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCC-
Q 003907          349 GIVVVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN-  410 (787)
Q Consensus       349 G~V~IwDl~s~~-~v~~~---------------~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~~g~-  410 (787)
                      |.|++||+.++. .+..+               .+|..+|.+++|+|+|++|++++.||. |++||+....... ..+. 
T Consensus       209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCC
T ss_pred             CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccc
Confidence            778888876654 33333               679999999999999999999999776 9999986421000 0000 


Q ss_pred             -----C--cc--------------------ccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          411 -----H--KY--------------------DWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       411 -----~--~~--------------------~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                           .  ..                    .|+ .....+..+. + +...|.+++|+||+++|++++.||+|+||++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-G-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-C-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-c-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence                 0  00                    000 0112334443 3 345799999999999999999999999999987


Q ss_pred             CCCc
Q 003907          463 FGGD  466 (787)
Q Consensus       463 ~gg~  466 (787)
                      ....
T Consensus       366 ~~~~  369 (408)
T 4a11_B          366 YEPV  369 (408)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            6443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-20  Score=202.03  Aligned_cols=247  Identities=12%  Similarity=0.118  Sum_probs=168.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEee-ee-ccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ell-s~-~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      ..+|++.|..+.|+.         .+|++|..+| ++|||+.... .+...+ .. |.++|..|++.|+.          
T Consensus        10 ~~~h~~~v~~~~~s~---------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----------   70 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQ---------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----------   70 (330)
T ss_dssp             EECCSSCEEEEEEET---------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred             eccCCCceeeeccCC---------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence            457889999999973         1788888776 9999996422 333444 33 88999999998742          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-------CCeEEEEEeCC-CcEEEEE
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------SHCYEHVLRFR-SSVCMVR  199 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-------tg~~v~tL~f~-s~V~sV~  199 (787)
                         .+||+.+.                                 +++|+|||+.       +.+.+.+++.+ ..|.+|+
T Consensus        71 ---~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  114 (330)
T 2hes_X           71 ---SLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA  114 (330)
T ss_dssp             ---SEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred             ---CEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence               36665332                                 2589999985       34567777654 5899999


Q ss_pred             ecC--CeEEEEe-CCeEEEEECCCC----ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907          200 CSP--RIVAVGL-ATQIYCFDALTL----ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       200 ~s~--~~LaV~~-~~~I~iwD~~T~----e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~  272 (787)
                      |++  ++||++. ++.|++||+.+.    +++.++..|..+             ...++++|       +.         
T Consensus       115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~---------  165 (330)
T 2hes_X          115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHP-------SE---------  165 (330)
T ss_dssp             ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECS-------SS---------
T ss_pred             ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECC-------CC---------
Confidence            987  6777765 568999998432    333444444331             12233322       10         


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                        .                                                 .+++++.||+|+
T Consensus       166 ------------------~-------------------------------------------------~l~s~s~D~~i~  178 (330)
T 2hes_X          166 ------------------A-------------------------------------------------LLASSSYDDTVR  178 (330)
T ss_dssp             ------------------S-------------------------------------------------EEEEEETTSCEE
T ss_pred             ------------------C-------------------------------------------------EEEEEcCCCeEE
Confidence                              0                                                 112345689999


Q ss_pred             EEECCCC--cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          353 VKDFVTR--AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       353 IwDl~s~--~~v~~~~aH~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      |||+.++  +.+..+.+|..+|.+++|+|+  +.+|+|++.|++ |+|||+....   ..+      .........+ .+
T Consensus       179 iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~---~~~------~~~~~~~~~~-~~  247 (330)
T 2hes_X          179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDD---EDD------QQEWVCEAIL-PD  247 (330)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEEC---TTS------CEEEEEEEEC-CS
T ss_pred             EEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCC---ccc------cceeEEeeec-cc
Confidence            9998776  678899999999999999999  789999999776 9999985310   000      0000122222 23


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+...|++++|++++ +|++++.||+|+||++.
T Consensus       248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            345679999999765 89999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.89  E-value=3.8e-20  Score=194.63  Aligned_cols=241  Identities=12%  Similarity=0.112  Sum_probs=177.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|+..|..+.|..       +++.|++|..+| ++|||++. +++...+..|.+.|.++.+.|+.             
T Consensus        61 ~~~h~~~v~~~~~~~-------~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-------------  119 (312)
T 4ery_A           61 ISGHKLGISDVAWSS-------DSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQS-------------  119 (312)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSS-------------
T ss_pred             hccCCCceEEEEEcC-------CCCEEEEECCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCC-------------
Confidence            356778888888863       356888888776 89999964 66777788899999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV  207 (787)
                      .+|+..+.                                 +++|++||+++++.+.++..+ ..|.++.+++  ++|++
T Consensus       120 ~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A          120 NLIVSGSF---------------------------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             SEEEEEET---------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEeC---------------------------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence            26654221                                 258999999999999999765 5899999987  56776


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +. ++.|++||+.+++.+..+.....+            ....++++|       +.                       
T Consensus       167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~~~~~~~~-------~~-----------------------  204 (312)
T 4ery_A          167 SSYDGLCRIWDTASGQCLKTLIDDDNP------------PVSFVKFSP-------NG-----------------------  204 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSCC------------CEEEEEECT-------TS-----------------------
T ss_pred             EeCCCcEEEEECCCCceeeEEeccCCC------------ceEEEEECC-------CC-----------------------
Confidence            55 568999999999877766432221            011223322       10                       


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                          ..                                                 ++.+..||.|+|||+.+++.+..+.
T Consensus       205 ----~~-------------------------------------------------l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          205 ----KY-------------------------------------------------ILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             ----SE-------------------------------------------------EEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             ----CE-------------------------------------------------EEEEcCCCeEEEEECCCCcEEEEEE
Confidence                00                                                 1123468899999999999999999


Q ss_pred             cCCCCeE---EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          367 AHTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       367 aH~~pIs---aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      +|...+.   .....++|.+|++++.||. |+|||+..       +          ..+.++. | +...|.+++|+|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~p~~  291 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKLQ-G-HTDVVISTACHPTE  291 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECSSS
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhhh-c-cCCcEEEEeecCcC
Confidence            9977543   3334478999999999776 99999854       2          3555554 4 34579999999999


Q ss_pred             CEEEEEe--CCCeEEEEeCC
Q 003907          444 QWIAIVS--SKGTCHVFVLS  461 (787)
Q Consensus       444 ~~LAs~S--~dgTVhIwdl~  461 (787)
                      ++|++++  .|++|+||+.+
T Consensus       292 ~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          292 NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SEEEEEECTTTCCEEEEECC
T ss_pred             CceEEEEccCCccEEEecCC
Confidence            9999997  69999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=8.1e-20  Score=190.16  Aligned_cols=270  Identities=14%  Similarity=0.121  Sum_probs=181.4

Q ss_pred             eEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        76 ~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ++|++|.++.++|||++ ++++.+++.  .|.+.|.+|++.|+.             .+||+.+.               
T Consensus        37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs~---------------   87 (318)
T 4ggc_A           37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS---------------   87 (318)
T ss_dssp             SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred             CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCC-------------CEEEEEEC---------------
Confidence            48999998889999996 477777765  456789999998742             26654221               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEec
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLTY  230 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~T~e-~l~tl~t~  230 (787)
                                        +++|++||+++++++.+++.+ ..+..+..++++|+++.. ..+.+|+..+.. .+.++..|
T Consensus        88 ------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~  149 (318)
T 4ggc_A           88 ------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH  149 (318)
T ss_dssp             ------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             ------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence                              368999999999999999876 478889999999988764 568999987654 34445555


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      ...             ...+++.+  ++|+.++.+..     ...|+..+........                      
T Consensus       150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~----------------------  189 (318)
T 4ggc_A          150 SQE-------------VCGLRWAPDGRHLASGGNDNL-----VNVWPSAPGEGGWVPL----------------------  189 (318)
T ss_dssp             SSC-------------EEEEEECTTSSEEEEEETTSC-----EEEEESSCBTTBSCCS----------------------
T ss_pred             cCc-------------eEEEEEcCCCCEEEEEecCcc-----eeEEECCCCcccccce----------------------
Confidence            442             23455655  77877765421     1123322210000000                      


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS  388 (787)
                        ....      ...+......+.+... .....+.+..+++|+|||.......... .|..++..++|+|++..+++++
T Consensus       190 --~~~~------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          190 --QTFT------QHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             --EEEC------CCCSCEEEEEECTTST-TEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE
T ss_pred             --eeec------ccCCceEEEEecCCCC-cEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEE
Confidence              0000      0000000011111110 1112235678899999999988766554 5667899999999999998876


Q ss_pred             --cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          389 --VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       389 --~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                        .|+ .|+|||+..       +          ..+.++. | |...|++|+|||||++||++|.||+|+|||+..
T Consensus       260 g~~d~-~i~iwd~~~-------~----------~~~~~l~-g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          260 GFAQN-QLVIWKYPT-------M----------AKVAELK-G-HTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CTTTC-CEEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EcCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence              445 599999854       3          4677775 5 346799999999999999999999999999964

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.88  E-value=2.2e-20  Score=200.64  Aligned_cols=239  Identities=11%  Similarity=0.199  Sum_probs=165.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|..       ++.+|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.             
T Consensus        72 l~~h~~~V~~~~~~~-------~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~-------------  130 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQ-------ENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDN-------------  130 (343)
T ss_dssp             ECCCSSCEEEEEECS-------STTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSST-------------
T ss_pred             hccCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCC-------------
Confidence            456788898888863       356788888776 99999964 66677788899999999999752             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEecCC----
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSPR----  203 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL---~f~s~V~sV~~s~~----  203 (787)
                      .+|+..+.                                 +++|++||+.........   .+...|..+++++.    
T Consensus       131 ~~l~s~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R          131 RQILSAGA---------------------------------EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             TEEEEEET---------------------------------TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             CEEEEEcC---------------------------------CCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            25654331                                 258999999844333222   23457999999873    


Q ss_pred             --------eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCccee
Q 003907          204 --------IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       204 --------~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~  272 (787)
                              +|+++ .++.|++|| .+.+...++..|..+             ...++++|  ++|               
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~~~s~~g~~l---------------  228 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHLSISPNGKYI---------------  228 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEEEECTTSSEE---------------
T ss_pred             cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEEEECCCCCEE---------------
Confidence                    46654 467899999 456666666665542             22344433  122               


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                                                                            ++++.||.|+
T Consensus       229 ----------------------------------------------------------------------~sgs~dg~v~  238 (343)
T 2xzm_R          229 ----------------------------------------------------------------------ATGGKDKKLL  238 (343)
T ss_dssp             ----------------------------------------------------------------------EEEETTCEEE
T ss_pred             ----------------------------------------------------------------------EEEcCCCeEE
Confidence                                                                                  2345688999


Q ss_pred             EEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----
Q 003907          353 VKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----  426 (787)
Q Consensus       353 IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-----  426 (787)
                      |||+.+. .....+ .|..+|.+++|+|++.+|++++. ++ |+|||+....     .          ..+..+.     
T Consensus       239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~~-----~----------~~~~~~~~~~~~  300 (343)
T 2xzm_R          239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQS-----K----------APVCTIEAEPIT  300 (343)
T ss_dssp             EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSCC-----S----------CSEEECCCCSGG
T ss_pred             EEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCCC-----C----------CceEEeecCcch
Confidence            9999543 334444 35567999999999999886654 55 9999986421     0          1112221     


Q ss_pred             -----cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          427 -----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       427 -----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                           .| +...|.+++|+|||++|++++.||+|+||++..
T Consensus       301 ~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          301 KAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             GBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             hhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                 12 334699999999999999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4e-21  Score=208.17  Aligned_cols=253  Identities=11%  Similarity=0.103  Sum_probs=179.0

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      .+.+.|..+.|..       +++.|++|..+| ++|||+..   .......+..|.++|.++++.|+.            
T Consensus        65 ~~~~~v~~~~~s~-------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------  125 (416)
T 2pm9_A           65 QVDSKFNDLDWSH-------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------  125 (416)
T ss_dssp             CCSSCEEEEEECS-------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------
T ss_pred             ecCCceEEEEECC-------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------
Confidence            3677899888853       356788887765 99999975   133666778899999999998741            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCcEEEEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVR  199 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~------~v~tL----~f~s~V~sV~  199 (787)
                      ..+|++ ++.                                +++|++||+++++      ....+    .+...|.+++
T Consensus       126 ~~~l~s-~~~--------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A          126 DNVLAS-GGN--------------------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             TTBEEE-ECS--------------------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             CCEEEE-EcC--------------------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            125544 211                                2589999999887      43333    2446899999


Q ss_pred             ecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccc
Q 003907          200 CSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ  275 (787)
Q Consensus       200 ~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q  275 (787)
                      +++   ++|+++. ++.|++||+.+++.+.++..+....    +.   ......++++|       +             
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~---~~~v~~~~~~~-------~-------------  225 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GI---KQQLSVVEWHP-------K-------------  225 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CC---CCCEEEEEECS-------S-------------
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----cc---CCceEEEEECC-------C-------------
Confidence            987   4677765 5679999999998877776432100    00   00122333332       1             


Q ss_pred             cCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCc---eEE
Q 003907          276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVV  352 (787)
Q Consensus       276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG---~V~  352 (787)
                                    +..+                                                ++.+..+|   .|+
T Consensus       226 --------------~~~~------------------------------------------------l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          226 --------------NSTR------------------------------------------------VATATGSDNDPSIL  243 (416)
T ss_dssp             --------------CTTE------------------------------------------------EEEEECCSSSCCCC
T ss_pred             --------------CCCE------------------------------------------------EEEEECCCCCceEE
Confidence                          0000                                                01122344   899


Q ss_pred             EEECCCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          353 VKDFVTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       353 IwDl~s~-~~v~~~~-aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      +||+.++ +.+..+. +|..+|.+++|+| +|++|++++.||+ |+|||+..       +          ..+..+. + 
T Consensus       244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~-------~----------~~~~~~~-~-  303 (416)
T 2pm9_A          244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES-------A----------EQLSQFP-A-  303 (416)
T ss_dssp             EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS-------C----------CEEEEEE-C-
T ss_pred             EEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC-------C----------ccceeec-C-
Confidence            9999986 6778888 9999999999999 9999999999665 99999854       2          3566665 3 


Q ss_pred             ccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       430 ~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      +...|.+++|+||+ ++|++++.|++|+||++.......
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            34569999999999 899999999999999998765443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=1e-19  Score=199.24  Aligned_cols=269  Identities=12%  Similarity=0.055  Sum_probs=184.7

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeee-ccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~-~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      ..+++.|.++.++|||++. +++..++.. |.++|.++++.|+.             .+|++.+.               
T Consensus       104 ~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~~---------------  154 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG-------------SFLSVGLG---------------  154 (401)
T ss_dssp             TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred             CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC-------------CEEEEECC---------------
Confidence            4577777677799999965 556666555 78899999999742             26665332               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCC-CceeEEEEec
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY  230 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~  230 (787)
                                        +++|++||+.+++.+.++..+ ..|.++.+++++|+++. ++.|++||+.+ .+....+..|
T Consensus       155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence                              257999999999999999754 69999999999888866 56899999984 5556666665


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      ..+             ...++++|  ++||+++.+..+     ..|+..+.            ..+              
T Consensus       217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v-----~iwd~~~~------------~~~--------------  252 (401)
T 4aez_A          217 SSE-------------VCGLAWRSDGLQLASGGNDNVV-----QIWDARSS------------IPK--------------  252 (401)
T ss_dssp             SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTCS------------SEE--------------
T ss_pred             CCC-------------eeEEEEcCCCCEEEEEeCCCeE-----EEccCCCC------------Ccc--------------
Confidence            542             35678887  788888764211     12332211            000              


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccc--cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD--MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s--~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT  386 (787)
                        .++..+      ......+.++++...   .++.  +..||.|++||+.+++.+..+. |..+|.+++|+|+|++|++
T Consensus       253 --~~~~~~------~~~v~~~~~~p~~~~---ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          253 --FTKTNH------NAAVKAVAWCPWQSN---LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             --EEECCC------SSCCCEEEECTTSTT---EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             --EEecCC------cceEEEEEECCCCCC---EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence              001000      011122223332211   1222  3479999999999999988886 5678999999999999999


Q ss_pred             EE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       387 aS--~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ++  .+| .|+|||+..       +        ......++. + +...|.+++|+|||++|++++.||+|+||++....
T Consensus       321 ~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          321 THGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            65  555 599999853       1        012333443 3 34579999999999999999999999999998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.88  E-value=1.3e-20  Score=221.88  Aligned_cols=280  Identities=15%  Similarity=0.175  Sum_probs=192.7

Q ss_pred             hceeeeeccCCcceeeehhhcccccceeccc--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-
Q 003907           20 SSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-   95 (787)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-   95 (787)
                      ...+.-+-+|..++...+..|...++..+..  ...+|++.|..+.|..      ....+|++|..+| ++|||+...+ 
T Consensus       344 ~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~------~~~~~l~s~s~D~~i~~W~~~~~~~  417 (694)
T 3dm0_A          344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI------DNADIIVSASRDKSIILWKLTKDDK  417 (694)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT------TCCSEEEEEETTSEEEEEECCCSTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC------CCCCEEEEEeCCCcEEEEEccCCCc
Confidence            3334334456666655555554444433332  3578999999999863      1246888888876 9999996532 


Q ss_pred             ---ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCC
Q 003907           96 ---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP  172 (787)
Q Consensus        96 ---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p  172 (787)
                         .....+..|.+.|.++.+.|+.             .+|+..+.                                 +
T Consensus       418 ~~~~~~~~~~~h~~~v~~v~~s~~g-------------~~l~sgs~---------------------------------D  451 (694)
T 3dm0_A          418 AYGVAQRRLTGHSHFVEDVVLSSDG-------------QFALSGSW---------------------------------D  451 (694)
T ss_dssp             CSCEEEEEEECCSSCEEEEEECTTS-------------SEEEEEET---------------------------------T
T ss_pred             ccccccceecCCCCcEEEEEECCCC-------------CEEEEEeC---------------------------------C
Confidence               2345678899999999998742             26654221                                 3


Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|+|||+.+++.++++..+ ..|.+|++++  +.|+++ .++.|++||.... ...++......    +.     ....
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----h~-----~~v~  521 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----HR-----DWVS  521 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----CS-----SCEE
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC----CC-----CcEE
Confidence            68999999999999999755 6899999987  566665 4668999997543 23333211000    00     0011


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .++       +..+.                           .                                     
T Consensus       522 ~~~-------~~~~~---------------------------~-------------------------------------  530 (694)
T 3dm0_A          522 CVR-------FSPNT---------------------------L-------------------------------------  530 (694)
T ss_dssp             EEE-------ECSCS---------------------------S-------------------------------------
T ss_pred             EEE-------EeCCC---------------------------C-------------------------------------
Confidence            122       21110                           0                                     


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                ...+++++.||+|+|||+.+++.+..+.+|..+|.+++|+|+|++|+|++.||+ |+|||+..       
T Consensus       531 ----------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~-------  592 (694)
T 3dm0_A          531 ----------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE-------  592 (694)
T ss_dssp             ----------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-------
T ss_pred             ----------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------
Confidence                      001224567899999999999999999999999999999999999999999775 99999954       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      +          .+++.+.   ....|.+++|+||+.+|+++++ +.|+|||+....
T Consensus       593 ~----------~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~  634 (694)
T 3dm0_A          593 G----------KKLYSLE---ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS  634 (694)
T ss_dssp             T----------EEEECCB---CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred             C----------ceEEEec---CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence            2          4555543   2346999999999999888764 569999998643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.87  E-value=3.1e-20  Score=200.63  Aligned_cols=282  Identities=13%  Similarity=0.067  Sum_probs=187.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCC-eEEEEEecCc-EEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFK-QVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~-~vL~lG~~~G-~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      ..+|.+.|..+.|..       ++ ++|++|..+| ++|||+.. ++....+.  .|.++|..+.+.|.           
T Consensus        69 ~~~h~~~v~~~~~~~-------~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~-----------  129 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHP-------THPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQF-----------  129 (383)
T ss_dssp             ECCCSSCEEEEEECS-------SCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETT-----------
T ss_pred             ccCCCCCEEEEEECC-------CCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCC-----------
Confidence            567889999999974       23 6888888776 99999964 44555554  58899999999872           


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C---CcEEEEEecC-
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R---SSVCMVRCSP-  202 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~---s~V~sV~~s~-  202 (787)
                       ...+|++.+.                                 +++|++||+++ +.+..+.. .   ..|.++++++ 
T Consensus       130 -~~~~l~s~~~---------------------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B          130 -NTNQLFVSSI---------------------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             -EEEEEEEEET---------------------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT
T ss_pred             -CCCEEEEEeC---------------------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCC
Confidence             1125654321                                 36899999986 55555543 2   5799999987 


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecCcceeccccC
Q 003907          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSNSGRLSPQNL  277 (787)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r-~LAyas~~~~l~~~g~~s~q~l  277 (787)
                       ++|+++. ++.|++||+ +++.+.++..|..+             ...++++|  + +|+.++.+..+     ..|+..
T Consensus       175 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~  235 (383)
T 3ei3_B          175 RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATV-----KLWDLR  235 (383)
T ss_dssp             TTEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEE-----EEEEGG
T ss_pred             CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEE-----EEEeCC
Confidence             6777765 568999998 67778888776553             45688888  4 77877655211     123322


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC-ccccccccccccCCCceEEEEEC
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDF  356 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~-~~~~~~~~~~s~~~dG~V~IwDl  356 (787)
                      +...        .+.++                +.+ .      ..+....+.+++ +.+    .++.+..||.|+|||+
T Consensus       236 ~~~~--------~~~~~----------------~~~-~------~~~~v~~~~~s~~~~~----~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          236 NIKD--------KNSYI----------------AEM-P------HEKPVNAAYFNPTDST----KLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             GCCS--------TTCEE----------------EEE-E------CSSCEEEEEECTTTSC----EEEEEESSSEEEEEET
T ss_pred             CCCc--------ccceE----------------EEe-c------CCCceEEEEEcCCCCC----EEEEEcCCCcEEEEEC
Confidence            2100        00010                000 0      001112223333 222    3456778999999999


Q ss_pred             CCCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          357 VTRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       357 ~s~~~v~~~~aH~-----------------~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      .+++.+..+..|.                 ..+.+++|+|+|++  +++.||. |+|||+..       +          
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~----------  340 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G----------  340 (383)
T ss_dssp             TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C----------
T ss_pred             CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C----------
Confidence            9988777777653                 34455777777776  6677665 99999864       3          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+..+....+...+..++|+|||++|++++ |++|+||+++.
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4666775433345677889999999999997 89999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=1.5e-20  Score=198.67  Aligned_cols=307  Identities=11%  Similarity=0.081  Sum_probs=189.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---Cc-EEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---NG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~---~G-~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      .+|++.|..+.|..    +  ...++++|..   +| ++|||++. ++...+ ...|.++|.++.+.|+..         
T Consensus        15 ~~h~~~v~~~~~~p----~--~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---------   78 (357)
T 3i2n_A           15 KGFNYTVFDCKWVP----C--SAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSL---------   78 (357)
T ss_dssp             EECSSCEEEEEECT----T--SSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCT---------
T ss_pred             cCCCCceEEEEEcC----C--CceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCC---------
Confidence            45888999999973    1  2467778865   55 99999965 444433 346788999999987410         


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CcEEEEEe-----
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMVRC-----  200 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-~v~tL~f~-s~V~sV~~-----  200 (787)
                       ...+|++.+.                                 +++|++||+.+++ .+..+..+ ..|.++++     
T Consensus        79 -~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  124 (357)
T 3i2n_A           79 -QQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG  124 (357)
T ss_dssp             -TTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred             -CCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence             0235655321                                 2589999999988 88888754 68999965     


Q ss_pred             -cC--CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeE----Ecc--ceEEEecCCceecCc
Q 003907          201 -SP--RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMA----VGP--RWLAYASNTLLLSNS  269 (787)
Q Consensus       201 -s~--~~LaV~~-~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lA----lsp--r~LAyas~~~~l~~~  269 (787)
                       ++  +.|+++. ++.|++||+.+++ .+.++..+....         ......++    ++|  ++|++++.+..+   
T Consensus       125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~l~~~~~d~~i---  192 (357)
T 3i2n_A          125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---------KRDCWTVAFGNAYNQEERVVCAGYDNGDI---  192 (357)
T ss_dssp             CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---------CCCEEEEEEECCCC-CCCEEEEEETTSEE---
T ss_pred             cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---------CCceEEEEEEeccCCCCCEEEEEccCCeE---
Confidence             33  4777765 5689999999987 566665433210         00123344    344  778777654211   


Q ss_pred             ceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCc
Q 003907          270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG  349 (787)
Q Consensus       270 g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG  349 (787)
                        ..|+..+.            .+...                 ..      .......+.+++.. ..+..++.+..+|
T Consensus       193 --~i~d~~~~------------~~~~~-----------------~~------~~~~v~~~~~~~~~-~~~~~l~~~~~dg  234 (357)
T 3i2n_A          193 --KLFDLRNM------------ALRWE-----------------TN------IKNGVCSLEFDRKD-ISMNKLVATSLEG  234 (357)
T ss_dssp             --EEEETTTT------------EEEEE-----------------EE------CSSCEEEEEESCSS-SSCCEEEEEESTT
T ss_pred             --EEEECccC------------ceeee-----------------cC------CCCceEEEEcCCCC-CCCCEEEEECCCC
Confidence              12222111            00000                 00      00001112222200 0112244677899


Q ss_pred             eEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCccc---CCCCCCccccCCcce
Q 003907          350 IVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMR---SGSGNHKYDWNSSHV  420 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~-----aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~---~~~g~~~~~~~~s~~  420 (787)
                      .|++||+.+++.+..+.     +|..+|.+++|+|+|. +|++++.|| .|+|||+......   ...|. .........
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~-~~~~~~~~~  312 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGI-EMGVAGSVS  312 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSC-CCCCCCEEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCC-ccccccccc
Confidence            99999998776554444     9999999999999999 899999976 5999998642100   00000 000001123


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEE-EEeCCCeEEEEeCCCC
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF  463 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LA-s~S~dgTVhIwdl~~~  463 (787)
                      .+..+. + +...|.+++|+|||++|+ +++.|++|+||++...
T Consensus       313 ~~~~~~-~-~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          313 LLQNVT-L-STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEE-C-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             eeeccc-c-CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            455554 3 345799999999999998 7999999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.87  E-value=1.5e-19  Score=200.14  Aligned_cols=276  Identities=15%  Similarity=0.127  Sum_probs=196.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|+         +..|++|..+| ++|||++. ++....+..|.++|.++.+.+             . 
T Consensus       155 ~~~h~~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~-------------~-  210 (445)
T 2ovr_B          155 LVGHTGGVWSSQMR---------DNIIISGSTDRTLKVWNAET-GECIHTLYGHTSTVRCMHLHE-------------K-  210 (445)
T ss_dssp             CCCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEET-------------T-
T ss_pred             EcCCCCCEEEEEec---------CCEEEEEeCCCeEEEEECCc-CcEEEEECCCCCcEEEEEecC-------------C-
Confidence            44577788888886         23677777766 99999964 667777888999999998752             2 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL  209 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~  209 (787)
                       +|++.+.                                 +++|++||+.+++.+.++..+ ..|.++.++.+.|+++.
T Consensus       211 -~l~s~s~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  256 (445)
T 2ovr_B          211 -RVVSGSR---------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  256 (445)
T ss_dssp             -EEEEEET---------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             -EEEEEeC---------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEc
Confidence             5544221                                 268999999999999999755 68999999888888766


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (787)
Q Consensus       210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp  288 (787)
                       ++.|++||+.+++.+.++..|..+             ...+++..++|+.++.+..+     ..|+..+.         
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i-----~i~d~~~~---------  309 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG---------  309 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC---------
T ss_pred             CCCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeE-----EEEECCCC---------
Confidence             567999999999988888766543             24566666888887654211     12332111         


Q ss_pred             CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-
Q 003907          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-  367 (787)
Q Consensus       289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a-  367 (787)
                         ..+                +++..+.      .......+      .+..++.+..||.|++||+.+++.+..+.. 
T Consensus       310 ---~~~----------------~~~~~~~------~~v~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  358 (445)
T 2ovr_B          310 ---NCI----------------HTLTGHQ------SLTSGMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQGP  358 (445)
T ss_dssp             ---CEE----------------EEECCCC------SCEEEEEE------ETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             ---CEE----------------EEEcCCc------ccEEEEEE------eCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence               100                0111000      00000001      111245677899999999999999999986 


Q ss_pred             --CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC
Q 003907          368 --HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY  442 (787)
Q Consensus       368 --H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpD  442 (787)
                        |..+|.+++|+  +++|++++.|| .|+|||+..       +          ..+..+.   .+.+...|++++|+||
T Consensus       359 ~~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          359 NKHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             TSCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CCCCCCEEEEEEC--CCEEEEEeCCC-eEEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecCC
Confidence              88999999996  68999999976 499999864       3          3455542   2334567999999999


Q ss_pred             CCEEEEEeCCCe----EEEEeCCCC
Q 003907          443 SQWIAIVSSKGT----CHVFVLSPF  463 (787)
Q Consensus       443 g~~LAs~S~dgT----VhIwdl~~~  463 (787)
                      +.+||+++.||+    ++|||++..
T Consensus       419 ~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          419 KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999998    999999753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.87  E-value=4.6e-21  Score=209.40  Aligned_cols=260  Identities=16%  Similarity=0.153  Sum_probs=170.7

Q ss_pred             EEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCC
Q 003907           87 QVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSG  166 (787)
Q Consensus        87 qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~  166 (787)
                      .+|+... ..+...+..|.++|.++++.|+.             .+|+..+.                            
T Consensus        49 ~~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s~----------------------------   86 (380)
T 3iz6_a           49 VSFNPTD-LVCCRTLQGHSGKVYSLDWTPEK-------------NWIVSASQ----------------------------   86 (380)
T ss_dssp             CCCCCCC-CEEEEEECCCSSCEEEEEECTTS-------------SCEEEEET----------------------------
T ss_pred             cccccce-eEEeecccccccEEEEEEEcCCC-------------CEEEEEeC----------------------------
Confidence            3455532 44567788999999999999752             25654221                            


Q ss_pred             CCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCce-------eEEEEecCCccc
Q 003907          167 NCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN-------KFSVLTYPVPQL  235 (787)
Q Consensus       167 ~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~-------l~tl~t~p~p~~  235 (787)
                           +++|+|||+.+++.+++++.+ ..|.++++++  ++||++. +..|++||+.+...       ...+.+|...  
T Consensus        87 -----D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~--  159 (380)
T 3iz6_a           87 -----DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY--  159 (380)
T ss_dssp             -----TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC--
T ss_pred             -----CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc--
Confidence                 369999999999999999876 4799999988  6777754 66799999876431       1222223221  


Q ss_pred             CCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907          236 AGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (787)
Q Consensus       236 ~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt  312 (787)
                                 ...+++.|   ..|+.++.+..     ...|+..++..            +.                .
T Consensus       160 -----------v~~~~~~~~~~~~l~s~s~D~~-----i~~wd~~~~~~------------~~----------------~  195 (380)
T 3iz6_a          160 -----------ASSCQYVPDQETRLITGSGDQT-----CVLWDVTTGQR------------IS----------------I  195 (380)
T ss_dssp             -----------CCCCBCCSSSSSCEEEECTTSC-----EEEECTTTCCE------------EE----------------E
T ss_pred             -----------eEEEEEecCCCCEEEEECCCCc-----EEEEEcCCCcE------------EE----------------E
Confidence                       22344554   45777665421     12244322110            00                0


Q ss_pred             ecccccccCCCCC---CCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907          313 LSKYCQELLPDGS---SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       313 ls~~~~~l~p~~s---~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS  388 (787)
                      +..    ..+.+.   ...+.+++   .....+++++.||+|+|||+. ..+.+..+.+|..+|.+++|+|+|++|||+|
T Consensus       196 ~~~----~~~~~h~~~v~~~~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  268 (380)
T 3iz6_a          196 FGS----EFPSGHTADVLSLSINS---LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS  268 (380)
T ss_dssp             ECC----CSSSSCCSCEEEEEECS---SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred             eec----ccCCCCccCeEEEEeec---CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence            000    000000   01111111   011234578899999999997 4578889999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-----~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .||+ |+|||+..       +          ..+..+.....     ...|.+++|+|||++|++++.||+|+|||+...
T Consensus       269 ~D~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          269 DDGT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             SSSC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             CCCe-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            9776 99999964       2          34444432211     124889999999999999999999999998754


Q ss_pred             C
Q 003907          464 G  464 (787)
Q Consensus       464 g  464 (787)
                      .
T Consensus       331 ~  331 (380)
T 3iz6_a          331 E  331 (380)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.5e-21  Score=208.35  Aligned_cols=252  Identities=13%  Similarity=0.191  Sum_probs=175.4

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCceeEeee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~~~~~ells-~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      +.|.+.|..+.|..      .+++.|++|..+| ++|||+..   .......+. .|.++|.+|++.|+.          
T Consensus        60 ~~h~~~V~~~~~s~------~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------  123 (437)
T 3gre_A           60 ENEPNSITSSAVSP------GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF----------  123 (437)
T ss_dssp             TTTTSCEEEEEEEC------SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----------
T ss_pred             cCCCCceEEEEECC------CCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----------
Confidence            67889999999973      1356888888877 89999965   221222222 588999999998642          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC---CCeEEEEEeC-------------
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLRF-------------  191 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk---tg~~v~tL~f-------------  191 (787)
                         .+|++.+.                                 +++|++||+.   +++.+..+..             
T Consensus       124 ---~~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A          124 ---DAFAVSSK---------------------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             ---SEEEEEET---------------------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             ---CEEEEEeC---------------------------------CCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence               26655331                                 2689999994   6665554442             


Q ss_pred             CCcEEEEEe--c--CCeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 003907          192 RSSVCMVRC--S--PRIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN  262 (787)
Q Consensus       192 ~s~V~sV~~--s--~~~LaV~~-~~~I~iwD~~T~e~l~tl~t--~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~  262 (787)
                      ...+.++.+  +  .++|+++. ++.|++||+.+++.+.++..  |..+             ...++++|  ++|     
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~~~s~~~~~l-----  229 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSICIDEECCVL-----  229 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEEEECTTSCEE-----
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEEEECCCCCEE-----
Confidence            234555542  2  35677655 56899999999999888876  2221             22334332  111     


Q ss_pred             CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc
Q 003907          263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG  342 (787)
Q Consensus       263 ~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~  342 (787)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (437)
T 3gre_A          230 --------------------------------------------------------------------------------  229 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCceEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaL----aFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      +.+..||.|+|||+.+++.+..+. .|..+|.++    +|+|+|.+|++++.|| .|+|||+...               
T Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~---------------  293 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKG---------------  293 (437)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTT---------------
T ss_pred             EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCC---------------
Confidence            134568999999999999999987 888999999    5556799999999966 5999999642               


Q ss_pred             cceEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          418 SHVHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       418 s~~~l~~l~r-----------------------G-~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                        ..+..+..                       | .+...|.+++|+ ++++|++++.|++|+|||+........+..|.
T Consensus       294 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          294 --HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             --EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             --cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence              23333321                       1 133469999999 88999999999999999998765555555553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.87  E-value=4.9e-20  Score=200.59  Aligned_cols=254  Identities=13%  Similarity=0.116  Sum_probs=177.1

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      +++.|++|..+| ++|||++ .+....++..|.++|.++++.|+.             .+|++.+.              
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s~--------------  159 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSG-------------EALISSSQ--------------  159 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred             CCCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCCC-------------CEEEEEeC--------------
Confidence            356788888776 9999996 466777778899999999998742             26655331              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEE
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~  228 (787)
                                         +++|++||+++++.+.+++. ...|.++++++  +.|+++. ++.|++||+.+++.+.++.
T Consensus       160 -------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          160 -------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             -------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             -------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence                               26899999999999999985 46899999987  5677655 5679999999999888887


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      .+..+.          .....+++.      ++....+.       ....                              
T Consensus       221 ~~~~~~----------~~v~~~~~~------~~~~~~~~-------~~~~------------------------------  247 (420)
T 3vl1_A          221 RKENPH----------DGVNSIALF------VGTDRQLH-------EIST------------------------------  247 (420)
T ss_dssp             BTTBTT----------CCEEEEEEE------ECCCSSCG-------GGCC------------------------------
T ss_pred             cCCCCC----------CCccEEEEe------cCCcceee-------eccc------------------------------
Confidence            643320          011223321      11110000       0000                              


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEE
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVT  386 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~-lLAT  386 (787)
                                     .....+.++++.+    .++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|. +|++
T Consensus       248 ---------------~~v~~~~~s~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          248 ---------------SKKNNLEFGTYGK----YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             ---------------CCCCTTCSSCTTE----EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             ---------------CcccceEEcCCCC----EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence                           0011122222222    23456789999999999998777775 5899999999999999 9999


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ++.||. |+|||+..       +.         ..+..+. +++...|.++.| +|+++|++++.|++|+||++.....
T Consensus       309 g~~dg~-i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          309 GYENGM-LAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             EETTSE-EEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred             EeCCCe-EEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence            999764 99999964       10         1234443 334456888854 5889999999999999999987433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=7.5e-20  Score=202.58  Aligned_cols=231  Identities=16%  Similarity=0.227  Sum_probs=174.2

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .++.+.|....||         ++.|++|..+| ++|||++ .++....+..|.++|.++.+.             ++  
T Consensus       130 ~~~~~~v~~~~~d---------~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------~~--  184 (435)
T 1p22_A          130 SETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------ER--  184 (435)
T ss_dssp             CSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------SS--
T ss_pred             cCCCCcEEEEEEC---------CCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC-------------CC--
Confidence            4566779888885         35677777766 9999995 467778888999999998862             22  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-  209 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-  209 (787)
                      +|++.+.                                 +++|++||+++++.+.++..+ ..|.+++++++.|+++. 
T Consensus       185 ~l~sg~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  231 (435)
T 1p22_A          185 VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK  231 (435)
T ss_dssp             EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred             EEEEEcC---------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence            6654221                                 258999999999999999755 58999999998888866 


Q ss_pred             CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~---tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      ++.|++||+.+++...   .+..|..+             ...+++..++                              
T Consensus       232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~------------------------------  268 (435)
T 1p22_A          232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKY------------------------------  268 (435)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTE------------------------------
T ss_pred             CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCE------------------------------
Confidence            5679999998877542   22222221             1111111111                              


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                                                             ++.+..||.|++||+.+++.+..+.
T Consensus       269 -------------------------------------------------------l~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          269 -------------------------------------------------------IVSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             -------------------------------------------------------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             -------------------------------------------------------EEEEeCCCeEEEEECCcCcEEEEEc
Confidence                                                                   1234568999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      +|..+|.+++|  ++.+|++++.||+ |+|||+..       +          ..+..+. + +...|.+++|  |+++|
T Consensus       294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l  349 (435)
T 1p22_A          294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI  349 (435)
T ss_dssp             CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence            99999999999  5789999999776 99999964       3          4566664 3 3457999999  89999


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 003907          447 AIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       447 As~S~dgTVhIwdl~~~  463 (787)
                      ++++.||+|+|||+...
T Consensus       350 ~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          350 VSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EEEETTSCEEEEEHHHH
T ss_pred             EEEeCCCcEEEEECCCC
Confidence            99999999999998643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2e-19  Score=199.41  Aligned_cols=258  Identities=16%  Similarity=0.191  Sum_probs=176.3

Q ss_pred             CCCCCCc-EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~-v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|.+. +.++.||         +..|++|+.+| ++|||+.. ++....+..|.++|.++++.|+            .
T Consensus       117 l~~h~~~v~~~~~~~---------~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~------------~  174 (464)
T 3v7d_B          117 LRGHMTSVITCLQFE---------DNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG------------G  174 (464)
T ss_dssp             EECCSSSCEEEEEEE---------TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECST------------T
T ss_pred             EcCCCCCcEEEEEEC---------CCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCC------------C
Confidence            3456666 4677775         24788877776 99999954 6677778899999999998753            1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC----Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP----RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~----~~  204 (787)
                        +|++.+.                                 +++|++||+++++.+.++.. .+.|.++++++    ++
T Consensus       175 --~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  219 (464)
T 3v7d_B          175 --ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  219 (464)
T ss_dssp             --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred             --EEEEEeC---------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence              5544221                                 25899999999999999984 56999999873    56


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      |+++. ++.|++||+.+.+..........              ...+...|      ...+.+                 
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~------~~~~~~-----------------  262 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTP------EENPYF-----------------  262 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CC--------------SSEEESCG------GGCTTE-----------------
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCC--------------cceEeecc------CCCeEE-----------------
Confidence            66655 56899999998765443321111              00011100      000000                 


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                                +                ..+.++..        .....+    ..+..++.+..||.|++||+.+++.+.
T Consensus       263 ----------~----------------~~~~~~~~--------~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          263 ----------V----------------GVLRGHMA--------SVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             ----------E----------------EEECCCSS--------CEEEEE----EETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ----------E----------------EEccCccc--------eEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence                      0                00000000        000000    001123456789999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .+.+|..+|.+++|+|+|++|++++.||+ |+|||+..       +          ..+..+. + +...|.+++|+  +
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~--~  362 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-G-HTALVGLLRLS--D  362 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEEC--S
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C----------cEEEEEe-C-CCCcEEEEEEc--C
Confidence            99999999999999999999999999776 99999854       3          4666664 3 34579999998  5


Q ss_pred             CEEEEEeCCCeEEEEeCCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ++|++++.||+|++||+...
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEEeCCCcEEEEECCCC
Confidence            89999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2e-21  Score=210.60  Aligned_cols=263  Identities=12%  Similarity=0.068  Sum_probs=173.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEe--eeeccCcEEEEEEecCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNEL--VSKRDGPVSFLQMQPFPVKDDG  122 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~el--ls~~dg~V~~v~~lP~P~~~~~  122 (787)
                      ...|++.|..+.|..    +  .+++|++|..+| ++|||+....      ....+  +..|.++|..+.+.|+.     
T Consensus       109 ~~~h~~~v~~~~~~~----~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----  177 (416)
T 2pm9_A          109 FSNHSSSVKTVKFNA----K--QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-----  177 (416)
T ss_dssp             CCCSSSCCCEEEECS----S--STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-----
T ss_pred             ccCCccceEEEEEcC----C--CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-----
Confidence            345667777777753    1  256788887766 9999997643      22222  35677899999998741     


Q ss_pred             CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-------CCcE
Q 003907          123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-------RSSV  195 (787)
Q Consensus       123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-------~s~V  195 (787)
                             ..+|++ ++.                                +++|++||+++++.+.++..       ...|
T Consensus       178 -------~~~l~~-~~~--------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          178 -------AHVFAS-AGS--------------------------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             -------TTEEEE-ESS--------------------------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             -------CcEEEE-EcC--------------------------------CCCEEEEECCCCCcceEEeccccccccCCce
Confidence                   125544 221                                25899999999999999987       4689


Q ss_pred             EEEEecC---CeEEEEeCC----eEEEEECCCCc-eeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCcee
Q 003907          196 CMVRCSP---RIVAVGLAT----QIYCFDALTLE-NKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL  266 (787)
Q Consensus       196 ~sV~~s~---~~LaV~~~~----~I~iwD~~T~e-~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l  266 (787)
                      .++++++   ++|+++..+    .|++||+.+++ .+..+. .|..+             ...++++|       .+   
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v~~~~~s~-------~~---  274 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------ILSLDWCH-------QD---  274 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------EEEEEECS-------SC---
T ss_pred             EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------eeEEEeCC-------CC---
Confidence            9999997   367777655    89999999863 333333 22221             12222221       00   


Q ss_pred             cCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccC
Q 003907          267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD  346 (787)
Q Consensus       267 ~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~  346 (787)
                                              +.                                                .++.+.
T Consensus       275 ------------------------~~------------------------------------------------~l~s~~  282 (416)
T 2pm9_A          275 ------------------------EH------------------------------------------------LLLSSG  282 (416)
T ss_dssp             ------------------------SS------------------------------------------------CEEEEE
T ss_pred             ------------------------CC------------------------------------------------eEEEEe
Confidence                                    00                                                012345


Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE-
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-  424 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~-  424 (787)
                      .||.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++.|| .|+|||+......................++. 
T Consensus       283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (416)
T 2pm9_A          283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN-KIEVQTLQNLTNTLDEQETETKQQESETDFWNN  361 (416)
T ss_dssp             SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS-EEEEEESCCCCCSSCC-----------------
T ss_pred             CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC-cEEEEEccCCCCCcccccccccccCCccccccc
Confidence            68999999999999999999999999999999999 8999999966 59999996421000000000000000000000 


Q ss_pred             ----------------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          425 ----------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       425 ----------------l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                                      .... +...+.+++|||||++||+++.|++|+||++.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          362 VSREESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             -----CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                            0000 223577899999999999999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.87  E-value=7.7e-20  Score=215.28  Aligned_cols=240  Identities=16%  Similarity=0.184  Sum_probs=171.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|..       +++.|++|..+| ++|||+.. +.....+..|.++|.++.+.|+.             
T Consensus       426 ~~~h~~~v~~v~~s~-------~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~-------------  484 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSS-------DGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDN-------------  484 (694)
T ss_dssp             EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS-------------
T ss_pred             ecCCCCcEEEEEECC-------CCCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCC-------------
Confidence            356788888888863       467888888876 99999954 66667788899999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEecCC---
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR---  203 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~----f~s~V~sV~~s~~---  203 (787)
                      .+|+..+.                                 +++|++||+..........    +...|.+++++++   
T Consensus       485 ~~l~s~s~---------------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          485 RQIVSASR---------------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SCEEEEET---------------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CEEEEEeC---------------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            25554321                                 2689999987654433322    3357999999873   


Q ss_pred             -eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCC
Q 003907          204 -IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       204 -~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                       .|+++ .++.|++||+.+.++..++..|..+             ...++++|  ++|                      
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l----------------------  576 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-------------VSTVAVSPDGSLC----------------------  576 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECTTSSEE----------------------
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEeCCCCEE----------------------
Confidence             46655 4678999999999888887766542             23344433  111                      


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                                                                     ++++.||.|+|||+.++
T Consensus       577 ---------------------------------------------------------------~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          577 ---------------------------------------------------------------ASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             ---------------------------------------------------------------EEEETTSBCEEEETTTT
T ss_pred             ---------------------------------------------------------------EEEeCCCeEEEEECCCC
Confidence                                                                           23456899999999999


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------------
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------------  427 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r------------  427 (787)
                      +.+..+..| ..|.+++|+|++.+|++++. + .|+|||+...                 ..+.++..            
T Consensus       594 ~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          594 KKLYSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLESK-----------------SIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             EEEECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTTT-----------------EEEEEECCCCC---------
T ss_pred             ceEEEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCCC-----------------CChhhhcccccccccccccc
Confidence            988888655 68999999999999988875 4 3999999642                 12222210            


Q ss_pred             cc-----ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          428 GI-----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       428 G~-----~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      +.     +...+.+++|||||++|++++.||+|+||++..+
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~~  694 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY  694 (694)
T ss_dssp             -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence            00     0113789999999999999999999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.86  E-value=9e-20  Score=194.08  Aligned_cols=240  Identities=11%  Similarity=0.107  Sum_probs=173.2

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .|++.|..+.|..       +++.|++|..+| ++|||++. ++  ....+..|.++|.++.+.|+.             
T Consensus         6 ~~~~~i~~~~~s~-------~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------   64 (372)
T 1k8k_C            6 FLVEPISCHAWNK-------DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-------------   64 (372)
T ss_dssp             SCSSCCCEEEECT-------TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-------------
T ss_pred             ccCCCeEEEEECC-------CCCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC-------------
Confidence            3677888888863       367888886665 99999964 44  556677889999999999742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIV  205 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~--~~L  205 (787)
                      .+|++.+.                                 +++|++||+++++....+.   +...|.++++++  ++|
T Consensus        65 ~~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  111 (372)
T 1k8k_C           65 NRIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF  111 (372)
T ss_dssp             TEEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEE
T ss_pred             CEEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEE
Confidence            26655331                                 2589999999998776664   456899999987  577


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      +++. ++.|++||+.+.+....+.....+.   .      .....++++|  ++|+                        
T Consensus       112 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~------~~i~~~~~~~~~~~l~------------------------  158 (372)
T 1k8k_C          112 AVGSGSRVISICYFEQENDWWVCKHIKKPI---R------STVLSLDWHPNSVLLA------------------------  158 (372)
T ss_dssp             EEEETTSSEEEEEEETTTTEEEEEEECTTC---C------SCEEEEEECTTSSEEE------------------------
T ss_pred             EEEeCCCEEEEEEecCCCcceeeeeeeccc---C------CCeeEEEEcCCCCEEE------------------------
Confidence            7766 5679999988776432222111100   0      0022333333  2222                        


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC------
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF------  356 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl------  356 (787)
                                                                                   .+..+|.|++||+      
T Consensus       159 -------------------------------------------------------------~~~~dg~i~~~d~~~~~~~  177 (372)
T 1k8k_C          159 -------------------------------------------------------------AGSCDFKCRIFSAYIKEVE  177 (372)
T ss_dssp             -------------------------------------------------------------EEETTSCEEEEECCCTTTS
T ss_pred             -------------------------------------------------------------EEcCCCCEEEEEccccccc
Confidence                                                                         2345677777774      


Q ss_pred             ------------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          357 ------------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       357 ------------~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                                  ..++.+..+.+|..+|.+++|+|+|++|++++.|| .|++||+..       +          ..+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~-------~----------~~~~~  239 (372)
T 1k8k_C          178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVAT  239 (372)
T ss_dssp             CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEE
T ss_pred             ccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------ceeEE
Confidence                        46788899999999999999999999999999966 599999854       2          35666


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +..  +...|.+++|+||+++|+++ .|++|+||++..
T Consensus       240 ~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          240 LAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             Ecc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            652  34579999999999999888 899999999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=5.1e-19  Score=195.89  Aligned_cols=275  Identities=15%  Similarity=0.133  Sum_probs=194.6

Q ss_pred             CCCCCCcE-EEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQV-TWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v-~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|.+.| ....||         ++.|++|..+| ++|||+. .+++...+..|.++|.++.+.+             +
T Consensus       114 l~~h~~~v~~~~~~~---------g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-------------~  170 (445)
T 2ovr_B          114 LKGHDDHVITCLQFC---------GNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD-------------N  170 (445)
T ss_dssp             EECSTTSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET-------------T
T ss_pred             ecccCCCcEEEEEEc---------CCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC-------------C
Confidence            35677764 444454         35777777776 9999996 4667778889999999998762             2


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVG  208 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~  208 (787)
                        +|++.+.                                 +++|++||+.+++.+.++..+ ..|.++.++++.|+++
T Consensus       171 --~l~s~~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~  215 (445)
T 2ovr_B          171 --IIISGST---------------------------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG  215 (445)
T ss_dssp             --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred             --EEEEEeC---------------------------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEE
Confidence              5654221                                 258999999999999999754 5899999999888876


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      . ++.|++||+.+++.+.++..|..+             ...+++..++|+.++.+..+     ..|+..+.        
T Consensus       216 s~dg~i~~wd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~dg~i-----~iwd~~~~--------  269 (445)
T 2ovr_B          216 SRDATLRVWDIETGQCLHVLMGHVAA-------------VRCVQYDGRRVVSGAYDFMV-----KVWDPETE--------  269 (445)
T ss_dssp             ETTSEEEEEESSSCCEEEEEECCSSC-------------EEEEEECSSCEEEEETTSCE-----EEEEGGGT--------
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCccc-------------EEEEEECCCEEEEEcCCCEE-----EEEECCCC--------
Confidence            6 568999999999999888876553             34566666788887654211     12222111        


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a  367 (787)
                          ..+                +++..+.      +....+.+      .+..++.+..||.|++||+.+++.+..+.+
T Consensus       270 ----~~~----------------~~~~~~~------~~v~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          270 ----TCL----------------HTLQGHT------NRVYSLQF------DGIHVVSGSLDTSIRVWDVETGNCIHTLTG  317 (445)
T ss_dssp             ----EEE----------------EEECCCS------SCEEEEEE------CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ----cEe----------------EEecCCC------CceEEEEE------CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence                000                1111000      00011111      112245677899999999999999999999


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEE
Q 003907          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWI  446 (787)
Q Consensus       368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~L  446 (787)
                      |...+.+++++  +.+|++++.||. |++||+..       +          ..+..+... .+...|.+++|+  +++|
T Consensus       318 ~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~~l  375 (445)
T 2ovr_B          318 HQSLTSGMELK--DNILVSGNADST-VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KNFV  375 (445)
T ss_dssp             CCSCEEEEEEE--TTEEEEEETTSC-EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred             CcccEEEEEEe--CCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence            99999998884  679999999776 99999854       2          356666431 134579999995  6899


Q ss_pred             EEEeCCCeEEEEeCCCCC
Q 003907          447 AIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       447 As~S~dgTVhIwdl~~~g  464 (787)
                      ++++.||+|+|||+....
T Consensus       376 ~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEEETTSEEEEEETTTCC
T ss_pred             EEEeCCCeEEEEECCCCc
Confidence            999999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.9e-19  Score=193.95  Aligned_cols=290  Identities=11%  Similarity=0.063  Sum_probs=183.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc----cCCCc-----eeEeeee----------ccCcEEEEEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV----EDASN-----FNELVSK----------RDGPVSFLQM  113 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~-vL~lG~~~G-~qVWdv----~~~~~-----~~ells~----------~dg~V~~v~~  113 (787)
                      |.+.|..+.|..       +++ +|++|..+| ++|||+    +....     ....+..          |.++|.++++
T Consensus        44 ~~~~v~~~~~s~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (425)
T 1r5m_A           44 KLDNIVSSTWNP-------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW  116 (425)
T ss_dssp             ECSCCSEEEECS-------SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred             ccCceEEEEECC-------CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence            345666777753       355 888888876 999999    54331     2233333          5779999999


Q ss_pred             ecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C
Q 003907          114 QPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R  192 (787)
Q Consensus       114 lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~  192 (787)
                      .|+.             .+|++.+.                                 .++|++|| .+++.+..+.. .
T Consensus       117 s~~~-------------~~l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~  149 (425)
T 1r5m_A          117 SHDG-------------NSIVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHR  149 (425)
T ss_dssp             CTTS-------------SEEEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCC
T ss_pred             cCCC-------------CEEEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCC
Confidence            8742             26665321                                 25799999 67888888875 4


Q ss_pred             CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC--CCCccccccccceeEEcc-ceEEEecCCcee
Q 003907          193 SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA--GQGAVGINVGYGPMAVGP-RWLAYASNTLLL  266 (787)
Q Consensus       193 s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~--~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l  266 (787)
                      ..|.++++++  +.|+++. ++.|++||+.+++.+..+..+..+...  .............++++| ..++.++.+.. 
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  228 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA-  228 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGC-
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCe-
Confidence            6899999987  5666654 678999999999988877654332000  000000000023345555 34444443211 


Q ss_pred             cCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccC
Q 003907          267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD  346 (787)
Q Consensus       267 ~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~  346 (787)
                          ...|+..+..            ..                +.+..+      .+....+.++++.+    .++.+.
T Consensus       229 ----i~~~d~~~~~------------~~----------------~~~~~~------~~~i~~~~~~~~~~----~l~~~~  266 (425)
T 1r5m_A          229 ----IFVYQITEKT------------PT----------------GKLIGH------HGPISVLEFNDTNK----LLLSAS  266 (425)
T ss_dssp             ----EEEEETTCSS------------CS----------------EEECCC------SSCEEEEEEETTTT----EEEEEE
T ss_pred             ----EEEEEcCCCc------------ee----------------eeeccC------CCceEEEEECCCCC----EEEEEc
Confidence                1112211110            00                000000      00011122222222    245667


Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+|.|++||+.+++.+..+.+|..+|.+++|+|+| +|++++.+| .|+|||+..       +          ..+..+.
T Consensus       267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~~  327 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ-------N----------TLLALSI  327 (425)
T ss_dssp             TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTT-------T----------EEEEEEE
T ss_pred             CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCC-------C----------cEeEecc
Confidence            89999999999999999999999999999999999 999999966 599999854       2          3555554


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       + +...|.+++|+||+++|++++.||+|+||++..
T Consensus       328 -~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          328 -V-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -C-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             -c-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence             2 335799999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=3e-20  Score=203.55  Aligned_cols=259  Identities=10%  Similarity=0.118  Sum_probs=169.3

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------eeEeeeecc------------CcEEEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL  111 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~----------~~ells~~d------------g~V~~v  111 (787)
                      +.+.|..+.|+.       +++.|++|..+| ++|||++....          +...+..|.            ++|..+
T Consensus        27 ~~~~V~~v~~s~-------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEFNH-------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEECS-------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEECC-------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence            568899999974       467899998887 99999975331          355667787            889999


Q ss_pred             EEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE----
Q 003907          112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH----  187 (787)
Q Consensus       112 ~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~----  187 (787)
                      ++.|+.           +..+|++.+.                                 +++|++||+.+++...    
T Consensus       100 ~~~~~~-----------~~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~  135 (447)
T 3dw8_B          100 RWLPQK-----------NAAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN  135 (447)
T ss_dssp             EECCCC-----------SSSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred             EEcCCC-----------CcceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence            999752           1135654332                                 2589999998755421    


Q ss_pred             -----------------------------------EE--eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCc-eeEEE
Q 003907          188 -----------------------------------VL--RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE-NKFSV  227 (787)
Q Consensus       188 -----------------------------------tL--~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e-~l~tl  227 (787)
                                                         .+  .+...|.++++++  ++|+++.++.|++||+.+.. .+..+
T Consensus       136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~  215 (447)
T 3dw8_B          136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV  215 (447)
T ss_dssp             CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred             ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence                                               22  2446899999987  68888877789999998443 33322


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~  307 (787)
                      ...+.. ...+     ......++++|                                  .+..               
T Consensus       216 ~~~~~~-~~~~-----~~~v~~~~~~p----------------------------------~~~~---------------  240 (447)
T 3dw8_B          216 DIKPAN-MEEL-----TEVITAAEFHP----------------------------------NSCN---------------  240 (447)
T ss_dssp             ECCCSS-GGGC-----CCCEEEEEECS----------------------------------SCTT---------------
T ss_pred             eccccc-cccc-----CcceEEEEECC----------------------------------CCCc---------------
Confidence            211110 0000     00011122211                                  0000               


Q ss_pred             ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCC------------C
Q 003907          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P  371 (787)
Q Consensus       308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~----v~~~~aH~~------------p  371 (787)
                                                       .++.+..||.|+|||+.+++.    +..+.+|..            +
T Consensus       241 ---------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          241 ---------------------------------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             ---------------------------------EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred             ---------------------------------EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence                                             123456789999999999886    788888886            9


Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI  437 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----------a---~I~sl  437 (787)
                      |.+++|+|+|++|++++. | .|+|||+...      +          ..+..+. ++..           .   .+..+
T Consensus       288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~  348 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC  348 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred             EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence            999999999999999998 6 5999998531      1          1222222 1110           0   13459


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                      +|+||+++|++++.||+|+|||+... ....+..|
T Consensus       349 ~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~  382 (447)
T 3dw8_B          349 CWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS  382 (447)
T ss_dssp             EECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred             EECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence            99999999999999999999999864 33344444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.2e-20  Score=214.01  Aligned_cols=289  Identities=14%  Similarity=0.066  Sum_probs=174.5

Q ss_pred             eEEEEEecCc-EEEEEccCCCcee----EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907           76 QVLLLGYQNG-FQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (787)
Q Consensus        76 ~vL~lG~~~G-~qVWdv~~~~~~~----ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~  150 (787)
                      +.|+.|..+| ++|||++. +++.    ..+..|.+.|..|++.|...       +.+...+||.++.            
T Consensus       174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~------------  233 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ------------  233 (524)
T ss_dssp             --------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET------------
T ss_pred             hhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec------------
Confidence            3444454554 89999965 4332    33566778999999998632       1122347765432            


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeCC-CcEEEEEecC-CeEEEEe-CCeEEEE
Q 003907          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCF  216 (787)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------v~tL~f~-s~V~sV~~s~-~~LaV~~-~~~I~iw  216 (787)
                                           +++|+|||+.+++.           ..++..+ ..|.+++|++ ..|++|. ++.|++|
T Consensus       234 ---------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lW  292 (524)
T 2j04_B          234 ---------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF  292 (524)
T ss_dssp             ---------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             ---------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEE
Confidence                                 25899999987642           2355544 5899999976 6777765 5689999


Q ss_pred             ECCCCce-eEEEEecCCcccCCCCcccccccccee--EEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCC
Q 003907          217 DALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPM--AVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG  290 (787)
Q Consensus       217 D~~T~e~-l~tl~t~p~p~~~~~~~~~~~~~~~~l--Alsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~  290 (787)
                      |+.+++. ..++..|..+             ...+  +++|   .+||+++.+..     ...|+..++.          
T Consensus       293 D~~~~~~~~~~~~~H~~~-------------V~sv~~~~s~~g~~~laS~S~D~t-----vklWD~~~~~----------  344 (524)
T 2j04_B          293 DLTDPEVPSFYDQVHDSY-------------ILSVSTAYSDFEDTVVSTVAVDGY-----FYIFNPKDIA----------  344 (524)
T ss_dssp             ETTBCSSCSEEEECSSSC-------------EEEEEEECCTTSCCEEEEEETTSE-----EEEECGGGHH----------
T ss_pred             ECCCCCCceEEeeccccc-------------EEEEEEEcCCCCCeEEEEeccCCe-----EEEEECCCCC----------
Confidence            9998754 4456666553             2344  4455   47888876521     1123321110          


Q ss_pred             CceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC
Q 003907          291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS  370 (787)
Q Consensus       291 g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~  370 (787)
                                        ..+++.++.    ..+....+.++++.+    .++.++.|++|+|||+.++..+.++.+|.+
T Consensus       345 ------------------~~~~~~~~~----~~~~v~~v~fsp~~~----~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          345 ------------------TTKTTVSRF----RGSNLVPVVYCPQIY----SYIYSDGASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             ------------------HHCEEEEEC----SCCSCCCEEEETTTT----EEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred             ------------------ccccccccc----ccCcccceEeCCCcC----eEEEeCCCCcEEEEECcccccceeeecCCC
Confidence                              001111111    011122334444332    245667889999999999998889999999


Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC---------ccccCC------------------cceEEE
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH---------KYDWNS------------------SHVHLY  423 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~---------~~~~~~------------------s~~~l~  423 (787)
                      +|++|+|||+|++|||||.||+ |+|||+.........+..         ...+++                  ....+.
T Consensus       399 ~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~  477 (524)
T 2j04_B          399 TITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA  477 (524)
T ss_dssp             CEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred             ceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence            9999999999999999999665 999997432111000000         001111                  012233


Q ss_pred             EEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907          424 KLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                      .+. | +...|.+++||||+   .+||+|+.||+|+||++.-
T Consensus       478 ~l~-g-h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          478 KID-A-HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eec-C-CCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            332 3 23569999999995   4999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=1.8e-19  Score=224.31  Aligned_cols=353  Identities=13%  Similarity=0.082  Sum_probs=207.2

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+|.+.|..+.|..     ...+.+|++|..+| ++|||+.. +++...+..|.++|.++.+.|+.             .
T Consensus       696 ~~~~~~v~~~~~~~-----~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~-------------~  756 (1249)
T 3sfz_A          696 DEHSEQVNCCHFTN-----KSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDD-------------E  756 (1249)
T ss_dssp             ECCSSCEEEEEECS-----SSSCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSST-------------T
T ss_pred             cCCCCcEEEEEEec-----CCCceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCC-------------C
Confidence            45677788888753     22456888888877 99999964 66777888899999999998752             2


Q ss_pred             EEEEEEcCCCCCCCC---CCC-----------------cCCCCCcccCCcCCCCCCC--CCCCCEEEEEECCCCeEEEEE
Q 003907          132 FLLVVAGEDTNTLAP---GQN-----------------RSHLGGVRDGMMDSQSGNC--VNSPTAVRFYSFQSHCYEHVL  189 (787)
Q Consensus       132 LLavV~~d~~~~~~~---~~~-----------------~~~~~~~r~g~~~~~~~~~--~~~p~tVrlWdlktg~~v~tL  189 (787)
                      +|++++.|+....=+   .+.                 .+....+..-.+.+. +..  ....+.|.+||+.++..+..+
T Consensus       757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~~~v~~~d~~~~~~~~~~  835 (1249)
T 3sfz_A          757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD-GDKIIVAAKNKVLLFDIHTSGLLAEI  835 (1249)
T ss_dssp             EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT-SSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC-CCEEEEEcCCcEEEEEecCCCceeEE
Confidence            565544332110000   000                 000000000011110 000  113478999999999988888


Q ss_pred             e--CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 003907          190 R--FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN  262 (787)
Q Consensus       190 ~--f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~  262 (787)
                      .  +...|..+++++  ++++++. ++.|++||+.+++.+.++..|..+             ...++++|  ++|++++.
T Consensus       836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW-------------VHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET
T ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc-------------eEEEEECCCCCEEEEEeC
Confidence            5  346899999987  6777765 457999999999888887766553             34566666  56666554


Q ss_pred             Cc--eecCcce---------------------------------eccccCC-------C-CCcCCCcCCCCCceeEeeeh
Q 003907          263 TL--LLSNSGR---------------------------------LSPQNLT-------P-SGVSPSTSPGGSSLVARYAM  299 (787)
Q Consensus       263 ~~--~l~~~g~---------------------------------~s~q~lt-------~-~~~s~s~sp~~g~lva~~a~  299 (787)
                      +.  .+++...                                 ..+...+       . ......++|.+..+++ ...
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~-g~~  981 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF-GDE  981 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE-EET
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE-EcC
Confidence            32  1121000                                 0000000       0 0001112222222111 111


Q ss_pred             hhhhhh---hccc-ceeecccccc-----cCCCC------------------------------CCCCcccCCccccccc
Q 003907          300 EHSKQF---AAGL-SKTLSKYCQE-----LLPDG------------------------------SSSPVSPNSVWKVGRH  340 (787)
Q Consensus       300 d~sk~l---a~G~-~ktls~~~~~-----l~p~~------------------------------s~~~~s~s~~~~~~~~  340 (787)
                      +....+   ..+. ...+..+...     +.|++                              ......++++.     
T Consensus       982 ~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~----- 1056 (1249)
T 3sfz_A          982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS----- 1056 (1249)
T ss_dssp             TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-----
T ss_pred             CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-----
Confidence            110000   0000 0000000000     00110                              01111122211     


Q ss_pred             cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      .+..+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+..       +          .
T Consensus      1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~-v~iwd~~~-------~----------~ 1118 (1249)
T 3sfz_A         1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDL-------L----------S 1118 (1249)
T ss_dssp             EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC-CCEECSSS-------S----------S
T ss_pred             cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc-EEEEECCC-------c----------c
Confidence            1345678999999999999999999999999999999999999999999776 99999854       2          1


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      .+..+. + +...|.+++|||||++||+++.||+|+|||+....
T Consensus      1119 ~~~~l~-~-h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1119 PLHELK-G-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp             CSBCCC-C-CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred             eeeeec-c-CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            223332 3 34569999999999999999999999999998644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=1.2e-19  Score=206.50  Aligned_cols=321  Identities=11%  Similarity=0.036  Sum_probs=198.3

Q ss_pred             CCCC---cEEEEEEeeccCCCCCC-CeEEEEEecCc-EEEEEccCCCceeEee-e---eccCcEEEEEEecCCCCCCCCC
Q 003907           54 DLKD---QVTWAGFDRLEYGPSVF-KQVLLLGYQNG-FQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        54 ~~~~---~v~wa~Fd~l~~~~~~~-~~vL~lG~~~G-~qVWdv~~~~~~~ell-s---~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      .|.+   .|..+.|..       + ++.|++|..+| ++|||+.. ++....+ .   .|.++|..+.+. +.       
T Consensus       201 ~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~-------  264 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSP-------DSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS-------  264 (615)
T ss_dssp             SSSCTTCCEEEEEECS-------TTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS-------
T ss_pred             ccCCCCceEEEEEECC-------CCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CC-------
Confidence            4556   788888863       3 56788777765 99999965 5555555 5   788999999876 31       


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CcEEEEE
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVR  199 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-----s~V~sV~  199 (787)
                            .+|++.+.                                 +++|++||+++++.+.++..+     ..+..+.
T Consensus       265 ------~~l~~~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          265 ------QKFATVGA---------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  305 (615)
T ss_dssp             ------SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             ------CEEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence                  25654321                                 258999999999999999876     5677777


Q ss_pred             e-cCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCc--eecCcceeccc
Q 003907          200 C-SPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTL--LLSNSGRLSPQ  275 (787)
Q Consensus       200 ~-s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~--~l~~~g~~s~q  275 (787)
                      + +.+.|+++. ++.|++||+.+++.+.++..|..+             ...+++ |. |+.++.+.  .+++...+. .
T Consensus       306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~-~  369 (615)
T 1pgu_A          306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMH-Q  369 (615)
T ss_dssp             EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEE-C
T ss_pred             eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhc-C
Confidence            7 446677655 568999999998888887766543             234555 55 55554432  122211000 0


Q ss_pred             cCCCCCcCCCcCCCCCceeEeeehhhhhhhh---cc---------------------cceee------cccccc-cCCCC
Q 003907          276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFA---AG---------------------LSKTL------SKYCQE-LLPDG  324 (787)
Q Consensus       276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la---~G---------------------~~ktl------s~~~~~-l~p~~  324 (787)
                      ..........+ +.+..+++ ...|....+.   .+                     ..+.+      .+.... +....
T Consensus       370 ~~~~~v~~~~~-~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (615)
T 1pgu_A          370 DHSNLIVSLDN-SKAQEYSS-ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS  447 (615)
T ss_dssp             CCCSCEEEEEC-CSTTCCEE-EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccCceEEEEE-CCCcEEEE-EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence            00001111111 11111111 1111110000   00                     00000      000000 00000


Q ss_pred             CCCCcccCCccccccccccccCC-CceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~-dG~V~IwDl~s~~~v-~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                      ....+.++      +..++.+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|+|++||+++.||. |+|||+.. 
T Consensus       448 ~~~~~~~~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~-  519 (615)
T 1pgu_A          448 PGSAVSLS------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-  519 (615)
T ss_dssp             CEEEEEEC------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-
T ss_pred             CceEEEEc------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-
Confidence            01111111      123445667 999999999988766 778899999999999999999999999776 99999954 


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCeEEEEeCCCCC-Ccccccc
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPFG-GDSGFQT  471 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp----------Dg~~LAs~S~dgTVhIwdl~~~g-g~~~~~~  471 (787)
                            +          ..+..+. +.+...|.+++|+|          |+++||+++.||+|+||++...+ ....+..
T Consensus       520 ------~----------~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  582 (615)
T 1pgu_A          520 ------R----------EVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA  582 (615)
T ss_dssp             ------T----------EEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred             ------C----------cceeEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence                  2          3444443 32456799999999          99999999999999999998753 2333455


Q ss_pred             c
Q 003907          472 L  472 (787)
Q Consensus       472 H  472 (787)
                      |
T Consensus       583 h  583 (615)
T 1pgu_A          583 H  583 (615)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.86  E-value=8.1e-20  Score=202.32  Aligned_cols=241  Identities=14%  Similarity=0.157  Sum_probs=174.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.||         ++.|++|..+| ++|||++. +++...+..|.++|.++.+.+             . 
T Consensus       169 ~~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~-------------~-  224 (435)
T 1p22_A          169 LTGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN-------------G-  224 (435)
T ss_dssp             ECCCSSCEEEEECC---------SSEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT-------------T-
T ss_pred             EcCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC-------------C-
Confidence            34577888888874         35788888876 99999964 667777888899999998753             2 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEe-CCCcEEEEEecCCeEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLR-FRSSVCMVRCSPRIVA  206 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~-f~s~V~sV~~s~~~La  206 (787)
                       +|++.+.                                 +++|++||+++++.+   ..+. +...|.++.++.+.|+
T Consensus       225 -~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  270 (435)
T 1p22_A          225 -MMVTCSK---------------------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  270 (435)
T ss_dssp             -EEEEEET---------------------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             -EEEEeeC---------------------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence             5554221                                 258999999988765   4444 3468999999998888


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      ++. ++.|++||+.+++.+.++..|..+             ...+++.+++|                            
T Consensus       271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l----------------------------  309 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLV----------------------------  309 (435)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEE----------------------------
T ss_pred             EEeCCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEE----------------------------
Confidence            876 567999999999988888765442             11222211111                            


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                                                                               +.+..||.|+|||+.+++.+..+
T Consensus       310 ---------------------------------------------------------~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          310 ---------------------------------------------------------VSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             ---------------------------------------------------------EEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------------------------EEEeCCCeEEEEECCCCCEEEEE
Confidence                                                                     12346889999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      .+|..+|.+++|  +|.+|++++.||. |+|||+......   .     .......+..+. + +...|.+++|  |+++
T Consensus       333 ~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~~-~-h~~~v~~l~~--~~~~  397 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTLV-E-HSGRVFRLQF--DEFQ  397 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEEC-C-CSSCCCCEEE--CSSC
T ss_pred             eCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeecc-C-CCCCeEEEEe--CCCE
Confidence            999999999999  7899999999776 999998531000   0     000012455553 3 3457999999  8899


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 003907          446 IAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       446 LAs~S~dgTVhIwdl~~~  463 (787)
                      |++++.||+|+|||+...
T Consensus       398 l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          398 IVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEECCSSSEEEEEC----
T ss_pred             EEEEeCCCEEEEEECCCC
Confidence            999999999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.86  E-value=4.5e-20  Score=200.88  Aligned_cols=176  Identities=13%  Similarity=0.130  Sum_probs=134.8

Q ss_pred             CEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|++||+++++.+..+. +...|.++++++  ++|+++. ++.|++||+.+++.+.++..|..+             ..
T Consensus       119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-------------v~  185 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT-------------VT  185 (420)
T ss_dssp             SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC-------------EE
T ss_pred             CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc-------------EE
Confidence            589999999999988874 557999999987  5777765 568999999999988888766543             23


Q ss_pred             eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      .++++|  ++|+                                                                    
T Consensus       186 ~~~~~~~~~~l~--------------------------------------------------------------------  197 (420)
T 3vl1_A          186 DIAIIDRGRNVL--------------------------------------------------------------------  197 (420)
T ss_dssp             EEEEETTTTEEE--------------------------------------------------------------------
T ss_pred             EEEEcCCCCEEE--------------------------------------------------------------------
Confidence            344433  1222                                                                    


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC------------------------CCCeEEEEECCCCC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------------------------TSPISALCFDPSGT  382 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH------------------------~~pIsaLaFSpdG~  382 (787)
                                       ++..||.|++||+.+++.+..+..|                        ..+|.+++|+|+|+
T Consensus       198 -----------------s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (420)
T 3vl1_A          198 -----------------SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK  260 (420)
T ss_dssp             -----------------EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred             -----------------EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence                             2345778888888888888887753                        34555566789999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCC
Q 003907          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~  461 (787)
                      +|++++.||. |+|||+..       +          ..+..+..+ +...|.+++|+||++ +|++++.||+|+|||+.
T Consensus       261 ~l~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          261 YVIAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             EEEEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999776 99999954       2          355555443 345799999999999 99999999999999998


Q ss_pred             CCCC
Q 003907          462 PFGG  465 (787)
Q Consensus       462 ~~gg  465 (787)
                      ....
T Consensus       322 ~~~~  325 (420)
T 3vl1_A          322 SPEC  325 (420)
T ss_dssp             CTTS
T ss_pred             CCcC
Confidence            7544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.85  E-value=7.2e-19  Score=218.98  Aligned_cols=291  Identities=14%  Similarity=0.065  Sum_probs=204.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      .+|++.|..+.|..       +++.|++|..+| ++|||+.. ++....+..|.++|.++++.|+.             .
T Consensus       612 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~-------------~  670 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDD-------------S  670 (1249)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred             ecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCC-------------C
Confidence            46888999999964       467888888877 99999964 56666778899999999999752             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----CeEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVA  206 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~----~~La  206 (787)
                      +||+.+.                                 +++|++||+.+++.+.++..+ ..|.+++|++    .+++
T Consensus       671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  717 (1249)
T 3sfz_A          671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA  717 (1249)
T ss_dssp             EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence            6665331                                 258999999999999999755 5899999976    3666


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcC
Q 003907          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      ++. ++.|++||+.+++.+.++..|..+             ...++++|  ++|++++.+..+     ..|+..+...  
T Consensus       718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v-----~vwd~~~~~~--  777 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTL-----RLWDVRSANE--  777 (1249)
T ss_dssp             EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEE-----EEEEGGGTEE--
T ss_pred             EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeE-----EEEeCCCCcc--
Confidence            655 567999999999998888876653             45688888  788888765211     1233211100  


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeeccccc-ccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ-ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~-~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                                .......          +.+..... ............++++++..    +. ..++.+.+||+.++..+
T Consensus       778 ----------~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l----~~-~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          778 ----------RKSINVK----------RFFLSSEDPPEDVEVIVKCCSWSADGDKI----IV-AAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             ----------EEEEECC----------CCC--------CCCCCBCCCCBCTTSSEE----EE-EETTEEEEEETTTCCEE
T ss_pred             ----------cceeccc----------ccccccCCccccccceEEEEEECCCCCEE----EE-EcCCcEEEEEecCCCce
Confidence                      0000000          00000000 00000012223344443322    22 23789999999999988


Q ss_pred             EEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          363 SQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       363 ~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      ..+. +|..+|.+++|+|+|+++++++.+|. |++||+..       +          ..+..+. + +...|.+++|+|
T Consensus       833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~sp  892 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDS-------R----------LKVADCR-G-HLSWVHGVMFSP  892 (1249)
T ss_dssp             EEEECSSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEECT
T ss_pred             eEEcCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCC-------C----------ceeeecC-C-CccceEEEEECC
Confidence            8876 89999999999999999999999776 99999854       2          4555554 4 345799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ||++|++++.|++|++|++..
T Consensus       893 dg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          893 DGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEEHHH
T ss_pred             CCCEEEEEeCCCeEEEEEccc
Confidence            999999999999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.85  E-value=6.6e-21  Score=204.75  Aligned_cols=238  Identities=13%  Similarity=0.106  Sum_probs=155.7

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      ++.|..+.|..       +++.|++|..+| ++|||++... .....+..|.++|.++++.|+.             .+|
T Consensus        11 ~~~v~~~~~s~-------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l   70 (377)
T 3dwl_C           11 PKPSYEHAFNS-------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRI   70 (377)
T ss_dssp             SSCCSCCEECS-------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCE
T ss_pred             CCcEEEEEECC-------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEE
Confidence            45566666753       467888886665 9999997532 5666778899999999999752             256


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe-CCCcEEEEEecC--CeEEE
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR-FRSSVCMVRCSP--RIVAV  207 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~-f~s~V~sV~~s~--~~LaV  207 (787)
                      +..+.                                 +++|++||+.+++   .+..+. +...|.++++++  ++|++
T Consensus        71 ~s~s~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  117 (377)
T 3dwl_C           71 VTCSQ---------------------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV  117 (377)
T ss_dssp             EEEET---------------------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE
T ss_pred             EEEeC---------------------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE
Confidence            55331                                 2589999999987   444443 456999999987  56666


Q ss_pred             Ee-CCeEEEEECCCCce---eEEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCC
Q 003907          208 GL-ATQIYCFDALTLEN---KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~---l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                      +. ++.|++||+.+.+.   ...+.. |..+             ...++++|  ++||++                    
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~~--------------------  164 (377)
T 3dwl_C          118 GSGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAAG--------------------  164 (377)
T ss_dssp             EESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEEE--------------------
T ss_pred             EecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEEE--------------------
Confidence            55 56899999988763   455544 3331             23445544  333333                    


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC---
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV---  357 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~---  357 (787)
                                                                                       ..||.|+|||+.   
T Consensus       165 -----------------------------------------------------------------~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          165 -----------------------------------------------------------------CADRKAYVLSAYVRD  179 (377)
T ss_dssp             -----------------------------------------------------------------ESSSCEEEEEECCSS
T ss_pred             -----------------------------------------------------------------eCCCEEEEEEEEecc
Confidence                                                                             345666666663   


Q ss_pred             ---------------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          358 ---------------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       358 ---------------s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                                     .++.+..+ +|..+|.+++|+|+|++||+++.|| .|+|||+..       +.      .....+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~-------~~------~~~~~~  244 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSA-------PE------QPPRAL  244 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECS-------TT------SCEEEC
T ss_pred             cCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCC-------CC------Ccceee
Confidence                           34567777 9999999999999999999999966 599999864       21      000113


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+. + +...|.+++|+|||++|+++++++.+ +|+...
T Consensus       245 ~~~~-~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          245 ITVK-L-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CCEE-C-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             Eeec-C-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            3443 2 34569999999999999999877766 777764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.2e-19  Score=184.93  Aligned_cols=245  Identities=11%  Similarity=0.173  Sum_probs=174.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|..       +++.|++|..+| ++|||+.. +++...+. +.++|..+.+.|+.             
T Consensus        70 ~~~h~~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~-------------  127 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDC-------FTKYCVTGSADYSIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCG-------------  127 (369)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTS-------------
T ss_pred             hhhcCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCC-CcEEEEee-cCCCeEEEEEccCC-------------
Confidence            345778888888863       356777777776 99999965 55555555 77899999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeC-CC--cEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRF-RS--SVC  196 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------v~tL~f-~s--~V~  196 (787)
                      .+|++...+.  .                          ..++.|++||+.+++.           +..+.. ..  .|.
T Consensus       128 ~~l~~~~~~~--~--------------------------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          128 NYFLAILDNV--M--------------------------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             SEEEEEECCB--T--------------------------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CEEEEecCCc--c--------------------------CCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            2565433210  0                          0236899999987642           222322 22  899


Q ss_pred             EEEecC--CeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907          197 MVRCSP--RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       197 sV~~s~--~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~  272 (787)
                      .+++++  +.|+++. ++.|++||+.+ .+.+..+..+..+             ...++++|       +.         
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~---------  230 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDMQFSP-------DL---------  230 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEEEECT-------TS---------
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEEEECC-------CC---------
Confidence            999987  5777765 56799999998 6666666654432             22333332       10         


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                        ..                                                 ++.+..+|.|+
T Consensus       231 ------------------~~-------------------------------------------------l~~~~~d~~i~  243 (369)
T 3zwl_B          231 ------------------TY-------------------------------------------------FITSSRDTNSF  243 (369)
T ss_dssp             ------------------SE-------------------------------------------------EEEEETTSEEE
T ss_pred             ------------------CE-------------------------------------------------EEEecCCceEE
Confidence                              00                                                 11234578999


Q ss_pred             EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-------------EEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          353 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       353 IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~-------------~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      +||+.+++.+..+. |..++.+++|+|+|++|++++.++.             .+++||+..       +          
T Consensus       244 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~----------  305 (369)
T 3zwl_B          244 LVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E----------  305 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C----------
T ss_pred             EEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C----------
Confidence            99999999988887 7789999999999999999998763             589999854       2          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+..+. + +...|.+++|+||+++|++++.||+|+||+++.
T Consensus       306 ~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          306 EEIGRVQ-G-HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEE-C-CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cchhhee-c-ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            3555554 3 345799999999999999999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.85  E-value=3e-19  Score=211.44  Aligned_cols=253  Identities=13%  Similarity=0.071  Sum_probs=189.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|.+.|..+.|..       +++.|++|..+| ++|||+.. +.....+..|.++|.++.+.|+             .
T Consensus         9 ~~~h~~~v~~i~~sp-------~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-------------~   67 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIAR-------------K   67 (814)
T ss_dssp             EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred             eecCCCceEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCC-------------C
Confidence            456888999999974       467888888877 99999954 6677788889999999999974             2


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV  207 (787)
                      .+|++.+.                                 +++|++||+.+++.+.++.. ...|.++++++  +.|++
T Consensus        68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence            36665321                                 25899999999999999985 46899999988  56777


Q ss_pred             Ee-CCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      +. ++.|++||+.+. +....+..|..+             ...++++|       .+                      
T Consensus       115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p-------~~----------------------  152 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD----------------------  152 (814)
T ss_dssp             EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEET-------TE----------------------
T ss_pred             EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEc-------CC----------------------
Confidence            66 458999999887 444445444432             12233322       00                      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                           +.                                                .++.+..+|.|++||+.+++....+
T Consensus       153 -----~~------------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             -----EE------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCcceeEE
Confidence                 00                                                0112346889999999988877777


Q ss_pred             ccCC-CCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          366 KAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       366 ~aH~-~pIsaLaFSp--dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                      ..|. .+|.+++|+|  +|.+|++++.+| .|++||+..       +          ..+..+. + +...|.+++|+||
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~  239 (814)
T 3mkq_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT  239 (814)
T ss_dssp             ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred             ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCC
Confidence            7655 8999999999  999999999966 599999854       2          3555554 3 3357999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      +++|++++.||+|++||+........+..|.
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence            9999999999999999998755444454443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.85  E-value=1.3e-18  Score=192.86  Aligned_cols=239  Identities=13%  Similarity=0.136  Sum_probs=177.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       .+ .|++|..+| ++|||++ .++....+..|.++|.++.+.|.|           ..
T Consensus       158 ~~~h~~~V~~l~~~~-------~~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~  217 (464)
T 3v7d_B          158 LSGHDGGVWALKYAH-------GG-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NI  217 (464)
T ss_dssp             ECCCSSCEEEEEECS-------TT-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SC
T ss_pred             EeCCCcCEEEEEEcC-------CC-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CC
Confidence            346888888888853       13 677777766 9999996 466777888899999999999643           22


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------------------EE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EH  187 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------------------v~  187 (787)
                      .+|++.+.                                 +++|++||+++++.                       +.
T Consensus       218 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
T 3v7d_B          218 KYIVTGSR---------------------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  264 (464)
T ss_dssp             EEEEEEET---------------------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred             CEEEEEcC---------------------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence            35554321                                 25899999998763                       44


Q ss_pred             EEeC-CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCce
Q 003907          188 VLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL  265 (787)
Q Consensus       188 tL~f-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~  265 (787)
                      .+.. ...|.++..+.++|+++. ++.|++||+.+++.+.++..|..+             ...++++|       +.  
T Consensus       265 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~--  322 (464)
T 3v7d_B          265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYSTIYDH-------ER--  322 (464)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEEET-------TT--
T ss_pred             EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEEEEEcC-------CC--
Confidence            4443 358889988888888876 567999999999988887665442             12233322       10  


Q ss_pred             ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccccc
Q 003907          266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM  345 (787)
Q Consensus       266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~  345 (787)
                                               .                                                 .++.+
T Consensus       323 -------------------------~-------------------------------------------------~l~sg  328 (464)
T 3v7d_B          323 -------------------------K-------------------------------------------------RCISA  328 (464)
T ss_dssp             -------------------------T-------------------------------------------------EEEEE
T ss_pred             -------------------------C-------------------------------------------------EEEEE
Confidence                                     0                                                 01134


Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..||.|+|||+.+++.+..+.+|..+|.+++|+  +.+|++++.||+ |+|||+..       +          .....+
T Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~-------~----------~~~~~~  388 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAND-------Y----------SRKFSY  388 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEE
T ss_pred             eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCC-------C----------ceeeee
Confidence            568999999999999999999999999999997  589999999765 99999854       2          244444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .   +...+..++|++|+++|++++ ||+|+|||+...
T Consensus       389 ~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          389 H---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             E---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             c---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            3   234577899999999999999 899999999863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.84  E-value=2.2e-19  Score=189.28  Aligned_cols=256  Identities=12%  Similarity=0.029  Sum_probs=170.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||++....  ....+..|.++|.++.+.|+            
T Consensus         7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------   67 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------   67 (342)
T ss_dssp             SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred             ccCCCCcEEEEEEcC-------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC------------
Confidence            457899999999985       255777777766 99999975431  12334478899999999974            


Q ss_pred             cCc-EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe---CCCcEEEEEecC-
Q 003907          129 LHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR---FRSSVCMVRCSP-  202 (787)
Q Consensus       129 srp-LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdl-ktg~~v~tL~---f~s~V~sV~~s~-  202 (787)
                       .. +|++.+.                                 +++|++||+ .+++. ..+.   +...|.++++++ 
T Consensus        68 -~~~~l~~~~~---------------------------------dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~  112 (342)
T 1yfq_A           68 -TDLQIYVGTV---------------------------------QGEILKVDLIGSPSF-QALTNNEANLGICRICKYGD  112 (342)
T ss_dssp             -SSEEEEEEET---------------------------------TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETT
T ss_pred             -CCcEEEEEcC---------------------------------CCeEEEEEeccCCce-EeccccCCCCceEEEEeCCC
Confidence             23 4544221                                 258999999 88876 4444   557999999985 


Q ss_pred             CeEEEEe-CCeEEEEECCC---------CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907          203 RIVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T---------~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~  272 (787)
                      +.|+++. ++.|++||+.+         ++.+.++. ++.+             ...++++|..                
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------------v~~~~~~~~~----------------  162 (342)
T 1yfq_A          113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------------IFTMDTNSSR----------------  162 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------------EEEEEECSSE----------------
T ss_pred             CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------------eEEEEecCCc----------------
Confidence            6677654 56899999876         33222111 1110             1112221111                


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                                                                           ++.+..+|.|+
T Consensus       163 ---------------------------------------------------------------------l~~~~~d~~i~  173 (342)
T 1yfq_A          163 ---------------------------------------------------------------------LIVGMNNSQVQ  173 (342)
T ss_dssp             ---------------------------------------------------------------------EEEEESTTEEE
T ss_pred             ---------------------------------------------------------------------EEEEeCCCeEE
Confidence                                                                                 12345688999


Q ss_pred             EEECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          353 VKDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       353 IwDl~s-~~--~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      +||+.+ +.  .......|..+|.+++|+| +|++|++++.+| .|+||++...      +..     .....+..+...
T Consensus       174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~------~~~-----~~~~~~~~~~~~  241 (342)
T 1yfq_A          174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQ------GDD-----YNSSKRFAFRCH  241 (342)
T ss_dssp             EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTT------CCS-----TTCTTCEEEECC
T ss_pred             EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCC------Ccc-----cccccceeeecc
Confidence            999988 44  3345567899999999999 999999999966 5999998542      000     000122333321


Q ss_pred             c-------ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          429 I-------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       429 ~-------~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                      .       +...|.+++|+||+++|++++.||+|+|||+........+..|
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            1       1237999999999999999999999999999865433334443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.84  E-value=7.4e-20  Score=198.83  Aligned_cols=113  Identities=11%  Similarity=0.115  Sum_probs=89.1

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +++.||+|+|||+.+++.+..+.+|..+|.+++|+|++ .+|+|++.|++ |+|||+..       +          ..+
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~  205 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRC-------P----------KPA  205 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTS-------S----------SCE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccc-cccccccc-------c----------cee
Confidence            34568999999999999999999999999999999998 48899999776 99999964       2          234


Q ss_pred             EEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          423 YKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                      .++....+...+.+++|+|+ +++||+++.||+|+|||+........+..|..
T Consensus       206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~  258 (344)
T 4gqb_B          206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ  258 (344)
T ss_dssp             EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred             eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence            44432223346899999985 57899999999999999987766667777754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.84  E-value=6.6e-19  Score=200.35  Aligned_cols=249  Identities=12%  Similarity=0.101  Sum_probs=185.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----ceeEeeeeccCc-EEEEEEec--CCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCE  124 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~----~~~ells~~dg~-V~~v~~lP--~P~~~~~~d  124 (787)
                      ...+++.|..+.|..       +++.|++|..+.++|||++. +    +....+..|.++ |.++++.|  +.       
T Consensus        14 ~~~~~~~v~~~~~sp-------dg~~l~~~~~~~v~v~~~~~-~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-------   78 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------   78 (615)
T ss_dssp             CCCCTTCCCCCEEET-------TTTEEEEEETTEEEEEECCS-SCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred             CCCccCceeEEEECC-------CCCEEEEecCCeEEEEECCC-CCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence            446788899888874       46788888877899999974 4    566778889999 99999997  42       


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCcE
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSV  195 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--------~~v~tL~-f~s~V  195 (787)
                            .+||+.+.                                 +++|++||+.++        +.+.++. +...|
T Consensus        79 ------~~l~s~~~---------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v  119 (615)
T 1pgu_A           79 ------QYLCSGDE---------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI  119 (615)
T ss_dssp             ------CEEEEEET---------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred             ------CEEEEecC---------------------------------CCEEEEEeCCCCcccccccccccchhhcccccE
Confidence                  26665221                                 258999999855        6777776 45699


Q ss_pred             EEEEecC--CeEEEEeCC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 003907          196 CMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN  268 (787)
Q Consensus       196 ~sV~~s~--~~LaV~~~~-----~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~  268 (787)
                      .++++++  ++|+++..+     .|++||  +++.+.++..|..+             ...++++|       +.     
T Consensus       120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-----  172 (615)
T 1pgu_A          120 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INACHLKQ-------SR-----  172 (615)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEEEEECS-------SS-----
T ss_pred             EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEEEEECC-------CC-----
Confidence            9999988  577776654     688888  56666665544432             12233322       10     


Q ss_pred             cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (787)
Q Consensus       269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d  348 (787)
                                            ..                                                .++.+..+
T Consensus       173 ----------------------~~------------------------------------------------~l~~~~~d  182 (615)
T 1pgu_A          173 ----------------------PM------------------------------------------------RSMTVGDD  182 (615)
T ss_dssp             ----------------------SC------------------------------------------------EEEEEETT
T ss_pred             ----------------------Cc------------------------------------------------EEEEEeCC
Confidence                                  00                                                01134568


Q ss_pred             ceEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          349 GIVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~---pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      |.|++||+.+++.+..+.+|..   +|.+++|+|+ |++|++++.||. |+|||+..       +          ..+..
T Consensus       183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~  244 (615)
T 1pgu_A          183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKY  244 (615)
T ss_dssp             TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred             CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEE
Confidence            9999999999999999999999   9999999999 999999999776 99999854       2          35555


Q ss_pred             Eec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907          425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (787)
Q Consensus       425 l~r---G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~  471 (787)
                      +..   + +...|.+++|+ |+++|++++.|++|++||+........+..
T Consensus       245 ~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          245 IEDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             CCBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             ecccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            533   3 44679999999 999999999999999999986543333333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.84  E-value=2.2e-19  Score=199.27  Aligned_cols=285  Identities=12%  Similarity=0.070  Sum_probs=180.3

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe--eeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el--ls~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .+.+.|+.+.|.-      ..+++|++|..+| ++|||++... ...+  +..|.++|.+|+|.|.          .+. 
T Consensus       117 ~~~~~V~~l~~~P------~~~~~lasGs~dg~i~lWd~~~~~-~~~~~~~~gH~~~V~~l~f~p~----------~~~-  178 (435)
T 4e54_B          117 PFDRRATSLAWHP------THPSTVAVGSKGGDIMLWNFGIKD-KPTFIKGIGAGGSITGLKFNPL----------NTN-  178 (435)
T ss_dssp             ECSSCEEEEEECS------SCTTCEEEEETTSCEEEECSSCCS-CCEEECCCSSSCCCCEEEECSS----------CTT-
T ss_pred             CCCCCEEEEEEeC------CCCCEEEEEeCCCEEEEEECCCCC-ceeEEEccCCCCCEEEEEEeCC----------CCC-
Confidence            4567799999962      2356899999887 9999996533 3333  4568899999999873          112 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIV  205 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~L  205 (787)
                       +|+.++                                 .+++|+|||++++........+   ..+.++++++  ++|
T Consensus       179 -~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (435)
T 4e54_B          179 -QFYASS---------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMV  224 (435)
T ss_dssp             -EEEEEC---------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred             -EEEEEe---------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEE
Confidence             554422                                 1368999999876654444332   2567888876  678


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCC
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      +++. ++.|++||+.+ +.+.++..|..+             ...++++|   .+||.++.+..     ...|+..+...
T Consensus       225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~  285 (435)
T 4e54_B          225 VTGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRG  285 (435)
T ss_dssp             EEECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCS
T ss_pred             EEEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcce-----eeEEecccccc
Confidence            8765 46799999864 455666555543             35678887   46777765421     11233222110


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                      .....                         ....+      ......+.++++++    .+++++.||.|+|||+.++..
T Consensus       286 ~~~~~-------------------------~~~~h------~~~v~~~~~spdg~----~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          286 KASFL-------------------------YSLPH------RHPVNAACFSPDGA----RLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             SSCCS-------------------------BCCBC------SSCEEECCBCTTSS----EEEEEESSSCEEEEESSSSSS
T ss_pred             cceEE-------------------------Eeeec------cccccceeECCCCC----eeEEEcCCCEEEEEECCCCcc
Confidence            00000                         00000      01112233344332    355778999999999999988


Q ss_pred             EEEeccCCC------CeEEEEECCCCCEEEEEEc-----------CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          362 ISQFKAHTS------PISALCFDPSGTLLVTASV-----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       362 v~~~~aH~~------pIsaLaFSpdG~lLATaS~-----------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      ...+..|..      .+...+|+|++.++++++.           +++.|+|||+..       |          ..+..
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~~~~  393 (435)
T 4e54_B          331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KMMCQ  393 (435)
T ss_dssp             EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CEEEE
T ss_pred             ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cEEEE
Confidence            888877653      2334567777777776643           345699999854       3          46666


Q ss_pred             EecccccccEEEE-EEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          425 LHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       425 l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      +..++ ...|.++ +|||||++||+++ |++|+||++++.
T Consensus       394 l~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          394 LYDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             ECCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             EeCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            65443 3457776 6999999999886 789999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.84  E-value=3e-19  Score=195.13  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=162.5

Q ss_pred             EEEEEecCc-EEEEEccCCCce---eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           77 VLLLGYQNG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        77 vL~lG~~~G-~qVWdv~~~~~~---~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      +++.|+.+| ++|||++..+..   ...+..|.++|.++++.|.          .+  .+|++.+.              
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----------~~--~~l~s~s~--------------  102 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----------ND--NVIASGSE--------------  102 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----------CT--TEEEEEET--------------
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----------CC--CEEEEEeC--------------
Confidence            444456555 999999765433   3356778999999999872          12  26665321              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeC-CCcEEEEEecC---CeEEEEe-CCeEEEEECCC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRF-RSSVCMVRCSP---RIVAVGL-ATQIYCFDALT  220 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-------~~v~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T  220 (787)
                                         +++|+|||+.++       +.+.++.. ...|.+|++++   ++|+++. ++.|++||+.+
T Consensus       103 -------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A          103 -------------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             -------------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred             -------------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence                               268999999998       66778875 46899999987   3677655 56799999999


Q ss_pred             CceeEEE--EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907          221 LENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (787)
Q Consensus       221 ~e~l~tl--~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a  298 (787)
                      ++.+.++  ..|..+             ...++++|       +.                           .       
T Consensus       164 ~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~---------------------------~-------  189 (402)
T 2aq5_A          164 GAAVLTLGPDVHPDT-------------IYSVDWSR-------DG---------------------------A-------  189 (402)
T ss_dssp             TEEEEEECTTTCCSC-------------EEEEEECT-------TS---------------------------S-------
T ss_pred             CCccEEEecCCCCCc-------------eEEEEECC-------CC---------------------------C-------
Confidence            9887777  334331             12233322       10                           0       


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCC-eEEEE
Q 003907          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISALC  376 (787)
Q Consensus       299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-~aH~~p-IsaLa  376 (787)
                                                                .++.+..||.|+|||+.+++.+..+ .+|.+. +.+++
T Consensus       190 ------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          190 ------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             ------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred             ------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence                                                      0123356899999999999999999 799876 99999


Q ss_pred             ECCCCCEEEEE---EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCC
Q 003907          377 FDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSK  452 (787)
Q Consensus       377 FSpdG~lLATa---S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~d  452 (787)
                      |+|+|++|+++   +.++ .|+|||+...       .       .......+  + +...|.+++|+||+++|+++ +.|
T Consensus       228 ~~~~~~~l~~g~~~~~d~-~i~iwd~~~~-------~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          228 FVSEGKILTTGFSRMSER-QVALWDTKHL-------E-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             ECSTTEEEEEEECTTCCE-EEEEEETTBC-------S-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTC
T ss_pred             EcCCCcEEEEeccCCCCc-eEEEEcCccc-------c-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCC
Confidence            99999999999   5645 5999998541       0       00122222  1 23458999999999999754 579


Q ss_pred             CeEEEEeCCCCC
Q 003907          453 GTCHVFVLSPFG  464 (787)
Q Consensus       453 gTVhIwdl~~~g  464 (787)
                      ++|+||++....
T Consensus       290 g~i~i~d~~~~~  301 (402)
T 2aq5_A          290 SSIRYFEITSEA  301 (402)
T ss_dssp             SCEEEEEECSST
T ss_pred             CeEEEEEecCCC
Confidence            999999998654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=9.8e-19  Score=213.67  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=83.3

Q ss_pred             cccccCCCceEEEEECCCCcEE----E--Eec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----
Q 003907          341 AGADMDNAGIVVVKDFVTRAII----S--QFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----  405 (787)
Q Consensus       341 ~~~s~~~dG~V~IwDl~s~~~v----~--~~~-----aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~----  405 (787)
                      .+++++.||+|++||+.++...    .  .+.     +|...|.+|+|+|||++||+|+.||+ |+|||+......    
T Consensus       449 ~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          449 AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC-----
T ss_pred             EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccc
Confidence            4568899999999999876421    1  122     89999999999999999999999876 999998542000    


Q ss_pred             -CCCCCCcc-----------------------ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          406 -SGSGNHKY-----------------------DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       406 -~~~g~~~~-----------------------~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                       +.......                       .+....+++..+. + +.+.|++|+||||| +||+|+.|++|+|||+.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~  604 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-A-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR  604 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-C-CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-c-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence             00000000                       0000113355554 3 45679999999999 99999999999999986


Q ss_pred             C
Q 003907          462 P  462 (787)
Q Consensus       462 ~  462 (787)
                      .
T Consensus       605 ~  605 (902)
T 2oaj_A          605 G  605 (902)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.7e-19  Score=212.68  Aligned_cols=264  Identities=11%  Similarity=0.111  Sum_probs=178.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|+.       +++.|++|..+| ++|||++. .+.....+..|.++|.++.+.|++           .
T Consensus         5 l~gH~~~V~~l~~s~-------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~   66 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   66 (753)
T ss_dssp             ---CCCCEEEECCCS-------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred             cccCcceeEEEEECC-------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence            467899999999974       356788887776 99999963 234556677899999999998642           1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR---  203 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~~---  203 (787)
                      ..+|++++.                                 +++|++||+.+++  .+..+. +...|.++++++.   
T Consensus        67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~  113 (753)
T 3jro_A           67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  113 (753)
T ss_dssp             CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence            236655332                                 2589999999997  566665 3469999999864   


Q ss_pred             -eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907          204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (787)
Q Consensus       204 -~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~  279 (787)
                       .|+++. ++.|++||+.+...  ...+..++.+             ...++++|..+...+..                
T Consensus       114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~~l~~~p~~~~~~~~~----------------  164 (753)
T 3jro_A          114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH----------------  164 (753)
T ss_dssp             SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred             CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eEEEEecCccccccccc----------------
Confidence             677655 56899999988743  2333333321             22333332111110000                


Q ss_pred             CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (787)
Q Consensus       280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~  359 (787)
                                                                        .    ....+..++.+..||.|++||+.++
T Consensus       165 --------------------------------------------------~----~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          165 --------------------------------------------------N----GTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             --------------------------------------------------------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             --------------------------------------------------c----cCCCCCEEEEEECCCeEEEEeccCC
Confidence                                                              0    0000112345677999999999876


Q ss_pred             ----cEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       360 ----~~v~~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                          ..+..+.+|..+|.+++|+|+   |++|++++.||. |+|||+....     +.       ....+..  ...+..
T Consensus       191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~-------~~~~~~~--~~~~~~  255 (753)
T 3jro_A          191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP-------WKKTLLK--EEKFPD  255 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC-------CBCCBSS--SSCCSS
T ss_pred             cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc-------ceeEEec--cCCCCC
Confidence                567788999999999999999   999999999776 9999985420     00       0001111  111335


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      .|++++|+|||++|++++.||+|+||++...+
T Consensus       256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            69999999999999999999999999998643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.83  E-value=1.4e-18  Score=192.87  Aligned_cols=242  Identities=12%  Similarity=0.146  Sum_probs=163.2

Q ss_pred             CeEEEEEecCc-EEEEEccCC---------CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL  144 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~---------~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~  144 (787)
                      +.+|++|..+| ++|||+...         ......+..|.+.|.+|.+.|..            ..+|++ ++      
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~~l~s-~~------  201 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL------------NGYLLS-AS------  201 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS------------TTEEEE-EC------
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC------------CCeEEE-Ee------
Confidence            57899998877 999999752         34455667888999999998741            115543 21      


Q ss_pred             CCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-------EEEEe-CCCcEEEEEecC---CeEEEEe-CCe
Q 003907          145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVLR-FRSSVCMVRCSP---RIVAVGL-ATQ  212 (787)
Q Consensus       145 ~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-------v~tL~-f~s~V~sV~~s~---~~LaV~~-~~~  212 (787)
                                                .+++|++||+.++..       ...+. +...|.+|++++   ++|+++. ++.
T Consensus       202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence                                      125899999987422       33443 345899999976   5777665 678


Q ss_pred             EEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907          213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (787)
Q Consensus       213 I~iwD~~T~---e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~  289 (787)
                      |++||+.+.   +.+..+..|..+             ...++++|       ..                          
T Consensus       256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v~~i~~~p-------~~--------------------------  289 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSHTVDAHTAE-------------VNCLSFNP-------YS--------------------------  289 (430)
T ss_dssp             EEEEETTCSCSSSCSEEEECCSSC-------------EEEEEECS-------SC--------------------------
T ss_pred             EEEEECCCCCCCcceeEeecCCCC-------------eEEEEeCC-------CC--------------------------
Confidence            999999987   344555443321             12233322       10                          


Q ss_pred             CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEEEeccC
Q 003907          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH  368 (787)
Q Consensus       290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH  368 (787)
                       ..                                                .++.+..+|.|+|||+.+ ...+..+.+|
T Consensus       290 -~~------------------------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          290 -EF------------------------------------------------ILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             -TT------------------------------------------------EEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             -CC------------------------------------------------EEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence             00                                                012345689999999998 5678899999


Q ss_pred             CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EE
Q 003907          369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WI  446 (787)
Q Consensus       369 ~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~L  446 (787)
                      ..+|.+|+|+|+|. +||+++.||. |+|||+......   ......-......++.+ .| +...|.+++|+|+++ +|
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~~~l  394 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE---QSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEPWII  394 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC---CCHHHHHHCCTTEEEEC-CC-CSSCEEEEEECSSSTTEE
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc---cCccccccCCcceEEEc-CC-CCCCceEEEECCCCCCEE
Confidence            99999999999995 7999999776 999998541000   00000000001234433 33 345799999999999 89


Q ss_pred             EEEeCCCeEEEEeCCC
Q 003907          447 AIVSSKGTCHVFVLSP  462 (787)
Q Consensus       447 As~S~dgTVhIwdl~~  462 (787)
                      ++++.||+|+||++..
T Consensus       395 ~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          395 CSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEETTSEEEEEEECH
T ss_pred             EEEECCCCEEEeEccc
Confidence            9999999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.8e-18  Score=190.18  Aligned_cols=269  Identities=12%  Similarity=0.099  Sum_probs=163.7

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCceeEeeeeccCcEEEEEEecCCCCCCCCC---Ccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFR  127 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~--~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d---~F~  127 (787)
                      +|+..|..+.|..       +++.|++|..+| ++|||++  ..+++...+..+  .|..+.+.|.+.......   .+.
T Consensus       109 ~h~~~v~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          109 DCSSTVTQITMIP-------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             ECSSCEEEEEECT-------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             cCCCCEEEEEEeC-------CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEc
Confidence            3677788888863       356788888876 9999995  234454444433  455555444210000000   011


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecC--
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP--  202 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f---~s~V~sV~~s~--  202 (787)
                      ....+|++.+                                 .+++|++||+++++.+.+++.   ...|.++++++  
T Consensus       180 ~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          180 EEKSLLVALT---------------------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC  226 (437)
T ss_dssp             SSCEEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred             CCCCEEEEEe---------------------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence            2223554322                                 136899999999999999986   47999999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 RIVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                      ++|+++. ++.|++||+.+++.+.++. .+..+             ...+++.|.                         
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~-------------------------  268 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------ITHVEVCQF-------------------------  268 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------EEEEEECTT-------------------------
T ss_pred             CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------eEEEEeccc-------------------------
Confidence            6777765 5579999999988777765 22211             122322211                         


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                           ++|+ +                                                ..++.+..||.|+|||+.+++
T Consensus       269 -----~s~~-~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          269 -----YGKN-S------------------------------------------------VIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             -----TCTT-E------------------------------------------------EEEEEESTTEEEEEEETTTTE
T ss_pred             -----cCCC-c------------------------------------------------cEEEEEcCCCcEEEEEcCCCc
Confidence                 0000 0                                                012234567888888888887


Q ss_pred             EEEEecc--------------------------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc-CCCCC---
Q 003907          361 IISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR-SGSGN---  410 (787)
Q Consensus       361 ~v~~~~a--------------------------H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~-~~~g~---  410 (787)
                      .+..+.+                          |..+|.+++|+ +|++|+|++.|| .|++||+...... ...+.   
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~  372 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-SIVMFSLNELSSSKAVISPSRF  372 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-EEEEEETTCGGGCEEEECC--C
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-eEEEEECCCcccceEEeccccc
Confidence            7776664                          55668889999 789999999966 5999998642100 00000   


Q ss_pred             -Ccc---ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEe
Q 003907          411 -HKY---DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       411 -~~~---~~~~s~~~l~-----------~l~rG~~~a~I~slaFSpD--g~~LAs~S~dgTVhIwd  459 (787)
                       ..+   ........+.           ....+ +...|.+|+|+++  +.+|++++.||+|+||+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             CceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence             000   0000000000           00011 3457999999998  88999999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.82  E-value=2.2e-19  Score=195.03  Aligned_cols=240  Identities=9%  Similarity=0.032  Sum_probs=142.5

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      ..++..+.....+.|++...     ....|++.|.+|+|.|+.           +  +||..+.+.              
T Consensus        17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG-----------~--~las~s~d~--------------   64 (357)
T 4g56_B           17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDG-----------A--LLLAASSLS--------------   64 (357)
T ss_dssp             ----------------------------CCCSEEEEEEECSSS-----------C--EEEEEECSS--------------
T ss_pred             ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCC-----------C--EEEEEcCCC--------------
Confidence            33444444455799998542     234688999999999863           2  676533211              


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-----EEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEE
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-----HVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSV  227 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v-----~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl  227 (787)
                       +  ..|          +++|++|+..+++..     ....+...|.+|+|++  ++|+++.++.|+|||+.+++.+...
T Consensus        65 -~--~~w----------d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~  131 (357)
T 4g56_B           65 -S--RTW----------GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN  131 (357)
T ss_dssp             -S--SSC----------CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC
T ss_pred             -C--ccc----------cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE
Confidence             0  112          368999999887643     3345667899999988  4566666778999999887643221


Q ss_pred             E----ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907          228 L----TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (787)
Q Consensus       228 ~----t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk  303 (787)
                      .    .|..+             ...++++|       +.                           .            
T Consensus       132 ~~~~~~h~~~-------------V~~v~~sp-------dg---------------------------~------------  152 (357)
T 4g56_B          132 KFAKYEHDDI-------------VKTLSVFS-------DG---------------------------T------------  152 (357)
T ss_dssp             CEEECCCSSC-------------EEEEEECS-------SS---------------------------S------------
T ss_pred             eeccCCCCCC-------------EEEEEECC-------CC---------------------------C------------
Confidence            1    12111             11222221       10                           0            


Q ss_pred             hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-
Q 003907          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-  382 (787)
Q Consensus       304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-  382 (787)
                                                           .++++..||+|+|||+.+++.+..+.+|..+|.+++|+|++. 
T Consensus       153 -------------------------------------~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          153 -------------------------------------QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             -------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             -------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence                                                 122345689999999999999999999999999999999885 


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCC
Q 003907          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~  461 (787)
                      +|++++.||+ |+|||+..       +          ..+..+....+...|.+++|+||+ ++||+++.|++|+|||+.
T Consensus       196 ~~~s~~~dg~-v~~wd~~~-------~----------~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          196 IFLSCGEDGR-ILLWDTRK-------P----------KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CEEEEETTSC-EEECCTTS-------S----------SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             eeeeeccCCc-eEEEECCC-------C----------ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            8899999776 99999864       2          112222222233469999999984 789999999999999998


Q ss_pred             CCCCcccccccc
Q 003907          462 PFGGDSGFQTLS  473 (787)
Q Consensus       462 ~~gg~~~~~~H~  473 (787)
                      .......+..|.
T Consensus       258 ~~~~~~~~~~~~  269 (357)
T 4g56_B          258 NPDSAQTSAVHS  269 (357)
T ss_dssp             CGGGCEEECCCS
T ss_pred             CCcEeEEEeccc
Confidence            765555555664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.82  E-value=2.2e-18  Score=183.35  Aligned_cols=276  Identities=13%  Similarity=0.110  Sum_probs=167.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe--eeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el--ls~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||++. ++....  +..|.++|.++.+.|+.           
T Consensus        48 ~~~h~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-----------  108 (372)
T 1k8k_C           48 LKEHNGQVTGVDWAP-------DSNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPNE-----------  108 (372)
T ss_dssp             EECCSSCEEEEEEET-------TTTEEEEEETTSCEEEEEEET-TEEEEEEECCCCSSCEEEEEECTTS-----------
T ss_pred             ecCCCCcccEEEEeC-------CCCEEEEEcCCCeEEEEECCC-CeeeeeEEeecCCCceeEEEECCCC-----------
Confidence            346788899888874       356778877766 99999965 443333  35678899999998742           


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe--CCCcEEEEEecC-
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR--FRSSVCMVRCSP-  202 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~---v~tL~--f~s~V~sV~~s~-  202 (787)
                        .+|++.+.                                 .++|++||+++++.   ...+.  +...|.++++++ 
T Consensus       109 --~~l~~~~~---------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C          109 --KKFAVGSG---------------------------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             --SEEEEEET---------------------------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             --CEEEEEeC---------------------------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence              26655332                                 25799999998763   33442  356899999987 


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (787)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~  280 (787)
                       ++|+++. ++.|++||+...+...    .+.+..           .+. .+       .....+         ..+.. 
T Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~~~~----~~~~~~-----------~~~-~~-------~~~~~~---------~~~~~-  200 (372)
T 1k8k_C          154 SVLLAAGSCDFKCRIFSAYIKEVEE----RPAPTP-----------WGS-KM-------PFGELM---------FESSS-  200 (372)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSC----CCCCBT-----------TBS-CC-------CTTCEE---------EECCC-
T ss_pred             CCEEEEEcCCCCEEEEEcccccccc----cccccc-----------ccc-cc-------chhhhe---------EecCC-
Confidence             5777765 5689999976433100    000000           000 00       000000         00000 


Q ss_pred             CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (787)
Q Consensus       281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~  360 (787)
                                                         +      .+....+.++++.+    .++.+..||.|++||+.+++
T Consensus       201 -----------------------------------~------~~~v~~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          201 -----------------------------------S------CGWVHGVCFSANGS----RVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             -----------------------------------C------SSCEEEEEECSSSS----EEEEEETTTEEEEEEGGGTT
T ss_pred             -----------------------------------C------CCeEEEEEECCCCC----EEEEEeCCCEEEEEECCCCc
Confidence                                               0      00000011111111    23345678999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC--Cc---ccCCCCCC---------cccc---CCcceEE-
Q 003907          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--SC---MRSGSGNH---------KYDW---NSSHVHL-  422 (787)
Q Consensus       361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~--~~---~~~~~g~~---------~~~~---~~s~~~l-  422 (787)
                      .+..+..|..+|.+++|+|+|++|+++ .||. |+||++..  ..   ........         ...+   ....... 
T Consensus       236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
T 1k8k_C          236 AVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  313 (372)
T ss_dssp             EEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence            999999999999999999999999988 5565 99999854  10   00000000         0000   0000111 


Q ss_pred             -----EEEecccccccEEEEEEc-cCC---CEEEEEeCCCeEEEEeCCC
Q 003907          423 -----YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       423 -----~~l~rG~~~a~I~slaFS-pDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                           ..+..| +...|.+++|+ +||   ++|++++.||+|+||++..
T Consensus       314 ~~~~~~~~~~~-h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          314 SAAAGAGLDSL-HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             -----CCCSSS-SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             Ccccccccccc-ccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                 233334 34579999965 777   9999999999999999865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.82  E-value=3.3e-18  Score=186.83  Aligned_cols=185  Identities=9%  Similarity=-0.015  Sum_probs=125.8

Q ss_pred             CCEEEEEEC-CCCeEEEEEeCCC-cEEEEEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907          172 PTAVRFYSF-QSHCYEHVLRFRS-SVCMVRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI  243 (787)
Q Consensus       172 p~tVrlWdl-ktg~~v~tL~f~s-~V~sV~~s~-----~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~  243 (787)
                      +++|++|++ .+|+.+.++..++ .|..++|++     .+||.+. |++|+|||+.|+++++++.++.....        
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~--------  227 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA--------  227 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--------
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--------
Confidence            579999999 5588888887654 455555544     7788754 67899999999999999986543200        


Q ss_pred             ccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccC
Q 003907          244 NVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL  321 (787)
Q Consensus       244 ~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~  321 (787)
                        ....++|+|  ++++....+.                          +          .                   
T Consensus       228 --~v~~vafSpdG~~lvs~s~~~--------------------------~----------~-------------------  250 (356)
T 2w18_A          228 --SVCHKAYSEMGLLFIVLSHPC--------------------------A----------K-------------------  250 (356)
T ss_dssp             --CCEEEEEEETTEEEEEEC------------------------------------------------------------
T ss_pred             --eeEEEEECCCCCEEEEeccCC--------------------------C----------c-------------------
Confidence              122345554  2222221100                          0          0                   


Q ss_pred             CCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-----ccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       322 p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-----~aH~~pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                                   |     .++++..|++|++||..+++.+..+     .+|...+.+.++  +|.++|++|.|++ |+|
T Consensus       251 -------------w-----~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkI  309 (356)
T 2w18_A          251 -------------E-----SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAI  309 (356)
T ss_dssp             -------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEE
T ss_pred             -------------c-----eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEE
Confidence                         0     0234567999999999999887765     478776554444  4899999999775 999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      ||+..       |          +.+.+|. |++...+.+++|||||++|++|+.|+||+|||+
T Consensus       310 WDl~t-------G----------k~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLLL-------G----------QCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTT-------C----------SEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EECCC-------C----------cEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99965       3          4677774 444334557999999999999999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=7.1e-19  Score=188.57  Aligned_cols=101  Identities=11%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             cCCCceEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          345 MDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v-~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +..||.|+|||+.+++.+ ..+.. |..+|.+|+|+|+|.+|++++. + .|+|||++.....              ..+
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~~--------------~~~  251 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVGT--------------LAY  251 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTTC--------------BSS
T ss_pred             EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCcc--------------eee
Confidence            456899999999999887 88988 9999999999999999999995 6 6999999642100              000


Q ss_pred             EEEecccccccE--EEEEEccCCCEEEEEeC-CCeEEEEeCCCC
Q 003907          423 YKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPF  463 (787)
Q Consensus       423 ~~l~rG~~~a~I--~slaFSpDg~~LAs~S~-dgTVhIwdl~~~  463 (787)
                      ..+. + +...+  .+++|+|||++|++++. |++++||++...
T Consensus       252 ~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          252 PTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            0000 0 00112  46999999999999998 999999999754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.82  E-value=3.7e-18  Score=183.22  Aligned_cols=224  Identities=15%  Similarity=0.180  Sum_probs=161.4

Q ss_pred             CcEEEEEccCCCceeEeeeeccCcEEEEEEec-CCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcC
Q 003907           84 NGFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD  162 (787)
Q Consensus        84 ~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP-~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~  162 (787)
                      ..++||+++. ++..+++..|.++|.++++.| +.             .+||+.+.                        
T Consensus        23 ~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~~------------------------   64 (408)
T 4a11_B           23 STRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEG-------------RYMLSGGS------------------------   64 (408)
T ss_dssp             HHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTC-------------CEEEEEET------------------------
T ss_pred             Ccceeecccc-CcceeeeeccCCcEEEEEEecCCC-------------CEEEEEcC------------------------
Confidence            3478888854 567788888999999999987 42             26665321                        


Q ss_pred             CCCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCcee
Q 003907          163 SQSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENK  224 (787)
Q Consensus       163 ~~~~~~~~~p~tVrlWdlktg~~v~tL~--------------f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l  224 (787)
                               +++|++||+.+++....+.              +...|.++++++   ++|+++. ++.|++||+.+++..
T Consensus        65 ---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           65 ---------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             ---------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred             ---------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence                     2589999999987766654              567999999987   4677655 678999999998876


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~  304 (787)
                      ..+.. +.+             ...+++       ....                        +. +.            
T Consensus       136 ~~~~~-~~~-------------~~~~~~-------~~~~------------------------~~-~~------------  157 (408)
T 4a11_B          136 DVFNF-EET-------------VYSHHM-------SPVS------------------------TK-HC------------  157 (408)
T ss_dssp             EEEEC-SSC-------------EEEEEE-------CSSC------------------------SS-CC------------
T ss_pred             eeccC-CCc-------------eeeeEe-------ecCC------------------------CC-Cc------------
Confidence            66542 111             111222       1100                        00 00            


Q ss_pred             hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-E
Q 003907          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-L  383 (787)
Q Consensus       305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-l  383 (787)
                                                          .++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|+ +
T Consensus       158 ------------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  201 (408)
T 4a11_B          158 ------------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI  201 (408)
T ss_dssp             ------------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE
T ss_pred             ------------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE
Confidence                                                012345688999999999999999999999999999999999 6


Q ss_pred             EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-------------cccccccEEEEEEccCCCEEEEEe
Q 003907          384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------------RGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       384 LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-------------rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      |++++.||. |++||+....                ..+..+.             ...+...|.+++|+||+++|++++
T Consensus       202 l~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          202 LATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             EEEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999776 9999996421                0111110             011335699999999999999999


Q ss_pred             CCCeEEEEeCCCCCC
Q 003907          451 SKGTCHVFVLSPFGG  465 (787)
Q Consensus       451 ~dgTVhIwdl~~~gg  465 (787)
                      .||+|++||+.....
T Consensus       265 ~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          265 TDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TTSCEEEEETTTCCB
T ss_pred             CCCeEEEEECCCCcc
Confidence            999999999986543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.82  E-value=2.3e-18  Score=188.09  Aligned_cols=248  Identities=10%  Similarity=0.025  Sum_probs=174.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~ells~~dg~V~~v~~lP~P~~~~~~d  124 (787)
                      ..+|++.|..+.|...      ++++|++|..+| ++|||+...+      +....+..|.++|.++++.|+.       
T Consensus        77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-------  143 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-------  143 (402)
T ss_dssp             BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred             EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence            4568899999999631      356888888877 9999997643      3456677899999999999741       


Q ss_pred             CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--e-CCCcEEEEEec
Q 003907          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--R-FRSSVCMVRCS  201 (787)
Q Consensus       125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL--~-f~s~V~sV~~s  201 (787)
                           ..+|++.+.                                 +++|++||+++++.+.++  . +...|.+++++
T Consensus       144 -----~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          144 -----QNVLLSAGC---------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             -----TTEEEEEET---------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             -----CCEEEEEcC---------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence                 125654221                                 258999999999999999  4 45689999998


Q ss_pred             C--CeEEEEe-CCeEEEEECCCCceeEEE-EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccc
Q 003907          202 P--RIVAVGL-ATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQ  275 (787)
Q Consensus       202 ~--~~LaV~~-~~~I~iwD~~T~e~l~tl-~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q  275 (787)
                      +  ++|+++. ++.|++||+.+++.+.++ ..|...            ....++++|  ++|+.+.              
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~g~--------------  239 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT------------RPVHAVFVSEGKILTTGF--------------  239 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS------------SCCEEEECSTTEEEEEEE--------------
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC------------cceEEEEcCCCcEEEEec--------------
Confidence            7  5677654 668999999999888777 344331            012233322  1111110              


Q ss_pred             cCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEE
Q 003907          276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD  355 (787)
Q Consensus       276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwD  355 (787)
                                                                                          ....+|.|+|||
T Consensus       240 --------------------------------------------------------------------~~~~d~~i~iwd  251 (402)
T 2aq5_A          240 --------------------------------------------------------------------SRMSERQVALWD  251 (402)
T ss_dssp             --------------------------------------------------------------------CTTCCEEEEEEE
T ss_pred             --------------------------------------------------------------------cCCCCceEEEEc
Confidence                                                                                114588999999


Q ss_pred             CCCCcE-EEEec-cCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          356 FVTRAI-ISQFK-AHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       356 l~s~~~-v~~~~-aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                      +.+++. +..+. .|...|.+++|+|+|++|++++ .|| .|+|||+..       +.         ..+..+....+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i~i~d~~~-------~~---------~~~~~l~~~~~~~  314 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-SIRYFEITS-------EA---------PFLHYLSMFSSKE  314 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-CEEEEEECS-------ST---------TCEEEEEEECCSS
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-eEEEEEecC-------CC---------cceEeecccccCC
Confidence            988654 33333 5778899999999999997665 455 599999954       20         1133333212345


Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .|.+++|+||+.++++  .++++++|++...
T Consensus       315 ~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          315 SQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             cccceEEeccccccee--cceeEEEEEcCCC
Confidence            7999999999998874  5679999999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.82  E-value=2.2e-18  Score=181.46  Aligned_cols=207  Identities=14%  Similarity=0.169  Sum_probs=144.9

Q ss_pred             eeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 003907          100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS  179 (787)
Q Consensus       100 lls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWd  179 (787)
                      ++..|.++|..+++.|+.           +  +||..+.                                 +++|+|||
T Consensus         4 ~~~~h~~~V~~~~~s~~g-----------~--~las~s~---------------------------------D~~v~iw~   37 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYG-----------K--RMATCSS---------------------------------DKTIKIFE   37 (297)
T ss_dssp             ECCSCSSCEEEEEECTTS-----------S--EEEEEET---------------------------------TSCEEEEE
T ss_pred             eccCCcCceEEEEECCCC-----------C--EEEEEeC---------------------------------CCEEEEEe
Confidence            466789999999998642           2  6665321                                 26899999


Q ss_pred             CCC--CeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccce
Q 003907          180 FQS--HCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       180 lkt--g~~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      +.+  ++.+.++..+ ..|.+|+|++    ++||++. +++|++||+.+++  .+.++..|..+             ...
T Consensus        38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------v~~  104 (297)
T 2pm7_B           38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------------VNS  104 (297)
T ss_dssp             BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC-------------EEE
T ss_pred             cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc-------------eeE
Confidence            974  4678888755 5999999963    5777755 6789999998764  33333333321             122


Q ss_pred             eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (787)
Q Consensus       250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~  329 (787)
                      ++++|       ..                          .|.                                     
T Consensus       105 v~~~p-------~~--------------------------~g~-------------------------------------  114 (297)
T 2pm7_B          105 VQWAP-------HE--------------------------YGP-------------------------------------  114 (297)
T ss_dssp             EEECC-------GG--------------------------GCS-------------------------------------
T ss_pred             EEeCc-------CC--------------------------CCc-------------------------------------
Confidence            33322       00                          000                                     


Q ss_pred             ccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEEcCCCEE
Q 003907          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI  394 (787)
Q Consensus       330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSpd-------------G~lLATaS~dG~~I  394 (787)
                                 .++.+..||.|+|||+.++.  ....+.+|...|.+++|+|+             +++||||+.|++ |
T Consensus       115 -----------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v  182 (297)
T 2pm7_B          115 -----------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V  182 (297)
T ss_dssp             -----------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred             -----------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence                       11234568999999998763  24567899999999999997             579999999776 9


Q ss_pred             EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907          395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       395 rVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                      +|||+..       +.      .....+..+ .| +...|.+|+|+||+   ++||+++.|++|+||++..
T Consensus       183 ~lwd~~~-------~~------~~~~~~~~l-~~-H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          183 KIWKYNS-------DA------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEEET-------TT------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEEcC-------CC------ceEEEEEEe-cC-CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            9999853       10      001133444 34 34579999999995   8999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.1e-18  Score=189.71  Aligned_cols=176  Identities=13%  Similarity=0.175  Sum_probs=128.1

Q ss_pred             CEEEEEECC--CCeEEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE----EEEecCCcccCCCCc
Q 003907          173 TAVRFYSFQ--SHCYEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF----SVLTYPVPQLAGQGA  240 (787)
Q Consensus       173 ~tVrlWdlk--tg~~v~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~----tl~t~p~p~~~~~~~  240 (787)
                      ++|++||+.  +++.+..+.   +...|.+|++++  ++|+++. +..|++||+.+++...    ++..|..+       
T Consensus       125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~-------  197 (450)
T 2vdu_B          125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM-------  197 (450)
T ss_dssp             TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-------
T ss_pred             CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-------
Confidence            689999999  898888884   557899999987  5777765 4679999998876433    33332221       


Q ss_pred             cccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907          241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (787)
Q Consensus       241 ~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l  320 (787)
                            ...++++|       +.                         .++.                            
T Consensus       198 ------v~~~~~sp-------~~-------------------------~~~~----------------------------  211 (450)
T 2vdu_B          198 ------LTDVHLIK-------DS-------------------------DGHQ----------------------------  211 (450)
T ss_dssp             ------EEEEEEEE-------CT-------------------------TSCE----------------------------
T ss_pred             ------eEEEEEcC-------CC-------------------------CCCc----------------------------
Confidence                  12223222       10                         0000                            


Q ss_pred             CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                                          .+++++.||.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.|+ .|+|||+
T Consensus       212 --------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~  269 (450)
T 2vdu_B          212 --------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDW  269 (450)
T ss_dssp             --------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEET
T ss_pred             --------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEEC
Confidence                                112345689999999999988877 56999999999999 999999999966 5999998


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCeE
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGTC  455 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-----------------------~~~a~I~slaFSpDg~~LAs~S-~dgTV  455 (787)
                      ..       +          ..+..+..+                       .....|.+|+|+||+++|++++ .|++|
T Consensus       270 ~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i  332 (450)
T 2vdu_B          270 KT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI  332 (450)
T ss_dssp             TT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred             CC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence            64       2          234444311                       1123589999999999999999 89999


Q ss_pred             EEEeC
Q 003907          456 HVFVL  460 (787)
Q Consensus       456 hIwdl  460 (787)
                      +||++
T Consensus       333 ~iw~~  337 (450)
T 2vdu_B          333 IILEM  337 (450)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99999

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=2.5e-17  Score=177.78  Aligned_cols=273  Identities=15%  Similarity=0.082  Sum_probs=180.4

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +.++++|..+| ++|||++ .+++...+..+. .+.++++.|+.             ..|++....              
T Consensus         2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~~--------------   52 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPDG-------------TKVYVANAH--------------   52 (391)
T ss_dssp             EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTTS-------------SEEEEEEGG--------------
T ss_pred             CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCCC-------------CEEEEECCC--------------
Confidence            45777887765 9999996 466666666554 48899988742             245443311              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                                        .++|++||+++++.+..+..+..|..+++++  +.|+++.  ++.|++||+.+++.+..+..
T Consensus        53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  114 (391)
T 1l0q_A           53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT  114 (391)
T ss_dssp             ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence                              2589999999999999999989999999987  5665544  36899999999988777664


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEe-cCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (787)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAya-s~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la  306 (787)
                      +..              ...++++|  ++|+++ ..+..     ...|+..+            +....           
T Consensus       115 ~~~--------------~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~------------~~~~~-----------  152 (391)
T 1l0q_A          115 GKS--------------PLGLALSPDGKKLYVTNNGDKT-----VSVINTVT------------KAVIN-----------  152 (391)
T ss_dssp             SSS--------------EEEEEECTTSSEEEEEETTTTE-----EEEEETTT------------TEEEE-----------
T ss_pred             CCC--------------cceEEECCCCCEEEEEeCCCCE-----EEEEECCC------------CcEEE-----------
Confidence            332              24578887  566443 32211     11122111            11100           


Q ss_pred             cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (787)
Q Consensus       307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT  386 (787)
                           .+..       ........++++.+..   ...+..+|.|++||+.+++.+..+.. ...+.+++|+|+|++|++
T Consensus       153 -----~~~~-------~~~~~~~~~~~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          153 -----TVSV-------GRSPKGIAVTPDGTKV---YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYV  216 (391)
T ss_dssp             -----EEEC-------CSSEEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEE
T ss_pred             -----EEec-------CCCcceEEECCCCCEE---EEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEE
Confidence                 0000       0001112233333221   12456789999999999988877764 567899999999999999


Q ss_pred             EEc--CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEeCCCC
Q 003907          387 ASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       387 aS~--dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-As~S~dgTVhIwdl~~~  463 (787)
                      ++.  .+..|++||+..       +          ..+..+..+   ..+.+++|+|||++| ++++.|++|++||+...
T Consensus       217 ~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            884  355699999854       2          345555432   247899999999988 56688999999999874


Q ss_pred             CCccccccc
Q 003907          464 GGDSGFQTL  472 (787)
Q Consensus       464 gg~~~~~~H  472 (787)
                      .....+..|
T Consensus       277 ~~~~~~~~~  285 (391)
T 1l0q_A          277 TITATMAVG  285 (391)
T ss_dssp             EEEEEEECS
T ss_pred             cEEEEEECC
Confidence            333334433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.82  E-value=7.7e-18  Score=181.84  Aligned_cols=221  Identities=11%  Similarity=0.090  Sum_probs=159.0

Q ss_pred             ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (787)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (787)
                      .+...+..|.++|.++++.|+.            ..+|++.+.                                 +++|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~------------~~~l~s~~~---------------------------------dg~i   98 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTH------------PTTVAVGSK---------------------------------GGDI   98 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSC------------TTEEEEEEB---------------------------------TSCE
T ss_pred             ceEEeccCCCCCEEEEEECCCC------------CCEEEEEcC---------------------------------CCeE
Confidence            3455667888999999999741            126665331                                 2589


Q ss_pred             EEEECCCCeEEEEEe---CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          176 RFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       176 rlWdlktg~~v~tL~---f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +|||+.+++....++   +...|.++++++   ++|+++. ++.|++||+.+ +.+..+..+....          ....
T Consensus        99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------~~v~  167 (383)
T 3ei3_B           99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------YWYC  167 (383)
T ss_dssp             EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS----------CCEE
T ss_pred             EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC----------CCeE
Confidence            999999999888886   456999999987   5677655 56899999986 4555555432100          0012


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .++++|       +.                           .                                     
T Consensus       168 ~~~~~~-------~~---------------------------~-------------------------------------  176 (383)
T 3ei3_B          168 CVDVSV-------SR---------------------------Q-------------------------------------  176 (383)
T ss_dssp             EEEEET-------TT---------------------------T-------------------------------------
T ss_pred             EEEECC-------CC---------------------------C-------------------------------------
Confidence            223221       11                           0                                     


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                                  .++.+..||.|++||+ +++.+..+.+|..+|.+++|+|+|+ +|++++.|+ .|+|||+....    
T Consensus       177 ------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~----  238 (383)
T 3ei3_B          177 ------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIK----  238 (383)
T ss_dssp             ------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCC----
T ss_pred             ------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCC----
Confidence                        0123456899999999 5778899999999999999999999 999999966 59999995410    


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                               .....+..+  + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus       239 ---------~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          239 ---------DKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             ---------STTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             ---------cccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence                     001344444  2 345799999999 99999999999999999999876666666664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.81  E-value=2.4e-18  Score=185.47  Aligned_cols=267  Identities=13%  Similarity=0.089  Sum_probs=174.6

Q ss_pred             eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (787)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr  176 (787)
                      +..++..|.++|.+|++.|               .+|++.+.                                 +++|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~---------------~~l~s~~~---------------------------------dg~i~   39 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN---------------SFTVSCSG---------------------------------DGYLK   39 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS---------------SEEEEEET---------------------------------TSEEE
T ss_pred             hhhhhhhhhcCeEEEEecC---------------CeEEEEcC---------------------------------CCEEE
Confidence            3566778999999999875               16655321                                 26899


Q ss_pred             EEECCCCe------EEEEEeC-CCcEEEEEecC---------CeEEEEe-CCeEEEEECCCCce-----eEEEEecCCcc
Q 003907          177 FYSFQSHC------YEHVLRF-RSSVCMVRCSP---------RIVAVGL-ATQIYCFDALTLEN-----KFSVLTYPVPQ  234 (787)
Q Consensus       177 lWdlktg~------~v~tL~f-~s~V~sV~~s~---------~~LaV~~-~~~I~iwD~~T~e~-----l~tl~t~p~p~  234 (787)
                      +||+.+++      .+.++.. ...|.++++++         ++|+++. ++.|++||+.+++.     +..+..++...
T Consensus        40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  119 (397)
T 1sq9_A           40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM  119 (397)
T ss_dssp             EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred             EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc
Confidence            99999988      6777764 46899999975         4666654 56899999998886     67776653100


Q ss_pred             cCCCCccccccccceeEEc----c--ce-EEEecCCceecCcceeccccCC------CCCcCCCcCCCCCceeEeeehhh
Q 003907          235 LAGQGAVGINVGYGPMAVG----P--RW-LAYASNTLLLSNSGRLSPQNLT------PSGVSPSTSPGGSSLVARYAMEH  301 (787)
Q Consensus       235 ~~~~~~~~~~~~~~~lAls----p--r~-LAyas~~~~l~~~g~~s~q~lt------~~~~s~s~sp~~g~lva~~a~d~  301 (787)
                      .        ......++++    |  ++ |++++.+..+     ..|+..+      ...+.  +.|.            
T Consensus       120 ~--------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i-----~iwd~~~~~~~~~~~~~~--~~~~------------  172 (397)
T 1sq9_A          120 K--------KHSFWALKWGASNDRLLSHRLVATDVKGTT-----YIWKFHPFADESNSLTLN--WSPT------------  172 (397)
T ss_dssp             G--------GSCEEEEEEECCC----CEEEEEEETTSCE-----EEEEEESSSSHHHHTTTC--CCCE------------
T ss_pred             C--------CCcEEEEEEeeccCCCCceEEEEEeCCCcE-----EEEeCCccccccccceee--ccCc------------
Confidence            0        0013567888    6  67 8877654211     1232211      00000  0000            


Q ss_pred             hhhhhcccceeecccccc-cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---C---CCCeEE
Q 003907          302 SKQFAAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISA  374 (787)
Q Consensus       302 sk~la~G~~ktls~~~~~-l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H---~~pIsa  374 (787)
                               .++...... .........+.++++.     .++.+..+|.|++||+.+++.+..+..   |   ..+|.+
T Consensus       173 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          173 ---------LELQGTVESPMTPSQFATSVDISERG-----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             ---------EEEEEEECCSSSSCCCCCEEEECTTS-----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ---------ceeeeeeccccCCCCCceEEEECCCc-----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                     011000000 0001112223333322     345678899999999999999999999   9   999999


Q ss_pred             EEECCCCCEEEEEEcC---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-----------ccccEEEEEEc
Q 003907          375 LCFDPSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------TSATIQDICFS  440 (787)
Q Consensus       375 LaFSpdG~lLATaS~d---G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~-----------~~a~I~slaFS  440 (787)
                      ++|+|+|++|++++.|   | .|+|||+..       +          ..+..+....           +...|.+++|+
T Consensus       239 i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  300 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFG-CITLYETEF-------G----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  300 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEE-EEEEEETTT-------C----------CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             EEECCCCCEEEEEecCCCCc-eEEEEECCC-------C----------cccceeccCcccccccccccccCCcEEEEEEC
Confidence            9999999999999996   5 599999854       2          3455553200           34579999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~  470 (787)
                      ||+++|++++.||+|+|||+........+.
T Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          301 DSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            999999999999999999998754444444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.81  E-value=2.4e-17  Score=173.94  Aligned_cols=263  Identities=11%  Similarity=0.051  Sum_probs=164.5

Q ss_pred             eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (787)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr  176 (787)
                      +..++..|.++|..+++.|+.             +.|+++++.+                             ..+++|+
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~-------------~~l~~~~s~~-----------------------------~~d~~v~   47 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCS-------------AKFVTMGNFA-----------------------------RGTGVIQ   47 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTS-------------SEEEEEEC-------------------------------CCCEEEE
T ss_pred             hhhhccCCCCceEEEEEcCCC-------------ceEEEecCcc-----------------------------CCCcEEE
Confidence            455667799999999999741             2344333210                             0136899


Q ss_pred             EEECCCCeEEEEE--eCCCcEEEEEecC-----CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCcccccccc
Q 003907          177 FYSFQSHCYEHVL--RFRSSVCMVRCSP-----RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       177 lWdlktg~~v~tL--~f~s~V~sV~~s~-----~~LaV~~-~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      |||+.+++.....  .+...|.++++++     ++|+++. ++.|++||+.+++ .+..+..|..+             .
T Consensus        48 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v  114 (357)
T 3i2n_A           48 LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI-------------I  114 (357)
T ss_dssp             EEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC-------------E
T ss_pred             EEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc-------------e
Confidence            9999999875544  4667999999987     5666665 5689999999988 77777766553             1


Q ss_pred             cee------EEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907          248 GPM------AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (787)
Q Consensus       248 ~~l------Alsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~  319 (787)
                      ..+      +++|  ++|++++.+..     ...|+..+...           .+                +.+..+.. 
T Consensus       115 ~~~~~~~~~~~s~~~~~l~~~~~d~~-----i~vwd~~~~~~-----------~~----------------~~~~~~~~-  161 (357)
T 3i2n_A          115 NAIDGIGGLGIGEGAPEIVTGSRDGT-----VKVWDPRQKDD-----------PV----------------ANMEPVQG-  161 (357)
T ss_dssp             EEEEEESGGGCC-CCCEEEEEETTSC-----EEEECTTSCSS-----------CS----------------EEECCCTT-
T ss_pred             EEEeeccccccCCCccEEEEEeCCCe-----EEEEeCCCCCC-----------cc----------------eeccccCC-
Confidence            233      3345  57888765421     11233222100           00                00000000 


Q ss_pred             cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEE
Q 003907          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINI  396 (787)
Q Consensus       320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp---dG~lLATaS~dG~~IrV  396 (787)
                       ..........+...+.+.+..++.+..+|.|++||+.+++.+ ....|..+|.+++|+|   +|.+|++++.+| .|+|
T Consensus       162 -~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i  238 (357)
T 3i2n_A          162 -ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHV  238 (357)
T ss_dssp             -SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEE
T ss_pred             -CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEE
Confidence             000000011111111122223456778999999999998864 4467899999999999   999999999966 5999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ||+....     .       ........+ .+ +...|.+++|+||++ +|++++.||+|+|||+....
T Consensus       239 ~d~~~~~-----~-------~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          239 FDMRTQH-----P-------TKGFASVSE-KA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEE-----T-------TTEEEEEEE-EC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EeCcCCC-----c-------ccceeeecc-CC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            9985310     0       000111122 23 345799999999999 89999999999999997643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.81  E-value=3.6e-18  Score=178.41  Aligned_cols=225  Identities=14%  Similarity=0.175  Sum_probs=158.2

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      +++.|+++...+ +.+|+.......... ..|.++|.++.+.|+             ..+|++ +++             
T Consensus        20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-------------~~~l~~-~~d-------------   71 (337)
T 1gxr_A           20 DGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-------------TRHVYT-GGK-------------   71 (337)
T ss_dssp             SSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-------------SSEEEE-ECB-------------
T ss_pred             CCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-------------CcEEEE-cCC-------------
Confidence            467777777554 666655433322222 367889999999864             236654 221             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc-
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE-  222 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e-  222 (787)
                                          ++|++||+.+++   .+..+.   ....|.++++++  ++|+++. ++.|++||+.+++ 
T Consensus        72 --------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           72 --------------------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             --------------------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             --------------------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence                                589999998765   334443   456899999987  5677655 5689999999876 


Q ss_pred             -eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhh
Q 003907          223 -NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (787)
Q Consensus       223 -~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~  301 (787)
                       ....+..+..+             ...++++|       +.                           .          
T Consensus       132 ~~~~~~~~~~~~-------------i~~~~~~~-------~~---------------------------~----------  154 (337)
T 1gxr_A          132 RIKAELTSSAPA-------------CYALAISP-------DS---------------------------K----------  154 (337)
T ss_dssp             EEEEEEECSSSC-------------EEEEEECT-------TS---------------------------S----------
T ss_pred             ceeeecccCCCc-------------eEEEEECC-------CC---------------------------C----------
Confidence             33333332221             11223221       10                           0          


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 003907          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG  381 (787)
Q Consensus       302 sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG  381 (787)
                                                             .++.+..+|.|++||+.+++.+..+..|..+|.+++|+|+|
T Consensus       155 ---------------------------------------~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          155 ---------------------------------------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ---------------------------------------EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence                                                   01123467899999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ++|++++.+| .|++||+..       +          ..+..+.   ....|.+++|+||+++|++++.|++|++|++.
T Consensus       196 ~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          196 TKLWTGGLDN-TVRSWDLRE-------G----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             SEEEEEETTS-EEEEEETTT-------T----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEecCC-cEEEEECCC-------C----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            9999999966 499999854       2          3444443   23569999999999999999999999999997


Q ss_pred             CC
Q 003907          462 PF  463 (787)
Q Consensus       462 ~~  463 (787)
                      ..
T Consensus       255 ~~  256 (337)
T 1gxr_A          255 KP  256 (337)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.80  E-value=9.4e-18  Score=182.99  Aligned_cols=257  Identities=17%  Similarity=0.174  Sum_probs=162.4

Q ss_pred             cEEEEEEeeccCCCCCCCeEEEEEec--------CcEEEEEccCCCce--------eE-eeeeccCcEEEEEEecCCCCC
Q 003907           58 QVTWAGFDRLEYGPSVFKQVLLLGYQ--------NGFQVLDVEDASNF--------NE-LVSKRDGPVSFLQMQPFPVKD  120 (787)
Q Consensus        58 ~v~wa~Fd~l~~~~~~~~~vL~lG~~--------~G~qVWdv~~~~~~--------~e-lls~~dg~V~~v~~lP~P~~~  120 (787)
                      .|..+.|-.       ++++|+.|..        |.++||+++.....        .+ .++.++..|.++...      
T Consensus        16 PV~sv~fs~-------dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~------   82 (365)
T 4h5i_A           16 PAYGAKFLN-------NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS------   82 (365)
T ss_dssp             CEEEEEEEE-------TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE------
T ss_pred             CEEEEEEeC-------CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC------
Confidence            488888853       4788888853        23899999754321        11 244555566665543      


Q ss_pred             CCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-E---EEEEeCC----
Q 003907          121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-Y---EHVLRFR----  192 (787)
Q Consensus       121 ~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-~---v~tL~f~----  192 (787)
                             .  .+++. ++++.           ..-+..|+          ..+++|+|++.+++ .   +....+.    
T Consensus        83 -------~--~~~~~-g~~~~-----------~~~l~s~~----------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~  131 (365)
T 4h5i_A           83 -------K--GIILV-GCNEN-----------STKITQGK----------GNKHLRKFKYDKVNDQLEFLTSVDFDASTN  131 (365)
T ss_dssp             -------T--TEEEE-ECCCC-----------HHHHHHTS----------CCCCEEEEEEETTTTEEEEEEEECSSCCCC
T ss_pred             -------C--CEEEE-EECCC-----------ccEEEEec----------CCCcEEEEEecCCCceEEEeeeeceeecCC
Confidence                   1  24433 22210           00012222          23689999987643 2   2233322    


Q ss_pred             --CcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC
Q 003907          193 --SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT  263 (787)
Q Consensus       193 --s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~  263 (787)
                        ..+..|+|+|  ++||++.   +..|+|||+.+++.+.++.. ..+             ...++++|  ++||+++  
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~~-------------V~~v~fspdg~~l~s~s--  195 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RGE-------------VKDLHFSTDGKVVAYIT--  195 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SSC-------------CCEEEECTTSSEEEEEC--
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CCc-------------eEEEEEccCCceEEecc--
Confidence              2488999998  6777654   45799999999998888753 221             23456655  3333332  


Q ss_pred             ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccc
Q 003907          264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA  343 (787)
Q Consensus       264 ~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~  343 (787)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (365)
T 4h5i_A          196 --------------------------------------------------------------------------------  195 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCceEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCCc
Q 003907          344 DMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~--~~~aH~~pIsaLaFSpdG~lLATaS~dG~---~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                          ++.+++|+..+++.+.  ....|...|.+++|+|+|++|++++.++.   .+++|++....             ..
T Consensus       196 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~-------------~~  258 (365)
T 4h5i_A          196 ----GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN-------------TS  258 (365)
T ss_dssp             ----SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE-------------EE
T ss_pred             ----ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce-------------ec
Confidence                2345566666666543  34579999999999999999999998764   58889874310             00


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc-ccccc
Q 003907          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLS  473 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~-~~~H~  473 (787)
                      ......+. + +...|++|+|||||++||+++.|++|+|||+........ +.+|.
T Consensus       259 ~~~~~~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~  312 (365)
T 4h5i_A          259 VLRSKQVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS  312 (365)
T ss_dssp             EEEEEEEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS
T ss_pred             ceeeeeec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc
Confidence            01223333 2 334699999999999999999999999999987544434 35674

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.80  E-value=1.3e-19  Score=194.56  Aligned_cols=200  Identities=13%  Similarity=0.106  Sum_probs=127.1

Q ss_pred             CEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccc
Q 003907          173 TAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGI  243 (787)
Q Consensus       173 ~tVrlWdlktg--~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e---~l~tl~t~p~p~~~~~~~~~~  243 (787)
                      ++|+|||+.++  +.+.++..+ ..|.++++++  ++|+++. ++.|++||+.+++   ....+..|..+          
T Consensus        33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~----------  102 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA----------  102 (377)
T ss_dssp             SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred             CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence            58999999998  677777654 5899999987  5777765 5689999998876   22222222221          


Q ss_pred             ccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       244 ~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                         ...++++|       +.                           .                                
T Consensus       103 ---v~~~~~~~-------~~---------------------------~--------------------------------  113 (377)
T 3dwl_C          103 ---ATFVRWSP-------NE---------------------------D--------------------------------  113 (377)
T ss_dssp             ---EEEEECCT-------TS---------------------------S--------------------------------
T ss_pred             ---eEEEEECC-------CC---------------------------C--------------------------------
Confidence               11122211       00                           0                                


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                                       .++.+..||.|+|||+.+++   .+..+.. |..+|.+++|+|+|++||+++.||+ |+|||+
T Consensus       114 -----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~  175 (377)
T 3dwl_C          114 -----------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA  175 (377)
T ss_dssp             -----------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEE
T ss_pred             -----------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEE
Confidence                             12234568999999999877   4778887 9999999999999999999999776 999998


Q ss_pred             CCCcccCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC----ccccccc
Q 003907          400 MPSCMRSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG----DSGFQTL  472 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~---s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg----~~~~~~H  472 (787)
                      .......  ......+..   ....+..+  + +...|.+++|+|||++|++++.|++|+|||+.....    ...+..|
T Consensus       176 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (377)
T 3dwl_C          176 YVRDVDA--KPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS  250 (377)
T ss_dssp             CCSSCC---CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred             EecccCC--Cccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence            5310000  000000100   11233333  3 445799999999999999999999999999987665    4455566


Q ss_pred             cC
Q 003907          473 SS  474 (787)
Q Consensus       473 ~~  474 (787)
                      ..
T Consensus       251 ~~  252 (377)
T 3dwl_C          251 QL  252 (377)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.80  E-value=1.3e-17  Score=175.62  Aligned_cols=237  Identities=13%  Similarity=0.181  Sum_probs=170.2

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc-cCCCceeEeeee--ccCcEEEEEEecCCCCCCCCCCccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV-EDASNFNELVSK--RDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~-vL~lG~~~G-~qVWdv-~~~~~~~ells~--~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      .+.+.|..+.|..       +++ .|++|..+| +++||+ +. +.. ..+..  |.++|.++.+.| .           
T Consensus        54 ~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~-----------  112 (342)
T 1yfq_A           54 RYKHPLLCCNFID-------NTDLQIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D-----------  112 (342)
T ss_dssp             ECSSCEEEEEEEE-------SSSEEEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T-----------
T ss_pred             ecCCceEEEEECC-------CCCcEEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C-----------
Confidence            4677888888874       256 777777766 999999 64 444 55666  889999999986 2           


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---------CeEEEEEeCCCcEEEEE
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---------HCYEHVLRFRSSVCMVR  199 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt---------g~~v~tL~f~s~V~sV~  199 (787)
                        .+|++.+.                                 +++|++||+++         ++.+.++.+...|.+++
T Consensus       113 --~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  157 (342)
T 1yfq_A          113 --DKLIAASW---------------------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             --TEEEEEET---------------------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             --CEEEEEcC---------------------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence              15554321                                 26899999998         88788888888999999


Q ss_pred             ecCCeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907          200 CSPRIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (787)
Q Consensus       200 ~s~~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l  277 (787)
                      ++++.|+++. ++.|++||+.+ ++........+..           .....++++|.      +.              
T Consensus       158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i~~i~~~~~------~~--------------  206 (342)
T 1yfq_A          158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQIRDVALLPK------EQ--------------  206 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCEEEEEECSG------GG--------------
T ss_pred             ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------CceeEEEECCC------CC--------------
Confidence            9997777765 45899999988 6543322221110           00112222110      10              


Q ss_pred             CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (787)
Q Consensus       278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~  357 (787)
                                   .                                                 .++.+..+|.|+|||+.
T Consensus       207 -------------~-------------------------------------------------~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          207 -------------E-------------------------------------------------GYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             -------------C-------------------------------------------------EEEEEETTSEEEEEECC
T ss_pred             -------------C-------------------------------------------------EEEEEecCCcEEEEEEc
Confidence                         0                                                 01233468899999998


Q ss_pred             CC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          358 TR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       358 s~------~~v~~~~aH~~---------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ..      +.+..+..|..         +|.+++|+|+|++|++++.||. |+|||+..       +          ..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~  286 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKI  286 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEE
T ss_pred             CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H----------hHh
Confidence            76      77888888866         9999999999999999999776 99999854       2          455


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCe-EEEEeC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL  460 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgT-VhIwdl  460 (787)
                      ..+. +++...|.+++  ||+++|++++.||+ .+.|..
T Consensus       287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             hhhh-cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            5554 43256799999  99999999999999 666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.80  E-value=1.1e-18  Score=193.77  Aligned_cols=112  Identities=18%  Similarity=0.297  Sum_probs=86.9

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .+..+|.|++||+.. +.+..+.+|..+|.+|+|+|++. +|++++.|++ |+|||+....     ..         ..+
T Consensus       226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~~---------~~~  289 (435)
T 4e54_B          226 TGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----GK---------ASF  289 (435)
T ss_dssp             EECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----SS---------SCC
T ss_pred             EEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----cc---------ceE
Confidence            345789999999864 56778999999999999999986 7889999665 9999986421     00         011


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      . ...+ +...|.+++|+|||++|++++.||+|+|||+........+..|.
T Consensus       290 ~-~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          290 L-YSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             S-BCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             E-Eeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            1 1122 34579999999999999999999999999998877666666664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.80  E-value=1.4e-16  Score=174.22  Aligned_cols=238  Identities=7%  Similarity=0.008  Sum_probs=170.0

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      +.+.|..+.|..       .+++++++..+| +++||++. ++....+..+...+..+.+.|+.             ..|
T Consensus       168 ~~~~v~~~~~~~-------~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~l  226 (433)
T 3bws_A          168 KLGFVETISIPE-------HNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIR-------------DLV  226 (433)
T ss_dssp             TCCEEEEEEEGG-------GTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTT-------------TEE
T ss_pred             cCCceeEEEEcC-------CCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCC-------------CEE
Confidence            444555555532       367888888765 99999964 55666677778899999998742             245


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--  209 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--  209 (787)
                      ++....                                .++|++||+++++.+..+.....+..+++++  +.|+++.  
T Consensus       227 ~~~~~~--------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          227 YCSNWI--------------------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             EEEETT--------------------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEecC--------------------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence            443311                                2589999999999999998888899999987  5677655  


Q ss_pred             -------CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907          210 -------ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       210 -------~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                             ++.|++||+.+++.+..+.....                     ++.+++..+.                   
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~g-------------------  314 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGN---------------------KRHIVSGNTE-------------------  314 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEEEEC---------------------EEEEEECSST-------------------
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccCCCC---------------------cceEEECCCC-------------------
Confidence                   45899999999876555421101                     1122232211                   


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                              ..+.                                                ..+..++.|++||+.+++.+
T Consensus       315 --------~~l~------------------------------------------------~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          315 --------NKIY------------------------------------------------VSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             --------TEEE------------------------------------------------EEETTTTEEEEEETTTTEEE
T ss_pred             --------CEEE------------------------------------------------EEecCCCEEEEEECCCCcEE
Confidence                    0000                                                11245789999999999888


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCC--------------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          363 SQFKAHTSPISALCFDPSGTLLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG--------------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      ..+. |...+.+++|+|+|++|++++.+.              ..|++||+..       +          ..+..+.. 
T Consensus       339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~-  399 (433)
T 3bws_A          339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA-  399 (433)
T ss_dssp             EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC-
T ss_pred             EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC-
Confidence            8876 678899999999999999888742              2699999854       2          34445543 


Q ss_pred             cccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSP  462 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~  462 (787)
                        ...+.+++|+|||++|++++. |++|+||+++.
T Consensus       400 --~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          400 --GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             --SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             --CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence              245899999999999998875 99999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.80  E-value=2.8e-18  Score=182.59  Aligned_cols=208  Identities=14%  Similarity=0.137  Sum_probs=140.5

Q ss_pred             eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (787)
Q Consensus        98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl  177 (787)
                      +.++..|.++|.++++.|+           ++  +||..+.                                 +++|+|
T Consensus         6 ~~~~~~H~~~V~~v~~s~~-----------g~--~lasgs~---------------------------------D~~v~l   39 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYY-----------GT--RLATCSS---------------------------------DRSVKI   39 (316)
T ss_dssp             --------CCEEEEEECGG-----------GC--EEEEEET---------------------------------TTEEEE
T ss_pred             eeecccccCeEEEeeEcCC-----------CC--EEEEEeC---------------------------------CCeEEE
Confidence            4566789999999999874           22  6665321                                 369999


Q ss_pred             EECCCCe--EEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 003907          178 YSFQSHC--YEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       178 Wdlktg~--~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ||+++++  .+.+++.+ ..|.+|+|++    ++|+++. +++|++||+.+++  ...++..|..+             .
T Consensus        40 wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------V  106 (316)
T 3bg1_A           40 FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS-------------V  106 (316)
T ss_dssp             EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------C
T ss_pred             EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------e
Confidence            9999875  46677654 6999999963    5777655 6789999998864  34444444332             1


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                      ..++++|       +.                          .+.                                   
T Consensus       107 ~~v~~~p-------~~--------------------------~g~-----------------------------------  118 (316)
T 3bg1_A          107 NSVCWAP-------HD--------------------------YGL-----------------------------------  118 (316)
T ss_dssp             CEEEECC-------TT--------------------------TCS-----------------------------------
T ss_pred             EEEEECC-------CC--------------------------CCc-----------------------------------
Confidence            2333322       10                          000                                   


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEEE
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVTA  387 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~~~aH~~pIsaLaFSpd-----------------G~lLATa  387 (787)
                                   .++.+..||+|+|||+..+.   ....+.+|..+|.+++|+|+                 +++|||+
T Consensus       119 -------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  185 (316)
T 3bg1_A          119 -------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG  185 (316)
T ss_dssp             -------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred             -------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence                         12245678999999998763   24567899999999999998                 5799999


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCC
Q 003907          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       388 S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~  462 (787)
                      +.|++ |+|||+...      +        ....+..+ .| +...|.+++|+||+    ++||+++.|++|+||++..
T Consensus       186 s~D~~-v~lWd~~~~------~--------~~~~~~~l-~~-h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          186 GCDNL-IKLWKEEED------G--------QWKEEQKL-EA-HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             BTTSB-CCEEEECTT------S--------CEEEEECC-BC-CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cCCCe-EEEEEeCCC------C--------ccceeeec-cc-CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            99765 999998421      1        01233344 34 34579999999997    8999999999999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.4e-17  Score=176.81  Aligned_cols=212  Identities=14%  Similarity=0.161  Sum_probs=148.6

Q ss_pred             ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (787)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (787)
                      .+..++..|.++|.++++.|+             ..+||+.+.                                 +++|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~---------------------------------dg~i   35 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTI   35 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSS-------------SSEEEEEET---------------------------------TSCE
T ss_pred             CccEEecCCcccEEEEEEcCC-------------CCEEEEEEC---------------------------------CCcE
Confidence            456778899999999999874             236665321                                 2589


Q ss_pred             EEEECC--CCeEEEEEeCC-CcEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccc
Q 003907          176 RFYSFQ--SHCYEHVLRFR-SSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       176 rlWdlk--tg~~v~tL~f~-s~V~sV~~s----~~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      +|||+.  +++.+..+..+ ..|.+++++    .++|+++. ++.|++||+.+++  .+..+..+..+            
T Consensus        36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------  103 (379)
T 3jrp_A           36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------  103 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred             EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence            999998  66777788754 689999997    46777765 5689999998886  33333333221            


Q ss_pred             ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                       ...++++|       +.                          .+.                                 
T Consensus       104 -v~~~~~~~-------~~--------------------------~~~---------------------------------  116 (379)
T 3jrp_A          104 -VNSVQWAP-------HE--------------------------YGP---------------------------------  116 (379)
T ss_dssp             -EEEEEECC-------GG--------------------------GCS---------------------------------
T ss_pred             -eEEEEeCC-------CC--------------------------CCC---------------------------------
Confidence             12233221       10                          000                                 


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcC
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY  390 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSp-------------dG~lLATaS~d  390 (787)
                                     .++.+..+|.|+|||+.++.  ....+.+|..+|.+++|+|             ++.+|++++.|
T Consensus       117 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  181 (379)
T 3jrp_A          117 ---------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  181 (379)
T ss_dssp             ---------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred             ---------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence                           01234568999999998873  4556789999999999999             79999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEeCCCC
Q 003907          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~LAs~S~dgTVhIwdl~~~  463 (787)
                      |. |+|||+...       .      .....+..+. + +...|.+++|+||   +++|++++.||+|+|||+...
T Consensus       182 g~-i~i~d~~~~-------~------~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          182 NL-VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             SC-EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             Ce-EEEEEecCC-------C------cceeeEEEEe-c-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            76 999998531       0      0012333343 3 3457999999999   999999999999999999763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.79  E-value=6.8e-18  Score=182.99  Aligned_cols=116  Identities=14%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             cccCCCce-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC---CCC-----CC
Q 003907          343 ADMDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSG-----NH  411 (787)
Q Consensus       343 ~s~~~dG~-V~IwDl~s~~~v~~~~-a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~---~~g-----~~  411 (787)
                      ++++.||+ |+|||+.+++.+..|. + |..+|.+++|+|+|++||+++.|+ .|+|||+.......   ..+     ..
T Consensus       211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T 3vu4_A          211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIFNDQDNKRHALKGWINMKYF  289 (355)
T ss_dssp             EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEccCCCCcccccccceeecccc
Confidence            35667898 9999999999999998 5 999999999999999999999966 59999995421000   000     00


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ...|.   ...+.+..+ ....+..++|++||++|++++.||++++|++...
T Consensus       290 ~~~~~---~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          290 QSEWS---LCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCSSC---SEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccc---eeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            00000   111222221 1122467999999999999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.1e-17  Score=171.03  Aligned_cols=250  Identities=13%  Similarity=0.054  Sum_probs=165.9

Q ss_pred             CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (787)
Q Consensus        95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (787)
                      .++...+..|.++|.++++ |+.             .+|++.+.                                 +++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~~---------------------------------dg~   40 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDD-------------SKVASVSR---------------------------------DGT   40 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EET-------------TEEEEEET---------------------------------TSE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEEc---------------------------------CCc
Confidence            3466678899999999998 531             25654321                                 268


Q ss_pred             EEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCC---ceeEEEEecCCcccCCCCcccccccc
Q 003907          175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       175 VrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~---e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      |++||+.+++.+..+.. ...|.++++++  ++|+++. ++.|++||+.+.   +.+..+..|..+             .
T Consensus        41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i  107 (313)
T 3odt_A           41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V  107 (313)
T ss_dssp             EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred             EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence            99999999998888865 56899999987  6777765 567999998765   344555444432             3


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                      ..+++.+++|+.++.+..+     ..|+..              ...                ..+..+.      +...
T Consensus       108 ~~~~~~~~~l~~~~~d~~i-----~~~d~~--------------~~~----------------~~~~~~~------~~v~  146 (313)
T 3odt_A          108 CSLSFQDGVVISGSWDKTA-----KVWKEG--------------SLV----------------YNLQAHN------ASVW  146 (313)
T ss_dssp             EEEEEETTEEEEEETTSEE-----EEEETT--------------EEE----------------EEEECCS------SCEE
T ss_pred             EEEEecCCEEEEEeCCCCE-----EEEcCC--------------cEE----------------EecccCC------Ccee
Confidence            4566767888887765211     122200              000                0000000      0000


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~  406 (787)
                      ...+.+   .....++.+..+|.|++||  ..+.+..+.. |..+|.+++|+|+|. |++++.+| .|++||+..     
T Consensus       147 ~~~~~~---~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~-----  214 (313)
T 3odt_A          147 DAKVVS---FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHT-----  214 (313)
T ss_dssp             EEEEEE---TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTT-----
T ss_pred             EEEEcc---CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCc-----
Confidence            000000   0111244677899999999  5567778877 999999999999998 88999866 599999854     


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       407 ~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                        +          ..+..+. + +...|.+++|+||+ .|++++.||+|+|||+........+..|
T Consensus       215 --~----------~~~~~~~-~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          215 --G----------DVLRTYE-G-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             --C----------CEEEEEE-C-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             --h----------hhhhhhh-c-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence              2          3566664 3 34579999999999 5899999999999999875443344333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.79  E-value=6.1e-18  Score=178.79  Aligned_cols=225  Identities=12%  Similarity=0.158  Sum_probs=153.5

Q ss_pred             EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 003907           99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY  178 (787)
Q Consensus        99 ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlW  178 (787)
                      .+...|.++|.++++.|.+.         ...+++++.++                                 .++|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~---------------------------------~~~v~vw   49 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVG---------------------------------SNRVTLY   49 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEE---------------------------------TTEEEEE
T ss_pred             EeecCCCCceEEEEEecccC---------CCCceEEEECC---------------------------------CCEEEEE
Confidence            45667899999999998521         12234444332                                 1489999


Q ss_pred             ECCCCeEEEEEe------CCCcEEEEEecCC------eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          179 SFQSHCYEHVLR------FRSSVCMVRCSPR------IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       179 dlktg~~v~tL~------f~s~V~sV~~s~~------~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      |+.+++.+..++      ....|.++++++.      +|+++. ++.|++||+.+++.+.++..|..+            
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------  117 (366)
T 3k26_A           50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------  117 (366)
T ss_dssp             EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------
T ss_pred             EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------
Confidence            999998887775      3367999999875      677655 568999999999988888765542            


Q ss_pred             ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                       ...++++|       .+                           +.+                                
T Consensus       118 -i~~~~~~~-------~~---------------------------~~~--------------------------------  130 (366)
T 3k26_A          118 -INELKFHP-------RD---------------------------PNL--------------------------------  130 (366)
T ss_dssp             -EEEEEECS-------SC---------------------------TTE--------------------------------
T ss_pred             -EEEEEECC-------CC---------------------------CCE--------------------------------
Confidence             22333322       00                           000                                


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                                      ++.+..||.|+|||+.+++.+..+   .+|..+|.+++|+|+|++|++++.||. |++||+...
T Consensus       131 ----------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~  193 (366)
T 3k26_A          131 ----------------LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSK  193 (366)
T ss_dssp             ----------------EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC-EEEEESCSH
T ss_pred             ----------------EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC-EEEEECCCC
Confidence                            123456899999999999999888   789999999999999999999999776 999998642


Q ss_pred             ccc---------CCCCCCccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          403 CMR---------SGSGNHKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       403 ~~~---------~~~g~~~~~~~~s--~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ...         +..+.. ......  ....+....+ +...|.+++|+  +++|++++.|++|++||+.....
T Consensus       194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          194 RMMNAIKESYDYNPNKTN-RPFISQKIHFPDFSTRDI-HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             HHHHHHHHHHTCCGGGCS-SCCCCEEECCCSEEECSS-CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred             ccccccceeEEecCCCCc-ccccceeeccCccccccC-CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence            100         000000 000000  0001111122 34579999999  78999999999999999976544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.3e-17  Score=199.22  Aligned_cols=247  Identities=11%  Similarity=0.104  Sum_probs=166.7

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      +|++.|..+.|+.       ++++|++|..+| ++|||... .++...+ .|.++|..|++.|.            +  +
T Consensus        15 gh~~~V~~lafsp-------dg~~lAsgs~Dg~I~lw~~~~-~~~~~~~-~~~~~V~~l~fspg------------~--~   71 (902)
T 2oaj_A           15 GMSSKPIAAAFDF-------TQNLLAIATVTGEVHIYGQQQ-VEVVIKL-EDRSAIKEMRFVKG------------I--Y   71 (902)
T ss_dssp             ECSSCEEEEEEET-------TTTEEEEEETTSEEEEECSTT-CEEEEEC-SSCCCEEEEEEETT------------T--E
T ss_pred             CCCCCcEEEEECC-------CCCEEEEEeCCCEEEEEeCCC-cEEEEEc-CCCCCEEEEEEcCC------------C--E
Confidence            5788999999984       367999999887 99999853 3332222 36789999999861            2  5


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-  209 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-  209 (787)
                      |+.++.                                 +++|+|||++++++++++.+++.|.+|++++  ++|+++. 
T Consensus        72 L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           72 LVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred             EEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence            655332                                 2689999999999999999889999999988  6788876 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcc--cCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQ--LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~--~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      ++.|++||+.++++. .+.......  ....+..+   ....++++|       .+                        
T Consensus       119 dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~---~V~sl~~sp-------~~------------------------  163 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLS---PIVSIQWNP-------RD------------------------  163 (902)
T ss_dssp             TSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCC---CCCEEEEET-------TE------------------------
T ss_pred             CCcEEEEECCCCccc-cceeccccccccccccCCC---CeEEEEEcc-------CC------------------------
Confidence            567999999988642 111100000  00000000   011222222       10                        


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a  367 (787)
                         +                                                ..++.+..+|.| |||+.+++.+..+..
T Consensus       164 ---~------------------------------------------------~~l~~g~~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          164 ---I------------------------------------------------GTVLISYEYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             ---E------------------------------------------------EEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred             ---C------------------------------------------------CEEEEEeCCCcE-EEECCCCceEEEEec
Confidence               0                                                011234568899 999999998888876


Q ss_pred             C------------------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--Ee-
Q 003907          368 H------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH-  426 (787)
Q Consensus       368 H------------------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~--l~-  426 (787)
                      |                  ..+|.+++|+|+|++|||++.||+ |+|||+..       |          +.+..  +. 
T Consensus       192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~  253 (902)
T 2oaj_A          192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFE  253 (902)
T ss_dssp             CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSC
T ss_pred             ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeecc
Confidence            6                  578999999999999999999776 99999854       2          23221  11 


Q ss_pred             -ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CeEEEEeCC
Q 003907          427 -RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS  461 (787)
Q Consensus       427 -rG~------------~~a~I~slaFS----pDg-~~LAs~S~d-----gTVhIwdl~  461 (787)
                       .++            +...|.+++|+    ||+ .+|++++.|     +++++|++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~  311 (902)
T 2oaj_A          254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG  311 (902)
T ss_dssp             SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred             cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence             011            12369999995    554 567777666     389999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.78  E-value=1.7e-16  Score=187.80  Aligned_cols=244  Identities=14%  Similarity=0.163  Sum_probs=179.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ...|...|..+.|..       +++.|++|..+| ++|||+.. ++....+..|.++|.++.+.|+             .
T Consensus        51 ~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~s~~-------------~  109 (814)
T 3mkq_A           51 IQVTETPVRAGKFIA-------RKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPT-------------K  109 (814)
T ss_dssp             EECCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSS-------------S
T ss_pred             EecCCCcEEEEEEeC-------CCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEEEEEEeCC-------------C
Confidence            345778899999974       356788888876 99999964 6677778889999999999874             2


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCcEEEEEecC---CeE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP---RIV  205 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-~~v~tL~f-~s~V~sV~~s~---~~L  205 (787)
                      ++|++.+.                                 +++|++||+.++ ..+..+.. ...|.++.+++   +.|
T Consensus       110 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A          110 PYVLSGSD---------------------------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             SEEEEEET---------------------------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CEEEEEcC---------------------------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            36654321                                 258999999987 67777764 46899999987   466


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +++. ++.|++||+.+++....+..+...            ....+       ++....                     
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~------------~v~~~-------~~~~~~---------------------  196 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQER------------GVNYV-------DYYPLP---------------------  196 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTT------------CCCEE-------EECCST---------------------
T ss_pred             EEEeCCCeEEEEECCCCcceeEEecCCCC------------CEEEE-------EEEECC---------------------
Confidence            6655 568999999988877777653311            01122       222100                     


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                          + +.                                                .++.+..+|.|++||+.+++.+..
T Consensus       197 ----~-~~------------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~  223 (814)
T 3mkq_A          197 ----D-KP------------------------------------------------YMITASDDLTIKIWDYQTKSCVAT  223 (814)
T ss_dssp             ----T-CC------------------------------------------------EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             ----C-CC------------------------------------------------EEEEEeCCCEEEEEECCCCcEEEE
Confidence                0 00                                                012345689999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (787)
                      +.+|..+|.+++|+|+|.+|++++.||. |++||+..       +          ..+..+..  +...|++++|+|||+
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~--~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNV--GLERSWCIATHPTGR  283 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECC--SSSSEEEEEECTTCG
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeec--CCCcEEEEEEccCCC
Confidence            9999999999999999999999999776 99999854       2          35556543  234699999999997


Q ss_pred             --EEEEEeCCCeEEEEeCCCC
Q 003907          445 --WIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       445 --~LAs~S~dgTVhIwdl~~~  463 (787)
                        ++++++ ++.+.+|++...
T Consensus       284 ~~~~~~~~-~~~~~~~~~~~~  303 (814)
T 3mkq_A          284 KNYIASGF-DNGFTVLSLGND  303 (814)
T ss_dssp             GGEEEEEE-TTEEEEEECSCC
T ss_pred             ceEEEEEe-CCCEEEEEcCCC
Confidence              455555 666889988654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.78  E-value=9.8e-18  Score=184.25  Aligned_cols=260  Identities=13%  Similarity=0.036  Sum_probs=138.1

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCce----eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNF----NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~----~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~  148 (787)
                      .+++|+.|..++ ++|||++.....    ...+.+|.++|..|++.|.....     ......+||.++.          
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s~----------  164 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVGD----------  164 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEET----------
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEEC----------
Confidence            356788888765 999999653221    22367899999999999842111     0011236655321          


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce
Q 003907          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN  223 (787)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~-tL~f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~  223 (787)
                                             +++|+|||++++..+. .+.+++.|.+|+|+|   ++|+++. ++.|++||+.+++.
T Consensus       165 -----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          165 -----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             -----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             -----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence                                   3699999998876555 446788999999987   3677765 56799999999887


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (787)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk  303 (787)
                      ..++..++....           ...+...+.-+.....     ..++.                 ..            
T Consensus       222 ~~~~~~~~~~~~-----------~~~~s~~~~~~~~~~~-----~~~~~-----------------~~------------  256 (393)
T 4gq1_A          222 AEENSQTELVKN-----------PWLLTLNTLPLVNTCH-----SSGIA-----------------SS------------  256 (393)
T ss_dssp             ---------CSC-----------CCSEEEESGGGC-----------CCS-----------------SS------------
T ss_pred             cccccccCCccc-----------ceEEecccccceeeee-----ccccc-----------------cc------------
Confidence            665543322100           0011111100000000     00000                 00            


Q ss_pred             hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----
Q 003907          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----  379 (787)
Q Consensus       304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp----  379 (787)
                                            .....+.   ...+..++.+..|++++|||+..++....+..|...+..+.|.|    
T Consensus       257 ----------------------v~~v~~~---~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          257 ----------------------LANVRWI---GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             ----------------------CSEEEEE---TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ----------------------ceeeeee---cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                                  0000000   01111234567899999999998887777777776666555544    


Q ss_pred             ----------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          380 ----------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       380 ----------------dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                                      ++.++++++.|| .|+|||+..       +          ..+..+..  +...|.+|+|||||
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~--~~~~V~svafspdG  371 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQ--LGMPIVDFCWHQDG  371 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEE--CSSCEEEEEECTTS
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecC--CCCcEEEEEEcCCC
Confidence                            344666777755 599999864       2          12233332  23479999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~  462 (787)
                      ++||+++++| +.||.+..
T Consensus       372 ~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          372 SHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SEEEEEESSE-EEEEEEGG
T ss_pred             CEEEEEeCCC-eEEEEEeC
Confidence            9999999876 66666643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4.2e-18  Score=196.33  Aligned_cols=114  Identities=11%  Similarity=-0.032  Sum_probs=88.2

Q ss_pred             ccccCCCceEEEEECCCC-cEEEEeccCCCCeEEE--EECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          342 GADMDNAGIVVVKDFVTR-AIISQFKAHTSPISAL--CFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaL--aFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      ++++..||+|+|||+.++ .+...+.+|+.+|.+|  +|+|+| ++|||||.|+ .|+|||++.       +        
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~~~-------~--------  343 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNPKD-------I--------  343 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-EEEEECGGG-------H--------
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-eEEEEECCC-------C--------
Confidence            345678999999999876 4456789999999999  689998 9999999966 599999853       1        


Q ss_pred             cceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907          418 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (787)
Q Consensus       418 s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~  474 (787)
                        .++..+. ++.. ..|.+++|+||++.|++++.|++|+|||+........+.+|..
T Consensus       344 --~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          344 --ATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             --HHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred             --Ccccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence              1222222 2221 2478899999999999999999999999987665566777753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.77  E-value=2e-16  Score=166.00  Aligned_cols=213  Identities=12%  Similarity=0.092  Sum_probs=148.7

Q ss_pred             ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (787)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (787)
                      .++.+|.+|.++|.+|++.|+-            ..+||..+.                                 +++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~------------~~~l~S~s~---------------------------------D~~i   63 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQF------------PDMILSASR---------------------------------DKTI   63 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTC------------TTEEEEEET---------------------------------TSCE
T ss_pred             EEEEEECCccCCEEEEEEeCCC------------CCEEEEEcC---------------------------------CCeE
Confidence            4566788999999999999741            126654321                                 3689


Q ss_pred             EEEECCCCe-----EEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          176 RFYSFQSHC-----YEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       176 rlWdlktg~-----~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      +|||+.+++     ..++++.+ ..|.++.+++  ++|+++. ++.|++|+............+...             
T Consensus        64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------  130 (340)
T 4aow_A           64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-------------  130 (340)
T ss_dssp             EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred             EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence            999987653     46667654 5899999987  5777655 568999998887655444332211             


Q ss_pred             cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ...+.       +....                           .                                   
T Consensus       131 ~~~~~-------~~~~~---------------------------~-----------------------------------  141 (340)
T 4aow_A          131 VLSVA-------FSSDN---------------------------R-----------------------------------  141 (340)
T ss_dssp             EEEEE-------ECTTS---------------------------S-----------------------------------
T ss_pred             eeEEE-------EeecC---------------------------c-----------------------------------
Confidence            00011       11100                           0                                   


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCc
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSC  403 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpdG--~lLATaS~dG~~IrVWdi~~~~  403 (787)
                                    .++++..||.+++||+..... ...+.+|...|.+++|++++  .++++++.|+. |++||+..  
T Consensus       142 --------------~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~--  204 (340)
T 4aow_A          142 --------------QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN--  204 (340)
T ss_dssp             --------------CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT--
T ss_pred             --------------cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC--
Confidence                          112345689999999987654 44567899999999998865  57899999665 99999854  


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 003907          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (787)
Q Consensus       404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~  469 (787)
                           +          ..+..+. + +...|.+|+|+||+++|++++.|++|+|||+........+
T Consensus       205 -----~----------~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          205 -----C----------KLKTNHI-G-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             -----T----------EEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             -----C----------ceeeEec-C-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence                 2          3445553 4 3457999999999999999999999999999865433333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.76  E-value=2.9e-16  Score=163.04  Aligned_cols=102  Identities=22%  Similarity=0.229  Sum_probs=78.0

Q ss_pred             ccCCCceEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~-------------aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                      .+..||.|+|||+.+++.+..+.             .|...|.+++|+|+   +.+|++++.++. +.+|+...      
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~------  201 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD------  201 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT------
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC------
Confidence            45678999999998876544433             68899999999997   999999999664 66666532      


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCCC
Q 003907          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~~  463 (787)
                       +        ....+..+. + +...|.+++|+||+    ++|++++.||+|+|||+...
T Consensus       202 -~--------~~~~~~~~~-~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          202 -G--------KLHVAAKLP-G-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             -S--------CEEEEEECC-C-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             -C--------ceeeeeecC-C-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence             1        012233332 3 34579999999998    89999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.75  E-value=1.1e-16  Score=175.12  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             cccCCCceEEEEECCC-CcEEE-------EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          343 ADMDNAGIVVVKDFVT-RAIIS-------QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       343 ~s~~~dG~V~IwDl~s-~~~v~-------~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      +++ .||.|+|||+.+ ++.+.       .+.+|...|.+++|+|+| ++||+++.||+ |+|||+......        
T Consensus       193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~--------  262 (447)
T 3dw8_B          193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALC--------  262 (447)
T ss_dssp             EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSS--------
T ss_pred             EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCccc--------
Confidence            455 699999999984 44444       367899999999999999 99999999776 999998642100        


Q ss_pred             ccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          414 DWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                           ..++..+. ++..           ..|.+++|+|||++|++++. ++|+|||+..
T Consensus       263 -----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          263 -----DRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             -----CTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             -----cceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence                 00122332 2111           26999999999999999999 9999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.74  E-value=2.8e-16  Score=174.27  Aligned_cols=103  Identities=18%  Similarity=0.284  Sum_probs=83.4

Q ss_pred             ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      .+..+|.|+|||+.++   +.+..+.+|..+|++|+|+|+|. +||+++.|| .|+|||+...      +          
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~------~----------  311 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNL------K----------  311 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCT------T----------
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCC------C----------
Confidence            3456899999999987   57788889999999999999997 799999966 4999999541      1          


Q ss_pred             eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCCCCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ..+..+..  +...|.+|+|+|+++ +|++++.|++|+|||+...+.
T Consensus       312 ~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          312 LKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             SCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             CCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            23444442  345799999999995 799999999999999987543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.73  E-value=4.5e-16  Score=170.32  Aligned_cols=216  Identities=14%  Similarity=0.119  Sum_probs=154.4

Q ss_pred             CCEEEEEECCCCeEEEEEeC--CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      +++|++||+.+++....+..  ...|.+|++++  ++|+++. ++.|++||+.+++.+.++..|..+             
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------  178 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR-------------  178 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence            46899999999999988876  56899999987  6788776 568999999999988888766543             


Q ss_pred             cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ...+++.+++|+.++.+..+     ..|+....           +..+                +.+..+.      +..
T Consensus       179 v~~~~~~~~~l~~~~~dg~i-----~i~d~~~~-----------~~~~----------------~~~~~~~------~~v  220 (401)
T 4aez_A          179 VGCLSWNRHVLSSGSRSGAI-----HHHDVRIA-----------NHQI----------------GTLQGHS------SEV  220 (401)
T ss_dssp             EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCS------SCE
T ss_pred             eEEEEECCCEEEEEcCCCCE-----EEEecccC-----------ccee----------------eEEcCCC------CCe
Confidence            34577778888888765321     12332110           0000                1111110      111


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEE--cCCCEEEEEeCCCCc
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMPSC  403 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS--~dG~~IrVWdi~~~~  403 (787)
                      ..+.++++.    ..++.+..||.|+|||+.+++.+..+..|..+|.+++|+|+| .+|++++  .|| .|++||+..  
T Consensus       221 ~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~--  293 (401)
T 4aez_A          221 CGLAWRSDG----LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT--  293 (401)
T ss_dssp             EEEEECTTS----SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT--
T ss_pred             eEEEEcCCC----CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC--
Confidence            122233322    234567889999999999999999999999999999999976 5677765  545 599999854  


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCC
Q 003907          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF  463 (787)
Q Consensus       404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~  463 (787)
                           +          ..+..+.   +...|.+++|+||+++|++++  .||+|+||++...
T Consensus       294 -----~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          294 -----G----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             -----C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             -----C----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence                 2          3555554   234699999999999999955  8999999999763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.73  E-value=8.1e-16  Score=169.58  Aligned_cols=226  Identities=15%  Similarity=0.146  Sum_probs=155.1

Q ss_pred             CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      ++|+|||+.+|++++.++++   ..|.+|+|++  ++||+|. ++.|+|||+.+++.+.++..|...             
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-------------  191 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-------------  191 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-------------
Confidence            68999999999999988754   3799999998  6888876 567999999999999888876653             


Q ss_pred             cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ...++..++.|+.++.+..+     ..|+....           ...+                .++..+...      .
T Consensus       192 v~~~s~~~~~l~sgs~d~~i-----~~~d~~~~-----------~~~~----------------~~~~~h~~~------~  233 (420)
T 4gga_A          192 VGSLSWNSYILSSGSRSGHI-----HHHDVRVA-----------EHHV----------------ATLSGHSQE------V  233 (420)
T ss_dssp             EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCSSC------E
T ss_pred             eEEEeeCCCEEEEEeCCCce-----eEeeeccc-----------ceee----------------EEecccccc------e
Confidence            34566677888888765321     11221110           0000                111111100      0


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCC-CEEEEEE-cCCCEEEEEeCC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSG-TLLVTAS-VYGNNINIFRIM  400 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG-~lLATaS-~dG~~IrVWdi~  400 (787)
                      ....+.+.    +..++.+..||.|+|||..+++    .+..+..|..+|.+++|+|++ .+|++++ ..+..|+|||+.
T Consensus       234 ~~~~~~~~----g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          234 CGLRWAPD----GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             EEEEECTT----SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             eeeeecCC----CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence            01111111    1234567789999999998764    456778899999999999964 5666654 234569999996


Q ss_pred             CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCCcccccccc
Q 003907          401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      .       +          ..+..+..   ...|.++.|+|+++.|++++  .|++|+|||+........+.+|.
T Consensus       310 t-------~----------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          310 S-------G----------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             T-------T----------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             c-------c----------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence            4       3          35555542   24689999999999998876  78999999998766556677775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.1e-16  Score=173.51  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=82.0

Q ss_pred             CCCceEEEEECCCCcEEE----EeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          346 DNAGIVVVKDFVTRAIIS----QFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~----~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      ..+|.|.+||+.+++...    .+.+|..+|.+|+|+|+   |++|++++.|++ |+|||+..       +         
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~-------~---------  230 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQ-------C---------  230 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESC-------T---------
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCC-------C---------
Confidence            357889999988776544    78899999999999999   999999999775 99999854       2         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                       ..+..+..|+ ...|.+++|+ |+++|++++.|++|+|||+.....
T Consensus       231 -~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          231 -FIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             -TCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             -ceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence             2444544453 4579999999 999999999999999999986543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.70  E-value=8.6e-15  Score=162.60  Aligned_cols=238  Identities=15%  Similarity=0.066  Sum_probs=160.8

Q ss_pred             CeEEEEEec------CcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907           75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (787)
Q Consensus        75 ~~vL~lG~~------~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~  148 (787)
                      .+++.++..      ..+++||++ .+ ....+..|.+.|..+++.|+.           +  .||.++.++        
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~-~~~~l~~~~~~v~~~~~Spdg-----------~--~la~~s~~~--------  200 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYD-GY-NQFVVHRSPQPLMSPAWSPDG-----------S--KLAYVTFES--------  200 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETT-SC-SCEEEEEESSCEEEEEECTTS-----------S--EEEEEECTT--------
T ss_pred             CEEEEEEecCCCCccceEEEEcCC-CC-CCEEEeCCCCcceeeEEcCCC-----------C--EEEEEEecC--------
Confidence            355555554      358999995 33 345666788899999999852           2  666644321        


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE-EeC---CeEEEEECCCCc
Q 003907          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLA---TQIYCFDALTLE  222 (787)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV-~~~---~~I~iwD~~T~e  222 (787)
                                            ...+|++||+++++......+...+.+++|+|  +.|++ +..   ..|++||+.+++
T Consensus       201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence                                  02589999999999876556778999999998  56774 432   359999999887


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d  300 (787)
                      . ..+..+...             ...++++|  ++|++++..                                     
T Consensus       259 ~-~~l~~~~~~-------------~~~~~~spdg~~l~~~s~~-------------------------------------  287 (415)
T 2hqs_A          259 I-RQVTDGRSN-------------NTEPTWFPDSQNLAFTSDQ-------------------------------------  287 (415)
T ss_dssp             E-EECCCCSSC-------------EEEEEECTTSSEEEEEECT-------------------------------------
T ss_pred             E-EeCcCCCCc-------------ccceEECCCCCEEEEEECC-------------------------------------
Confidence            4 344333221             23455555  455544311                                     


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (787)
Q Consensus       301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd  380 (787)
                                                                   .....|.+||+.+++. ..+..|...+.+++|+||
T Consensus       288 ---------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd  321 (415)
T 2hqs_A          288 ---------------------------------------------AGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD  321 (415)
T ss_dssp             ---------------------------------------------TSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred             ---------------------------------------------CCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence                                                         0112577889887763 456677788999999999


Q ss_pred             CCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eE
Q 003907          381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC  455 (787)
Q Consensus       381 G~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg---TV  455 (787)
                      |++||+++.++  ..|.+||+..       +           .+..+..+   ..+.+++|+|||++|+.++.++   ++
T Consensus       322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL  380 (415)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence            99999988752  4699999853       2           22334322   2689999999999999998877   79


Q ss_pred             EEEeCCCCCCccccccccCCC
Q 003907          456 HVFVLSPFGGDSGFQTLSSQG  476 (787)
Q Consensus       456 hIwdl~~~gg~~~~~~H~~~~  476 (787)
                      .+||+. .+....+..|...+
T Consensus       381 ~~~d~~-g~~~~~l~~~~~~v  400 (415)
T 2hqs_A          381 NLVSTD-GRFKARLPATDGQV  400 (415)
T ss_dssp             EEEETT-SCCEEECCCSSSEE
T ss_pred             EEEECC-CCcEEEeeCCCCCC
Confidence            999986 23344555554333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.70  E-value=1e-15  Score=161.42  Aligned_cols=259  Identities=13%  Similarity=0.031  Sum_probs=158.8

Q ss_pred             CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (787)
Q Consensus        95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (787)
                      .+..+++..|.+.|.+|++.|+-          ....+|++.+.                                 +++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~----------~~g~~l~~~~~---------------------------------dg~   65 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPT----------LPGNFLIAGSW---------------------------------AND   65 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTT----------SSSEEEEEEET---------------------------------TSE
T ss_pred             cceeEeccCCCCceEEEEEcCCC----------CCceEEEEECC---------------------------------CCc
Confidence            33456788899999999999741          00136654221                                 258


Q ss_pred             EEEEECCC-CeEE-EEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       175 VrlWdlkt-g~~v-~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      |+|||+.+ ++.+ ..+. +...|.++++++  ++|+++. ++.|++||+.+++.+. +..|..+             ..
T Consensus        66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~  131 (368)
T 3mmy_A           66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK  131 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred             EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence            99999997 5555 6665 456999999987  5777765 5689999999988655 3444442             34


Q ss_pred             eeEE--cc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          249 PMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       249 ~lAl--sp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      .+++  +|  ++|++++.+..     ...|+..+...            +.                .+...       .
T Consensus       132 ~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~------------~~----------------~~~~~-------~  171 (368)
T 3mmy_A          132 TIHWIKAPNYSCVMTGSWDKT-----LKFWDTRSSNP------------MM----------------VLQLP-------E  171 (368)
T ss_dssp             EEEEEECSSCEEEEEEETTSE-----EEEECSSCSSC------------SE----------------EEECS-------S
T ss_pred             EEEEEeCCCCCEEEEccCCCc-----EEEEECCCCcE------------EE----------------EEecC-------C
Confidence            5777  55  56877765421     11233222110            00                00000       0


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe--ccCCCCeEEEEECCCCCE----EEEEEcCCCEEEEEe
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF--KAHTSPISALCFDPSGTL----LVTASVYGNNINIFR  398 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~--~aH~~pIsaLaFSpdG~l----LATaS~dG~~IrVWd  398 (787)
                      ......+..      .....+..++.+.+||+.........  ..+...+.++++.+++..    |++++.+| .|+|||
T Consensus       172 ~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~  244 (368)
T 3mmy_A          172 RCYCADVIY------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHY  244 (368)
T ss_dssp             CEEEEEEET------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEE
T ss_pred             CceEEEecC------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEe
Confidence            000000000      01224556899999999876543322  234556677777665554    99999966 599999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      +....              ....+..+. ++..           ..|.+++|+||+++|++++.||+|+|||+.......
T Consensus       245 ~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (368)
T 3mmy_A          245 INPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK  309 (368)
T ss_dssp             SSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence            96420              001222332 1111           159999999999999999999999999998654444


Q ss_pred             ccccc
Q 003907          468 GFQTL  472 (787)
Q Consensus       468 ~~~~H  472 (787)
                      .+..|
T Consensus       310 ~~~~~  314 (368)
T 3mmy_A          310 TSEQL  314 (368)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            44444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.70  E-value=1e-15  Score=167.18  Aligned_cols=55  Identities=11%  Similarity=0.189  Sum_probs=47.3

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIs-aLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      ++..||+|+|||+.+++.+.+|++|...+. +++|||||++|||||.|++ |||||+
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~  355 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY  355 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence            456789999999999999999999987655 6999999999999999775 999995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.69  E-value=9.8e-15  Score=159.60  Aligned_cols=230  Identities=11%  Similarity=0.127  Sum_probs=158.4

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEe-----eeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNEL-----VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~el-----ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~  147 (787)
                      .+.+++++..+| +++||++. +++...     +..|.+.|..+.+.|+             ..+++. +..        
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~s-~~~--------  189 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEH-------------NELWVS-QMQ--------  189 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGG-------------TEEEEE-EGG--------
T ss_pred             CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCC-------------CEEEEE-ECC--------
Confidence            467788887765 99999964 555552     3356788999998653             125433 211        


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEE-EE-eCCeEEEEECCCCc
Q 003907          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVA-VG-LATQIYCFDALTLE  222 (787)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~La-V~-~~~~I~iwD~~T~e  222 (787)
                                              +++|++||+++++.+.++..+ ..+..+++++  +.|+ ++ .++.|++||+.+++
T Consensus       190 ------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          190 ------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             ------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             ------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence                                    258999999999999999754 5899999987  4554 44 35789999999988


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d  300 (787)
                      .+..+..+..              ...++++|  ++|++++...                                    
T Consensus       246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~~------------------------------------  275 (433)
T 3bws_A          246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFSA------------------------------------  275 (433)
T ss_dssp             EEEECCCCSE--------------EEEEEECTTSSEEEEEEEES------------------------------------
T ss_pred             EEEEecCCCC--------------ceEEEEcCCCCEEEEEECCC------------------------------------
Confidence            7655443111              12345544  3333332100                                    


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (787)
Q Consensus       301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd  380 (787)
                                             +           .       ....+|.|++||+.+++.+..+ .|...+.+++|+|+
T Consensus       276 -----------------------~-----------~-------~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~  313 (433)
T 3bws_A          276 -----------------------S-----------N-------QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT  313 (433)
T ss_dssp             -----------------------C-----------T-------TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSS
T ss_pred             -----------------------C-----------c-------cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCC
Confidence                                   0           0       0025889999999998877665 56668999999999


Q ss_pred             CCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC--------
Q 003907          381 GTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS--------  451 (787)
Q Consensus       381 G~lL-ATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~--------  451 (787)
                      |+.| ++++. +..|++||+..       +          ..+..+.   ....+.+++|+|||++|++++.        
T Consensus       314 g~~l~~~~~~-~~~v~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  372 (433)
T 3bws_A          314 ENKIYVSDMC-CSKIEVYDLKE-------K----------KVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEG  372 (433)
T ss_dssp             TTEEEEEETT-TTEEEEEETTT-------T----------EEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred             CCEEEEEecC-CCEEEEEECCC-------C----------cEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence            9755 55555 55699999853       2          3444443   2345899999999999998887        


Q ss_pred             -------CCeEEEEeCCCC
Q 003907          452 -------KGTCHVFVLSPF  463 (787)
Q Consensus       452 -------dgTVhIwdl~~~  463 (787)
                             ||+|++||+...
T Consensus       373 ~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          373 YLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             TTSCCSSCCEEEEEETTTT
T ss_pred             cccccccceEEEEEECCCC
Confidence                   579999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.69  E-value=3.8e-15  Score=154.79  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=148.0

Q ss_pred             CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      ++|+|||+.+|+++++++++   ..|.+|++++  ++||+|. ++.|++||+.+++.+.++..|...             
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-------------  111 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-------------  111 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------------
Confidence            58999999999999999754   3799999988  6788765 567999999999999988876653             


Q ss_pred             cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ...++..++.|+.++.+..+.     .+.....           ...+                +++.++..      ..
T Consensus       112 ~~~~~~~~~~l~s~~~~~~~~-----~~~~~~~-----------~~~~----------------~~~~~~~~------~~  153 (318)
T 4ggc_A          112 VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EHHV----------------ATLSGHSQ------EV  153 (318)
T ss_dssp             EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SCEE----------------EEEECCSS------CE
T ss_pred             EEEeecCCCEEEEEecCCceE-----eeecCCC-----------ceeE----------------EEEcCccC------ce
Confidence            233455557888876542110     0111100           0000                01111000      00


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCE-E--EEEEcCCCEEEEEeC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTL-L--VTASVYGNNINIFRI  399 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG~l-L--ATaS~dG~~IrVWdi  399 (787)
                      ....+.+..    ..++++..||+|+|||+.+++    .......|..+|.+++++|++.. +  ++++. +..|+|||.
T Consensus       154 ~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~i~lwd~  228 (318)
T 4ggc_A          154 CGLRWAPDG----RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNV  228 (318)
T ss_dssp             EEEEECTTS----SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-TCEEEEEET
T ss_pred             EEEEEcCCC----CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-CCEEEEEec
Confidence            011111111    124567889999999998765    34556678999999999997653 3  34445 456999998


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCCcccccccc
Q 003907          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ...                 .......   +...|..++|+|+++.+++++  .|++|+|||+........+.+|.
T Consensus       229 ~~~-----------------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          229 CSG-----------------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             TTC-----------------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             ccc-----------------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence            541                 1222222   234689999999999988765  79999999998766556677775

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.69  E-value=1.3e-15  Score=167.20  Aligned_cols=224  Identities=8%  Similarity=-0.039  Sum_probs=116.4

Q ss_pred             CCEEEEEECCCCeEEEEE-----e-CCCcEEEEEecC----------CeEEEEe-CCeEEEEECCCCceeEEEEecCCcc
Q 003907          172 PTAVRFYSFQSHCYEHVL-----R-FRSSVCMVRCSP----------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQ  234 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL-----~-f~s~V~sV~~s~----------~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~  234 (787)
                      +++|+|||+++++.....     + +...|.+|+|+|          ++||.+. |++|+|||+.+.+.+..+..+..+ 
T Consensus       110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~-  188 (393)
T 4gq1_A          110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP-  188 (393)
T ss_dssp             TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC-
T ss_pred             CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC-
Confidence            468999999999765432     2 346899999975          5788765 568999999988877777766553 


Q ss_pred             cCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccce
Q 003907          235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK  311 (787)
Q Consensus       235 ~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~k  311 (787)
                                  ...++++|   ++|+.++.+..     ...|+..++....                            
T Consensus       189 ------------v~~v~~~p~~~~~l~~~~~d~~-----v~~wd~~t~~~~~----------------------------  223 (393)
T 4gq1_A          189 ------------GISVQFRPSNPNQLIVGERNGN-----IRIFDWTLNLSAE----------------------------  223 (393)
T ss_dssp             ------------EEEEEEETTEEEEEEEEETTSE-----EEEEETTCCC-------------------------------
T ss_pred             ------------cEEEEECCCCCceEEecCCCCE-----EEEEECCCCcccc----------------------------
Confidence                        23567766   35666554321     1123322110000                            


Q ss_pred             eecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC-CCCCEEEEEEcC
Q 003907          312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD-PSGTLLVTASVY  390 (787)
Q Consensus       312 tls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS-pdG~lLATaS~d  390 (787)
                      .+...     +.. .                    .+ .+.-++...........+|...|.+++|+ |||++|++++.|
T Consensus       224 ~~~~~-----~~~-~--------------------~~-~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d  276 (393)
T 4gq1_A          224 ENSQT-----ELV-K--------------------NP-WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKS  276 (393)
T ss_dssp             ------------C-S--------------------CC-CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTT
T ss_pred             ccccc-----CCc-c--------------------cc-eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCC
Confidence            00000     000 0                    00 00000000011112335788999999996 899999999995


Q ss_pred             CCEEEEEeCCCCcccC-CCCCCccccCCc-ceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          391 GNNINIFRIMPSCMRS-GSGNHKYDWNSS-HVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~-~~g~~~~~~~~s-~~~l~~l~rG~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      + .++|||+....... ..+.....+... ........   ....+....|+|  |+.++++++.||+|+|||+.+....
T Consensus       277 ~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          277 G-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS---LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN  352 (393)
T ss_dssp             S-EEEEEEC-------------------CCSCSEEEEC---SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred             C-CEEEEECccCCCCceEeeecCccccEEEcccccccc---ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            5 59999986421100 000000000000 00001111   111122334444  5567788899999999999876555


Q ss_pred             cccccc
Q 003907          467 SGFQTL  472 (787)
Q Consensus       467 ~~~~~H  472 (787)
                      ..+..|
T Consensus       353 ~~~~~~  358 (393)
T 4gq1_A          353 SIPIQL  358 (393)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            445555

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.4e-15  Score=159.85  Aligned_cols=218  Identities=9%  Similarity=0.087  Sum_probs=142.8

Q ss_pred             EEEEecCc-EEEEEccC--------CCc-eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907           78 LLLGYQNG-FQVLDVED--------ASN-FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (787)
Q Consensus        78 L~lG~~~G-~qVWdv~~--------~~~-~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~  147 (787)
                      |++|..+| ++||+.+.        .++ +......|.++|.++.+.|..           ...+|+.++.         
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~s~---------  147 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEV-----------NTEYFIWADN---------  147 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC--------------CCEEEEEET---------
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCC-----------CCCEEEEEeC---------
Confidence            66666655 89997642        122 222333555889999988610           1226654331         


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEEEe-CCeEEEEECCCCc
Q 003907          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE  222 (787)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e  222 (787)
                                              +++|++||+++++.+..+..+  ..|.++++++  ++||+|. ++.|++||+.+++
T Consensus       148 ------------------------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          148 ------------------------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             ------------------------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             ------------------------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence                                    258999999999998777433  4799999988  6888765 5689999999998


Q ss_pred             ee-EEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907          223 NK-FSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (787)
Q Consensus       223 ~l-~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a  298 (787)
                      .+ .++.. |..+             ...++++|  ++||                                        
T Consensus       204 ~~~~~~~~~h~~~-------------v~~l~fs~~g~~l~----------------------------------------  230 (343)
T 3lrv_A          204 QASSRFPVDEEAK-------------IKEVKFADNGYWMV----------------------------------------  230 (343)
T ss_dssp             SCCEECCCCTTSC-------------EEEEEECTTSSEEE----------------------------------------
T ss_pred             CCccEEeccCCCC-------------EEEEEEeCCCCEEE----------------------------------------
Confidence            76 66654 4432             22344433  1221                                        


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeE--
Q 003907          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPIS--  373 (787)
Q Consensus       299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H~~pIs--  373 (787)
                                                                   .+. ++.|+|||+.+++.+..+..   |..++.  
T Consensus       231 ---------------------------------------------s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          231 ---------------------------------------------VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             ---------------------------------------------EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             ---------------------------------------------EEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence                                                         122 34899999998876655554   555665  


Q ss_pred             EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---CCCEEEEEe
Q 003907          374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---YSQWIAIVS  450 (787)
Q Consensus       374 aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp---Dg~~LAs~S  450 (787)
                      +++|+|+|++||+++..+..|+||++...                 ...++.      ..+..++|++   +++.|++++
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-----------------~~~~~~------~~~~~~~~~~~~~~~~~l~~~~  321 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK-----------------TKNWTK------DEESALCLQSDTADFTDMDVVC  321 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTT-----------------TCSEEE------EEEEECCC----CCCCEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEccc-----------------ccceEe------cCceeEecCccccccceeEEEe
Confidence            69999999999999984446999998431                 111222      2467889999   999999999


Q ss_pred             CCCeEEEEeCC
Q 003907          451 SKGTCHVFVLS  461 (787)
Q Consensus       451 ~dgTVhIwdl~  461 (787)
                      .|+++.++-..
T Consensus       322 ~d~~~~~~~~~  332 (343)
T 3lrv_A          322 GDGGIAAILKT  332 (343)
T ss_dssp             ETTEEEEEEEC
T ss_pred             cCCceEEEEec
Confidence            99999987543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.7e-15  Score=181.01  Aligned_cols=210  Identities=14%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 003907           99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY  178 (787)
Q Consensus        99 ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlW  178 (787)
                      .++..|.++|.++.+.|+.             .+|++.+.                                 +++|+||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg-------------~~latg~~---------------------------------dg~I~vw   36 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYG-------------KRLATCSS---------------------------------DKTIKIF   36 (753)
T ss_dssp             -----CCCCEEEECCCSSS-------------CCEEEEET---------------------------------TTEEEEE
T ss_pred             eecccCcceeEEEEECCCC-------------CeEEEEEC---------------------------------CCcEEEE
Confidence            5678899999999988742             25654321                                 2689999


Q ss_pred             ECC--CCeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccc
Q 003907          179 SFQ--SHCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       179 dlk--tg~~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      |+.  +++.+.++..+ +.|.+|++++    ++|+++. ++.|++||+.+++  ....+..|..+             ..
T Consensus        37 d~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V~  103 (753)
T 3jro_A           37 EVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------VN  103 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EE
T ss_pred             ecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------eE
Confidence            998  55677777644 6999999973    5677655 5689999998876  33333333221             12


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .++++|       +.                          .+.                                    
T Consensus       104 ~v~~sp-------~~--------------------------~~~------------------------------------  114 (753)
T 3jro_A          104 SVQWAP-------HE--------------------------YGP------------------------------------  114 (753)
T ss_dssp             EEEECC-------GG--------------------------GCS------------------------------------
T ss_pred             EEEECC-------CC--------------------------CCC------------------------------------
Confidence            233321       10                          000                                    


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECC-------------CCCEEEEEEcCCCE
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDP-------------SGTLLVTASVYGNN  393 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSp-------------dG~lLATaS~dG~~  393 (787)
                                  .++.+..||.|+|||+.++  .....+.+|..+|.+++|+|             +|.+|++++.||+ 
T Consensus       115 ------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-  181 (753)
T 3jro_A          115 ------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-  181 (753)
T ss_dssp             ------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC-
T ss_pred             ------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-
Confidence                        1123457899999999887  34556789999999999999             5999999999776 


Q ss_pred             EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEeCCCCC
Q 003907          394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       394 IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      |++||+...       .      .....+..+. + +...|.+++|+||   +++|++++.||+|+|||+....
T Consensus       182 I~iwd~~~~-------~------~~~~~~~~~~-~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          182 VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             EEEEeccCC-------c------ccceeeeeec-C-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            999998541       0      0012333333 3 3457999999999   9999999999999999998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.66  E-value=3.4e-14  Score=153.13  Aligned_cols=213  Identities=13%  Similarity=0.059  Sum_probs=145.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEE-EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~La-V~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|++||+++++.+..+..+..+.++++++  +.|+ ++ .++.|++||+.+++.+.++..+..              ..
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------------v~   77 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------PQ   77 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------EE
T ss_pred             CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--------------cc
Confidence            689999999999999999999999999988  4554 44 467899999999998887764332              24


Q ss_pred             eeEEcc--ceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          249 PMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                      .++++|  ++|++++.. ..     ...|+..+            +..+.                .+.       ....
T Consensus        78 ~~~~spdg~~l~~~~~~~~~-----v~v~d~~~------------~~~~~----------------~~~-------~~~~  117 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASST-----LSVIDTTS------------NTVAG----------------TVK-------TGKS  117 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTE-----EEEEETTT------------TEEEE----------------EEE-------CSSS
T ss_pred             ceEECCCCCEEEEEECCCCE-----EEEEECCC------------CeEEE----------------EEe-------CCCC
Confidence            678887  677665432 11     11122111            11110                000       0001


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR  405 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~  405 (787)
                      ...+.++++.+..   ...+..++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.++.++..|++||+..    
T Consensus       118 ~~~~~~s~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~----  189 (391)
T 1l0q_A          118 PLGLALSPDGKKL---YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVT----  189 (391)
T ss_dssp             EEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred             cceEEECCCCCEE---EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCC----
Confidence            1122333333321   1245678999999999999998888775 5699999999998854444455699999854    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEeCCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPF  463 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S---~dgTVhIwdl~~~  463 (787)
                         +          ..+..+..   ...+.+++|+|||++|++++   .+++|++||+...
T Consensus       190 ---~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          190 ---N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             ---T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ---C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence               2          34444432   24689999999999999998   6899999999754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=1.3e-13  Score=144.01  Aligned_cols=279  Identities=11%  Similarity=0.078  Sum_probs=163.6

Q ss_pred             eEEEEEecC-cEEEEEccCCCceeEeeeeccC--cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg--~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .+|+++..+ .+++||+.. +++...+.....  .+..+.+.|+             ...|++...+             
T Consensus         2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~v~~~~-------------   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPG-------------GRIAYATVNK-------------   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTT-------------SSEEEEEETT-------------
T ss_pred             cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCC-------------CCEEEEEeCC-------------
Confidence            356666554 599999954 555444443221  4677777764             1244443321             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-------------CC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT  211 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~-------------~~  211 (787)
                                         .+.|.+||+.+++.+..+....      .+..+++++  +.|+++.             ++
T Consensus        55 -------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             -------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence                               2589999999999999888754      677888886  5777773             57


Q ss_pred             eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC--cceeccccCCC--CCcCCC
Q 003907          212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN--SGRLSPQNLTP--SGVSPS  285 (787)
Q Consensus       212 ~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~--~g~~s~q~lt~--~~~s~s  285 (787)
                      +|++||+.+++.+..+.....              ...++++|  ++|++++....+++  .+... ..+..  ...+..
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  180 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTLV-EDKPIQSWEAETY  180 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEEE-EEECSTTTTTTTB
T ss_pred             eEEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcEe-eeeeccccCCCce
Confidence            899999999987776654222              13467887  67777754432221  11110 00000  000111


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeec-ccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE-E
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLS-KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S  363 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls-~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v-~  363 (787)
                      ++|++..+.+....+          +.+. -|......++                ..........|.+||+.+++.. .
T Consensus       181 ~s~dg~~l~~~~~~~----------~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          181 AQPDVLAVWNQHESS----------GVMATPFYTARKDID----------------PADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CCCBCCCCCCCCTTT----------TEEEEEEEEEBTTSC----------------TTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eCCCccEEeeeccCC----------Cceeeeeeccccccc----------------cccccccccceEEEeCCCCCceEe
Confidence            122211110000000          0000 0000000000                0000011126899999998764 3


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .+..|...+.+++|+|||++|+++  ++ .|.+||+..       +          ..+..+..+   ..+.+++|+|||
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg  291 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA--YN-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDG  291 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTS
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe--CC-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCC
Confidence            345677788999999999999988  24 599999853       2          344444432   347899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ++|++++.+++|++||+....
T Consensus       292 ~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          292 STVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CEEEEESBSSEEEEEETTTCC
T ss_pred             CEEEEEcCCCcEEEEECcCCc
Confidence            999999999999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.66  E-value=5.6e-15  Score=170.60  Aligned_cols=239  Identities=9%  Similarity=0.019  Sum_probs=154.9

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCC----C---Cc--cccCcEEEEEEcCCCCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC----E---GF--RKLHPFLLVVAGEDTNT  143 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~----d---~F--~~srpLLavV~~d~~~~  143 (787)
                      +++.+++++.++ ++  |...    .+.+..|.+.|..|+++|+.......    +   .+  ....+..++.-.     
T Consensus        26 DG~~iASas~D~TV~--d~~~----~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS-----   94 (588)
T 2j04_A           26 DGTLYLTTFPDISIG--QPKY----AKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS-----   94 (588)
T ss_dssp             TSCEEEECSSSEEEE--EECC----CSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC-----
T ss_pred             CCCEEEEEcCCceee--cccc----cceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC-----
Confidence            688999988887 66  6432    24446788889999999887322100    0   11  111112111110     


Q ss_pred             CCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-CCeEE
Q 003907          144 LAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-ATQIY  214 (787)
Q Consensus       144 ~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~-~~~I~  214 (787)
                                   .+|.+-.    +...+++|++||.++  ++..+. +.      .|.+|+|+|  ++||+|. +++|+
T Consensus        95 -------------PdG~~LA----s~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           95 -------------PIDDWMA----VLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             -------------SSSSCEE----EEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             -------------CCCCEEE----EEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence                         1111100    011347899999644  777777 54      499999998  7888866 56899


Q ss_pred             EEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907          215 CFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (787)
Q Consensus       215 iwD~~T~e~-------l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s  287 (787)
                      |||+.+++.       +.++..+...    +.     .+...++++|                                 
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~g----h~-----~~V~sVawSP---------------------------------  192 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAG----SK-----DWVTHIVWYE---------------------------------  192 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTT----CC-----CCEEEEEEET---------------------------------
T ss_pred             EEECCCCccccccceeeeeeeccccc----cc-----ccEEEEEEcC---------------------------------
Confidence            999998753       4555432210    00     0012223322                                 


Q ss_pred             CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc---EEEE
Q 003907          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQ  364 (787)
Q Consensus       288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~  364 (787)
                       + | +                                                 +.++.|++|++||+.+++   ...+
T Consensus       193 -d-g-L-------------------------------------------------aass~D~tVrlWd~~~~~~~~~~~t  220 (588)
T 2j04_A          193 -D-V-L-------------------------------------------------VAALSNNSVFSMTVSASSHQPVSRM  220 (588)
T ss_dssp             -T-E-E-------------------------------------------------EEEETTCCEEEECCCSSSSCCCEEE
T ss_pred             -C-c-E-------------------------------------------------EEEeCCCeEEEEECCCCccccceee
Confidence             1 1 1                                                 122458899999998877   3456


Q ss_pred             e-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--cc
Q 003907          365 F-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SH  441 (787)
Q Consensus       365 ~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--Sp  441 (787)
                      + .+|...|.+++|+  |+.||+++. + .|++||+..       +           ++..+..| +.+.|++++|  ||
T Consensus       221 L~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s~  277 (588)
T 2j04_A          221 IQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHEK  277 (588)
T ss_dssp             EECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTCS
T ss_pred             ecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeCC
Confidence            7 4899999999999  799999984 5 699999853       1           34344446 5678999999  99


Q ss_pred             CCCEEEEEeCCCeEEEEeCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~  461 (787)
                      |++.|++++.||+ +||.++
T Consensus       278 d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          278 ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SCEEEEECSSCEE-EEEESS
T ss_pred             CCCEEEEEcCCCC-EEEeec
Confidence            9999999999999 999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.64  E-value=6.7e-14  Score=161.70  Aligned_cols=320  Identities=11%  Similarity=0.087  Sum_probs=187.3

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .++++++++.++ +.|||.+ .+++...+..+.. +..+.+.|+.             .+|++...              
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spdg-------------~~l~v~~~--------------  198 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASG-------------RYLLVIGR--------------  198 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTTS-------------CEEEEEET--------------
T ss_pred             CCEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCCC-------------CEEEEECC--------------
Confidence            367888888776 9999995 4667666664333 8888888752             25655332              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCcEEEEEecC------CeEEEEe--CCeEEEEECCCCc
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP------RIVAVGL--ATQIYCFDALTLE  222 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdl--ktg~~v~tL~f~s~V~sV~~s~------~~LaV~~--~~~I~iwD~~T~e  222 (787)
                                         .++|++||+  ++++++.++.....+..|++++      ++|+++.  +++|.+||..|++
T Consensus       199 -------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          199 -------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             -------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             -------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence                               158999999  8999999999877889999986      5777764  5789999999999


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCc--eecCcc--e-eccccC--CCCCcCCCcCCCCCc
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTL--LLSNSG--R-LSPQNL--TPSGVSPSTSPGGSS  292 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~--~l~~~g--~-~s~q~l--t~~~~s~s~sp~~g~  292 (787)
                      .+.++.+...... .+.+.. ......++++|   ++++....+.  .+++..  . .....+  ........++|++..
T Consensus       260 ~~~~i~~~g~~~~-~~~~~~-~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          260 PKQIVSTRGMTVD-TQTYHP-EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             EEEEEECCEECSS-SCCEES-CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred             cceeecccCcccC-cccccc-CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence            9998875321000 000000 00123456665   3444433221  111110  0 000000  011122345666664


Q ss_pred             eeEeeehhhhhhhhcccceeecccccccCCCCCC----CCcc-cCCccccccccccccC-CCceEEEEECCC-------C
Q 003907          293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS----SPVS-PNSVWKVGRHAGADMD-NAGIVVVKDFVT-------R  359 (787)
Q Consensus       293 lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~----~~~s-~s~~~~~~~~~~~s~~-~dG~V~IwDl~s-------~  359 (787)
                      +.+-...+....+.    ..-++.+....+.+..    .... ..++...   ..+++. .+++|.|||+.+       .
T Consensus       338 l~va~~~~~~v~v~----D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          338 FMTAANNSNKVAVI----DSKDRRLSALVDVGKTPHPGRGANFVHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             EEEEEGGGTEEEEE----ETTTTEEEEEEECSSSBCCTTCEEEEETTTEE---EEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             EEEEecCCCeEEEE----ECCCCeEEEeeccCCCCCCCCCcccCCCCCcc---EEEeccCCCceEEEEEeCCCCCchhcC
Confidence            43222111111111    0001111111111100    0000 1122111   122333 579999999998       8


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEc---C---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEE-Eec-----
Q 003907          360 AIISQFKAHTSPISALCFDPSGTLLVTASV---Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-LHR-----  427 (787)
Q Consensus       360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---d---G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~-l~r-----  427 (787)
                      +++.++..|...+..|+|+|+|++|++++.   |   +..|.|||+.+.                 ..+++ +.-     
T Consensus       411 ~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----------------~~~~~~~~v~~~~~  473 (543)
T 1nir_A          411 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----------------DAKYQVLPIAEWAD  473 (543)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----------------TSCCEEECHHHHHC
T ss_pred             eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----------------CCCeEEeechhhcc
Confidence            999999999999999999999999999872   1   335999999652                 12222 110     


Q ss_pred             -ccccccEEEEEEccCCCEEEEE-----eCCCeEEEEeCCCCCCcc
Q 003907          428 -GITSATIQDICFSHYSQWIAIV-----SSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       428 -G~~~a~I~slaFSpDg~~LAs~-----S~dgTVhIwdl~~~gg~~  467 (787)
                       +.....+..++|+|||++|+++     +.+++|.|||..+.....
T Consensus       474 ~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          474 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence             1112468999999999999977     347999999988765433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.64  E-value=7e-14  Score=147.17  Aligned_cols=274  Identities=7%  Similarity=-0.013  Sum_probs=166.6

Q ss_pred             CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +.+++++..++ +.+||.+. +++...+..+..++ .+.+.|+.             ..|+++..+              
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~~--------------   60 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDC-------------SNVVVTSDF--------------   60 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSS-------------CEEEEEEST--------------
T ss_pred             CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCC-------------CEEEEEeCC--------------
Confidence            56677776655 99999954 66666666555566 88887642             245443321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCcEEE-EEecC--CeEEEEeCC----eEEEEECCCCceeE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSP--RIVAVGLAT----QIYCFDALTLENKF  225 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~s~V~s-V~~s~--~~LaV~~~~----~I~iwD~~T~e~l~  225 (787)
                                        .++|.+||+++++. +..+........ +++++  ++|+++..+    .|++||+.+++.+.
T Consensus        61 ------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           61 ------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             ------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred             ------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence                              25899999999997 777776655555 88887  577766655    89999999998877


Q ss_pred             EEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s  302 (787)
                      ++.....|              ..++++|  ++|.++... ..    ....|+.-.           .+.+... .    
T Consensus       123 ~~~~~~~~--------------~~~~~spdg~~l~~~~~~~~~----~i~~~~~~~-----------~g~~~~~-~----  168 (331)
T 3u4y_A          123 TIPIPYDA--------------VGIAISPNGNGLILIDRSSAN----TVRRFKIDA-----------DGVLFDT-G----  168 (331)
T ss_dssp             EEECCTTE--------------EEEEECTTSSCEEEEEETTTT----EEEEEEECT-----------TCCEEEE-E----
T ss_pred             EEECCCCc--------------cceEECCCCCEEEEEecCCCc----eEEEEEECC-----------CCcEeec-C----
Confidence            76543322              4578888  556554321 00    000111000           0100000 0    


Q ss_pred             hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE---EEEeccCCCCeEEEEECC
Q 003907          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDP  379 (787)
Q Consensus       303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~---v~~~~aH~~pIsaLaFSp  379 (787)
                             .+.       +........+.++++++...   .....++.|.+||+.+++.   +..+..+ ..+..++|+|
T Consensus       169 -------~~~-------~~~~~~~~~~~~spdg~~l~---v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp  230 (331)
T 3u4y_A          169 -------QEF-------ISGGTRPFNITFTPDGNFAF---VANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR  230 (331)
T ss_dssp             -------EEE-------ECSSSSEEEEEECTTSSEEE---EEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred             -------Ccc-------ccCCCCccceEECCCCCEEE---EEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence                   000       00011112233444443221   2334578999999999887   7777755 5668899999


Q ss_pred             CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc--ccc---cEEEEEEccCCCEEEEEeC-CC
Q 003907          380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TSA---TIQDICFSHYSQWIAIVSS-KG  453 (787)
Q Consensus       380 dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~--~~a---~I~slaFSpDg~~LAs~S~-dg  453 (787)
                      ||++|+.++..+..|.+||+..       +.        ...+..+..+.  ...   ...+++|+|||++|++++. ++
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLS-------GT--------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTT-------TE--------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             CCCEEEEEEcCCCEEEEEECCC-------Cc--------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            9998877766555699999854       20        11233333221  111   1356899999999876655 56


Q ss_pred             eEEEEeCCC
Q 003907          454 TCHVFVLSP  462 (787)
Q Consensus       454 TVhIwdl~~  462 (787)
                      +|.|||+..
T Consensus       296 ~v~v~d~~~  304 (331)
T 3u4y_A          296 ELKVFTISG  304 (331)
T ss_dssp             EEEEEETTS
T ss_pred             cEEEEEecC
Confidence            999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.3e-14  Score=164.25  Aligned_cols=234  Identities=11%  Similarity=0.096  Sum_probs=151.9

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCc-----EEEEEEecCCCCCCCCCCcccc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~-----V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      .+.|.-+.|..       +++.|+++..+| ++|||.+.   +...+. |+.+     |.++++.|+.           +
T Consensus        85 ~~~V~~vawSP-------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG-----------~  142 (588)
T 2j04_A           85 VCYPRVCKPSP-------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE-----------S  142 (588)
T ss_dssp             SCCEEEEEECS-------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-----------S
T ss_pred             CCcEEEEEECC-------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-----------C
Confidence            45577777742       567788888776 99999643   566666 7764     9999999862           2


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeCC-----CcEEE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRFR-----SSVCM  197 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-------~v~tL~f~-----s~V~s  197 (787)
                        +||+.+.                                 +++|+|||++++.       .+.+++.+     +.|++
T Consensus       143 --~LAsgs~---------------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s  187 (588)
T 2j04_A          143 --SIVVGNE---------------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH  187 (588)
T ss_dssp             --CEEEEET---------------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred             --EEEEEcC---------------------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence              6766331                                 2699999999986       47777532     48999


Q ss_pred             EEecCCeEEE-EeCCeEEEEECCCCcee---EEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907          198 VRCSPRIVAV-GLATQIYCFDALTLENK---FSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (787)
Q Consensus       198 V~~s~~~LaV-~~~~~I~iwD~~T~e~l---~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~  272 (787)
                      |+++|+-|++ +.++.|++||+.+.+..   +++. .|...             ...+++       .+ +.        
T Consensus       188 VawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~-------------V~svaF-------sg-~~--------  238 (588)
T 2j04_A          188 IVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK-------------ITDLKI-------VD-YK--------  238 (588)
T ss_dssp             EEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC-------------CCCEEE-------ET-TE--------
T ss_pred             EEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCc-------------EEEEEE-------EC-CE--------
Confidence            9999854555 55678999999877632   3443 22110             122333       11 10        


Q ss_pred             ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (787)
Q Consensus       273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~  352 (787)
                                                                                           ++++. +|+|+
T Consensus       239 ---------------------------------------------------------------------LASa~-~~tIk  248 (588)
T 2j04_A          239 ---------------------------------------------------------------------VVLTC-PGYVH  248 (588)
T ss_dssp             ---------------------------------------------------------------------EEEEC-SSEEE
T ss_pred             ---------------------------------------------------------------------EEEEe-CCeEE
Confidence                                                                                 01122 58999


Q ss_pred             EEECCCCcEEEEeccCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC--c-----cccCCcceEEE
Q 003907          353 VKDFVTRAIISQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH--K-----YDWNSSHVHLY  423 (787)
Q Consensus       353 IwDl~s~~~v~~~~aH~~pIsaLaF--SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~--~-----~~~~~s~~~l~  423 (787)
                      +||+.+++......+|...|..++|  +|||+.|++|+++|+  +||..... ..+..+..  .     .-|......+.
T Consensus       249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~-~~spd~~l~a~~d~~v~lW~~~g~~l~  325 (588)
T 2j04_A          249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDEL-HVTADNIIAPYLEKKFKKWSTIWNEFN  325 (588)
T ss_dssp             EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSE-EEECCCSSHHHHHHHHHHTTTTTTSSS
T ss_pred             EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccE-EECCCceEEEEcCCEEEEEECCCCcee
Confidence            9999988774444489999999999  999999999999775  99987321 01001110  0     00111111121


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      .+ .+  ...|++++|||||+.||+++.
T Consensus       326 ~~-~~--~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          326 NY-ET--TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SS-CC--EEEEEEEEECTTSSEEEEEEE
T ss_pred             ee-cc--ceEEEEEEECCCCCEEEEEEe
Confidence            11 11  245999999999999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.59  E-value=2.5e-13  Score=150.82  Aligned_cols=172  Identities=18%  Similarity=0.155  Sum_probs=120.7

Q ss_pred             CEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEe-CC---eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-AT---QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL-~f~s~V~sV~~s~--~~LaV~~-~~---~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      ++|++||+..++ +..+ .....|.+++++|  +.|+.+. ++   .|++||+.+++.. .+..++..            
T Consensus       159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~------------  224 (415)
T 2hqs_A          159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------  224 (415)
T ss_dssp             EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC------------
T ss_pred             ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCc------------
Confidence            689999998654 4444 4567999999998  5677654 33   7999999998764 44443321            


Q ss_pred             ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                       ...++++|  ++||+....                                                            
T Consensus       225 -~~~~~~spdg~~la~~~~~------------------------------------------------------------  243 (415)
T 2hqs_A          225 -NGAPAFSPDGSKLAFALSK------------------------------------------------------------  243 (415)
T ss_dssp             -EEEEEECTTSSEEEEEECT------------------------------------------------------------
T ss_pred             -ccCEEEcCCCCEEEEEEec------------------------------------------------------------
Confidence             23456655  455543210                                                            


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCC
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMP  401 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~  401 (787)
                                            +.+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.++.  .|.+||+..
T Consensus       244 ----------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          244 ----------------------TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             ----------------------TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             ----------------------CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence                                  1134689999998875 678889999999999999999999887443  466667743


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCC
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP  462 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~  462 (787)
                             +           ....+..  +...+.+++|||||++|++++.+   .+|.+||+..
T Consensus       301 -------~-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          301 -------G-----------APQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             -------S-----------CCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             -------C-----------CEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence                   2           1122211  22358899999999999998875   5899999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.57  E-value=7.4e-13  Score=138.64  Aligned_cols=279  Identities=12%  Similarity=0.067  Sum_probs=155.1

Q ss_pred             eEEEEEec-CcEEEEEccCCCceeEee-eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           76 QVLLLGYQ-NGFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        76 ~vL~lG~~-~G~qVWdv~~~~~~~ell-s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      .+++.++. +.+++||++..+....+. -.+.+.+..+++.|+             ..+|+++..+              
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~--------------   58 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-------------KRYLYVGVRP--------------   58 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-------------SSEEEEEETT--------------
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-------------CCEEEEeecC--------------
Confidence            34444354 459999997555443332 234567888888864             2255553321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCC---c
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTL---E  222 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlk--tg~--~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~---e  222 (787)
                                        .++|++|++.  +++  .+..+.....+..+++++  +.|+++.  ++.|++||+.++   +
T Consensus        59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence                              1589999997  665  455666666888899987  5566554  457999998433   3


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec-CCceecCcceeccccCCCCCcCCCcCCCCCceeEeeeh
Q 003907          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (787)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas-~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~  299 (787)
                      ....+.....              ...++++|  ++|+.+. .+..     ...|+.-+           .+.+....  
T Consensus       121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~-----------~~~~~~~~--  168 (343)
T 1ri6_A          121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDR-----ICLFTVSD-----------DGHLVAQD--  168 (343)
T ss_dssp             EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTE-----EEEEEECT-----------TSCEEEEE--
T ss_pred             ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCE-----EEEEEecC-----------CCceeeec--
Confidence            3333322221              23577887  5666554 2110     01111110           01000000  


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC--CcE--EEEec---cC---C
Q 003907          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---AH---T  369 (787)
Q Consensus       300 d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s--~~~--v~~~~---aH---~  369 (787)
                             .   ..+.     .........+.++++++...   .....++.|.+||+..  ++.  ...+.   .+   .
T Consensus       169 -------~---~~~~-----~~~~~~~~~~~~~pdg~~l~---~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          169 -------P---AEVT-----TVEGAGPRHMVFHPNEQYAY---CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             -------E---EEEE-----CSTTCCEEEEEECTTSSEEE---EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             -------c---cccc-----cCCCCCcceEEECCCCCEEE---EEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence                   0   0000     00000111233344433221   1234678999999953  332  22222   11   2


Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ..+.+++|+|+|++|+.+...+..|++||+...     .+        ....+..+..+   ..+.+++|+|||++|+++
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEEEEe
Confidence            356789999999988766644567999998531     01        11233334322   237889999999999988


Q ss_pred             e-CCCeEEEEeCCCCCC
Q 003907          450 S-SKGTCHVFVLSPFGG  465 (787)
Q Consensus       450 S-~dgTVhIwdl~~~gg  465 (787)
                      + .++++.||+++...+
T Consensus       295 ~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          295 GQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             CTTTCEEEEEEEETTTT
T ss_pred             cCCCCeEEEEEEcCCCc
Confidence            8 689999998876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=6e-13  Score=135.21  Aligned_cols=218  Identities=8%  Similarity=0.018  Sum_probs=139.2

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +++|++||+.+++......+...|.++++++  ++|+++.++.|++||+.+ ++.......+...            ...
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~   88 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN   88 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence            4799999999999887777888999999988  688888889999999998 7654333222110            134


Q ss_pred             eeEEcc--ceEEEecCC----ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          249 PMAVGP--RWLAYASNT----LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       249 ~lAlsp--r~LAyas~~----~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                      .++++|  ++|+++...    ..++     .++.-+                             +..+.+.       .
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~-----~~~~~~-----------------------------~~~~~~~-------~  127 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIY-----LLPSTG-----------------------------GTPRLMT-------K  127 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEE-----EEETTC-----------------------------CCCEECC-------S
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEE-----EEECCC-----------------------------CceEEee-------c
Confidence            578888  788887632    1110     000000                             0000000       0


Q ss_pred             CCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                      ........++++.+...   ..+..++.++||++. .......+..|...+.+++|+|+|++|+.++..+..++||++..
T Consensus       128 ~~~~~~~~~spdg~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~  204 (297)
T 2ojh_A          128 NLPSYWHGWSPDGKSFT---YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV  204 (297)
T ss_dssp             SSSEEEEEECTTSSEEE---EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCccceEECCCCCEEE---EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence            00011112333332211   134567888999853 22345677788899999999999999888775344589998743


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CeEEEEeCCCC
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPF  463 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-----------gTVhIwdl~~~  463 (787)
                      .      +          ..+..+..  +...+.+++|+|||++|++++.+           +.+.+||+...
T Consensus       205 ~------~----------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          205 D------G----------SSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             T------S----------SCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             C------C----------CCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            1      1          13333332  22468899999999999999876           56999998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.53  E-value=2e-11  Score=128.71  Aligned_cols=174  Identities=13%  Similarity=0.098  Sum_probs=122.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCC----------cEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG  237 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s----------~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~  237 (787)
                      +.|.+||+++++.+.++....          .+..+.+++  +.|+++.   +..|++||+.+++....+......    
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----  186 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM----  186 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence            589999999999999998753          268888977  5666654   457999999999877666421110    


Q ss_pred             CCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907          238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC  317 (787)
Q Consensus       238 ~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~  317 (787)
                               ...++++|       +                           +..++                       
T Consensus       187 ---------~~~~~~s~-------d---------------------------g~~l~-----------------------  200 (353)
T 3vgz_A          187 ---------STGLALDS-------E---------------------------GKRLY-----------------------  200 (353)
T ss_dssp             ---------CCCCEEET-------T---------------------------TTEEE-----------------------
T ss_pred             ---------cceEEECC-------C---------------------------CCEEE-----------------------
Confidence                     01233322       1                           01000                       


Q ss_pred             cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCCCE
Q 003907          318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYGNN  393 (787)
Q Consensus       318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a----H~~pIsaLaFSpdG~lLATaS~dG~~  393 (787)
                                                .+..++.|.+||+.+++.+..+..    +...+..++|+|+|++|+.++.++..
T Consensus       201 --------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          201 --------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE  254 (353)
T ss_dssp             --------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred             --------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence                                      112367889999999998887764    56678899999999988888876678


Q ss_pred             EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907          394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       394 IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~  463 (787)
                      |.+||+..       +          ..+..+..+.    -..++|+|||++|++++ .+++|++||+...
T Consensus       255 v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          255 VLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            99999854       2          2444444332    24699999999776666 6899999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.48  E-value=2.1e-11  Score=129.77  Aligned_cols=105  Identities=11%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             CceEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          348 AGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       348 dG~V~IwDl~s--~~~--v~~~~aH~------~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      ++.|.+||+..  ++.  +..+..+.      ..+..++|+|||++|+.+...+..|.|||+...      |        
T Consensus       208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g--------  273 (347)
T 3hfq_A          208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G--------  273 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--------
T ss_pred             CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--------
Confidence            45677777653  332  22333222      348899999999988655544556999998531      1        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCCCCccc
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDSG  468 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~gg~~~  468 (787)
                      ....+..+..+  ...+.+++|+|||++|++++.+ ++|.||+++...+...
T Consensus       274 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          274 HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            11334444321  2347899999999999888764 8999998877655543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.47  E-value=3.2e-11  Score=126.69  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=65.1

Q ss_pred             EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907          353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (787)
Q Consensus       353 IwDl~s~~~-v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~  430 (787)
                      .+|..+++. +..+..+...+..++|+| +|++|+++  ++ .|.+||+..       +          ..+..+..+  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~--  294 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD--  294 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence            366666552 223345667889999999 99999988  35 599999854       2          344444433  


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                       ..+.+++|+|||++|++++.+++|++||+...
T Consensus       295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             -SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             -CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence             24678999999999999999999999999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.46  E-value=2.1e-12  Score=151.96  Aligned_cols=289  Identities=9%  Similarity=-0.016  Sum_probs=165.8

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEec-Cc------EEEEEccCCCceeEeeeeccCc---------------------
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NG------FQVLDVEDASNFNELVSKRDGP---------------------  107 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G------~qVWdv~~~~~~~ells~~dg~---------------------  107 (787)
                      .+.|..+.|..       +++.|+.+.. +|      +.+||++ .++...++..+...                     
T Consensus        36 ~~~~~~~~~Sp-------dG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           36 GPTLMKPKVAP-------DGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCCEEEEECT-------TSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------C
T ss_pred             CCCCCCceEec-------CCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            45677788853       4666666655 44      8999995 46677777654432                     


Q ss_pred             ---EEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-
Q 003907          108 ---VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-  183 (787)
Q Consensus       108 ---V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-  183 (787)
                         |..+.+.|+             ...|+++.                                  .++|.+||+.++ 
T Consensus       108 ~~~v~~~~~SpD-------------g~~l~~~~----------------------------------~~~i~~~d~~~~~  140 (741)
T 2ecf_A          108 MTGIVDYQWSPD-------------AQRLLFPL----------------------------------GGELYLYDLKQEG  140 (741)
T ss_dssp             CEESCCCEECTT-------------SSEEEEEE----------------------------------TTEEEEEESSSCS
T ss_pred             ccCcceeEECCC-------------CCEEEEEe----------------------------------CCcEEEEECCCCC
Confidence               556666654             22555432                                  148999999988 


Q ss_pred             --eEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcc-----ccccccceeEEcc
Q 003907          184 --CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV-----GINVGYGPMAVGP  254 (787)
Q Consensus       184 --~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~-----~~~~~~~~lAlsp  254 (787)
                        +..........+..++++|  +.||.+.+++|++||+.+++.............  .+..     ........++++|
T Consensus       141 ~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~~Sp  218 (741)
T 2ecf_A          141 KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG--NGIAEFVADEEMDRHTGYWWAP  218 (741)
T ss_dssp             TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE--ESCCCHHHHHHSCCCCSEEECT
T ss_pred             cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee--ccccceeeeeccccccceEECC
Confidence              5433223446899999998  688888888999999998864332211111000  0000     0000024578888


Q ss_pred             --ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC
Q 003907          255 --RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN  332 (787)
Q Consensus       255 --r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s  332 (787)
                        ++||++..+.-    ....+.  .. .    ..|.... .                ..+ .     ++.         
T Consensus       219 Dg~~l~~~~~d~~----~~~~~~--~~-~----~~p~~~~-~----------------~~~-~-----~~~---------  255 (741)
T 2ecf_A          219 DDSAIAYARIDES----PVPVQK--RY-E----VYADRTD-V----------------IEQ-R-----YPA---------  255 (741)
T ss_dssp             TSSCEEEEEEECT----TSCEEE--EE-E----ECSSCEE-E----------------EEE-E-----CCB---------
T ss_pred             CCCEEEEEEEcCC----CCceEe--cC-C----CCCCccc-c----------------eEe-e-----cCC---------
Confidence              78888753210    000000  00 0    0000000 0                000 0     000         


Q ss_pred             CccccccccccccCCCceEEEEECCC-CcEEEEec--cCCCCeEEEEECCCCCEEEEEEc----CCCEEEEEeCCCCccc
Q 003907          333 SVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMR  405 (787)
Q Consensus       333 ~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~----dG~~IrVWdi~~~~~~  405 (787)
                           .    ......-.|.+||+.+ ++......  .|...+..++| |||++|+.++.    +...|.+||+..    
T Consensus       256 -----~----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~----  321 (741)
T 2ecf_A          256 -----A----GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS----  321 (741)
T ss_dssp             -----T----TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT----
T ss_pred             -----C----CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC----
Confidence                 0    0001123688889988 77554443  48889999999 99999998764    234589999854    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccc---cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H  472 (787)
                         |          .....+. +....   .+.+++|||||++|++++.||+++||.++..++...+..|
T Consensus       322 ---g----------~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~  377 (741)
T 2ecf_A          322 ---N----------QQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG  377 (741)
T ss_dssp             ---C----------CEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred             ---C----------ceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence               2          1222221 11111   3468999999999999999999999998754443333333

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.46  E-value=1.8e-11  Score=131.27  Aligned_cols=106  Identities=11%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             CCceEEEEECCCCcE--EEEe---ccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          347 NAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~--v~~~---~aH~~pIsaLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      .++.|.+||+.+++.  +..+   ..|......++|+|||++|+++..+ +..|.||++.+.     .|        ...
T Consensus       231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~  297 (361)
T 3scy_A          231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NG--------TLT  297 (361)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TC--------CEE
T ss_pred             CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEE
Confidence            357888999887653  3333   3344567899999999999887775 467999998531     02        112


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCccc
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG  468 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~~~  468 (787)
                      .+..+..|   ..+.+++|||||++|++++ .+++|.||+++...+...
T Consensus       298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            33333322   3478899999999999988 679999999886655543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.42  E-value=5.2e-12  Score=147.93  Aligned_cols=222  Identities=14%  Similarity=0.078  Sum_probs=133.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-----CceeEEEEecCCcccCCCCcc---c
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-----LENKFSVLTYPVPQLAGQGAV---G  242 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T-----~e~l~tl~t~p~p~~~~~~~~---~  242 (787)
                      ++|++||+.+++..........+..++++|  +.||.+.+++|++||+.+     ++........... . ..+..   .
T Consensus       101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~-~~g~~~~~e  178 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET-L-VYGQAVHQR  178 (706)
T ss_dssp             TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT-E-EESSCCGGG
T ss_pred             CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCC-e-Ecccchhhh
Confidence            489999999998877666677888899988  688888888999999998     7643322111100 0 00000   0


Q ss_pred             cccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907          243 INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (787)
Q Consensus       243 ~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l  320 (787)
                      .......++++|  ++||++..+.    .+...+.....      . .. ....                .. .+     
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~----~~~~~~~~~~~------~-~~-~~~~----------------~~-~~-----  224 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQ----SMVKPTPIVDY------H-PL-EAES----------------KP-LY-----  224 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEEC----TTSCCEEEEEC------C-SS-SCEE----------------EE-EC-----
T ss_pred             hcCCCceEEECCCCCEEEEEEECC----CCCceEEeecc------C-CC-CCce----------------EE-ee-----
Confidence            000024578888  8898875220    00000000000      0 00 0000                00 00     


Q ss_pred             CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCC----CEE
Q 003907          321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYG----NNI  394 (787)
Q Consensus       321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG----~~I  394 (787)
                      +|.             .     .....+..|.+||+.+++......  .|...+.+++|+|||++|++++.++    ..|
T Consensus       225 y~~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v  286 (706)
T 2z3z_A          225 YPM-------------A-----GTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKV  286 (706)
T ss_dssp             CCB-------------T-----TSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEE
T ss_pred             CCC-------------C-----CCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEE
Confidence            000             0     012245789999999887654442  5778899999999999999988754    269


Q ss_pred             EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       395 rVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      .+||+..       |          ..+..+.......   .+.+++|||  ||++|++++.|++++||.++..++
T Consensus       287 ~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          287 NAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             EEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred             EEEECCC-------C----------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence            9999853       2          1222222111111   246789999  999999999999999999874443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.42  E-value=3.2e-12  Score=149.75  Aligned_cols=279  Identities=13%  Similarity=0.038  Sum_probs=159.3

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccC---cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg---~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~  150 (787)
                      ++++++.+.++.+++||++ .++...++..+..   .|..+++.|+.           +  .||.+..+..         
T Consensus        27 dg~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-----------~--~l~~~~~~~~---------   83 (723)
T 1xfd_A           27 DTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-----------E--YALFSYNVEP---------   83 (723)
T ss_dssp             SSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-----------S--EEEEEESCCC---------
T ss_pred             CCcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-----------C--EEEEEecCcc---------
Confidence            4556655444569999996 4667777776664   48999999852           2  6666443221         


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CcEEEEEecC--CeEEEEeCCeEEEEECCCCcee
Q 003907          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSP--RIVAVGLATQIYCFDALTLENK  224 (787)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~----s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l  224 (787)
                           ++.          ......|.+||+.+++. ..+...    ..|..++++|  +.||.+..++|++||+.+++..
T Consensus        84 -----~~~----------~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~  147 (723)
T 1xfd_A           84 -----IYQ----------HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI  147 (723)
T ss_dssp             -----CSS----------SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred             -----cee----------ecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence                 000          01246899999999886 344322    2388899998  6888888889999999998765


Q ss_pred             EEEEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEe
Q 003907          225 FSVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR  296 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~------~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~  296 (787)
                      .....+..... -.+.+.      .......++++|  ++|||+..+.    .....++.....          +     
T Consensus       148 ~~~~~~~~~~~-~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~----~~~~~~~~~~~~----------~-----  207 (723)
T 1xfd_A          148 RVVSTGKEGVI-YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND----SRVPIMELPTYT----------G-----  207 (723)
T ss_dssp             EEECCCBTTTE-EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC----TTSCEEEECCCS----------S-----
T ss_pred             EEecCCCCCce-ECcccceeEEEEeccCcceEEECCCCCEEEEEEECC----CccceEEeeccC----------C-----
Confidence            43332211100 000000      000114588888  7898875321    000000000000          0     


Q ss_pred             eehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC------CC
Q 003907          297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------TS  370 (787)
Q Consensus       297 ~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH------~~  370 (787)
                                            ...+.  .....+..++        ....+..|.+||+.+++....+..|      ..
T Consensus       208 ----------------------~~~~~--~~~~~~~~~G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          208 ----------------------SIYPT--VKPYHYPKAG--------SENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             ----------------------SSSCC--CEEEECCBTT--------SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ----------------------cCCCc--ceeccCCCCC--------CCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence                                  00000  0000000000        0122458999999998866667654      67


Q ss_pred             CeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEEEEccCC
Q 003907          371 PISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDICFSHYS  443 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I----~slaFSpDg  443 (787)
                      .+..++|||||++|++.+..+   ..|.+||+..       |          .....+. +.+...+    .+++|||||
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCCEECTTS
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCceEcCCC
Confidence            899999999999998876532   4689999853       2          1222221 1111222    378999999


Q ss_pred             CEEEEE--eCCC----eEEEEeCC
Q 003907          444 QWIAIV--SSKG----TCHVFVLS  461 (787)
Q Consensus       444 ~~LAs~--S~dg----TVhIwdl~  461 (787)
                      ++|+..  ..++    +.+||.++
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CeEEEEEecccCCCcceeEEEEEe
Confidence            988754  4667    66666555

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.42  E-value=1.5e-11  Score=124.92  Aligned_cols=233  Identities=11%  Similarity=0.055  Sum_probs=145.2

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~srpLLa  134 (787)
                      .+.|..+.|..       +++.|+.+.++.+.+||++..++...+...+ .+.|..+++.|+.             .+|+
T Consensus        41 ~~~v~~~~~sp-------dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-------------~~l~  100 (297)
T 2ojh_A           41 PELFEAPNWSP-------DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-------------ALYA  100 (297)
T ss_dssp             SSCCEEEEECT-------TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-------------SEEE
T ss_pred             CcceEeeEECC-------CCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC-------------CEEE
Confidence            44555566642       4678888888889999996425566666554 3677888888642             2666


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEE-EE-eC
Q 003907          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LA  210 (787)
Q Consensus       135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~La-V~-~~  210 (787)
                      ++..+..                             ....|.+|++.+++ ...+.....+..+++++  +.|+ ++ .+
T Consensus       101 ~~~~~~~-----------------------------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~  150 (297)
T 2ojh_A          101 ISDKVEF-----------------------------GKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRD  150 (297)
T ss_dssp             EEECTTT-----------------------------SSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEET
T ss_pred             EEEeCCC-----------------------------CcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCC
Confidence            5442110                             01467777777766 45565566789999987  5555 33 45


Q ss_pred             CeEEEEE--CCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          211 TQIYCFD--ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       211 ~~I~iwD--~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      +.+.||+  +.+++. ..+..++..             ...++++|  ++|+++.                         
T Consensus       151 ~~~~l~~~~~~~~~~-~~~~~~~~~-------------~~~~~~s~dg~~l~~~~-------------------------  191 (297)
T 2ojh_A          151 QVFDIYSMDIDSGVE-TRLTHGEGR-------------NDGPDYSPDGRWIYFNS-------------------------  191 (297)
T ss_dssp             TEEEEEEEETTTCCE-EECCCSSSC-------------EEEEEECTTSSEEEEEE-------------------------
T ss_pred             CceEEEEEECCCCcc-eEcccCCCc-------------cccceECCCCCEEEEEe-------------------------
Confidence            6677776  444432 222222110             12234433  2222221                         


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEe
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQF  365 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~  365 (787)
                                                                                 ..++.++||++. .+..+..+
T Consensus       192 -----------------------------------------------------------~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          192 -----------------------------------------------------------SRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             -----------------------------------------------------------CTTSSCEEEEEETTSSCEEEC
T ss_pred             -----------------------------------------------------------cCCCCccEEEECCCCCCcEEE
Confidence                                                                       124566677764 44566778


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ  435 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG----------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~  435 (787)
                      ..|...+.+++|+|+|++|++++.++          ..|.+||+..       +        ....+..+..  +...|.
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-------~--------~~~~~~~~~~--~~~~~~  275 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-------G--------NVETLFDLFG--GQGTMN  275 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS-------C--------SCEEEEEEEE--STTTSC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC-------C--------CceeeeccCC--CCcccc
Confidence            88888999999999999999988753          4589999853       2        1134444432  234588


Q ss_pred             EEEEccCCCEEEEEeCCC
Q 003907          436 DICFSHYSQWIAIVSSKG  453 (787)
Q Consensus       436 slaFSpDg~~LAs~S~dg  453 (787)
                      +++|+|||++|++++.+.
T Consensus       276 ~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          276 SPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCBCTTSSEEEEEEECC
T ss_pred             cceECCCCCEEEEEEecc
Confidence            899999999999888764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.39  E-value=2.1e-11  Score=136.66  Aligned_cols=103  Identities=11%  Similarity=0.140  Sum_probs=78.2

Q ss_pred             ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      ++..||+|+|||+.++..+....+|...|.+++|+|+|++||+++.||+ |+|||++.                  ....
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~~------------------~~~~  227 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPTL------------------QEKK  227 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTTC------------------CEEE
T ss_pred             EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccCC------------------cccc
Confidence            4567899999999998877777889999999999999999999999776 99999841                  1222


Q ss_pred             EEecc-----cccccEEEEEEccCCCEEEEEe-CCC------eEEEEeCCCCCC
Q 003907          424 KLHRG-----ITSATIQDICFSHYSQWIAIVS-SKG------TCHVFVLSPFGG  465 (787)
Q Consensus       424 ~l~rG-----~~~a~I~slaFSpDg~~LAs~S-~dg------TVhIwdl~~~gg  465 (787)
                      .+...     .+...|.+++|++++.++++.+ .+|      .+++|++...+.
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~  281 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE  281 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence            22211     1123699999999999886644 443      389999986544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.38  E-value=2.5e-10  Score=119.84  Aligned_cols=180  Identities=10%  Similarity=0.118  Sum_probs=119.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEEEe--CCeEEEEECCCCce-eEEEEecCCcccCCCCccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG  246 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~-l~tl~t~p~p~~~~~~~~~~~~~  246 (787)
                      ++|++||+.+++.+..+.... .+ .+++++  +.|+++.  +++|++||+.+++. ...+..+..|             
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------------   85 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS-------------   85 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred             CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence            689999999999999888754 55 899987  4555544  45899999999887 5555443332             


Q ss_pred             cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      ...++++|  ++|+ ...                                                              
T Consensus        86 ~~~~~~s~dg~~l~-~~~--------------------------------------------------------------  102 (331)
T 3u4y_A           86 MADVDITPDDQFAV-TVT--------------------------------------------------------------  102 (331)
T ss_dssp             CCCEEECTTSSEEE-ECC--------------------------------------------------------------
T ss_pred             ccceEECCCCCEEE-Eec--------------------------------------------------------------
Confidence            11134433  2222 110                                                              


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCc
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSC  403 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~-IrVWdi~~~~  403 (787)
                                         .....+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.++.. |.+|++... 
T Consensus       103 -------------------~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-  161 (331)
T 3u4y_A          103 -------------------GLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD-  161 (331)
T ss_dssp             -------------------CSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT-
T ss_pred             -------------------CCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC-
Confidence                               001124899999999998888876544 5899999999977666655455 999998541 


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (787)
Q Consensus       404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g  464 (787)
                           |. ..     ......+..   ...+..++|+|||++|++++ .+++|++||+....
T Consensus       162 -----g~-~~-----~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          162 -----GV-LF-----DTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             -----CC-EE-----EEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             -----Cc-Ee-----ecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence                 20 00     000111211   23478999999999766555 68999999987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.37  E-value=2.2e-11  Score=143.28  Aligned_cols=99  Identities=13%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             CCceEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~----pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .++.|.+||+.+++....+..|..    .+..++|+|||++|++++.+|. ++||.+...      +          . +
T Consensus       310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~----------~-~  371 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G----------K-A  371 (741)
T ss_dssp             SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S----------C-E
T ss_pred             CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C----------C-e
Confidence            357899999999988877776654    4578999999999999888775 788876421      2          2 3


Q ss_pred             EEEecccccccEEEE-EEccCCCEEEEEe-CCC--eEEEEeCCCCCC
Q 003907          423 YKLHRGITSATIQDI-CFSHYSQWIAIVS-SKG--TCHVFVLSPFGG  465 (787)
Q Consensus       423 ~~l~rG~~~a~I~sl-aFSpDg~~LAs~S-~dg--TVhIwdl~~~gg  465 (787)
                      ..+..+  ...|.++ +|||||++|+.++ .++  +++||+++..++
T Consensus       372 ~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          372 AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            334332  2457777 5999999886554 454  899999975444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.37  E-value=5e-10  Score=117.98  Aligned_cols=221  Identities=7%  Similarity=-0.004  Sum_probs=142.4

Q ss_pred             CCe-EEEEEecC-cEEEEEccCCCceeEeeeeccCc---------EEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCC
Q 003907           74 FKQ-VLLLGYQN-GFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN  142 (787)
Q Consensus        74 ~~~-vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~---------V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~  142 (787)
                      +++ +++++..+ .+.+||.+. +++...+..+++.         +..+.+.|+.           +  .|++...+   
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~--~l~~~~~~---  161 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-----------N--TVYISGIG---  161 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-----------T--EEEEEEES---
T ss_pred             CCCEEEEEecCCCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCC-----------C--EEEEEecC---
Confidence            344 55555544 499999954 5555555544322         5677877641           2  44442211   


Q ss_pred             CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEEC
Q 003907          143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDA  218 (787)
Q Consensus       143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~  218 (787)
                                                  .+++|.+||+++++.+..+.. ...+..+.+++  +.|+++. ++.|++||+
T Consensus       162 ----------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~  213 (353)
T 3vgz_A          162 ----------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT  213 (353)
T ss_dssp             ----------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred             ----------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence                                        125899999999999999984 34577888876  5676654 568999999


Q ss_pred             CCCceeEEEEecCC-cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907          219 LTLENKFSVLTYPV-PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (787)
Q Consensus       219 ~T~e~l~tl~t~p~-p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~  297 (787)
                      .+++.+..+..... +.          .....++++|       +.                           ..+.   
T Consensus       214 ~~~~~~~~~~~~~~~~~----------~~~~~~~~s~-------dg---------------------------~~l~---  246 (353)
T 3vgz_A          214 ADNKILSRKKLLDDGKE----------HFFINISLDT-------AR---------------------------QRAF---  246 (353)
T ss_dssp             TTTEEEEEEECCCSSSC----------CCEEEEEEET-------TT---------------------------TEEE---
T ss_pred             CCCeEEEEEEcCCCCCC----------cccceEEECC-------CC---------------------------CEEE---
Confidence            99987777654211 10          0011133322       11                           1000   


Q ss_pred             ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF  377 (787)
Q Consensus       298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF  377 (787)
                                                                   .....++.|.+||+.+++.+..+..+. + ..++|
T Consensus       247 ---------------------------------------------~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~  279 (353)
T 3vgz_A          247 ---------------------------------------------ITDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLF  279 (353)
T ss_dssp             ---------------------------------------------EEESSSSEEEEEETTTCCEEEEEECSS-C-CCEEE
T ss_pred             ---------------------------------------------EEeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEE
Confidence                                                         011235789999999999888887654 2 56999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003907          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (787)
Q Consensus       378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg  453 (787)
                      +|+|++|+.++..+..|.+||+..       +          ..+..+..+   ..+.+++|+|||++|+++..++
T Consensus       280 s~dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          280 NPARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence            999997777765566799999854       2          344444432   3579999999999888877664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.32  E-value=3.5e-11  Score=138.20  Aligned_cols=91  Identities=9%  Similarity=0.062  Sum_probs=69.7

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~-~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|.+||+.+++.. .+..|...+..++|||||++||+++.+|. .|.+||+..       |          ...  +..
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~--~~~  234 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE--DLE  234 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE--ECC
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE--Ecc
Confidence            46899999888754 77889999999999999999997776552 589999853       2          122  222


Q ss_pred             ccccccEEEEE--------EccCCCEEEEEeCCCeEEEEeC
Q 003907          428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       428 G~~~a~I~sla--------FSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      +. ...+.+++        |||||+++++++.|++++||++
T Consensus       235 ~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          235 LP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            22 22344455        9999999999999999999999

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.32  E-value=1.1e-10  Score=144.10  Aligned_cols=261  Identities=8%  Similarity=-0.035  Sum_probs=162.1

Q ss_pred             eEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        76 ~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      +++.++..+| ++||+++..+...+.+..+.+ +..+.+.|+.           +  .|+...                 
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG-----------~--~la~~~-----------------  263 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDG-----------R--RILFSK-----------------  263 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESS-----------S--CEEEEE-----------------
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCC-----------C--EEEEEe-----------------
Confidence            5666776655 899998765544455544443 4455777642           2  454421                 


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CcEEEEEec-C--CeEEEEeCCeEEEEECC
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCS-P--RIVAVGLATQIYCFDAL  219 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~------------s~V~sV~~s-~--~~LaV~~~~~I~iwD~~  219 (787)
                                       .+.|.+||+..++.. .+...            ..|.+++++ +  +.|+++....|++||+.
T Consensus       264 -----------------~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~  325 (1045)
T 1k32_A          264 -----------------GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS  325 (1045)
T ss_dssp             -----------------TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT
T ss_pred             -----------------CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC
Confidence                             147999999555443 55432            258899999 7  67888778899999998


Q ss_pred             CCceeEEEEecCCcccCCCCccccccccceeEEc-cceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907          220 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG-PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (787)
Q Consensus       220 T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls-pr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a  298 (787)
                      +++.. .+..++..            ....++++ .++|+|++.+..+++    .++.-+            +       
T Consensus       326 ~~~~~-~~~~~~~~------------~~~~~~~sdg~~l~~~s~~~~l~~----~~d~~~------------~-------  369 (1045)
T 1k32_A          326 GTYVL-KVPEPLRI------------RYVRRGGDTKVAFIHGTREGDFLG----IYDYRT------------G-------  369 (1045)
T ss_dssp             SSBEE-ECSCCSCE------------EEEEECSSSEEEEEEEETTEEEEE----EEETTT------------C-------
T ss_pred             CCceE-EccCCCcc------------eEEeeeEcCCCeEEEEECCCceEE----EEECCC------------C-------
Confidence            87633 23222210            01112222 256666654311110    011000            0       


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 003907          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD  378 (787)
Q Consensus       299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS  378 (787)
                                ..+.+..      .........++++++.    ++.+..++.|++||+.+++....+..|...|.+++||
T Consensus       370 ----------~~~~l~~------~~~~~~~~~~SpDG~~----la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S  429 (1045)
T 1k32_A          370 ----------KAEKFEE------NLGNVFAMGVDRNGKF----AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  429 (1045)
T ss_dssp             ----------CEEECCC------CCCSEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             ----------CceEecC------CccceeeeEECCCCCE----EEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence                      0001100      0011122334444443    3455678899999999999888888999999999999


Q ss_pred             CCCCEEEEEEcCC---------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          379 PSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       379 pdG~lLATaS~dG---------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      |||++||+++.++         ..|++||+..       +           .+..+..  +...+.+++|||||++|+.+
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R-----------KIFAATT--ENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T-----------EEEECSC--SSSBEEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECCC-------C-----------cEEEeeC--CCcccCCceEcCCCCEEEEE
Confidence            9999999988744         4799999853       2           2334432  23457889999999999999


Q ss_pred             eCCCeEEEEeCC
Q 003907          450 SSKGTCHVFVLS  461 (787)
Q Consensus       450 S~dgTVhIwdl~  461 (787)
                      +.++...+|+..
T Consensus       490 s~~~~~~~~~~~  501 (1045)
T 1k32_A          490 SYRSLDPSPDRV  501 (1045)
T ss_dssp             ESCCCCCEECSS
T ss_pred             ecccCCcCcchh
Confidence            999999999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=2.3e-10  Score=123.75  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             CeEEEE-ECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 003907          371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---  441 (787)
Q Consensus       371 pIsaLa-FSpdG~lLATaS~dG~-----~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp---  441 (787)
                      .+..++ |+|||++|++++..+.     .|+||++...      |.        ...+..+... ....+..++|+|   
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW  319 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence            478999 9999999988776443     7999998421      21        0111111111 112356799999   


Q ss_pred             CCCEEEEEeCC-CeEEEEeCCCC
Q 003907          442 YSQWIAIVSSK-GTCHVFVLSPF  463 (787)
Q Consensus       442 Dg~~LAs~S~d-gTVhIwdl~~~  463 (787)
                      ||++|++++.+ ++|.||+++..
T Consensus       320 dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEEcCCCeEEEEEEchh
Confidence            89999999865 89999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.31  E-value=1.1e-09  Score=116.33  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CCceEEEEECC-CCcEE--EEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          347 NAGIVVVKDFV-TRAII--SQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       347 ~dG~V~IwDl~-s~~~v--~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .++.|.+||+. +++..  ..+..+. .....++|+|||++|+.++..+..|++|++...     .|        ....+
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~~  226 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQL  226 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEE
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEEe
Confidence            45689999988 45432  2233332 357789999999988887766778999998531     01        01122


Q ss_pred             EEEecccc----cccEEEEEEccCCCEEE-EEeCCCeEEEEeCCC
Q 003907          423 YKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~----~a~I~slaFSpDg~~LA-s~S~dgTVhIwdl~~  462 (787)
                      ..+.....    ...+..++|||||++|+ +...+++|.+|++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            22221111    03488999999999885 555689999999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.31  E-value=1.8e-09  Score=115.59  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             CCceEEEEECCCCc-------E------EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907          347 NAGIVVVKDFVTRA-------I------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       347 ~dG~V~IwDl~s~~-------~------v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      .++.|.+|++....       .      ......+......++|+|||++|+.++..+..|.+||+..       |    
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------g----  243 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-------G----  243 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-------T----
T ss_pred             CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-------C----
Confidence            35678888776433       1      1112233455789999999999988886566799999853       2    


Q ss_pred             ccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCC--CeEEEEeCCCCCC
Q 003907          414 DWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSK--GTCHVFVLSPFGG  465 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~LAs~S~d--gTVhIwdl~~~gg  465 (787)
                          ....+..+..... .....+++|||||++|+++..+  ++|.||+++...+
T Consensus       244 ----~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g  294 (361)
T 3scy_A          244 ----MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG  294 (361)
T ss_dssp             ----EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred             ----ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence                0122333322111 1236799999999999777654  8999999975433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.27  E-value=1.6e-10  Score=133.33  Aligned_cols=181  Identities=9%  Similarity=-0.022  Sum_probs=123.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE-eCCeEEEEEC--CCCceeEEEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDA--LTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~--~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++|.+||..+++++.++.....+..+++++  ++|+++ .++.|++||+  .+++.+.++.....               
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~---------------  223 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE---------------  223 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE---------------
T ss_pred             CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC---------------
Confidence            689999999999999998655699999988  677765 4678999999  88887777753211               


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                            |+.+|+.....                       +++..+++                                
T Consensus       224 ------p~~va~sp~~~-----------------------~dg~~l~v--------------------------------  242 (543)
T 1nir_A          224 ------ARSVESSKFKG-----------------------YEDRYTIA--------------------------------  242 (543)
T ss_dssp             ------EEEEEECCSTT-----------------------CTTTEEEE--------------------------------
T ss_pred             ------cceEEeCCCcC-----------------------CCCCEEEE--------------------------------
Confidence                  23344432000                       00010000                                


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC----------CC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----------TS-PISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH----------~~-pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                                      ....+++|.|||..+++++..+..+          .. .+.++.|+|++..++.+..++..|.+
T Consensus       243 ----------------~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v  306 (543)
T 1nir_A          243 ----------------GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  306 (543)
T ss_dssp             ----------------EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             ----------------EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence                            0113678999999999999888752          23 78999999987766555555567999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~  463 (787)
                      ||+...      .         ...+..+..+   ..+.+++|+|||++|++++ .+++|.|||+...
T Consensus       307 vd~~~~------~---------~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          307 VNYKDI------D---------NLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             EECTTS------S---------SCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEecCC------C---------cceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence            998541      0         0122233222   3477899999999876554 6899999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.27  E-value=1e-10  Score=144.36  Aligned_cols=268  Identities=13%  Similarity=0.019  Sum_probs=153.2

Q ss_pred             EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (787)
Q Consensus        86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (787)
                      .+||.....+++..+ ..|++.|..+.+.|+               .+++++..                          
T Consensus       185 ~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d---------------~l~~~~~~--------------------------  222 (1045)
T 1k32_A          185 GKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH---------------RIYFITDI--------------------------  222 (1045)
T ss_dssp             CEEEEEEETTEEEEE-ECCSSCCEEEEEETT---------------EEEEEECT--------------------------
T ss_pred             CCEEEECCCCCeEEC-cCCCCcccceEEeCC---------------EEEEEEec--------------------------
Confidence            577765444554444 788899999888752               23333321                          


Q ss_pred             CCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccc
Q 003907          166 GNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG  242 (787)
Q Consensus       166 ~~~~~~p~tVrlWdlkt-g~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~  242 (787)
                            +++++||.+.. +.....+..+..+..+.+++  +.|+.+.+..|++||+.+. .+..+..+.....  .....
T Consensus       223 ------dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~~~~~~~~--~~~~~  293 (1045)
T 1k32_A          223 ------DGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIEIGDLESP--EDRII  293 (1045)
T ss_dssp             ------TSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECCCCCCCBC--CSEEE
T ss_pred             ------cCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce-EeeeeccCccccc--ccccc
Confidence                  13456676532 33445555444455556655  7788888889999999444 3334433211000  00000


Q ss_pred             cccccceeEEc-c--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907          243 INVGYGPMAVG-P--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (787)
Q Consensus       243 ~~~~~~~lAls-p--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~  319 (787)
                      .......++++ |  ++||++....+.      .++.-.            +..                 +.+..+   
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~------~~~~~~------------~~~-----------------~~~~~~---  335 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAF------IQDVSG------------TYV-----------------LKVPEP---  335 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEE------EECTTS------------SBE-----------------EECSCC---
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEE------EEcCCC------------Cce-----------------EEccCC---
Confidence            00023568899 8  788887643111      111100            000                 000000   


Q ss_pred             cCCCC-CCCCcccCCccccccccccccCCCceEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 003907          320 LLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF  397 (787)
Q Consensus       320 l~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~-IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVW  397 (787)
                         .+ ......++ +++    .++....++.+. +||+.+++.. .+..|...+.+++|||||++||+++.++ .|++|
T Consensus       336 ---~~~~~~~~~~s-dg~----~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~  405 (1045)
T 1k32_A          336 ---LRIRYVRRGGD-TKV----AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTV  405 (1045)
T ss_dssp             ---SCEEEEEECSS-SEE----EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEE
T ss_pred             ---CcceEEeeeEc-CCC----eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEE
Confidence               00 00111222 222    122233366788 8999887654 4458889999999999999999999865 59999


Q ss_pred             eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC----------eEEEEeCCCCCCcc
Q 003907          398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSPFGGDS  467 (787)
Q Consensus       398 di~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----------TVhIwdl~~~gg~~  467 (787)
                      |+..       |          ... .+..+ +...|.+++|||||++|++++.++          +|++||+.... ..
T Consensus       406 d~~t-------g----------~~~-~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~  465 (1045)
T 1k32_A          406 DLET-------G----------KPT-VIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF  465 (1045)
T ss_dssp             ETTT-------C----------CEE-EEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred             ECCC-------C----------ceE-EeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence            9854       2          122 22223 234588999999999999988754          99999997532 33


Q ss_pred             ccccc
Q 003907          468 GFQTL  472 (787)
Q Consensus       468 ~~~~H  472 (787)
                      .+..|
T Consensus       466 ~l~~~  470 (1045)
T 1k32_A          466 AATTE  470 (1045)
T ss_dssp             ECSCS
T ss_pred             EeeCC
Confidence            44444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.26  E-value=9.2e-10  Score=128.87  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             CCceEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          347 NAGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       347 ~dG~V~IwDl~-s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~----~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      .+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.++.    .|..||+..       +           
T Consensus       331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~-----------  392 (706)
T 2z3z_A          331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G-----------  392 (706)
T ss_dssp             TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C-----------
T ss_pred             cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C-----------
Confidence            45667777765 56778888889888887 899999998877766543    455555532       1           


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCCC
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF  463 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~~  463 (787)
                      .+..+.   +...+.+++|||||++|+.+..+    +++++||+...
T Consensus       393 ~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          393 KTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             CCEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             Cceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            112221   22358899999999999877544    56999998653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.26  E-value=5.3e-10  Score=116.82  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=70.6

Q ss_pred             CCceEEEEEC---CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          347 NAGIVVVKDF---VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       347 ~dG~V~IwDl---~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      .++.|.+||+   ...+.+..+..+ ..+.+++|+|+|++|++++..+..|++||+...      +        ....+.
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~--------~~~~~~  168 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD------G--------HLVAQD  168 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------S--------CEEEEE
T ss_pred             CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC------C--------ceeeec
Confidence            3678999998   444455555554 458899999999999888833456999998531      1        011221


Q ss_pred             --EEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCC
Q 003907          424 --KLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG  465 (787)
Q Consensus       424 --~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg  465 (787)
                        .+.. .....+.+++|+|||++|++++ .++++++|+++...+
T Consensus       169 ~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g  212 (343)
T 1ri6_A          169 PAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  212 (343)
T ss_dssp             EEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             cccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence              2221 1223588999999999876665 789999999976444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.25  E-value=1.6e-10  Score=135.39  Aligned_cols=103  Identities=12%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             CCceEEEEECCCCcEEEEecc-CCCCeE----EEEECCCCCEEEEE-EcCCC------EEEEEeCCCCcccCCCCCCccc
Q 003907          347 NAGIVVVKDFVTRAIISQFKA-HTSPIS----ALCFDPSGTLLVTA-SVYGN------NINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~a-H~~pIs----aLaFSpdG~lLATa-S~dG~------~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      .+..|.+||+.+++....+.. |...+.    .++|||||+.|+.+ +.++.      .|.+||+...      +.    
T Consensus       278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~----  347 (723)
T 1xfd_A          278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS----  347 (723)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS----
T ss_pred             CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC----
Confidence            456899999999987776654 444443    78999999988865 44343      3555662110      10    


Q ss_pred             cCCcceEEEEEecccccccEEE-EEEccCCCEEEEEeCC---CeEEEEeCCCCCC
Q 003907          415 WNSSHVHLYKLHRGITSATIQD-ICFSHYSQWIAIVSSK---GTCHVFVLSPFGG  465 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~s-laFSpDg~~LAs~S~d---gTVhIwdl~~~gg  465 (787)
                          ..+...+..|  ...+.. ++|||||++|+..+.+   ++++||+++..++
T Consensus       348 ----~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          348 ----NDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             ----SCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             ----ccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence                0001122222  123444 6999999999877665   8999999986543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.24  E-value=7.6e-10  Score=115.34  Aligned_cols=217  Identities=11%  Similarity=0.015  Sum_probs=131.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecC-CcccCCCCccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGIN  244 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p-~p~~~~~~~~~~~  244 (787)
                      ++|++||+.+++.+.++....   .+..+++++  +.|+++.  +++|++||+.+++.+.++.... ..    .   +  
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~---~--   81 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----R---V--   81 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----E---E--
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----c---c--
Confidence            689999999999999998776   688899987  4565544  3589999999999877776321 10    0   0  


Q ss_pred             cccceeEEcc--ceEEEecCCceec------Ccce-eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecc
Q 003907          245 VGYGPMAVGP--RWLAYASNTLLLS------NSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK  315 (787)
Q Consensus       245 ~~~~~lAlsp--r~LAyas~~~~l~------~~g~-~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~  315 (787)
                      .....++++|  ++|+++....-..      ..+. ..++.-+            +...                +.+. 
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~----------------~~~~-  132 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET------------LSRR----------------KAFE-  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT------------TEEE----------------EEEE-
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC------------CcEE----------------EEEe-
Confidence            0123577887  5777663110000      0000 0111100            1100                0100 


Q ss_pred             cccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCE
Q 003907          316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNN  393 (787)
Q Consensus       316 ~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~--~pIsaLaFSpdG~lLATaS~dG~~  393 (787)
                            .......+.++++.+...    .+  ++.|.+||+.+++.+..+..+.  .++   +|+|+|++|+.++..+..
T Consensus       133 ------~~~~~~~~~~s~dg~~l~----~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~  197 (337)
T 1pby_B          133 ------APRQITMLAWARDGSKLY----GL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             ------CCSSCCCEEECTTSSCEE----EE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTE
T ss_pred             ------CCCCcceeEECCCCCEEE----Ee--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCc
Confidence                  011122233444444322    22  5789999999999888887654  443   899999988766654543


Q ss_pred             -----------------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          394 -----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       394 -----------------------IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                                             |.+||+..       +.         .....+.  .....+.+++|+|||++|+++ 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~-  258 (337)
T 1pby_B          198 MATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREVR--IMDVFYFSTAVNPAKTRAFGA-  258 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEE-
T ss_pred             eeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeecC--CCCCceeeEEECCCCCEEEEe-
Confidence                                   57788743       20         1122222  122357899999999999988 


Q ss_pred             CCCeEEEEeCCC
Q 003907          451 SKGTCHVFVLSP  462 (787)
Q Consensus       451 ~dgTVhIwdl~~  462 (787)
                       +++|++||+..
T Consensus       259 -~~~v~~~d~~~  269 (337)
T 1pby_B          259 -YNVLESFDLEK  269 (337)
T ss_dssp             -ESEEEEEETTT
T ss_pred             -CCeEEEEECCC
Confidence             68999999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.24  E-value=3.8e-11  Score=141.13  Aligned_cols=285  Identities=11%  Similarity=0.044  Sum_probs=156.2

Q ss_pred             CeEEEEEecCcEEEEEccCCCceeEeeeeccC---cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg---~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      ++++..+.++.+++||++ .++...++..+..   .|..++++|+.           +  .||+.....           
T Consensus        27 g~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-----------~--~la~~~~~~-----------   81 (719)
T 1z68_A           27 QEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-----------Q--FVYLESDYS-----------   81 (719)
T ss_dssp             SEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-----------S--EEEEEEEEE-----------
T ss_pred             CeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-----------C--eEEEEecCc-----------
Confidence            466766665669999995 4667777766543   48899999852           2  666543210           


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEe
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t  229 (787)
                             +.|.      ....++|++||+.+++.+...+....+..++++|  +.||.+.+++|++||+.+++... +..
T Consensus        82 -------~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~~  147 (719)
T 1z68_A           82 -------KLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-ITF  147 (719)
T ss_dssp             -------ECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCC
T ss_pred             -------eeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Eec
Confidence                   1110      0013589999999998743233456788999998  68888888999999999887533 221


Q ss_pred             cCCcccCCCCccc-c-----ccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhh
Q 003907          230 YPVPQLAGQGAVG-I-----NVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (787)
Q Consensus       230 ~p~p~~~~~~~~~-~-----~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~  301 (787)
                      .......-.|.+. +     ......++++|  ++|||+..+.-  .............   . . |.    +       
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~---~-~-~~----~-------  209 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDE---Q-Y-PR----T-------  209 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSS---S-S-CE----E-------
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCC---C-C-cc----c-------
Confidence            1110000000000 0     00013688998  88998753200  0000000000000   0 0 00    0       


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE--------EEeccCCCCeE
Q 003907          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHTSPIS  373 (787)
Q Consensus       302 sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v--------~~~~aH~~pIs  373 (787)
                               ..+ +     +|.             .     ........|.+||+.+++.+        ..+.+|...+.
T Consensus       210 ---------~~~-~-----yp~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          210 ---------INI-P-----YPK-------------A-----GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             ---------EEE-E-----CCB-------------T-----TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             ---------eee-c-----CCC-------------C-----CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence                     000 0     000             0     01122358999999987642        22456888999


Q ss_pred             EEEECCCCCEEEEEEcCC---CEEEEEe----CCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----EEEEc
Q 003907          374 ALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----DICFS  440 (787)
Q Consensus       374 aLaFSpdG~lLATaS~dG---~~IrVWd----i~~~~~~~~~g~~~~~~~~s~~~l~~-l~rG~~~a~I~-----slaFS  440 (787)
                      .++|||||+++++....+   ..|.+||    +..       |.        ...+.. .+.+ +...|.     +++||
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEES-RTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEEC-SSSCSSSSSCCCCEEC
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEeccccc-CCceEccccCCccEEC
Confidence            999999999888865422   2377788    532       10        011110 0012 122344     78999


Q ss_pred             cCCCEEEE--EeCCCeEEEEeCCCCCC
Q 003907          441 HYSQWIAI--VSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       441 pDg~~LAs--~S~dgTVhIwdl~~~gg  465 (787)
                      |||++|+.  +..+|..+||-++..++
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCC
Confidence            99996654  55667666665544333

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.21  E-value=3.4e-09  Score=114.56  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             CceEEEEECC-CCcE--EEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE-
Q 003907          348 AGIVVVKDFV-TRAI--ISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-  421 (787)
Q Consensus       348 dG~V~IwDl~-s~~~--v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~-  421 (787)
                      ++.|.+||+. +++.  +..+.  .|...+..++|+|||++|++++..+..|.+|++...     .|.        ... 
T Consensus       166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~  232 (365)
T 1jof_A          166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT  232 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred             CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence            3578899987 6654  23343  345678999999999999998876677999987431     020        011 


Q ss_pred             EEEEec---ccc--cc------cEEEEE-EccCCCEEEEEeCC-C-----eEEEEeCCC
Q 003907          422 LYKLHR---GIT--SA------TIQDIC-FSHYSQWIAIVSSK-G-----TCHVFVLSP  462 (787)
Q Consensus       422 l~~l~r---G~~--~a------~I~sla-FSpDg~~LAs~S~d-g-----TVhIwdl~~  462 (787)
                      ...+..   +..  ..      .+.+++ |||||++|++++.+ +     +|.+|+++.
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~  291 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence            112211   111  11      488999 99999999877643 2     899999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.18  E-value=3.2e-09  Score=113.99  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCcE--EEEeccCCCC---eEEEEECCCCCEEEEEE--------cCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907          349 GIVVVKDFVTRAI--ISQFKAHTSP---ISALCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYDW  415 (787)
Q Consensus       349 G~V~IwDl~s~~~--v~~~~aH~~p---IsaLaFSpdG~lLATaS--------~dG~~IrVWdi~~~~~~~~~g~~~~~~  415 (787)
                      +.|.+||+.+++.  +..+.++...   ...++|+|||+.|+...        ..+..|.+||+..       +      
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~------  330 (388)
T 3pe7_A          264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G------  330 (388)
T ss_dssp             EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-------T------
T ss_pred             ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C------
Confidence            4599999998873  3344432111   11237999999988653        2244699999853       2      


Q ss_pred             CCcceEEEEEecccc---------cccEEEEEEccCCCEEEEEeC-CCeEEEEeCCC
Q 003907          416 NSSHVHLYKLHRGIT---------SATIQDICFSHYSQWIAIVSS-KGTCHVFVLSP  462 (787)
Q Consensus       416 ~~s~~~l~~l~rG~~---------~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~  462 (787)
                           .+..+..+..         ...+.+++|||||++|+.++. ++..+||.++.
T Consensus       331 -----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          331 -----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             -----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             -----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence                 2333432211         003678999999999987775 68888887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.15  E-value=6.4e-11  Score=132.74  Aligned_cols=98  Identities=13%  Similarity=0.273  Sum_probs=80.1

Q ss_pred             ccCCCceEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907          344 DMDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~--------~---~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~  411 (787)
                      ++..||.|+|||+.+.        +   .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+..       +  
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~--  182 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T--  182 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S--
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C--
Confidence            5678999999998654        2   25667789999999999998 899999999776 99999954       1  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                              ..+.... + +...|++++|+|||++|++++.||+|+|||+.
T Consensus       183 --------~~~~~~~-~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          183 --------VKVCATL-P-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             --------EEEEEEE-C-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             --------cceeecc-C-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence                    2333332 3 34579999999999999999999999999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.14  E-value=5.3e-10  Score=128.30  Aligned_cols=90  Identities=10%  Similarity=0.024  Sum_probs=66.0

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|||+.+++.......+.   .+++|||||++||+++.++   ..|.+||+..       |           .+..+..
T Consensus       134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-------g-----------~~~~l~~  192 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-------G-----------GLRVFDS  192 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-------C-----------CCEEECC
T ss_pred             ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-------C-----------CceEeec
Confidence            3499998887654444333   7899999999999888751   4589999853       2           1223432


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCC--eEEEEeCCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKG--TCHVFVLSPF  463 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dg--TVhIwdl~~~  463 (787)
                        +...+.+++|||||++|+++..++  +|++||++..
T Consensus       193 --~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          193 --GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             --SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             --CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence              234689999999999999888888  8889988753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.13  E-value=5.8e-09  Score=109.39  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=46.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                      ++|.+||+++++.+.++....  .+..+++++  +.++++.  +++|++||+.+++.+..+..
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            689999999999999998776  788888887  4555543  46899999999988777663

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.06  E-value=4.9e-07  Score=93.22  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             CceEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ++.|.+||. +++.+..+..+  ...+..|+|+++|+++++...++..|.+||..        |          ..+..+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~~  244 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL  244 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEEE
Confidence            567888987 45566666543  36788999999999998887644369999952        2          244444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+.....+.+|+|+|||+++++ +.+++|+||++..
T Consensus       245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            43322234789999999987766 6799999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.06  E-value=1.7e-09  Score=128.62  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCc---EEE--EEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~---V~~--v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~  148 (787)
                      ++++|+.+ ++.+++||+. +++...++..+...   +.+  +.++|+.             ..||+...+..       
T Consensus        27 dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-------------~~l~~~~~~~~-------   84 (740)
T 4a5s_A           27 DHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG-------------QFILLEYNYVK-------   84 (740)
T ss_dssp             SSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS-------------SEEEEEEEEEE-------
T ss_pred             CCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC-------------CEEEEEECCee-------
Confidence            36788887 6679999995 46677788777633   223  6667642             25665443210       


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCce
Q 003907          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLEN  223 (787)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~  223 (787)
                             +    +.      +.....+.+||+++++..........+..++++|  +.||.+.++.|++||+.+++.
T Consensus        85 -------~----~r------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           85 -------Q----WR------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             -------C----SS------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             -------e----EE------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence                   0    00      0112478899999998654334467899999999  688888889999999998874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.01  E-value=1.2e-09  Score=128.29  Aligned_cols=51  Identities=18%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCc----EEEEEecC--CeEEEEeC----------CeEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSS----VCMVRCSP--RIVAVGLA----------TQIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~----V~sV~~s~--~~LaV~~~----------~~I~iwD~~T~e~  223 (787)
                      ++|++||+.+++....+..+..    |.+++++|  +.||.+..          .+|++||+.+++.
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            5799999999998877765543    88999988  67777654          6799999998875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.93  E-value=4e-07  Score=99.04  Aligned_cols=96  Identities=8%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CCCceEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEEc-C---------CCEEEEEeCCCCc
Q 003907          346 DNAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSC  403 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~--~v~~~~a------H~----~pIsaLaFSpdG~lLATaS~-d---------G~~IrVWdi~~~~  403 (787)
                      ..+|.|.++|+...+  .+..+..      +.    .....++|+|+|+.|..+.. +         +..|.+||+..  
T Consensus       218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--  295 (361)
T 2oiz_A          218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--  295 (361)
T ss_dssp             BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--
T ss_pred             eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--
Confidence            346789999987543  2222211      11    11123789999887776643 2         23699999864  


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                           +          +.+.++.-|   . +.+|+|+|||++|++++. ++|.|||+.+.
T Consensus       296 -----~----------~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          296 -----K----------QRVARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             -----T----------EEEEEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             -----C----------cEEEEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence                 2          456666544   2 789999999999999887 99999998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.90  E-value=3.9e-08  Score=116.85  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEeC----------CeEEEEECCCCceeEEEEecCCcc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLENKFSVLTYPVPQ  234 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~~----------~~I~iwD~~T~e~l~tl~t~p~p~  234 (787)
                      ++|++||+++++....+..+.      ...++.++|  +.|+.+..          ..+++||+.+++.. .+..++.. 
T Consensus        36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~-  113 (740)
T 4a5s_A           36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN-  113 (740)
T ss_dssp             TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT-
T ss_pred             CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc-
Confidence            489999999999887776543      223467777  67777665          45789999998743 23322221 


Q ss_pred             cCCCCccccccccceeEEcc--ceEEEecC
Q 003907          235 LAGQGAVGINVGYGPMAVGP--RWLAYASN  262 (787)
Q Consensus       235 ~~~~~~~~~~~~~~~lAlsp--r~LAyas~  262 (787)
                                  ....++||  ++|||..+
T Consensus       114 ------------~~~~~~SPdG~~la~~~~  131 (740)
T 4a5s_A          114 ------------TQWVTWSPVGHKLAYVWN  131 (740)
T ss_dssp             ------------EEEEEECSSTTCEEEEET
T ss_pred             ------------ceeeEECCCCCEEEEEEC
Confidence                        23567777  77777643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.85  E-value=1.2e-06  Score=93.54  Aligned_cols=231  Identities=10%  Similarity=-0.055  Sum_probs=140.2

Q ss_pred             CeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        75 ~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +++.++...+ .+.|||... +++...+. .......+.+.|+            .  .|.+ +...             
T Consensus        54 ~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~~~~------------g--~lyv-~~~~-------------  103 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHFLSD------------E--KAYV-TQIW-------------  103 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEEEET------------T--EEEE-EEBS-------------
T ss_pred             CEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEEeCC------------C--eEEE-EECC-------------
Confidence            4566776654 599999964 55544443 2345666776542            1  2333 2201             


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecCCeEEEEe---CCeEEEEECCCCcee
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK  224 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~~~LaV~~---~~~I~iwD~~T~e~l  224 (787)
                                        .++|.+||+++++.+.++....      ....|.+..+.|.|+.   ++.|.+||+.+++.+
T Consensus       104 ------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A          104 ------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             ------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             ------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence                              2589999999999998887554      5555566666666653   568999999999887


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk  303 (787)
                      .++.....|              ..++++| ..|.++...       .                                
T Consensus       166 ~~i~~g~~p--------------~~i~~~~dG~l~v~~~~-------~--------------------------------  192 (328)
T 3dsm_A          166 DELTIGIQP--------------TSLVMDKYNKMWTITDG-------G--------------------------------  192 (328)
T ss_dssp             EEEECSSCB--------------CCCEECTTSEEEEEBCC-------B--------------------------------
T ss_pred             EEEEcCCCc--------------cceEEcCCCCEEEEECC-------C--------------------------------
Confidence            777643222              1234433 111111100       0                                


Q ss_pred             hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCC
Q 003907          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGT  382 (787)
Q Consensus       304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~  382 (787)
                                  +.        .      .         ......+.|.++|..+++....+... ......|+|+|+|+
T Consensus       193 ------------~~--------~------~---------~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~  237 (328)
T 3dsm_A          193 ------------YE--------G------S---------PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD  237 (328)
T ss_dssp             ------------CT--------T------C---------SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred             ------------cc--------C------C---------ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence                        00        0      0         00112578999999999888777543 23678999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCEEEEE----eCCCeEEE
Q 003907          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIV----SSKGTCHV  457 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~LAs~----S~dgTVhI  457 (787)
                      +|..+..   .|.+||+......   .          ...  +..+  ......|+++|+ ++..++.    ..+++|.+
T Consensus       238 ~lyv~~~---~v~~~d~~t~~~~---~----------~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          238 TLYWINN---DIWRMPVEADRVP---V----------RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             EEEEESS---SEEEEETTCSSCC---S----------SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             EEEEEcc---EEEEEECCCCcee---e----------eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            9887754   4889998541000   0          000  0000  134789999995 5555555    57899999


Q ss_pred             EeCC
Q 003907          458 FVLS  461 (787)
Q Consensus       458 wdl~  461 (787)
                      ||.+
T Consensus       298 ~d~~  301 (328)
T 3dsm_A          298 YSPQ  301 (328)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9976

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.83  E-value=1.6e-07  Score=108.97  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=65.7

Q ss_pred             ceEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       349 G~V~IwDl~-s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      ..|.+||+. ++   +.......|...+..++|+|||+++++++.+|. .+||.+...     .+           .+..
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-----------~~~~  279 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-----------AATQ  279 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-----------CEEE
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-----------ceee
Confidence            478999998 56   444444566789999999999998888877653 445544211     01           1122


Q ss_pred             Eecccccc-------cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          425 LHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       425 l~rG~~~a-------~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      +..+....       .+.+++|+||++++++++. ++++||.++..++
T Consensus       280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~  326 (662)
T 3azo_A          280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG  326 (662)
T ss_dssp             SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred             cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence            21111100       1567999999999999999 9999997765433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.82  E-value=2.4e-07  Score=99.29  Aligned_cols=98  Identities=7%  Similarity=-0.033  Sum_probs=66.8

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG-----~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      ..++.|.+||+.+++. ..+..|...+..++|+| ||+.||.++..+     ..|.++|+..       +          
T Consensus       165 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~----------  226 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------T----------  226 (388)
T ss_dssp             CCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------C----------
T ss_pred             CCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------C----------
Confidence            3457899999998864 44556777899999999 999999888642     1366666532       1          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCC-C----eEEEEeCCC
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-G----TCHVFVLSP  462 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-g----TVhIwdl~~  462 (787)
                       ....+..+.....+..++|||||++|+..+.+ +    +|++||+..
T Consensus       227 -~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          227 -NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             -CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred             -ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence             12223222211247789999999988776542 2    488998875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.81  E-value=9.7e-08  Score=102.08  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEc---------------CCCEEEEEeCCCCcccCCCCCCc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK  412 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~---------------dG~~IrVWdi~~~~~~~~~g~~~  412 (787)
                      +.|.+||+.+++...... .. ... ++|+| ||++|++++.               .+..|.+||+..       +   
T Consensus       264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~---  330 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K---  330 (396)
T ss_dssp             EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred             ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence            568899998876433221 11 233 89999 9999988652               235689999853       2   


Q ss_pred             cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCccccc
Q 003907          413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~---------a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~~~~~  470 (787)
                              .+..+..+...         ..+.+++|+|||++|+.++. ++...||.++..++...+.
T Consensus       331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence                    11122211110         02466899999999888775 5778888887655555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.80  E-value=1.6e-06  Score=91.43  Aligned_cols=96  Identities=11%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ...|.+||  +++....+..|...+.. ++|+ || ++++++.+| .++|| +..       |          .. ..+.
T Consensus       243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~~-------g----------~~-~~~~  298 (347)
T 2gop_A          243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IWD-------G----------EI-KPIA  298 (347)
T ss_dssp             SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EES-------S----------SE-EEEE
T ss_pred             cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-EcC-------C----------ce-EEEe
Confidence            35688888  56655555677888886 9999 99 999998866 58999 842       3          12 2333


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeE-EEEeCCCCCCcccccccc
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTV-hIwdl~~~gg~~~~~~H~  473 (787)
                      .+  ...|.+++|+|  +++++++.+++. +||.++  +....+..|+
T Consensus       299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n  340 (347)
T 2gop_A          299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN  340 (347)
T ss_dssp             CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred             cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence            32  34689999999  677777777765 888887  4444455554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.78  E-value=2.6e-06  Score=90.75  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             CCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEc------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      .++.|++||..+++.+..+.  .+...+.+++|+| |.++++.+.      .+..|++||...       |         
T Consensus       216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g---------  278 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G---------  278 (329)
T ss_dssp             TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C---------
T ss_pred             CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C---------
Confidence            46789999999889888884  5667889999999 544444332      123589999754       3         


Q ss_pred             ceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          419 HVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       419 ~~~l~~l~rG-~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       ..+..+..+ .......+|+|+|||+.+++.+.+++|++|++..
T Consensus       279 -~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          279 -EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             -CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             -eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence             344444211 1123589999999998888889999999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.74  E-value=9e-06  Score=86.83  Aligned_cols=178  Identities=6%  Similarity=-0.057  Sum_probs=117.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      ++|.+||.++++.+.++........|.+++ ..|.|+.  ++.|++||+.+++...++......     +         .
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~---------~  129 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----M---------E  129 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----T---------T
T ss_pred             CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----c---------c
Confidence            589999999999999997666788888843 4555554  678999999999877776542210     0         0


Q ss_pred             eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (787)
Q Consensus       250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~  329 (787)
                      . -.|.-|++.+..        +                    .+                                   
T Consensus       130 ~-~~p~~i~~~~~~--------l--------------------yv-----------------------------------  145 (328)
T 3dsm_A          130 S-GSTEQMVQYGKY--------V--------------------YV-----------------------------------  145 (328)
T ss_dssp             T-CBCCCEEEETTE--------E--------------------EE-----------------------------------
T ss_pred             C-CCcceEEEECCE--------E--------------------EE-----------------------------------
Confidence            0 011222331110        0                    00                                   


Q ss_pred             ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCC
Q 003907          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM  400 (787)
Q Consensus       330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~  400 (787)
                                   +....++.|.++|+.+++.+..+..... ...++|+|+|++++++..+         ...|.+||..
T Consensus       146 -------------~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          146 -------------NCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             -------------EECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             -------------EcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence                         0001367899999999998888876443 4689999999988877653         1468999975


Q ss_pred             CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .       +          .....+.... ......|+|+||+++|.++..  +|.+||+..
T Consensus       212 t-------~----------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          212 T-------F----------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             T-------T----------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred             C-------C----------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence            3       2          2333332210 124789999999999988765  888888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=1.9e-06  Score=92.03  Aligned_cols=91  Identities=9%  Similarity=-0.000  Sum_probs=58.1

Q ss_pred             ceEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~--~pIsaLaFSpdG~lLATaS~dG----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ..|.+||+..++.. .+..+.  ..+..++|+|||++|+.++.++    ..|.+||+..       |.        ...+
T Consensus       216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l  279 (396)
T 3c5m_A          216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-------LE--------NEEV  279 (396)
T ss_dssp             CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-------CC--------EEEE
T ss_pred             ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-------CC--------eEEe
Confidence            45677787655433 333332  3578899999999888776532    3389999853       20        1122


Q ss_pred             EEEecccccccEEEEEEcc-CCCEEEEEe----------------CCCeEEEEeCCC
Q 003907          423 YKLHRGITSATIQDICFSH-YSQWIAIVS----------------SKGTCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSp-Dg~~LAs~S----------------~dgTVhIwdl~~  462 (787)
                      ..+. +     +. ++|+| ||++|+.++                .+..|.+||+..
T Consensus       280 ~~~~-~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          280 MVMP-P-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EECC-S-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             eeCC-C-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            2211 1     23 89999 999998865                346788888764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.70  E-value=2.8e-05  Score=81.67  Aligned_cols=106  Identities=7%  Similarity=0.023  Sum_probs=64.9

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        74 ~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      ++++++++..+ ++.+||.+ .+++..+.......+..+.+.|+           +  .+++. ..++.           
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~d-----------g--~l~v~-~~~~~-----------  108 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKD-----------G--RLFVC-YLGDF-----------  108 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTT-----------S--CEEEE-ECTTS-----------
T ss_pred             CCCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCC-----------C--cEEEE-eCCCC-----------
Confidence            36677777654 59999985 45565555445567888887753           1  25432 21110           


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeEEEEeC-------CeEEEEECCC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-------TQIYCFDALT  220 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~--~~LaV~~~-------~~I~iwD~~T  220 (787)
                                       ...+.|.+||.++++....+.   ....+.+|.+++  +++++...       ..|+.||..+
T Consensus       109 -----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          109 -----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             -----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             -----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence                             012579999998887654443   124688999987  44444432       3588888766


Q ss_pred             Cc
Q 003907          221 LE  222 (787)
Q Consensus       221 ~e  222 (787)
                      ++
T Consensus       172 ~~  173 (333)
T 2dg1_A          172 RT  173 (333)
T ss_dssp             CC
T ss_pred             CE
Confidence            54

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.69  E-value=2e-06  Score=90.73  Aligned_cols=82  Identities=7%  Similarity=0.084  Sum_probs=53.9

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-------CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .|.++|  +++ ...+..| ..+..+  +|||++||.++.++       ..|.+||  .       +           ..
T Consensus       201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------~-----------~~  254 (347)
T 2gop_A          201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------K-----------EV  254 (347)
T ss_dssp             EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------S-----------CE
T ss_pred             cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------C-----------ce
Confidence            455566  444 3444445 555554  99999999887643       3466666  2       2           12


Q ss_pred             EEEecccccccEEE-EEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          423 YKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       423 ~~l~rG~~~a~I~s-laFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ..+..+ ....|.+ ++|+ || ++++++.+++++|| +.
T Consensus       255 ~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          255 MGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             Eecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            223222 2245776 9999 99 99999999999999 87

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.68  E-value=7.3e-06  Score=85.08  Aligned_cols=88  Identities=11%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             CceEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          348 AGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       348 dG~V~IwDl~-s~~~---v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      ++.|.+||+. +++.   ...+..+...+..|+|+++|+++++.  ++ .|.+||..        |          ..+.
T Consensus       192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~-~v~~~~~~--------g----------~~~~  250 (296)
T 3e5z_A          192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD-GVHVLTPD--------G----------DELG  250 (296)
T ss_dssp             TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-EEEEECTT--------S----------CEEE
T ss_pred             CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-eEEEECCC--------C----------CEEE
Confidence            4567777765 3433   23333355567789999999988877  34 58999963        2          3444


Q ss_pred             EEecccccccEEEEEE-ccCCCEEEEEeCCCeEEEEeCCC
Q 003907          424 KLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       424 ~l~rG~~~a~I~slaF-SpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .+...  .. +.+++| +||++.|.+++.++   ||.+++
T Consensus       251 ~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~  284 (296)
T 3e5z_A          251 RVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIET  284 (296)
T ss_dssp             EEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred             EEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence            44422  23 789999 69999999999874   555544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.64  E-value=4.4e-06  Score=92.72  Aligned_cols=80  Identities=9%  Similarity=0.107  Sum_probs=58.3

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE--EE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--LY  423 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~--l~  423 (787)
                      ..+|.|.+||+.++....    +...|+|++|||+|  ++.+..||+ |++|+...       +          ..  ..
T Consensus       143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k~  198 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQF  198 (388)
T ss_dssp             ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEEE
T ss_pred             ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------cccccc
Confidence            468999999999887643    45689999999999  566777676 89997632       1          11  33


Q ss_pred             EEec----c---cccccEEEEEEccCCCEEEEE
Q 003907          424 KLHR----G---ITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       424 ~l~r----G---~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ++-+    +   .+...|.+|+|.++++||++=
T Consensus       199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            3411    1   023579999999999999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.56  E-value=2.8e-05  Score=91.72  Aligned_cols=97  Identities=11%  Similarity=-0.018  Sum_probs=65.6

Q ss_pred             CceEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGNN-INIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       348 dG~V~IwDl~s~~--~v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~-IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .+.|.+||+.++.  ....+..|..  .|..++|++++.+++++..+|.. |.+||+..       |          ..+
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~  372 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL  372 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence            4578889987764  2345555544  68889999888899999887642 55666532       3          234


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPF  463 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~~  463 (787)
                      ..+...  ...|..++|+||++.|+.+.    ..+++.+||+...
T Consensus       373 ~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          373 KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            445322  45688999999998766442    2468999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.56  E-value=1.8e-05  Score=91.88  Aligned_cols=181  Identities=10%  Similarity=-0.020  Sum_probs=121.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~--T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++|.++|..+++.+.++.....+..+.+++  ++|.|+. ++.|.+||+.  +++.+.++.....               
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---------------  241 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---------------  241 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---------------
T ss_pred             CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---------------
Confidence            689999999999999999877888999987  6666655 4589999995  8887776653221               


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                            |+.+++....                       .|++..+.                                 
T Consensus       242 ------P~~ia~s~~~-----------------------~pDGk~l~---------------------------------  259 (567)
T 1qks_A          242 ------ARSIETSKME-----------------------GWEDKYAI---------------------------------  259 (567)
T ss_dssp             ------EEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred             ------CceeEEcccc-----------------------CCCCCEEE---------------------------------
Confidence                  2334443100                       00000000                                 


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a----------H~~-pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                                     .....++.|.|+|..+.+++..+..          |.. .+.++.+++++..++..-.+...|.+
T Consensus       260 ---------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          260 ---------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             ---------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             ---------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence                           0012356788999999888887653          222 68899999998776666666667899


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~  463 (787)
                      +|..+.      .         ...+..+..|   ....++.|+|||++|.++. .+++|.++|+.+.
T Consensus       325 vd~~~~------~---------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          325 VDYTDL------N---------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EETTCS------S---------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EecCCC------c---------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            997531      0         0122333222   2467899999999987765 5789999999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.56  E-value=2e-06  Score=99.67  Aligned_cols=97  Identities=13%  Similarity=0.001  Sum_probs=56.8

Q ss_pred             eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907          350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~p--------IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~  421 (787)
                      .|.+||+.+++....+..|...        +..++|+|+|+++++++. ++ ++||.+...      +          ..
T Consensus       266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~  327 (662)
T 3azo_A          266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE  327 (662)
T ss_dssp             EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred             EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence            4556666555544333333222        567999999999999988 65 799954221      1          13


Q ss_pred             EEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       422 l~~l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +..+..+  ...+..+ +++.+.-++++++.+....||.++..++.
T Consensus       328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4444322  2346666 55544445556677776777766544443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.56  E-value=4.9e-05  Score=79.68  Aligned_cols=230  Identities=8%  Similarity=-0.038  Sum_probs=148.0

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCceeEeeeecc-CcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~d-g~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      .+++|++|..++ +++||.+ ++++.-.+..++ ..+..+.++|+           +.  +|+  +.             
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pd-----------G~--ilv--s~-------------   54 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKA-----------GE--ILF--SY-------------   54 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTT-----------SC--EEE--EC-------------
T ss_pred             CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCC-----------CC--EEE--eC-------------
Confidence            467888888766 8999984 466666666555 36788888874           22  553  32             


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEEEeC--CeEEEEECCCCceeE
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGLA--TQIYCFDALTLENKF  225 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~LaV~~~--~~I~iwD~~T~e~l~  225 (787)
                                          .+.|..||. +|+.+.+++..  ..+.++.+.+  ++|++...  .+|+.+|. +++.++
T Consensus        55 --------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           55 --------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             --------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred             --------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence                                147999999 89999999875  4677777765  67766543  46888886 788777


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      ++.....-  .           +... .++.++..                           +.+..+            
T Consensus       113 ~~~~~~~~--~-----------~~~~-~~~~v~~~---------------------------~~G~~l------------  139 (276)
T 3no2_A          113 KTEFETGI--E-----------RPHA-QFRQINKN---------------------------KKGNYL------------  139 (276)
T ss_dssp             EEEECCSC--S-----------SGGG-SCSCCEEC---------------------------TTSCEE------------
T ss_pred             EEeccCCC--C-----------cccc-cccCceEC---------------------------CCCCEE------------
Confidence            66421100  0           0000 00111110                           011111            


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA  385 (787)
                                                           .....++.|.+||.. ++.+.++..+. ...++.+.++|++|+
T Consensus       140 -------------------------------------v~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          140 -------------------------------------VPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV  180 (276)
T ss_dssp             -------------------------------------EEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred             -------------------------------------EEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence                                                 122347889999988 89888888764 455678899999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeCC--------C
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSSK--------G  453 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpDg~~LAs~S~d--------g  453 (787)
                      +++. +..|..||..+       |          ..++++.+..    .-..+..++..+||+.+++.+..        +
T Consensus       181 ~~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~  242 (276)
T 3no2_A          181 ACGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK  242 (276)
T ss_dssp             ECBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred             EeCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence            8877 44588888643       4          4677775421    11247899999999998887522        3


Q ss_pred             eEEEEeCCCCC
Q 003907          454 TCHVFVLSPFG  464 (787)
Q Consensus       454 TVhIwdl~~~g  464 (787)
                      ..+++.+++.|
T Consensus       243 ~~~~~~~~~~g  253 (276)
T 3no2_A          243 HPQLVEIDSEG  253 (276)
T ss_dssp             CCSEEEECTTS
T ss_pred             CceEEEECCCC
Confidence            45788887643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.50  E-value=2.6e-05  Score=80.14  Aligned_cols=93  Identities=9%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             CceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ++.|.+||.. ++.+..+.  .+...+..|+|+|+|+++++.+. +..|++||..        +          ..+..+
T Consensus       141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~~  200 (286)
T 1q7f_A          141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQI  200 (286)
T ss_dssp             TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEEE
T ss_pred             CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEEE
Confidence            4577888853 45555553  45567899999999998887766 4469999963        2          234444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCC-eEEEEeC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL  460 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dg-TVhIwdl  460 (787)
                      ........+..|+|++||+++++...++ +|.+|+.
T Consensus       201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            2110113588999999999988888886 9999984

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.49  E-value=9.8e-05  Score=76.35  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             CceEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       348 dG~V~IwDl~-s~~-----~v~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      ++.|.+||+. +++     ....+..+. .....|+++++|+++++...++ .|.+||...       |          .
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~  258 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q  258 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence            3556666654 332     233444554 5678899999999998877644 589998742       1          1


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCCC
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG  464 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~g  464 (787)
                      .+..+..  ....+.+++|++||++|.++ ..++.|..|++...+
T Consensus       259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            1222221  12458999999999966555 456889999987543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.48  E-value=0.00015  Score=84.26  Aligned_cols=233  Identities=13%  Similarity=0.093  Sum_probs=138.7

Q ss_pred             eEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (787)
Q Consensus        76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~  154 (787)
                      .++++...+ .+.|+|.+. +++...+.... .+..+.+.|+.           +  +|.+ +++               
T Consensus       168 ~~~V~~~~~~~V~viD~~t-~~v~~~i~~g~-~p~~v~~SpDG-----------r--~lyv-~~~---------------  216 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST-YEIKTVLDTGY-AVHISRLSASG-----------R--YLFV-IGR---------------  216 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEEEECSS-CEEEEEECTTS-----------C--EEEE-EET---------------
T ss_pred             eEEEEeCCCCeEEEEECCC-CeEEEEEeCCC-CccceEECCCC-----------C--EEEE-EcC---------------
Confidence            444444444 499999954 55555444322 45677887642           2  4444 321               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCcEEEEEec----C--CeEEEEe--CCeEEEEECCCCcee
Q 003907          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----P--RIVAVGL--ATQIYCFDALTLENK  224 (787)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tVrlWdlk--tg~~v~tL~f~s~V~sV~~s----~--~~LaV~~--~~~I~iwD~~T~e~l  224 (787)
                                       .+.|.+||+.  +++.+.++.-......++++    +  ++|.|+.  .++|.++|..|++.+
T Consensus       217 -----------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          217 -----------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             -----------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             -----------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence                             1489999996  89999999876677889998    3  5777754  468999999999998


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEcc--ce--EEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RW--LAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~--LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d  300 (787)
                      .++.+...+.             ....+.|  |.  ++.+...                           ..+       
T Consensus       280 ~~i~~~~~~~-------------~~~~~~p~~rva~i~~s~~~---------------------------~~~-------  312 (567)
T 1qks_A          280 KIQSTRGMTY-------------DEQEYHPEPRVAAILASHYR---------------------------PEF-------  312 (567)
T ss_dssp             EEEECCEECT-------------TTCCEESCCCEEEEEECSSS---------------------------SEE-------
T ss_pred             EEEecccccc-------------ccccccCCCceEEEEEcCCC---------------------------CEE-------
Confidence            8886422110             0000000  00  1111000                           000       


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEEC
Q 003907          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFD  378 (787)
Q Consensus       301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFS  378 (787)
                                                               .......|.|.++|..+.+.  +..+. .......+.|+
T Consensus       313 -----------------------------------------vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~  350 (567)
T 1qks_A          313 -----------------------------------------IVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD  350 (567)
T ss_dssp             -----------------------------------------EEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC
T ss_pred             -----------------------------------------EEEecCCCeEEEEecCCCccceeeeee-ccccccCceEC
Confidence                                                     01123468888899876542  23332 23446678999


Q ss_pred             CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-ccccccEEEEE-EccCCCEEEEEe--CCCe
Q 003907          379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDIC-FSHYSQWIAIVS--SKGT  454 (787)
Q Consensus       379 pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-G~~~a~I~sla-FSpDg~~LAs~S--~dgT  454 (787)
                      |||++|.++......|.|+|+..       +          ..+..+.- |.....-..+. |+||+..+.+.+  .+++
T Consensus       351 pdgr~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~  413 (567)
T 1qks_A          351 GSHRYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS  413 (567)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCe
Confidence            99999988887677899999864       2          23333333 22111101122 688866655444  4689


Q ss_pred             EEEEeCCC
Q 003907          455 CHVFVLSP  462 (787)
Q Consensus       455 VhIwdl~~  462 (787)
                      |.|++..+
T Consensus       414 Vsvid~~~  421 (567)
T 1qks_A          414 VALIGTDP  421 (567)
T ss_dssp             EEEEECCT
T ss_pred             EEEecCCC
Confidence            99999886

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.40  E-value=1.9e-05  Score=82.78  Aligned_cols=171  Identities=9%  Similarity=0.078  Sum_probs=111.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      +.|.+||.++|+.+.++..+.  .+.++.+.+  ++|+ +.++.|++||. +++.++++......            ...
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~~   80 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EMQ   80 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EEE
T ss_pred             CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------ccc
Confidence            689999999999999998764  678888876  5666 66788999999 89998888752110            001


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      .+++.+                                  ++..+++.                                
T Consensus        81 ~~~~~~----------------------------------dG~~lv~~--------------------------------   94 (276)
T 3no2_A           81 TARILP----------------------------------DGNALVAW--------------------------------   94 (276)
T ss_dssp             EEEECT----------------------------------TSCEEEEE--------------------------------
T ss_pred             ccEECC----------------------------------CCCEEEEe--------------------------------
Confidence            111111                                  11111110                                


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                                      ...++.|..+|. +++.+..+.      .+..+...+++.++|++|++.+.++ .|.+||..  
T Consensus        95 ----------------~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~--  154 (276)
T 3no2_A           95 ----------------CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN--  154 (276)
T ss_dssp             ----------------ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT--
T ss_pred             ----------------cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC--
Confidence                            000223333342 333333332      2223455678899999999988755 58999963  


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                            |          ..++++..+   ..+.++.+.++|+.|++++.++.|..||..+
T Consensus       155 ------G----------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          155 ------G----------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             ------S----------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             ------C----------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence                  3          477787654   2356788999999999999888888887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.37  E-value=0.00021  Score=74.93  Aligned_cols=99  Identities=11%  Similarity=0.063  Sum_probs=59.8

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~--~l~  426 (787)
                      +.|..+|..+++... +..+...+..++|+|+|+.|..+...+..|.+||+...      |.       ....+.  .+.
T Consensus       162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~-------~~~~~~~~~~~  227 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GV-------TIQPFGATIPY  227 (333)
T ss_dssp             EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SS-------SEEEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------Cc-------CcccccceEEE
Confidence            455566655444332 22333457899999999866555443456999998421      10       001110  010


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .......+..|+|++||+++++...++.|.+|+.+
T Consensus       228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            00001357889999999988888888999999863

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.35  E-value=6.4e-05  Score=81.58  Aligned_cols=58  Identities=12%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEec
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +++|.+||..+++.+.++.....- .|.+++  ++|.++.           ++.|.+||+.+++.+.++...
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~  100 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP  100 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence            368999999999999988765434 888987  6777764           346999999999988888653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.32  E-value=0.00018  Score=78.87  Aligned_cols=98  Identities=9%  Similarity=0.078  Sum_probs=64.9

Q ss_pred             CCceEEEEECCCCc--EEEEeccC----------CCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCccc
Q 003907          347 NAGIVVVKDFVTRA--IISQFKAH----------TSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMR  405 (787)
Q Consensus       347 ~dG~V~IwDl~s~~--~v~~~~aH----------~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~~  405 (787)
                      ..|.|.+.|+.+..  .+..+...          ......++|+|||+.|..+..+         +..|.|+|+..    
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t----  307 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV----  307 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC----
Confidence            45788888886542  23333211          1224458899998887776532         23588889854    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEeCCCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG  464 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S-~dgTVhIwdl~~~g  464 (787)
                         +          +.+.++.-|.   ....|+|+|||+ .|+++. .+++|.|||+....
T Consensus       308 ---~----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          308 ---G----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ---C----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence               2          3445554332   368999999999 677776 58999999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.31  E-value=3.9e-05  Score=90.44  Aligned_cols=99  Identities=4%  Similarity=-0.099  Sum_probs=64.1

Q ss_pred             CceEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCC
Q 003907          348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       348 dG~V~IwDl~s------~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~---~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      +..|.+||+.+      +. ....+..|...+.. .|+|+|+.|+..+.++.   .|.+||+..       +.       
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~-------  322 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE-------  322 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence            45688888875      42 35666677766665 58999998887776433   578888743       10       


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                       ...+..+..+.....|.+++|++++.++++...++..+||-++.
T Consensus       323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence             00122333222223588999998888899999999766665543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.30  E-value=0.00024  Score=75.46  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             CCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907          347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~  400 (787)
                      .+..|.+||+.+++.+..+   .+|......|+|+|+|+++++.+.++ .|++|++.
T Consensus       266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~  321 (329)
T 3fvz_A          266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT  321 (329)
T ss_dssp             CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred             CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence            4568999999999999888   46778899999999998888777755 59999973

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.29  E-value=0.00012  Score=74.18  Aligned_cols=96  Identities=9%  Similarity=-0.046  Sum_probs=66.1

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ++.|.+||............+...+..|+++++|+++++...++ .|.+||....                 ... .+..
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~-----------------~~~-~~~~  230 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST-----------------TST-VLPF  230 (270)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS-----------------CCE-ECCC
T ss_pred             CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC-----------------cce-eecc
Confidence            35677777766554443334446788999999998887766544 4899987321                 111 1111


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      + ....+.+|+|++||+.+++.+.+++|++|++...
T Consensus       231 ~-~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          231 T-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             C-SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             C-CCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            1 1135899999999998899999999999998753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.25  E-value=1.5e-05  Score=93.80  Aligned_cols=97  Identities=8%  Similarity=-0.097  Sum_probs=64.8

Q ss_pred             CCceEEEEECCCCcE---EEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          347 NAGIVVVKDFVTRAI---ISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~---v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .++.|.+||+.+++.   ...+..+ ...|..++|+ ++.++++.+.++. .+||.+...      |          ..+
T Consensus       293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~  354 (695)
T 2bkl_A          293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------G----------KPV  354 (695)
T ss_dssp             TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------C----------CEE
T ss_pred             CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cee
Confidence            468999999987653   3333333 4568889998 7888888888664 788866321      2          233


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~  462 (787)
                      ..+. ......|..++|+||++.|+...    ..++|.+||+..
T Consensus       355 ~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          355 RTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            3332 11234578899999998777443    347899999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.20  E-value=0.00088  Score=69.21  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~-~~l~~l~r  427 (787)
                      +.|..+|.. ++ +..+..+....+.++|+|+|++|++.+. +..|.+||+...      |.        . .....+ .
T Consensus       153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~  214 (296)
T 3e5z_A          153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T  214 (296)
T ss_dssp             CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred             cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence            455555554 33 3444566667789999999999955554 556999998421      21        0 011222 1


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      . ....+..|+|++||+++++.  ++.|.+|+.+
T Consensus       215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            1 22346789999999976666  7889999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.17  E-value=0.00081  Score=74.43  Aligned_cols=99  Identities=10%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             CCCceEEEEECCCCc--EEEEec--------c--CCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcc
Q 003907          346 DNAGIVVVKDFVTRA--IISQFK--------A--HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM  404 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~--~v~~~~--------a--H~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~  404 (787)
                      ..+|.|.+.|+.+..  .+..+.        .  +...+..++++|+++.|..+..+         ++.|-++|+.+   
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t---  320 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---  320 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---
Confidence            447899999997654  333222        0  12234458889999988776531         35688889865   


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCeEEEEeCCCCC
Q 003907          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFG  464 (787)
Q Consensus       405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~-S~dgTVhIwdl~~~g  464 (787)
                          +          +.+.++.-|   ..+++|+||+|++ +|.++ ..+++|.|+|....+
T Consensus       321 ----~----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          321 ----G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             ----C----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ----C----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence                2          345555444   2578999999997 66665 458999999998654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.11  E-value=0.00072  Score=75.80  Aligned_cols=57  Identities=9%  Similarity=-0.071  Sum_probs=44.8

Q ss_pred             CEEEEEECCCCeEEEEEeCC--------CcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~--------s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|.++|.++++.+.++...        ..-..+.+++  ++|.|+.   .+.|.++|+.+++.+.+|..
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            48999999999999999764        2335677776  6777764   35799999999998887763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.10  E-value=0.0003  Score=83.45  Aligned_cols=96  Identities=5%  Similarity=-0.048  Sum_probs=62.8

Q ss_pred             CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      .+.|.+||+.++  +....+..+...+..++|+ ++.++++...+|. .+||.+...      |          ..+..+
T Consensus       340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~~~l  401 (741)
T 1yr2_A          340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------G----------KPAGAV  401 (741)
T ss_dssp             TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------S----------CEEEEC
T ss_pred             CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cceeec
Confidence            467888998774  3444455566667788887 6778888888664 677765321      2          233344


Q ss_pred             ecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP  462 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~  462 (787)
                      .. .....|..++|+||++.|+...    ..+++.+||+..
T Consensus       402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            31 1234688999999998666332    347899999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.09  E-value=0.011  Score=59.81  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=60.9

Q ss_pred             CceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+||. .       +.         ...+.+.
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~  221 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP  221 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred             CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence            345667776 5544332 3344556889999999998876654 445889987 3       21         1112221


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                        .....+.+|++++||+..++...++.|.+|+.
T Consensus       222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence              12245899999999997777667889999987

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.07  E-value=0.00067  Score=76.41  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=57.1

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC  438 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~---------~---a~I~sla  438 (787)
                      ....|.+||||++|..+......|.+||+...      +        ....+..+.-|-.         .   ..-+.++
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~  387 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE  387 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence            46789999999999998887778999998521      1        1134444443311         0   0137799


Q ss_pred             EccCCCEEEEEe------------CCCeEEEE--eCCCCCCcccc
Q 003907          439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGGDSGF  469 (787)
Q Consensus       439 FSpDg~~LAs~S------------~dgTVhIw--dl~~~gg~~~~  469 (787)
                      +||||++|.++.            ++..+.++  ++++.+| ..+
T Consensus       388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~  431 (462)
T 2ece_A          388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEI  431 (462)
T ss_dssp             ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEE
T ss_pred             EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-cee
Confidence            999999999998            33345555  7787766 443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.07  E-value=0.0033  Score=65.52  Aligned_cols=69  Identities=14%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HY  442 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pD  442 (787)
                      .+..+......|+++++|++.++... +..|.+||...       |          ..+..+...  ...+++++|+ ||
T Consensus       193 ~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~~~~~i~~p--~~~~t~~~f~g~d  252 (297)
T 3g4e_A          193 KLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------KRLQTVKLP--VDKTTSCCFGGKN  252 (297)
T ss_dssp             ECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------CEEEEEECS--SSBEEEEEEESGG
T ss_pred             ECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------eEEEEEECC--CCCceEEEEeCCC
Confidence            34444456788999999998887766 55688998643       3          344455432  2358999999 99


Q ss_pred             CCEEEEEeCC
Q 003907          443 SQWIAIVSSK  452 (787)
Q Consensus       443 g~~LAs~S~d  452 (787)
                      ++.|.+++..
T Consensus       253 ~~~L~vt~~~  262 (297)
T 3g4e_A          253 YSEMYVTCAR  262 (297)
T ss_dssp             GCEEEEEEBC
T ss_pred             CCEEEEEcCC
Confidence            9988777754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.01  E-value=0.0091  Score=63.26  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=45.1

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYS  443 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg  443 (787)
                      +..+......++++++|++.++... +..|.+||..        |          ..+..+.-.  ...+.+++|+ +|+
T Consensus       225 ~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~--------g----------~~~~~i~~~--~~~~~~~af~g~d~  283 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTD--------G----------NHIARYEVP--GKQTTCPAFIGPDA  283 (326)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECTT--------C----------CEEEEEECS--CSBEEEEEEESTTS
T ss_pred             CCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECCC--------C----------CEEEEEECC--CCCcEEEEEecCCC
Confidence            3333445678999999998877655 3458888862        2          233444322  2359999999 999


Q ss_pred             CEEEEEeCCC
Q 003907          444 QWIAIVSSKG  453 (787)
Q Consensus       444 ~~LAs~S~dg  453 (787)
                      +.|.+++.++
T Consensus       284 ~~L~vt~~~~  293 (326)
T 2ghs_A          284 SRLLVTSARE  293 (326)
T ss_dssp             CEEEEEEBCT
T ss_pred             CEEEEEecCC
Confidence            8887666543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.00  E-value=0.0029  Score=69.93  Aligned_cols=73  Identities=12%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------ccccEEEE
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------TSATIQDI  437 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-----G~--------~~a~I~sl  437 (787)
                      ....|+|+|+|+++++-+..++.|++|++..       |           .+..+..     |.        .-.....|
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi  385 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI  385 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence            4678999999997766551467799999633       2           1222211     00        01247899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ++++||+++++-..++.|+.++++
T Consensus       386 avd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          386 CYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEcCCCCEEEEECCCCeEEEEEeC
Confidence            999999888888889999888763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.96  E-value=9.6e-05  Score=81.93  Aligned_cols=89  Identities=9%  Similarity=0.100  Sum_probs=69.6

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+|.|++||+.+......+..|..+|..+.+.+..  +|.++.+|. +.+||+..       +          ... .+.
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~-------~----------~~~-~~~  162 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRT-------K----------STK-QLA  162 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTT-------C----------CEE-EEE
T ss_pred             cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccC-------C----------ccc-ccc
Confidence            46889999998877777788889999998887653  888888775 99999964       2          121 222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                           ..|.+++|||+|  ++.+..||++++|+....
T Consensus       163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             -----ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence                 259999999999  788999999999977543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.89  E-value=0.00078  Score=74.04  Aligned_cols=54  Identities=9%  Similarity=-0.119  Sum_probs=45.1

Q ss_pred             EEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 003907          174 AVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +|.++|..+++.+.++... .+  .+.+++  +.|.|+.           ++.|.+||+.|++...++..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v  114 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            8999999999999999743 35  688877  6777764           46799999999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.83  E-value=0.0011  Score=70.76  Aligned_cols=56  Identities=9%  Similarity=-0.033  Sum_probs=41.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-------cEEEEEecC--CeEEEE-----eCCeEEEEECCCCceeEEEE
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSVL  228 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-------~V~sV~~s~--~~LaV~-----~~~~I~iwD~~T~e~l~tl~  228 (787)
                      .+|.+||+++++.++++.++.       .+.+|++++  ..+.++     ....|++||+.+++....+.
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~  162 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ  162 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence            589999999999999998752       357888874  455554     34579999999887655443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.82  E-value=0.0021  Score=76.10  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=63.5

Q ss_pred             CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       348 dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ...|.+||+.++  +....+..+...+.... +|+|+.|+..+.++   ..|.+||+..       +        . ...
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~  355 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRF  355 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-ccc
Confidence            347888898776  31455666655555553 48999988887643   2477888742       1        0 122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ..+..+ ....|.+++|+ +++++++...|++.+||.++..++
T Consensus       356 ~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          356 DTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             EEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             EEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            333322 22357788888 677888889999999998764333

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.79  E-value=0.0054  Score=63.89  Aligned_cols=50  Identities=8%  Similarity=-0.000  Sum_probs=40.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV~~~~~I~iwD~~T~e~  223 (787)
                      ++|..||.++++. ..+.+...+..+.+++ ..|.++..+.|++||..+++.
T Consensus        35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA   85 (297)
T ss_dssp             TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence            5899999998775 5677788999999987 346667788999999988764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.70  E-value=0.0066  Score=71.71  Aligned_cols=58  Identities=16%  Similarity=0.006  Sum_probs=41.8

Q ss_pred             CEEEEEECCCCeEEEEEeCC------CcEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907          173 TAVRFYSFQSHCYEHVLRFR------SSVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~------s~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +.|..+|.++|+.+.+++..      ..+. ........|.++.       ++.|+.||+.|++.++++...
T Consensus       138 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  209 (677)
T 1kb0_A          138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV  209 (677)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccC
Confidence            58999999999999998764      1221 1112245556543       467999999999999998764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.65  E-value=0.014  Score=68.67  Aligned_cols=94  Identities=9%  Similarity=0.019  Sum_probs=62.7

Q ss_pred             CceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       348 dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      .+.|.++|+.++..  ...|..|...+.  .|+++|+.|+....++.  .|++||+.        |          ....
T Consensus       304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g----------~~~~  363 (693)
T 3iuj_A          304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------G----------KRVR  363 (693)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------S----------CEEE
T ss_pred             CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------C----------CeeE
Confidence            45788888877643  345666766654  89999998887766553  47788863        2          1333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP  462 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~  462 (787)
                      .+... ....+..+++++|++.|+....+    +++..||+..
T Consensus       364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            34221 12357788899999877766555    7888888764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.65  E-value=0.0013  Score=77.36  Aligned_cols=94  Identities=7%  Similarity=0.072  Sum_probs=59.2

Q ss_pred             CceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCC-C--EEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          348 AGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYG-N--NINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       348 dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      ...|.+|++.++.    ++.....|...+..++|||||++|+..+.++ .  .|.+|+...       +           
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------~-----------  262 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------K-----------  262 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-------S-----------
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-------C-----------
Confidence            3468999998765    4444556767889999999999998887655 3  355554311       1           


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEeCCCC
Q 003907          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF  463 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~----dgTVhIwdl~~~  463 (787)
                      .+..+..+.  ..+....| +||+ |+..++    +++|.+|++...
T Consensus       263 ~~~~l~~~~--~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          263 DFRLLVKGV--GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             SCEEEEECS--SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             ceEEeecCC--CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            112222221  12455556 6777 555554    578999998653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.56  E-value=0.087  Score=53.12  Aligned_cols=92  Identities=14%  Similarity=0.046  Sum_probs=57.1

Q ss_pred             CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+.|.+||. +++... .+..+...+.+|+++++|+++++... +..|.+||..        +           .+..+.
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~--------g-----------~~~~~~  261 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTSN--------N-----------IIEEYP  261 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEEETT--------T-----------EEEEEE
T ss_pred             CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-CceEEEECCC--------C-----------ceEEEe
Confidence            356667776 554322 23345567899999999998776645 3458899862        2           222221


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .......+.++++ ++|++.++.+ .+.+..|+...
T Consensus       262 ~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          262 IQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             CSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            1111245899999 9998777665 45666666653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.50  E-value=0.0026  Score=64.13  Aligned_cols=93  Identities=10%  Similarity=-0.007  Sum_probs=59.6

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      +.|.+||..+.........+...+..|+++++|+++++... +..|.+||...       +          ........+
T Consensus       129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~----------~~~~~~~~~  190 (270)
T 1rwi_B          129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N----------NQVVLPFTD  190 (270)
T ss_dssp             TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C----------CEEECCCSS
T ss_pred             CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C----------ceEeecccC
Confidence            45566655443332222233346788999999998877665 44589999742       1          111111111


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                        ...+.+|++++||+.+++...++.|.+|+..
T Consensus       191 --~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          191 --ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             --CCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             --CCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence              1358899999999888888788899999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.50  E-value=0.009  Score=67.27  Aligned_cols=99  Identities=11%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCC--eE-EEEECCCCCEEEEEE------------------cCCCEEEEEeCCCCccc
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSP--IS-ALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCMR  405 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~p--Is-aLaFSpdG~lLATaS------------------~dG~~IrVWdi~~~~~~  405 (787)
                      ..|.|.+.|..+.+++.++..-..+  +. .+-|+|+++.|+|+.                  ..+..|.+||+..    
T Consensus       162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~----  237 (462)
T 2ece_A          162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK----  237 (462)
T ss_dssp             SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT----
T ss_pred             CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC----
Confidence            4588999999999999998743222  22 377899999999886                  3467899999853    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCeEEEEeCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP  462 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~LAs~S------~dgTVhIwdl~~  462 (787)
                         +          ..+.++.-|........|.|  +|||+++.+++      .+++|.+|..+.
T Consensus       238 ---~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          238 ---R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             ---T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             ---C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence               2          34555554422223455656  99999988877      567898888753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.45  E-value=5.7e-05  Score=82.39  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=45.7

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..+|.|..||..+++.+..+..|.    ...++|++..|++++.+|+ |..||...       |          ..++++
T Consensus        99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~t-------G----------~~~W~~  156 (369)
T 2hz6_A           99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKT-------R----------ELRWNA  156 (369)
T ss_dssp             EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSS-------S----------SCCCEE
T ss_pred             eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCC-------C----------CEEEeE
Confidence            357889999999999888877664    2456778888988888564 89999854       3          222333


Q ss_pred             ecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907          426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                      ..+.    ....+++.|.   ..+++++.||.++.||...
T Consensus       157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             eccc----ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            2111    1224445543   5577788999999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.45  E-value=0.032  Score=58.52  Aligned_cols=174  Identities=13%  Similarity=0.074  Sum_probs=113.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--cEEEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|+++|+++++.+.++....  ....+.+..+.|.++.  ++.+.++|..|++.+.++... .|+              
T Consensus        44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--------------  108 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--------------  108 (266)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS--------------
T ss_pred             CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC--------------
Confidence            589999999999999998655  3345666677777765  568999999999988877532 110              


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                      ...+     ++.+.                             .+.                                  
T Consensus       109 g~gl-----t~Dg~-----------------------------~l~----------------------------------  120 (266)
T 2iwa_A          109 GWGL-----ATDGK-----------------------------ILY----------------------------------  120 (266)
T ss_dssp             CCEE-----EECSS-----------------------------SEE----------------------------------
T ss_pred             eEEE-----EECCC-----------------------------EEE----------------------------------
Confidence            0112     11110                             000                                  


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CC---CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC  403 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH--~~---pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~  403 (787)
                                     ....+++|.++|..+.+.+..+.--  ..   .++.|.|. +|++.|+... ...|.+.|..+  
T Consensus       121 ---------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-~~~V~vID~~t--  181 (266)
T 2iwa_A          121 ---------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-TDCIARISAKD--  181 (266)
T ss_dssp             ---------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-SSEEEEEETTT--
T ss_pred             ---------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC-CCeEEEEECCC--
Confidence                           0012568999999998888887632  22   36788888 7866655544 55689999864  


Q ss_pred             ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907          404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       404 ~~~~~g~~~~~~~~s~~~l~~l~r-G~~----------~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~  463 (787)
                           |          ..+..+.- |..          ......|+|+||++.|.+++ ..+++.+.++.+.
T Consensus       182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                 3          23334432 210          12468999999987655554 6788888888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.40  E-value=0.14  Score=51.63  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=58.0

Q ss_pred             ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|.++|. +++... .+..+...+..|+++++|++.++... +..|.+||. .       +.         ...+.+..
T Consensus       167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~~  227 (300)
T 2qc5_A          167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T-------GE---------ISEYDIPT  227 (300)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECSS
T ss_pred             CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C-------Cc---------EEEEECCC
Confidence            45566665 333322 12234456889999999998876654 445888886 2       21         11122211


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                        ....+.+|+++++|+..++...++.|.+|+.
T Consensus       228 --~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          228 --PNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             --TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             --CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence              1235899999999997777667788999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.37  E-value=0.028  Score=62.01  Aligned_cols=94  Identities=5%  Similarity=-0.064  Sum_probs=57.7

Q ss_pred             CceEEEEECCCCcEEEE----eccCCC--CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          348 AGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~----~~aH~~--pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      ++.|..||..++.....    ..++..  |.+.|+|+|+ |.++++ ....+.|++|+..        |          .
T Consensus       239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~-d~~~~~I~~~~~~--------g----------~  299 (409)
T 3hrp_A          239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS-DQNLSSVYKITPD--------G----------E  299 (409)
T ss_dssp             TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE-ETTTTEEEEECTT--------C----------C
T ss_pred             CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE-eCCCCEEEEEecC--------C----------C
Confidence            56777888776653222    222222  2348999995 555554 4446678888863        2          0


Q ss_pred             EEEEEe-c----cc--------ccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907          421 HLYKLH-R----GI--------TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (787)
Q Consensus       421 ~l~~l~-r----G~--------~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~  461 (787)
                       +..+. .    |.        .-.....|+|++||+++++-+ .++.|+.|++.
T Consensus       300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence             11111 0    10        012378999999999888877 88999999974

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.36  E-value=0.054  Score=57.22  Aligned_cols=97  Identities=12%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC-CCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g-~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|..+|  +++. ..+..+....+.++|+|||+.|..+...+..|.+||+...     .| ..    . ....+..+. 
T Consensus       161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~----~-~~~~~~~~~-  226 (326)
T 2ghs_A          161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT----G-KAEVFIDST-  226 (326)
T ss_dssp             EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS----S-CCEEEEECT-
T ss_pred             eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc----c-CceEEEECC-
Confidence            3455555  3433 2233333456789999999987666654567999997410     01 00    0 001222221 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      + ....+..+++++||++.++...++.|.+|+.
T Consensus       227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            1 1234678999999998777777788999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.33  E-value=0.00073  Score=74.79  Aligned_cols=98  Identities=10%  Similarity=0.024  Sum_probs=73.0

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s  418 (787)
                      ++.|.+.|..+++.+.++..-..| . |+|||||++|..++.         ++..|.+||..+.                
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~----------------  119 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL----------------  119 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----------------
Confidence            579999999999999999877777 4 999999998877762         2346999998652                


Q ss_pred             ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCeEEEEeCCCCC
Q 003907          419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG  464 (787)
Q Consensus       419 ~~~l~~l~rG~-----~~a~I~slaFSpDg~~LAs~S~--dgTVhIwdl~~~g  464 (787)
                       ..+.++.-+.     ....-..++|+|||++|.++..  +++|.|+|+....
T Consensus       120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence             2344443211     0112346999999999998874  6899999998753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.30  E-value=0.029  Score=57.56  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=60.3

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS----pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      .+.|..||.. ++... +..+......++|+    |+|+.|..+...+..|.+||+...      |..     .....+.
T Consensus       152 ~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~~-----~~~~~~~  218 (314)
T 1pjx_A          152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AKI-----ENKKVWG  218 (314)
T ss_dssp             CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TEE-----EEEEEEE
T ss_pred             CCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Ccc-----ccceEEE
Confidence            3456666655 44332 22333456889999    999766555544556999997411      100     0000111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .+. +.....+..|+|++||+++++...++.|.+|+.+
T Consensus       219 ~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          219 HIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             ECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            111 1110347889999999988888888999999865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.29  E-value=0.044  Score=57.05  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      ....|+++++|++.++. . + -|.+|+..        |          ..+..+...   ..+.+++|++|++.|.+++
T Consensus       240 ~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~~~~---~~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHIPTP---GTASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             CCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEEECS---SCCCEEEECTTSCEEEEEE
T ss_pred             CCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEEECC---CceeEEEEeCCCCEEEEEc
Confidence            34578999999977655 3 3 38889862        3          344444322   2478899999999999998


Q ss_pred             CCCeEEE
Q 003907          451 SKGTCHV  457 (787)
Q Consensus       451 ~dgTVhI  457 (787)
                      .++..++
T Consensus       296 ~~~l~~~  302 (305)
T 3dr2_A          296 GPCLWML  302 (305)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            8754433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.27  E-value=0.038  Score=57.82  Aligned_cols=57  Identities=7%  Similarity=-0.073  Sum_probs=46.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                      ..|+.+|+++|+.+.++......+  .|....+.|-+..  ++.+.+||+.|++.+.++..
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~  125 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY  125 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence            489999999999999999887654  3666666666655  66899999999998888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.22  E-value=0.032  Score=58.55  Aligned_cols=56  Identities=5%  Similarity=-0.017  Sum_probs=45.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEE--EEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCM--VRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|+.+|+++|+.+.++ +....+.  |....+.|-+..  ++.+.+||+.|++.+.++..
T Consensus        75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            46999999999999999 7776543  777776666655  67899999999999888864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.19  E-value=0.23  Score=49.91  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+||..        +.         ...+.+..
T Consensus       209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~~  269 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQT  269 (300)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECCS
T ss_pred             CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECCc
Confidence            45666666 333322 23344567889999999997776644 3458888862        21         12222221


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                        ....+.+|++++||++.++.. . .|..|+.
T Consensus       270 --~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          270 --ENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             --TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             --cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence              123578999999998666554 4 6666664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.19  E-value=0.0055  Score=68.66  Aligned_cols=56  Identities=9%  Similarity=-0.129  Sum_probs=44.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t  229 (787)
                      ++|.++|+.+++.+.++.....- .|.+++  +.|.|+.           ++.|.++|..|++.+.+|..
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            58999999999999999754322 788887  6666654           35799999999998888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.14  E-value=0.0039  Score=68.19  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=68.3

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      +|.++|..+++.+.++.....+  .++|||||++|..+..         ++..|.+||+...                 .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-----------------~  108 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----------------L  108 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-----------------c
Confidence            8999999999999999876666  8999999999998863         2456899998531                 2


Q ss_pred             EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCeEEEEeCCC
Q 003907          421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSP  462 (787)
Q Consensus       421 ~l~~l~rG-----~~~a~I~slaFSpDg~~LAs~S~--dgTVhIwdl~~  462 (787)
                      .+.++.-+     .+...-..++|||||++|.+++.  +++|.++| ..
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            23322211     00012457999999999999874  47899999 64

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.07  E-value=0.068  Score=63.17  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=40.5

Q ss_pred             CEEEEEECCCCeEEEEEeCC-C--cEEEEEe----cCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-S--SVCMVRC----SPRIVAVGL-------ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s--~V~sV~~----s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +.|.-+|.++|+.+.+.+.. .  ..+.+..    ....|+++.       ++.|+.||+.|+++++++.+.
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  202 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTV  202 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEeccc
Confidence            68999999999999888753 1  1111111    234555543       357999999999999998753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.04  E-value=0.11  Score=53.70  Aligned_cols=57  Identities=9%  Similarity=-0.014  Sum_probs=45.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                      ..|+.+|+++|+.+.++..+...+  .+....+.|-+..  ++.+++||..|++.+.++..
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            589999999999999999887653  4455566666554  66899999999998888763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.99  E-value=0.2  Score=53.22  Aligned_cols=57  Identities=4%  Similarity=-0.110  Sum_probs=41.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEE------EEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVC------MVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~------sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|..+|.++|+.+........+.      ........|.++. ++.|+.+|+.+++.+++...
T Consensus       153 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          153 GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            579999999999999888765442      1222345666655 56799999999999888763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.99  E-value=0.002  Score=70.77  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=71.0

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---------cCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS---------~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      .|.+.|..+++.+.++..-..|  .++|+|||++|..+.         +++..|.+||+.+       +          .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~  107 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L  107 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence            8999999999999999876678  799999999998887         2355799999865       2          3


Q ss_pred             EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCeEEE--EeCCC
Q 003907          421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP  462 (787)
Q Consensus       421 ~l~~l~rG-~~----~a~I~slaFSpDg~~LAs~S~--dgTVhI--wdl~~  462 (787)
                      .+.++.-| ..    ......++|||||++|.++..  ..++.+  +|+..
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            45555322 00    012346999999999999874  467888  88765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.91  E-value=0.028  Score=65.26  Aligned_cols=218  Identities=12%  Similarity=0.067  Sum_probs=126.1

Q ss_pred             CEEEEEECCCCeEEEEEeCC--CcEEEEEe-c-C--CeEEEEe-------------------CCeEEEEECCCCceeEEE
Q 003907          173 TAVRFYSFQSHCYEHVLRFR--SSVCMVRC-S-P--RIVAVGL-------------------ATQIYCFDALTLENKFSV  227 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~--s~V~sV~~-s-~--~~LaV~~-------------------~~~I~iwD~~T~e~l~tl  227 (787)
                      ++|.+.|+++.+++..++.+  .....+++ + +  ++|.++.                   ++.+.+.|..|++..+++
T Consensus       112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI  191 (595)
T 1fwx_A          112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV  191 (595)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence            68999999999999977654  46788886 3 3  6777663                   125899999999999998


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCC-ceeEeeehhhhhh
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS-SLVARYAMEHSKQ  304 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g-~lva~~a~d~sk~  304 (787)
                      ....+|+              -++++|  +|+..+....   +.+.. .+..+..        .-. ..|..  +   +.
T Consensus       192 ~Vgg~pd--------------~~~~spdGk~~~vt~~~s---e~~~~-i~~~~~~--------~~d~v~V~~--~---~~  240 (595)
T 1fwx_A          192 LVSGNLD--------------NCDADYEGKWAFSTSYNS---EKGMT-LPEMTAA--------EMDHIVVFN--I---AE  240 (595)
T ss_dssp             EESSCCC--------------CEEECSSSSEEEEEESCT---TCCSS-HHHHTCC--------SEEEEEEEE--H---HH
T ss_pred             EeCCCcc--------------ceEECCCCCEEEEEecCc---ccCcc-hhhcccc--------ccceEEEee--c---cc
Confidence            8533542              367777  6665554321   00000 0000000        000 00000  0   00


Q ss_pred             hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC--CcE-EEEeccCCCCeEEEEECCCC
Q 003907          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSG  381 (787)
Q Consensus       305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s--~~~-v~~~~aH~~pIsaLaFSpdG  381 (787)
                      ...            ..+++           +.        ..-+.|.|.|..+  ++. +..+..-. ...++.|+|||
T Consensus       241 ~~~------------~v~~G-----------k~--------~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDG  288 (595)
T 1fwx_A          241 IEK------------AIAAG-----------DY--------QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDK  288 (595)
T ss_dssp             HHH------------HHHHT-----------CS--------EEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTS
T ss_pred             eeE------------eccCC-----------Ce--------eEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCC
Confidence            000            00000           00        0014599999998  555 56665432 33578999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          382 TLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       382 ~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      +++..++.....|.|+|+..... .+  |.    ++.......++.-|.   .-..++|+|||....+.-.|++|-+|++
T Consensus       289 k~v~V~~~~s~~VsVid~~~~~~~~~--~~----l~~~~~v~~~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          289 KHLCVAGKLSPTVTVLDVTRFDAVFY--EN----ADPRSAVVAEPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             SEEEEECTTSSBEEEEEGGGHHHHHH--SC----CCGGGGEEECCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CEEEEeCCCCCeEEEEECcccccccc--cc----cCcccceEEEcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            99999888777899999863100 00  00    011112333443332   3678999999944455567999999999


Q ss_pred             CC
Q 003907          461 SP  462 (787)
Q Consensus       461 ~~  462 (787)
                      +.
T Consensus       360 ~~  361 (595)
T 1fwx_A          360 ED  361 (595)
T ss_dssp             HH
T ss_pred             hH
Confidence            76

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.86  E-value=0.061  Score=57.15  Aligned_cols=79  Identities=5%  Similarity=0.040  Sum_probs=48.4

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEEEEE-ecccccccEEEEEEccCCCEEEE
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHLYKL-HRGITSATIQDICFSHYSQWIAI  448 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s-~~~l~~l-~rG~~~a~I~slaFSpDg~~LAs  448 (787)
                      .++.|+|||||+.|..++..++.+..++....  .+  +...   ... ...+..+ .+|    ....|++++||+++++
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~--~~--~~~~---~~~~~~~~~~~g~~g----~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADL--SN--LQLT---DAELGSKIERYSEKP----ICDGISIDKDHNIYVG  264 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHH--TC--TTCC---HHHHHTTCEEEEECC----SCSCEEECTTCCEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHh--cC--CCCC---hhhhhcceEecccCC----CCceEEECCCCCEEEE
Confidence            36789999999999988887764444432110  00  0000   000 0000111 122    2456999999999999


Q ss_pred             EeCCCeEEEEeC
Q 003907          449 VSSKGTCHVFVL  460 (787)
Q Consensus       449 ~S~dgTVhIwdl  460 (787)
                      ...+++|.+|+.
T Consensus       265 ~~~~~~V~~~d~  276 (343)
T 2qe8_A          265 DLAHSAIGVITS  276 (343)
T ss_dssp             EGGGTEEEEEET
T ss_pred             ccCCCeEEEEEC
Confidence            999999999997

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.75  E-value=0.77  Score=48.65  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=58.9

Q ss_pred             cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      +..+|.+..+|..+++.+.....  .....+..+  +..|..++.+|. +..+|..+       |          ..+++
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~  302 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWT  302 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred             EecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEe
Confidence            34678999999999988766543  334455543  455666666565 88899754       3          34555


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .... ....+.....  .+..|.+++.+|.+++||..+
T Consensus       303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            4311 1111222222  256788999999999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.66  E-value=0.71  Score=47.67  Aligned_cols=92  Identities=12%  Similarity=0.009  Sum_probs=54.9

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~  423 (787)
                      +.|..+|..+++.....  +....+.++|+|||+.|..+....     ..|.+|++...      +         .....
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------~---------l~~~~  231 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------A---------LHDRR  231 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------E---------EEEEE
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------C---------ccCCe
Confidence            56777777666543332  334567899999999887776642     56899987431      0         00111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      .+... .......|++++||++. +++.+ .|++|+.
T Consensus       232 ~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~  265 (305)
T 3dr2_A          232 HFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS  265 (305)
T ss_dssp             EEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEECT
T ss_pred             EEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEECC
Confidence            11110 11234568999999944 44444 4888875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.57  E-value=0.095  Score=61.80  Aligned_cols=58  Identities=16%  Similarity=0.022  Sum_probs=42.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCc------------EEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEec
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~------------V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +.|.-+|.++|+.+.+++....            ...+......|.++. ++.|+.+|+.|++.+++....
T Consensus        87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~  157 (677)
T 1kb0_A           87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF  157 (677)
T ss_dssp             GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence            4788899999999999876531            123344455666654 678999999999999888753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.52  E-value=0.15  Score=52.39  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      +.+..+|. +++.+..+......+.++.++++|++.+ ++.+|. |..||. .       |          ..++.+.-+
T Consensus       235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~~  293 (330)
T 3hxj_A          235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFETG  293 (330)
T ss_dssp             TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEECS
T ss_pred             CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEcC
Confidence            34444442 3344444444444445567787887664 555454 777774 2       3          244444322


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                        ...+.++.+.+||+ |..++.+|.+++......
T Consensus       294 --~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          294 --SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             --SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             --CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence              23467788888887 566889999999877643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.48  E-value=0.39  Score=50.24  Aligned_cols=95  Identities=9%  Similarity=-0.021  Sum_probs=62.8

Q ss_pred             CCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          347 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      .++.+.++|..+.+.+.+|..- ...   ..+++||+.|..+.. +..|.++|..+.                 ..+..+
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~g-s~~l~viD~~t~-----------------~v~~~I  142 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDG-TSILYEIDPHTF-----------------KLIKKH  142 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECS-SSEEEEECTTTC-----------------CEEEEE
T ss_pred             cCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECC-CCeEEEEECCCC-----------------cEEEEE
Confidence            4678999999999999998643 222   335567877776654 556999997542                 233333


Q ss_pred             ecc---cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          426 HRG---ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       426 ~rG---~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .-|   .....+..+.|. ||+..+..-.+++|.+-|..+.
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG  182 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred             EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence            322   111236788888 8866666657888999887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.42  E-value=0.65  Score=48.50  Aligned_cols=57  Identities=4%  Similarity=-0.007  Sum_probs=48.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +++.+||.++.+.+.++.+...=+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            6899999999999999998776567777777777765 56799999999998888864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.37  E-value=0.31  Score=51.09  Aligned_cols=57  Identities=9%  Similarity=-0.128  Sum_probs=49.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +++.+||.++.+.+.++.+...-+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            6899999999999999998776677778788888765 56899999999999888874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.32  E-value=0.18  Score=59.65  Aligned_cols=57  Identities=23%  Similarity=0.078  Sum_probs=41.8

Q ss_pred             CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|.-+|.++|+.+.+++....           + ..+......|.++. ++.|+.+|+.|++.+++...
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            4688999999999999865421           0 12233455666654 67899999999999988765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.00  E-value=1.9  Score=50.49  Aligned_cols=58  Identities=14%  Similarity=0.012  Sum_probs=40.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-----cEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +.|.-+|.++|+.+.+++...     .+. .-......|.++.       ++.|+.||+.|++.++++...
T Consensus       127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  197 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence            589999999999999887531     111 0111235555553       257999999999999998753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.93  E-value=0.037  Score=65.04  Aligned_cols=117  Identities=8%  Similarity=-0.001  Sum_probs=70.7

Q ss_pred             cCCcccccccccc-ccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC------------CEEEE
Q 003907          331 PNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG------------NNINI  396 (787)
Q Consensus       331 ~s~~~~~~~~~~~-s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG------------~~IrV  396 (787)
                      ++++++....... .+....+|+|||+.+++.+.. +...  ....++|+ ||+.|+.++.++            ..|.+
T Consensus       136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~  212 (693)
T 3iuj_A          136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF  212 (693)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred             ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence            4445544333222 233346899999999986543 2211  13567899 999999888763            34888


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPFG  464 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~~g  464 (787)
                      |++....             .....+++.. +.+...+.+++|||||++|+..+.+    ..++++++....
T Consensus       213 ~~lgt~~-------------~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          213 HRLGTAQ-------------EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             EETTSCG-------------GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             EECCCCc-------------ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            8874310             0012333321 1012236789999999999776543    478999987643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.86  E-value=0.46  Score=55.78  Aligned_cols=57  Identities=19%  Similarity=-0.051  Sum_probs=41.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcE------------EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSV------------CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V------------~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|.-+|.++|+.+.+++.....            ..+......|.++. +..|+.+|+.|++.+++...
T Consensus        76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            47889999999999988654211            12233445566654 67899999999999988865

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.84  E-value=0.0025  Score=69.23  Aligned_cols=92  Identities=10%  Similarity=0.094  Sum_probs=40.1

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCC-eE-EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSP-IS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~p-Is-aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      .+|.|..||..+++.+..+..+... +. +.+++ ++..|++++.+| .|..||..+       |          ..+++
T Consensus        57 ~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~t-------G----------~~~w~  117 (369)
T 2hz6_A           57 NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLT-------G----------EKQQT  117 (369)
T ss_dssp             TTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEE-EEEEECCC------------------------
T ss_pred             CCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCC-EEEEEECCC-------C----------cEEEE
Confidence            5778888888887766555433210 10 11112 344566677656 489999864       4          34555


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      +..+.      ...++|++..|++++.|++++.||....
T Consensus       118 ~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A          118 LSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             ---------------------EEEEEEEEEEECCCSSSS
T ss_pred             ecCCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence            43321      2456789999999999999999998753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.82  E-value=0.54  Score=54.17  Aligned_cols=25  Identities=4%  Similarity=-0.076  Sum_probs=19.7

Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .+...+..|.+++.|++++.||..+
T Consensus       470 ~~~t~gg~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          470 TLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             CEEETTTEEEEECTTSEEEEEETTT
T ss_pred             eEEECCCEEEEEcCCCeEEEEECCC
Confidence            3444567788899999999999876

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.67  E-value=1.5  Score=47.62  Aligned_cols=100  Identities=12%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             CceEEEEEC-------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          348 AGIVVVKDF-------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       348 dG~V~IwDl-------~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      +|.+..|++       .+.+.+++|.-- +.+-.+..++....|..+-++ .-|..++..+.  ...          ...
T Consensus       152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~~----------~~~  217 (355)
T 3amr_A          152 EGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GGS----------NGT  217 (355)
T ss_dssp             SSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SCS----------CCE
T ss_pred             CCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CCC----------Cce
Confidence            466666665       233567777654 467788888877777778774 44555555442  100          112


Q ss_pred             EEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCeEEEEeCC
Q 003907          421 HLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS  461 (787)
Q Consensus       421 ~l~~l~rG~~~a~I~slaF--SpDg~-~LAs~S-~dgTVhIwdl~  461 (787)
                      .+..+..+...+.+-.|++  .+|++ ||.+++ .+.+.+|||..
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            3333322333456888888  67777 777777 67899999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.56  E-value=0.23  Score=57.72  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             cCCCceEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907          345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (787)
Q Consensus       345 ~~~dG~V~IwDl~s~~------------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~  412 (787)
                      ...+.+|.++|+.+.+            .+.++..-.+| ..++|+|+| .+.+...-+..|-+||+.... +...|.  
T Consensus       295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~-~~~~g~--  369 (595)
T 1fwx_A          295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI-RAYAGE--  369 (595)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEETTTTEEEEEEHHHHH-HHHHTC--
T ss_pred             CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEecCCcEEEEEhhHhh-hhhccc--
Confidence            3456788889988652            55666554444 678999999 666666667779999985310 000000  


Q ss_pred             cccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 003907          413 YDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS  451 (787)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I---~slaFSpDg~~LAs~S~  451 (787)
                          .....+.++.-+......   ..++++|||+||.++..
T Consensus       370 ----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          370 ----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             ----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ----ccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence                001234444433221111   12356899999998853

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.07  E-value=3.7  Score=42.29  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=48.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +++.+||.++.+.+.++.+...=+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            6899999999999999998876678877777777765 45799999999999888874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.29  E-value=4.9  Score=40.26  Aligned_cols=71  Identities=10%  Similarity=0.008  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ..-..|+|+|++..|..+....+.|.++|...                  .....+..+.  .....|++.  +.+|..+
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------------------~~~~~~~~~~--~~P~gi~~d--~~~lyva  224 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------------------PGRRKVLEGL--QYPFAVTSY--GKNLYYT  224 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTE------------------EEEEEEEECC--CSEEEEEEE--TTEEEEE
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------------------CceEEEecCC--CCceEEEEe--CCEEEEE
Confidence            34578999999887777777667799999732                  1122222221  124566654  4555555


Q ss_pred             e-CCCeEEEEeCCC
Q 003907          450 S-SKGTCHVFVLSP  462 (787)
Q Consensus       450 S-~dgTVhIwdl~~  462 (787)
                      . ..+.|.+++...
T Consensus       225 ~~~~~~v~~~d~~~  238 (267)
T 1npe_A          225 DWKTNSVIAMDLAI  238 (267)
T ss_dssp             ETTTTEEEEEETTT
T ss_pred             ECCCCeEEEEeCCC
Confidence            4 568888888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.13  E-value=1.1  Score=51.65  Aligned_cols=85  Identities=20%  Similarity=0.352  Sum_probs=54.1

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      ..|.|.-||+.+++.+-+++.+. ++..-.+...|.++..++.|| .++.||.++       |          +.+++++
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg-~l~A~D~~t-------G----------~~lW~~~  524 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDG-YFKAFDAKS-------G----------KELWKFQ  524 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCC-cEEEEECCC-------C----------CEEEEec
Confidence            46899999999999887766432 222211222466777788866 599999865       5          5777776


Q ss_pred             cccccccEEEEEEccCCC-EEEEEeC
Q 003907          427 RGITSATIQDICFSHYSQ-WIAIVSS  451 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~-~LAs~S~  451 (787)
                      -+.. ..-.-+.|..||+ |+++.+.
T Consensus       525 ~~~g-~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          525 TGSG-IVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CSSC-CCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCC-cccCceEEEECCEEEEEEEcc
Confidence            4321 1112367788986 5655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.57  E-value=0.29  Score=58.28  Aligned_cols=96  Identities=15%  Similarity=0.071  Sum_probs=56.5

Q ss_pred             ceEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          349 GIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       349 G~V~IwDl~s~-~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      ..|.++|+.++ +.+. .+..   ....++|+|||+.|+..+.+.    ..|.++++..       +.      .....+
T Consensus       201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-------~~------~~~~lv  264 (751)
T 2xe4_A          201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-------LQ------SEDVCL  264 (751)
T ss_dssp             EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-------CG------GGCEEE
T ss_pred             EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-------Cc------hhcEEE
Confidence            46888888887 5321 1211   134688999999888777642    2466666632       10      001233


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCCC
Q 003907          423 YKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPF  463 (787)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~~  463 (787)
                      ++.   .......++.|||||++|+..+.+   ..|.++|+...
T Consensus       265 ~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          265 YEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             Eec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            332   112235678999999999887743   34667777653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.48  E-value=12  Score=42.00  Aligned_cols=48  Identities=10%  Similarity=0.177  Sum_probs=41.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT  220 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~T  220 (787)
                      ++++++|+.+.+.++...++..|.-=+| +++.|+...++.||-|++..
T Consensus        86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~  134 (494)
T 1bpo_A           86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG  134 (494)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSS
T ss_pred             CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccC
Confidence            6899999999999999999987644444 78999999999999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.92  E-value=7.7  Score=44.49  Aligned_cols=58  Identities=12%  Similarity=0.065  Sum_probs=41.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-----cEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~  230 (787)
                      +.|.-+|.++|+.+.+.+...     .+. .-......|.++.       ++.|+.||+.|++.++++...
T Consensus       125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  195 (571)
T 2ad6_A          125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence            579999999999998887543     221 1111235555554       468999999999999988753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.82  E-value=5.6  Score=46.15  Aligned_cols=59  Identities=15%  Similarity=0.046  Sum_probs=42.9

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCcE-----------------------------------------EEEEecCCeEEEEeC
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRSSV-----------------------------------------CMVRCSPRIVAVGLA  210 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s~V-----------------------------------------~sV~~s~~~LaV~~~  210 (787)
                      ++.|+-+|.++|+.+..+....+.                                         .+++....+|.++..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            468999999999999888754321                                         123334466666654


Q ss_pred             C-----------------eEEEEECCCCceeEEEEec
Q 003907          211 T-----------------QIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       211 ~-----------------~I~iwD~~T~e~l~tl~t~  230 (787)
                      +                 .|+.+|+.|++.++...+.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence            2                 7999999999999888753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=92.46  E-value=12  Score=39.10  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+.|.+.|+........+...-.....|+++|++..|.-+.... ..|..+++.        |.          ....+.
T Consensus        98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~  159 (316)
T 1ijq_A           98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV  159 (316)
T ss_dssp             TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred             CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence            34566666654333222332334568999999655554444422 456666652        31          112221


Q ss_pred             cccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~  461 (787)
                      .. .-..-..|+|+++++.|..+. ..++|..++++
T Consensus       160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            11 112467899999877766554 56789999876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=92.30  E-value=3.3  Score=42.17  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      +.|..+| .+++.+..+..+...+.+++++++|++.+. +.++. +..+|..        |          ..++.+..+
T Consensus       195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~~--------g----------~~~~~~~~~  253 (330)
T 3hxj_A          195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINPD--------G----------TEKWRFKTG  253 (330)
T ss_dssp             SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECTT--------S----------CEEEEEECS
T ss_pred             CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECCC--------C----------CEeEEeeCC
Confidence            6778888 677777777666677899999999987764 44354 6666631        2          244444332


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                        ...+.++.+.++++ |.+++.+|.+..||.
T Consensus       254 --~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          254 --KRIESSPVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             --SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred             --CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence              12234466666664 667788888888873

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.73  E-value=4.7  Score=46.74  Aligned_cols=49  Identities=8%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             EEEEEECCCCeEEEEEeCCC---cEEEEEe-cCCeEEEEeC-------CeEEEEECCCCc
Q 003907          174 AVRFYSFQSHCYEHVLRFRS---SVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE  222 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~s---~V~sV~~-s~~~LaV~~~-------~~I~iwD~~T~e  222 (787)
                      .+.+||.++++-...-..+.   .-.++.+ +.+++++|..       +.+.+||..+.+
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            69999999876443222222   2234445 5677777652       358888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.78  E-value=24  Score=40.51  Aligned_cols=56  Identities=9%  Similarity=-0.098  Sum_probs=40.5

Q ss_pred             EEEEEECCCCeEEEEEeCCCcE----------EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEe
Q 003907          174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~s~V----------~sV~~s~~~LaV~-~~~~I~iwD~~T~e~l~tl~t  229 (787)
                      .|.-+|.++|+.+.+++.....          ..+......|.++ .+..|+.+|+.|++.+++...
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            4888999999999988764321          1223344555554 567899999999999988764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=89.95  E-value=19  Score=36.97  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=42.2

Q ss_pred             eEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEc
Q 003907          372 ISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFS  440 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~--rG~~~a~I~slaFS  440 (787)
                      ...|+++++|++.++....         ...|.+||..        |          ..+..+.  .|.....+.++++ 
T Consensus       231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--------G----------~~~~~~~~~~g~~~~~~~~~~~-  291 (322)
T 2fp8_A          231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--------G----------NILEVIPLPPPFAGEHFEQIQE-  291 (322)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--------S----------CEEEEEECCTTTTTSCCCEEEE-
T ss_pred             CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--------C----------CEEEEEECCCCCccccceEEEE-
Confidence            5679999999987776441         1235555531        3          2333332  2321234677777 


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC
Q 003907          441 HYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       441 pDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .+++..++....+.|.+|++..
T Consensus       292 ~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          292 HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTEEEEECSSCSEEEEEEC--
T ss_pred             eCCEEEEeecCCCceEEEeccc
Confidence            4666666666788899999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=89.39  E-value=6.4  Score=42.78  Aligned_cols=98  Identities=13%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----CCCE--EEEEEcCC---CEEEEEeCCCCcccCCCCCCccccC
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----SGTL--LVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWN  416 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp----dG~l--LATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~  416 (787)
                      ...+-+.|||+ +++.+..+..  +.++.+..-|    .|+.  ||.++..+   ..|+||++.+..             
T Consensus        47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-------------  110 (355)
T 3amr_A           47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-------------  110 (355)
T ss_dssp             ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-------------
T ss_pred             cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-------------
Confidence            44578999999 8888888864  5566666655    2332  55555543   679999885420             


Q ss_pred             CcceEEEEEec-----ccccccEEEEEE--ccC-CC-EEEEEeCCCeEEEEeCCC
Q 003907          417 SSHVHLYKLHR-----GITSATIQDICF--SHY-SQ-WIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       417 ~s~~~l~~l~r-----G~~~a~I~slaF--SpD-g~-~LAs~S~dgTVhIwdl~~  462 (787)
                         ..+..+-+     +..-..++.+|+  +|+ ++ ++.+...+|.+..|++..
T Consensus       111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~  162 (355)
T 3amr_A          111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA  162 (355)
T ss_dssp             ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred             ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence               12333311     011134777888  775 44 688888889999999864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=88.12  E-value=8.8  Score=38.35  Aligned_cols=95  Identities=7%  Similarity=0.050  Sum_probs=58.9

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      .+.|.++|+........+.........|+|+|++..|..+......|.++++.        |.       ....+  ...
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--------g~-------~~~~~--~~~  119 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--------GT-------QRRVL--FDT  119 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEE--ECS
T ss_pred             CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--------CC-------CEEEE--EEC
Confidence            56788888876554333333334568999999876666666656678888873        21       00111  111


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC---CCeEEEEeCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS  461 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~---dgTVhIwdl~  461 (787)
                      +.  .....|+++|++.+|..+..   .+.|..++++
T Consensus       120 ~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A          120 GL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             SC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            21  24688999998776655553   3678777765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.24  E-value=35  Score=36.62  Aligned_cols=50  Identities=10%  Similarity=-0.037  Sum_probs=32.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLE  222 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e  222 (787)
                      ..|+.+++..++....+.....+.+|++++  +.|.++.  .++|+.+++.+..
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~  149 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN  149 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC
Confidence            468888888776655555445677888764  4555543  3468888876554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.23  E-value=4.2  Score=45.46  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=69.6

Q ss_pred             CCceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          347 NAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH----~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      .+..||.-++......+.++.-    -..|..+..||+|++||..+.+  .|.|-.+-....    .... +......+.
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~----~~~~-~~~~~~~q~  111 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYS----NVED-VSIQDAFQI  111 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCS----CCCC-HHHHHTTEE
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccc----cCcc-cccccccce
Confidence            4567777777754433444332    2367889999999999998763  589998832110    0000 000011233


Q ss_pred             EEEecccc----cccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907          423 YKLHRGIT----SATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       423 ~~l~rG~~----~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~  462 (787)
                      +.++-|..    ...|..+-|+|-|   ..|++-..|++|++||+..
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            34443321    3569999999964   6899999999999999986

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=87.16  E-value=22  Score=44.42  Aligned_cols=95  Identities=9%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ..|+|||+...+.+. ....+. .|..+...-.|.+++.|+.... |.++..+..                ...+..+-|
T Consensus       904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~----------------~~~L~~~a~  965 (1158)
T 3ei3_A          904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM----------------EGNFEEIAR  965 (1158)
T ss_dssp             TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT----------------TTEEEEEEE
T ss_pred             CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC----------------CCeEEEEEe
Confidence            467788877654333 111121 1333334345778888876443 554433221                036667766


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      ......++++.|=.|+ .++.+..+|.++++..++
T Consensus       966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            6556678999987665 567788999999999876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=87.07  E-value=36  Score=39.28  Aligned_cols=57  Identities=9%  Similarity=-0.046  Sum_probs=39.8

Q ss_pred             CEEEEEEC-CCCeEEEEEeCCCc------------EEEEEe--cCCe----EEEE-eCCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSF-QSHCYEHVLRFRSS------------VCMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdl-ktg~~v~tL~f~s~------------V~sV~~--s~~~----LaV~-~~~~I~iwD~~T~e~l~tl~t  229 (787)
                      +.|.-+|. ++|+.+.+.+....            ...+..  ....    |.++ .+..++.+|+.|++.+++...
T Consensus        73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~  149 (599)
T 1w6s_A           73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN  149 (599)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence            46888999 99999998875431            112334  2222    5555 567899999999999887653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.85  E-value=16  Score=40.01  Aligned_cols=71  Identities=13%  Similarity=-0.005  Sum_probs=44.2

Q ss_pred             eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEE
Q 003907          372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       372 IsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-~rG~~~a~I~slaFSpDg~~LAs~  449 (787)
                      ...++++| +|.++++-.. ...|..|+...       +           .+..+ ..+. ...-..|+|+|||++|..+
T Consensus       228 p~giavdp~~g~lyv~d~~-~~~V~~~~~~~-------~-----------~~~~~~~~~~-~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWN-AGQVFRYDFTT-------Q-----------ETTPLFTIQD-SGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             CCCEEECTTTCCEEEEETT-TTEEEEEETTT-------T-----------EEEEEEECSS-SSCCEEEEECTTSSEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECC-CCEEEEEECCC-------C-----------cEEEEEEcCC-CCcceeEEEcCCCCEEEEE
Confidence            35688999 7776665444 45588888632       1           11111 1111 1235789999999955444


Q ss_pred             -eCCCeEEEEeCCC
Q 003907          450 -SSKGTCHVFVLSP  462 (787)
Q Consensus       450 -S~dgTVhIwdl~~  462 (787)
                       ...+.|..|+.+.
T Consensus       288 d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          288 VVNQHYILRSDYDW  301 (430)
T ss_dssp             ETTTTEEEEEEEET
T ss_pred             ECCCCEEEEEeCCc
Confidence             5678899988764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=86.81  E-value=5.1  Score=47.47  Aligned_cols=30  Identities=7%  Similarity=0.035  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCCEEEEEEcC--CCEEEEEeCC
Q 003907          371 PISALCFDPSGTLLVTASVY--GNNINIFRIM  400 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~  400 (787)
                      -...+.|||||++|+..+..  ...|.++|+.
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            35678999999998876543  2346667764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=85.80  E-value=39  Score=35.72  Aligned_cols=93  Identities=8%  Similarity=-0.043  Sum_probs=51.2

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-e
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H  426 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-~  426 (787)
                      +.|.+.|+........+...-..-..|+++|.+..|.-+.... ..|..+++.        |.          ....+ .
T Consensus       138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~  199 (349)
T 3v64_C          138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD  199 (349)
T ss_dssp             TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred             CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence            3455555543322222223334458899999655555554433 557777652        21          11111 1


Q ss_pred             cccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~  461 (787)
                      .+.  ..-..|+|+|+++.|..+. ..++|..++++
T Consensus       200 ~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          200 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            111  2367899998777666554 56788888875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.06  E-value=28  Score=44.58  Aligned_cols=48  Identities=10%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT  220 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~T  220 (787)
                      ++++|+|+.+.+.+++..++..|.-=+| +++.|+...++.||-|++..
T Consensus        86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~  134 (1630)
T 1xi4_A           86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG  134 (1630)
T ss_pred             CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence            6899999999999999999987755455 77999999899999999853

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=84.53  E-value=48  Score=35.76  Aligned_cols=95  Identities=16%  Similarity=0.084  Sum_probs=54.3

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      +.|.+.|+........+...-.....|+++|.+.+|.-+.. +...|...++.        |.        .... -+..
T Consensus       181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~--------~~~~-~~~~  243 (400)
T 3p5b_L          181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV--------DIYS-LVTE  243 (400)
T ss_dssp             TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC--------SCEE-EECS
T ss_pred             CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC--------ccEE-EEEC
Confidence            45666666544433333333345689999996555554443 22347777752        21        0111 1112


Q ss_pred             ccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP  462 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~  462 (787)
                      +.  .....|+|+++++.|..+. ..++|..++++.
T Consensus       244 ~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          244 NI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            21  2468899999888776664 467888888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=84.48  E-value=6.7  Score=40.42  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (787)
Q Consensus       359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (787)
                      .+.+.+|..+ .....++|+++|+++++-.. +..|..||..        +          .....+..+   .....|+
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~~---~~p~gia   78 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATVE---GKVSGLA   78 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEECS---SEEEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeCC---CCceeEE
Confidence            3456666544 34678999999997776545 4457777752        2          122222212   3578999


Q ss_pred             EccCCCEEEEEeCCCe--EEEEeC
Q 003907          439 FSHYSQWIAIVSSKGT--CHVFVL  460 (787)
Q Consensus       439 FSpDg~~LAs~S~dgT--VhIwdl  460 (787)
                      |++||+++++......  |..++.
T Consensus        79 ~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           79 FTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EcCCCcEEEEeccCCcceEEEEcC
Confidence            9999997666644333  444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=84.35  E-value=93  Score=38.88  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             eEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          350 IVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      .|++.+...++.+..++.- ...|.+.+.+.  .+++.++  |..+.+|++..       +           .+.+..+-
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~~  550 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISHT  550 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeeccc
Confidence            3555555444445555432 34677767653  4666664  45577888742       1           12222221


Q ss_pred             cccccEEEEEEccC------CCEEEEEeC-CCeEEEEeCCC
Q 003907          429 ITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP  462 (787)
Q Consensus       429 ~~~a~I~slaFSpD------g~~LAs~S~-dgTVhIwdl~~  462 (787)
                      .-...|.|+++.|.      ++++|+|.. |+|++|+++..
T Consensus       551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            12347999999864      479999996 99999999963

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=84.11  E-value=47  Score=36.32  Aligned_cols=52  Identities=25%  Similarity=0.222  Sum_probs=34.6

Q ss_pred             CceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          348 AGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      .+.|..+|..++.....+... ...-..|+|+|+|++|..+....+.|.+|+.
T Consensus       247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            457888887765532222211 1235689999999977777776777888875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.87  E-value=23  Score=39.78  Aligned_cols=107  Identities=7%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ..+++|+|+.+++.+..+.-.+ +|..=.|=.+ +.|+--.  ++.|--|++...              ....++++.+.
T Consensus        85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~~  146 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS  146 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC--SSEEEEEESSSS--------------CCCEEEEECCG
T ss_pred             CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc--CCeeEEecccCC--------------CCchhheecch
Confidence            4689999999998777665444 5655566322 3343333  345899998421              11244444332


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCCCcccccccc
Q 003907          428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~-------dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      -.....|.+-.-++|.+|++..+-       .|.+.+|.++. +....+.+|.
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha  198 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA  198 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence            333457888999999999986543       36788999875 3445566774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	787
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 18/108 (16%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410
             + D         F  H S I+A+CF P+G    T                   S    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG------------------SDDAT 249

Query: 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
            +     +   L           I  + FS   + +        C+V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 8/40 (20%), Positives = 12/40 (30%)

Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388
               V D +          H + +S L     G  + T S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
              H   + ++ F   G  +V+ S+  +               + N+K D  + +    +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVK--------LWNLQNANNKSDSKTPNSGTCE 301

Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
           +        +  +  +   ++I   S       +
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI-MPSCMRSGSGNHKYDWNSSHVHL 422
           +   HTS +  + F   G  L T         ++R+   S +   S +   + +  +++ 
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456
                  +   I+ +CFS   +++A  +      
Sbjct: 115 SSSPS--SDLYIRSVCFSPDGKFLATGAEDRLIR 146

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 9/95 (9%), Positives = 22/95 (23%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410
           V      +      +  H+   +     PSG    +  V+GN         + +   +  
Sbjct: 40  VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99

Query: 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445
                        +  R       ++     +   
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
              H SP++ + F P  +++V+AS     I ++    +     +     D        + 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSAS-EDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHS 70

Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484
                + +    I    +  +  I +  G  H         +      +S+     ++ V
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 485 LSLPWWCTSSGISEQQCVLPPPPVTLSVVS 514
            +     T +G  E   ++ P      + S
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 20/110 (18%)

Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408
             + + D  T   +     H + +  + F   G  +++ +     + ++           
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYK-------- 277

Query: 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
                  N   +     H       +  + F   + ++   S   T  V+
Sbjct: 278 -------NKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427
              PIS   ++   T +       + ++I+    +                 VH  K H 
Sbjct: 6   LVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGN-------------KWVQVHELKEHN 51

Query: 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
           G     +  + ++  S  I    +    +V+
Sbjct: 52  G----QVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420
           I+   +A    IS +   PS +LL+  S +  ++ +                Y ++    
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITS-WDGSLTV----------------YKFDIQAK 45

Query: 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456
           ++  L        +    F   +     V +     
Sbjct: 46  NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	787
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.82
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.8
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.78
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.73
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.73
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.69
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.63
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.63
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.62
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.57
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.48
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.34
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.28
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.25
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.22
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.13
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.03
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.97
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.51
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.96
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.86
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.39
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	89.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	82.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.79

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.1e-23  Score=208.67  Aligned_cols=298  Identities=12%  Similarity=0.085  Sum_probs=197.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       ++++|++|..+| ++|||++. +++...+..|.++|..+.+.|+             .
T Consensus        13 L~GH~~~I~~l~~sp-------~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~-------------~   71 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHS-------------G   71 (317)
T ss_dssp             EECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTT-------------S
T ss_pred             EcCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEEEEeeecc-------------c
Confidence            467999999999974       356888888876 99999964 6677788889999999998864             2


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV  207 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV  207 (787)
                      .+++....                                 ..++.+|+....+....+.. ...+..+.+++  +.|++
T Consensus        72 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (317)
T d1vyhc1          72 KLLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS  118 (317)
T ss_dssp             SEEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred             cccccccc---------------------------------ccccccccccccccccccccccccceeeeccCCCceEEe
Confidence            36654321                                 14677899888887766654 45788888876  56666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +. +..+++||+.+++.+.++..+...             ...++++|  ++||.++.+..+     ..|+..+......
T Consensus       119 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~~v-----~~~~~~~~~~~~~  180 (317)
T d1vyhc1         119 ASRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTV-----RVWVVATKECKAE  180 (317)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTTCCEEEE
T ss_pred             eccCcceeEeecccceeeeEEccCCCc-------------ceeeecccCCCEEEEEeCCCeE-----EEEeeccceeeEE
Confidence            54 568999999999998888876542             34567777  788887654211     0111111000000


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                      -....+.........+........             ..+.. ....    ...+.....+..||.|++||+.+++.+..
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~~-~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISE-------------ATGSE-TKKS----GKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGG-------------CCSCC------------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EecCCCCceEEEEeeccccceeec-------------cccce-eeee----ccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            000000000000000000000000             00000 0000    00111233567899999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (787)
                      +.+|..+|.+++|+|+|++||+++.||. |+|||+..       +          ..+..+. + +...|++|+|+||++
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFHKTAP  302 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEECSSSS
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCC
Confidence            9999999999999999999999999775 99999854       2          3455564 3 345799999999999


Q ss_pred             EEEEEeCCCeEEEEe
Q 003907          445 WIAIVSSKGTCHVFV  459 (787)
Q Consensus       445 ~LAs~S~dgTVhIwd  459 (787)
                      +|++++.||+|+|||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-22  Score=212.69  Aligned_cols=275  Identities=13%  Similarity=0.046  Sum_probs=188.8

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeE----eeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~e----lls~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      +|++.|..+.|..       +++.|++|.++.++|||++.......    ....|+++|.+|++.|+.            
T Consensus        49 ~H~~~V~~v~fs~-------~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg------------  109 (337)
T d1gxra_          49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------  109 (337)
T ss_dssp             CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred             CCCCcEEEEEECC-------CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC------------
Confidence            5788899999964       46789999876699999976433222    123578899999999752            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--~~v~tL~f~-s~V~sV~~s~--~~  204 (787)
                       .+|++.+.                                 +++|++||+...  +....+..+ ..|..+.+++  .+
T Consensus       110 -~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  155 (337)
T d1gxra_         110 -CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV  155 (337)
T ss_dssp             -SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred             -CEEEEeec---------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence             26654321                                 258999998754  556666654 4788999987  56


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      |+++. +..|++||+.+++.......+..+             ...+++++  .++++++.+..+     ..|+..+.  
T Consensus       156 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------v~~l~~s~~~~~~~~~~~d~~v-----~i~d~~~~--  215 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG--  215 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred             cccccccccccccccccccccccccccccc-------------cccccccccccccccccccccc-----cccccccc--
Confidence            77655 457999999999877766655442             34577777  677777654211     11221110  


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                ..+                +.+.       ..+....+.+++..+    .++.+..+|.+++||+.+++.
T Consensus       216 ----------~~~----------------~~~~-------~~~~i~~l~~~~~~~----~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         216 ----------RQL----------------QQHD-------FTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             ----------EEE----------------EEEE-------CSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred             ----------eee----------------cccc-------cccceEEEEEccccc----ccceecccccccccccccccc
Confidence                      000                0000       000011122222222    234567899999999998876


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                      . ....|..+|.+++|+|+|++|+|++.|| .|+|||+..       +          ..+..+.   +...|.+++|||
T Consensus       259 ~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-~i~iwd~~~-------~----------~~~~~~~---~~~~v~~~~~s~  316 (337)
T d1gxra_         259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV  316 (337)
T ss_dssp             E-EECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred             c-cccccccccceEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------CEEEEcc---CCCCEEEEEEeC
Confidence            4 5678999999999999999999999966 599999854       2          3555443   335799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q 003907          442 YSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl  460 (787)
                      |+++|++++.||+|+||||
T Consensus       317 d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=1.7e-22  Score=212.69  Aligned_cols=239  Identities=12%  Similarity=0.077  Sum_probs=175.8

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +++.|+.+..+.+.+||++. .+..+++..|.++|.++++.|+             ..+||+.+.               
T Consensus        28 ~g~~l~~~~~~~v~i~~~~~-~~~~~~~~~H~~~v~~~~~sp~-------------g~~latg~~---------------   78 (311)
T d1nr0a1          28 AGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPS-------------GYYCASGDV---------------   78 (311)
T ss_dssp             TSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTT-------------SSEEEEEET---------------
T ss_pred             CCCEEEEEeCCEEEEEECCC-CceeEEEcCCCCCEEEEEEeCC-------------CCeEecccc---------------
Confidence            35678888888899999964 5677788899999999999975             237765221               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE--EEEe-CCCcEEEEEecC--CeEEEEeCC---eEEEEECCCCceeE
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE--HVLR-FRSSVCMVRCSP--RIVAVGLAT---QIYCFDALTLENKF  225 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v--~tL~-f~s~V~sV~~s~--~~LaV~~~~---~I~iwD~~T~e~l~  225 (787)
                                        +++|+|||+.+++.+  .+++ +...|.+|++++  ++|+++.++   .+++||..+++...
T Consensus        79 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~  140 (311)
T d1nr0a1          79 ------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG  140 (311)
T ss_dssp             ------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred             ------------------CceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccc
Confidence                              368999999987643  4455 456999999998  567766543   48999999988777


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      ++..|..+             ...++++|       +.                           ..             
T Consensus       141 ~l~~h~~~-------------v~~v~~~~-------~~---------------------------~~-------------  160 (311)
T d1nr0a1         141 NLTGQARA-------------MNSVDFKP-------SR---------------------------PF-------------  160 (311)
T ss_dssp             CCCCCSSC-------------EEEEEECS-------SS---------------------------SC-------------
T ss_pred             cccccccc-------------cccccccc-------cc---------------------------ee-------------
Confidence            66554432             12233322       10                           00             


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA  385 (787)
                                                         .++++..||.|++||+.+++.+..+..|..+|.+++|+|+|++|+
T Consensus       161 -----------------------------------~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         161 -----------------------------------RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             -----------------------------------EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             -----------------------------------eecccccccccccccccccccccccccccccccccccCccccccc
Confidence                                               012345689999999999999999999999999999999999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-----cccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-----~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      +++.||. |+|||+..       +          ..+..+...     .+.+.|.+|+|+|||++|++++.||+|+|||+
T Consensus       206 ~~~~d~~-v~~~d~~~-------~----------~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         206 STGGDGT-IVLYNGVD-------G----------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             EEETTSC-EEEEETTT-------C----------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccccccc-cccccccc-------c----------cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            9999776 99999854       2          233333221     12356999999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 003907          461 SPFGGDSGFQTL  472 (787)
Q Consensus       461 ~~~gg~~~~~~H  472 (787)
                      ++......+..|
T Consensus       268 ~t~~~~~~l~~~  279 (311)
T d1nr0a1         268 ATLKVEKTIPVG  279 (311)
T ss_dssp             TTTEEEEEEECC
T ss_pred             CCCcEEEEEECC
Confidence            865433333333

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=8.6e-22  Score=207.25  Aligned_cols=241  Identities=16%  Similarity=0.161  Sum_probs=176.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|+.+.|..       +++.|++|..+| ++|||+...... ...+..|.++|.+|++.|+             
T Consensus        54 ~~~H~~~v~~~~~sp-------~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d-------------  113 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-------------  113 (311)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-------------
T ss_pred             EcCCCCCEEEEEEeC-------CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc-------------
Confidence            356889999999952       467888888876 999999765443 3457788899999999864             


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C-eE
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R-IV  205 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~-~L  205 (787)
                      ..+|++++.+                               ..+.+++|++++++.+.++..+ ..|.+|+|++  + +|
T Consensus       114 ~~~l~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1         114 SKRIAAVGEG-------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             SCEEEEEECC-------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             cccccccccc-------------------------------ccccccccccccccccccccccccccccccccccceeee
Confidence            2366654321                               1257999999999999988866 4799999987  3 46


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      +++. ++.|++||+.+++....+..|..+             ...++++|  ++|                         
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~-------------i~~v~~~p~~~~l-------------------------  204 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLF-------------------------  204 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEE-------------------------
T ss_pred             ccccccccccccccccccccccccccccc-------------ccccccCcccccc-------------------------
Confidence            6554 567999999999887777665442             12233322  111                         


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                                                                                  +.+..||.|++||+.+++.+
T Consensus       205 ------------------------------------------------------------~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         205 ------------------------------------------------------------ASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             ------------------------------------------------------------EEEETTSCEEEEETTTCCEE
T ss_pred             ------------------------------------------------------------cccccccccccccccccccc
Confidence                                                                        12345789999999988877


Q ss_pred             EEec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccE
Q 003907          363 SQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATI  434 (787)
Q Consensus       363 ~~~~-------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-a~I  434 (787)
                      ..+.       +|..+|.+|+|+|+|++|||++.|| .|+|||+..       +          ..+.++..+... ..+
T Consensus       225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-~v~iwd~~t-------~----------~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVAT-------L----------KVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------T----------EEEEEEECCSSGGGCE
T ss_pred             ccccccccccccccccccccccCCCCCEEEEEeCCC-eEEEEECCC-------C----------cEEEEEECCCCccceE
Confidence            7664       6899999999999999999999966 599999864       3          466666543221 234


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          435 QDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       435 ~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .++.|  ++++|++++.||+|++||++
T Consensus       287 ~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         287 LGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            45555  55679999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6e-21  Score=201.46  Aligned_cols=262  Identities=15%  Similarity=0.105  Sum_probs=176.8

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeee------------------eccCcEEEEEEec
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS------------------KRDGPVSFLQMQP  115 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells------------------~~dg~V~~v~~lP  115 (787)
                      +|++.|..+.|+.       ++++|++|.++.++|||+.. ++....+.                  .++..|.+|++.|
T Consensus        60 ~H~~~V~~l~fs~-------dg~~lasg~d~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          60 DHTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             ECSSCCCEEEECT-------TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCcEEEEEECC-------CCCEEEEEeCCeEEEEEecc-cceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence            5889999999974       46799999877899999965 43333332                  2445688888876


Q ss_pred             CCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-Cc
Q 003907          116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SS  194 (787)
Q Consensus       116 ~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~  194 (787)
                      +             ..+|++.+.                                 +++|++||..+++.+..+..+ ..
T Consensus       132 ~-------------~~~l~s~~~---------------------------------dg~v~i~~~~~~~~~~~~~~h~~~  165 (388)
T d1erja_         132 D-------------GKFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQD  165 (388)
T ss_dssp             T-------------SSEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSC
T ss_pred             C-------------CCcceeccc---------------------------------cccccccccccccccccccccccc
Confidence            4             236654221                                 258999999999999998854 68


Q ss_pred             EEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcce
Q 003907          195 VCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (787)
Q Consensus       195 V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~  271 (787)
                      |..+.+++  ..++++. ++.|++||..+.........+...              ..+++       ...+        
T Consensus       166 v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~--------  216 (388)
T d1erja_         166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--------------TTVAV-------SPGD--------  216 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--------------EEEEE-------CSTT--------
T ss_pred             ccccccccccccccccccceeeeeeecccccccccccccccc--------------ccccc-------cCCC--------
Confidence            99999987  4555554 568999999887765544332110              01111       1000        


Q ss_pred             eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (787)
Q Consensus       272 ~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V  351 (787)
                                         +.                                                .++.+..||.|
T Consensus       217 -------------------~~------------------------------------------------~l~~~~~d~~i  229 (388)
T d1erja_         217 -------------------GK------------------------------------------------YIAAGSLDRAV  229 (388)
T ss_dssp             -------------------CC------------------------------------------------EEEEEETTSCE
T ss_pred             -------------------CC------------------------------------------------eEEEEcCCCeE
Confidence                               00                                                01234568899


Q ss_pred             EEEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907          352 VVKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (787)
Q Consensus       352 ~IwDl~s~~~v~~~-------~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~  424 (787)
                      ++||+.++..+..+       .+|..+|.+|+|+|+|++||+++.|| .|++||+.......     .............
T Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~-----~~~~~~~~~~~~~  303 (388)
T d1erja_         230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKS-----DSKTPNSGTCEVT  303 (388)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEE
T ss_pred             EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC-cEEEEeccCCcccc-----ccccccccceeee
Confidence            99999988766655       46899999999999999999999966 59999985421000     0000000112222


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ..  .+...|.+++|+|||++|++++.||+|+|||+........+.+|.
T Consensus       304 ~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         304 YI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cc--cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            22  234569999999999999999999999999998765555666664

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1e-19  Score=186.29  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=173.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+. .++....+..|.++|.++++.|+.             
T Consensus        51 L~GH~~~I~~l~~s~-------~~~~l~sgs~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~v~~~~~~-------------  109 (340)
T d1tbga_          51 LRGHLAKIYAMHWGT-------DSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG-------------  109 (340)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TTEEEEEEECSCSCEEEEEECTTS-------------
T ss_pred             ECCCCCCEEEEEECC-------CCCEEEEEECCCceeeeecc-cceeEEEEecccccEEeeEeeccc-------------
Confidence            568999999999974       367899998887 9999996 466777788899999999998742             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC----eEEEEEeCCCcE-EEEEec-CCe
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH----CYEHVLRFRSSV-CMVRCS-PRI  204 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg----~~v~tL~f~s~V-~sV~~s-~~~  204 (787)
                      .+|++.+.                                 ++++++|+....    .....+..+..+ ...... ...
T Consensus       110 ~~l~~~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (340)
T d1tbga_         110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ  156 (340)
T ss_dssp             SEEEEEET---------------------------------TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTE
T ss_pred             eeeeeecc---------------------------------cceeecccccccccccccceecccccccccccccccccc
Confidence            26654321                                 257899987653    344555544432 222222 233


Q ss_pred             EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       205 LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      +.. ..+.....++..+.........+..+             .....       ....                     
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~~~~---------------------  195 (340)
T d1tbga_         157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLS-------LAPD---------------------  195 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECCSSC-------------EEEEE-------ECTT---------------------
T ss_pred             ccccccccccccccccccccccccccccee-------------Eeeec-------cccc---------------------
Confidence            333 33445666665544332222211110             00000       0000                     


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                             +                                                ...+.+..+|.|++||+.+++.+.
T Consensus       196 -------~------------------------------------------------~~~~~~~~d~~v~i~d~~~~~~~~  220 (340)
T d1tbga_         196 -------T------------------------------------------------RLFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             -------S------------------------------------------------SEEEEEETTTEEEEEETTTTEEEE
T ss_pred             -------c------------------------------------------------ceeEEeecCceEEEEECCCCcEEE
Confidence                   0                                                011234578999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .+.+|..+|.+|+|+|+|++||+++.||. |++||+...                 ..+..+....+...|.+++|+||+
T Consensus       221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD-----------------QELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT-----------------EEEEEECCTTCCSCEEEEEECSSS
T ss_pred             EEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeeccc-----------------ccccccccccccCceEEEEECCCC
Confidence            99999999999999999999999999776 999998541                 344444433344569999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      ++|++++.||+|+|||+........+.+|.
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            999999999999999998765555666674

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-19  Score=184.89  Aligned_cols=309  Identities=16%  Similarity=0.125  Sum_probs=194.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|.. .|+-       +++.|++|..+| ++|||+. .+++...+..|.++|.++.+.|+              
T Consensus        12 l~GH~~~V~s-~~~~-------~g~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~~~~--------------   68 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQF-------CGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRDN--------------   68 (342)
T ss_dssp             EECSTTSCEE-EEEE-------ETTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEETT--------------
T ss_pred             ECCcCCceEE-EEEE-------CCCEEEEEeCCCeEEEEECC-CCCEEEEEeCCCCCEEEEEeCCC--------------
Confidence            3578988854 3432       145788888776 9999995 57788888999999999998753              


Q ss_pred             cEEEEEEcCCCCCCCC---CCC----cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC
Q 003907          131 PFLLVVAGEDTNTLAP---GQN----RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP  202 (787)
Q Consensus       131 pLLavV~~d~~~~~~~---~~~----~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~  202 (787)
                       +|+..+.|+....-.   ...    ......+...............+.+|.+|+..+++....+... ..........
T Consensus        69 -~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
T d2ovrb2          69 -IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG  147 (342)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred             -ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc
Confidence             554433332110000   000    0000000000000000000124578999999999998888654 4665666666


Q ss_pred             C-eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907          203 R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       203 ~-~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      . .++.+.+..|++||....+.+.++..+...             ...+...+.+|+.++.+..+     ..|+....  
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~s~~~dg~i-----~~~d~~~~--  207 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG--  207 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC--
T ss_pred             ceeeeecCCCeEEEeecccceeeEEEcCcccc-------------cccccCCCCEEEEEeCCCeE-----EEeecccc--
Confidence            5 445577999999999999999998887765             23456677888888765211     11221111  


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                ..+                +++..+.      .......++      ...++.+..||.|+|||+...+.
T Consensus       208 ----------~~~----------------~~~~~~~------~~v~~~~~~------~~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         208 ----------NCI----------------HTLTGHQ------SLTSGMELK------DNILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             ----------CEE----------------EEECCCC------SCEEEEEEE------TTEEEEEETTSCEEEEETTTCCE
T ss_pred             ----------eee----------------eEecccc------cceeEEecC------CCEEEEEcCCCEEEEEecccccc
Confidence                      000                0000000      000011111      11245677899999999999988


Q ss_pred             EEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec---ccccccEE
Q 003907          362 ISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR---GITSATIQ  435 (787)
Q Consensus       362 v~~~~a---H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r---G~~~a~I~  435 (787)
                      ...+.+   |...+.+++|+  +++|++|+.|| .|+|||+..       |          ..++++..   +.+...|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg-~i~iwd~~t-------g----------~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEE
T ss_pred             cccccccceeeeceeecccC--CCeeEEEcCCC-EEEEEECCC-------C----------CEEEEEecccCCCCCCCEE
Confidence            887765   56677777775  57999999976 599999964       3          45666543   23445799


Q ss_pred             EEEEccCCCEEEEEeCCCe----EEEEeCCC
Q 003907          436 DICFSHYSQWIAIVSSKGT----CHVFVLSP  462 (787)
Q Consensus       436 slaFSpDg~~LAs~S~dgT----VhIwdl~~  462 (787)
                      +++|+||+++||+|+.|||    +++||++.
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999999999999997    99999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.3e-19  Score=189.20  Aligned_cols=245  Identities=11%  Similarity=0.108  Sum_probs=169.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL  133 (787)
                      +...|.-+.|..       +++.|++|..+| +++||... ++....+..|.++|..+.+.++.             ..+
T Consensus       120 ~~~~V~~l~~s~-------~~~~l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------~~~  178 (388)
T d1erja_         120 SDLYIRSVCFSP-------DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG-------------DKL  178 (388)
T ss_dssp             CCCBEEEEEECT-------TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred             CCCCEEEEEECC-------CCCcceecccccccccccccc-ccccccccccccccccccccccc-------------ccc
Confidence            445567677753       467888888887 89999954 56666777888999999988532             244


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-
Q 003907          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-  209 (787)
Q Consensus       134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~-  209 (787)
                      ++.+ +                                .+.|++||.++...+...........+.+.+   ++|+++. 
T Consensus       179 ~~~~-~--------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         179 VSGS-G--------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             EEEE-T--------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             cccc-c--------------------------------ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence            4322 1                                2589999999999999888888777777755   6777765 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~  289 (787)
                      ++.|++||..+++...++......... +     ......++++|       +.                          
T Consensus       226 d~~i~i~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~l~~s~-------~~--------------------------  266 (388)
T d1erja_         226 DRAVRVWDSETGFLVERLDSENESGTG-H-----KDSVYSVVFTR-------DG--------------------------  266 (388)
T ss_dssp             TSCEEEEETTTCCEEEEEC------CC-C-----SSCEEEEEECT-------TS--------------------------
T ss_pred             CCeEEEeecccCccceeeccccccccC-C-----CCCEEEEEECC-------CC--------------------------
Confidence            567999999999877776532110000 0     00011122221       00                          


Q ss_pred             CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC----------
Q 003907          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR----------  359 (787)
Q Consensus       290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~----------  359 (787)
                       .                                                 .++.+..||.|++||+.++          
T Consensus       267 -~-------------------------------------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         267 -Q-------------------------------------------------SVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             -S-------------------------------------------------EEEEEETTSEEEEEEC-------------
T ss_pred             -C-------------------------------------------------EEEEEECCCcEEEEeccCCcccccccccc
Confidence             0                                                 1123456788888887653          


Q ss_pred             --cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 003907          360 --AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI  437 (787)
Q Consensus       360 --~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sl  437 (787)
                        ........|...|.+++|+|+|++|++|+.||+ |+|||+..       +          .++.++. | +...|.++
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~l~-~-H~~~V~~~  356 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKS-------G----------NPLLMLQ-G-HRNSVISV  356 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTT-------C----------CEEEEEE-C-CSSCEEEE
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCC-------C----------cEEEEEe-C-CCCCEEEE
Confidence              244556789999999999999999999999775 99999864       3          4677775 4 34568888


Q ss_pred             E------EccCCCEEEEEeCCCeEEEEeCCC
Q 003907          438 C------FSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       438 a------FSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      +      |+||+++||+++.||+|+||++++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            7      567999999999999999999853

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=8.8e-20  Score=194.86  Aligned_cols=261  Identities=11%  Similarity=0.129  Sum_probs=171.3

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL  132 (787)
                      .|.|+.+.|+.       +++.|++|..+| ++|||++. ++  ....+..|+++|.+|++.|+.             .+
T Consensus         7 ~~pIt~~~~s~-------dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~-------------~~   65 (371)
T d1k8kc_           7 VEPISCHAWNK-------DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-------------NR   65 (371)
T ss_dssp             SSCCCEEEECT-------TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-------------TE
T ss_pred             CCCeEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCC-------------CE
Confidence            46689999974       477899998887 89999964 43  445678899999999999752             26


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecC--CeEEE
Q 003907          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP--RIVAV  207 (787)
Q Consensus       133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f---~s~V~sV~~s~--~~LaV  207 (787)
                      |++++.                                 +++|+|||+++++....+.+   ...|.++++++  +.|++
T Consensus        66 l~s~s~---------------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~  112 (371)
T d1k8kc_          66 IVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV  112 (371)
T ss_dssp             EEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEC---------------------------------CCeEEEEeeccccccccccccccccccccccccccccccee
Confidence            665331                                 25899999999887777654   35799999987  67777


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      +. ++.|++|+.........+.....+.         ......++++|  ++||.++.+..+     ..|+......   
T Consensus       113 ~s~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~~v~~v~~~p~~~~l~s~s~D~~v-----~v~~~~~~~~---  175 (371)
T d1k8kc_         113 GSGSRVISICYFEQENDWWVCKHIKKPI---------RSTVLSLDWHPNSVLLAAGSCDFKC-----RIFSAYIKEV---  175 (371)
T ss_dssp             EETTSSEEEEEEETTTTEEEEEEECTTC---------CSCEEEEEECTTSSEEEEEETTSCE-----EEEECCCTTT---
T ss_pred             ecccCcceeeeeeccccccccccccccc---------ccccccccccccccceeccccCcEE-----EEEeeccCcc---
Confidence            65 4579999887766554443321110         00123466666  566665543110     0111110000   


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                                                   ..     .+.  .      ..+                 ..+...++.+..
T Consensus       176 -----------------------------~~-----~~~--~------~~~-----------------~~~~~~~~~~~~  196 (371)
T d1k8kc_         176 -----------------------------EE-----RPA--P------TPW-----------------GSKMPFGELMFE  196 (371)
T ss_dssp             -----------------------------SC-----CCC--C------BTT-----------------BSCCCTTCEEEE
T ss_pred             -----------------------------cc-----ccc--c------ccc-----------------cccccceeeeee
Confidence                                         00     000  0      000                 000122456777


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (787)
Q Consensus       365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (787)
                      +.+|...|.+++|+|+|++||+++.|| .|++||+..       +          ..+..+..  +...|.+++|+||++
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~-------~----------~~~~~~~~--~~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVATLAS--ETLPLLAVTFITESS  256 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEEEEC--SSCCEEEEEEEETTE
T ss_pred             ccCccCcEEEEEeecccccccccccCC-cceEEeeec-------c----------cceeeeec--ccccceeeeecCCCC
Confidence            889999999999999999999999966 599999854       2          46666653  345799999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCcc
Q 003907          445 WIAIVSSKGTCHVFVLSPFGGDS  467 (787)
Q Consensus       445 ~LAs~S~dgTVhIwdl~~~gg~~  467 (787)
                      +||+|+ |+.+++|..+...+..
T Consensus       257 ~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         257 LVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             EEEEET-TSSCEEEEEETTTTEE
T ss_pred             EEEEEc-CCceEEEEeeCCCceE
Confidence            888765 6777888776544443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=8.2e-20  Score=186.65  Aligned_cols=243  Identities=11%  Similarity=0.053  Sum_probs=167.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEee-eeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ell-s~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||++. ++....+ ..|.++|.++++.|+.            
T Consensus         8 ~~GH~~~V~~l~~s~-------dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~~~g------------   67 (299)
T d1nr0a2           8 RYGHNKAITALSSSA-------DGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKG------------   67 (299)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTS------------
T ss_pred             cCCCCCCcEEEEECC-------CCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEEEEEeeccc------------
Confidence            578999999999973       367888888877 99999965 5555555 4678999999998641            


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE----EEEEeCCCcEEEEEecC--C
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY----EHVLRFRSSVCMVRCSP--R  203 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~----v~tL~f~s~V~sV~~s~--~  203 (787)
                       .++ +++.                                 +++|++|++...+.    .........+..+.+++  +
T Consensus        68 -~~~-~~~~---------------------------------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  112 (299)
T d1nr0a2          68 -DLF-TVSW---------------------------------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  112 (299)
T ss_dssp             -CEE-EEET---------------------------------TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             -eee-cccc---------------------------------eeeEEEeccCCccccccccccccccccccccccccccc
Confidence             244 3332                                 25899999765321    12234556788888876  6


Q ss_pred             eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907          204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (787)
Q Consensus       204 ~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s  283 (787)
                      +++++.++.+.+|+...   ...+.....              ...++++|       +.                    
T Consensus       113 ~~~~~~~~~i~~~~~~~---~~~~~~~~~--------------~~~~~~s~-------~~--------------------  148 (299)
T d1nr0a2         113 IAVAACYKHIAIYSHGK---LTEVPISYN--------------SSCVALSN-------DK--------------------  148 (299)
T ss_dssp             CEEEEESSEEEEEETTE---EEEEECSSC--------------EEEEEECT-------TS--------------------
T ss_pred             ccccccccccccccccc---ccccccccc--------------cccccccc-------cc--------------------
Confidence            78888888999998432   122211100              11222221       10                    


Q ss_pred             CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (787)
Q Consensus       284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~  363 (787)
                              .                                                .++.+..+|.|++||+.+++...
T Consensus       149 --------~------------------------------------------------~l~~g~~dg~i~~~d~~~~~~~~  172 (299)
T d1nr0a2         149 --------Q------------------------------------------------FVAVGGQDSKVHVYKLSGASVSE  172 (299)
T ss_dssp             --------C------------------------------------------------EEEEEETTSEEEEEEEETTEEEE
T ss_pred             --------c------------------------------------------------ccccccccccccccccccccccc
Confidence                    0                                                01123468899999998877544


Q ss_pred             -EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907          364 -QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (787)
Q Consensus       364 -~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (787)
                       ....|..+|.+++|+|+|++|++++.+|. |++||+.....              ......+ .+ +...|.+++|+||
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~--------------~~~~~~~-~~-h~~~v~~l~~s~~  235 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFE--------------LAHTNSW-TF-HTAKVACVSWSPD  235 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTE--------------ESCCCCC-CC-CSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccc--------------ccccccc-cc-ccccccccccccc
Confidence             34579999999999999999999999776 99999854100              0011111 12 3457999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907          443 SQWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       443 g~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      +++|++++.||+|+|||++.....
T Consensus       236 ~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         236 NVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccceEEEcCCCEEEEEECCCCCcc
Confidence            999999999999999999875443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.8e-19  Score=189.50  Aligned_cols=245  Identities=14%  Similarity=0.054  Sum_probs=167.6

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeE-------eeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE-------LVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~e-------lls~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      ...|..+.|.     +..++++|++|..+| ++|||+........       .+..+.++|..+.+.|+.          
T Consensus        63 ~~~v~~v~fs-----P~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~----------  127 (325)
T d1pgua1          63 SSVVTTVKFS-----PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG----------  127 (325)
T ss_dssp             TSCEEEEEEC-----SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS----------
T ss_pred             CCCEEEEEEe-----eCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC----------
Confidence            4679999996     233467899998877 99999965332211       233467899999998642          


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---C
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---R  203 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~  203 (787)
                       .  +|++++.+.                               .+.+++|+..+++++.+++.+ ..|.++.+++   .
T Consensus       128 -~--~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1         128 -R--RLCVVGEGR-------------------------------DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             -S--EEEEEECCS-------------------------------SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             -C--ccceeeccc-------------------------------cceEEEEeecccccceeeeecccccccccccccccc
Confidence             2  565544321                               257899999999999999855 5899999987   2


Q ss_pred             eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907          204 IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (787)
Q Consensus       204 ~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~  282 (787)
                      +++++ .++.|++||..+++...++.++..-.    +      ....++++|       +                    
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~----~------~v~~v~~~p-------d--------------------  216 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG----S------FVRDVEFSP-------D--------------------  216 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTT----C------CEEEEEECS-------T--------------------
T ss_pred             eEEEeecccccccccccccccceecccccCCC----C------ccEEeeecc-------c--------------------
Confidence            45544 46789999999887766665432100    0      011222221       1                    


Q ss_pred             CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (787)
Q Consensus       283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v  362 (787)
                             ++.+                                                ++.+..||.|++||+.+++.+
T Consensus       217 -------~~~~------------------------------------------------l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         217 -------SGEF------------------------------------------------VITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             -------TCCE------------------------------------------------EEEEETTCCEEEEETTTCCEE
T ss_pred             -------ccee------------------------------------------------ccccccccceeeeeecccccc
Confidence                   0111                                                123456899999999999999


Q ss_pred             EEeccCCCCeEEEEEC---CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE--EE
Q 003907          363 SQFKAHTSPISALCFD---PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ--DI  437 (787)
Q Consensus       363 ~~~~aH~~pIsaLaFS---pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~--sl  437 (787)
                      ..|.+|..++..+.|+   |+|++|+|++.|+ .|+|||+..       +          ..+..+..+.+...+.  ++
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~  303 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADA-TIRVWDVTT-------S----------KCVQKWTLDKQQLGNQQVGV  303 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTS-EEEEEETTT-------T----------EEEEEEECCTTCGGGCEEEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCC-eEEEEECCC-------C----------CEEEEEEecCCcccCeEEEE
Confidence            9999999988777776   7899999999966 599999964       2          4555554332222333  44


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeC
Q 003907          438 CFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       438 aFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                      .|.++ .+|+++|.||+|+||||
T Consensus       304 ~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         304 VATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEET-TEEEEEETTSCEEEEET
T ss_pred             EECCC-CEEEEEECCCEEEEEEC
Confidence            44444 47899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4e-18  Score=169.28  Aligned_cols=277  Identities=13%  Similarity=0.140  Sum_probs=175.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..++...|..+.||         ++.|++|..+| ++|||++ .+++...+..|.++|.+|.+.             ++ 
T Consensus        11 ~~~~~~~V~c~~~d---------~~~l~sgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~v~~~-------------~~-   66 (293)
T d1p22a2          11 RSETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------ER-   66 (293)
T ss_dssp             CCSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------SS-
T ss_pred             cCCCCCCEEEEEEc---------CCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEeeeecc-------------cc-
Confidence            45677788877775         45788888877 9999995 477888889999999988743             22 


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCeEEEE-
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVG-  208 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~~~LaV~-  208 (787)
                       +|++.+.                                 +++|++|+++++.......... ...........++++ 
T Consensus        67 -~l~s~s~---------------------------------D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (293)
T d1p22a2          67 -VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS  112 (293)
T ss_dssp             -EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE
T ss_pred             -eeecccc---------------------------------cccccccccccccccccccccccccccccccccceeecc
Confidence             5654221                                 2589999999998888776654 444444455556554 


Q ss_pred             eCCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          209 LATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~---t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      .+..+.+||..+........   .+...             ...+.+.+..+..++.+..+     ..|+..+.      
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~s~d~~i-----~~~d~~~~------  168 (293)
T d1p22a2         113 KDRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVSASGDRTI-----KVWNTSTC------  168 (293)
T ss_dssp             TTSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTEEEEEETTSEE-----EEEETTTC------
T ss_pred             cccceeEeeccccccccccccccccccc-------------cccceecccccccccCCCce-----eeecCCCC------
Confidence            45679999988766443332   34433             12344455455554443211     11221110      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                            ..+                +.+.....      ......+      ....++.+..||.|+|||+.+.+.+..+
T Consensus       169 ------~~~----------------~~~~~~~~------~v~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         169 ------EFV----------------RTLNGHKR------GIACLQY------RDRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             ------CEE----------------EEEECCSS------CEEEEEE------ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ------cEE----------------EEEccccc------ccccccC------CCCeEEEecCCCEEEEEecccceeeeee
Confidence                  000                01100000      0000000      0112446678999999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (787)
                      .+|...|.+  +++++.+|++++.||. |+|||+.......        .......+..+. + |...|++++|  |+++
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~--------~~~~~~~~~~~~-~-H~~~V~~v~~--d~~~  279 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPR--------APAGTLCLRTLV-E-HSGRVFRLQF--DEFQ  279 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTT--------SCTTTTEEEEEC-C-CSSCCCCEEE--CSSC
T ss_pred             cccceeeee--ccccceEEEEEcCCCE-EEEEECCCCcccc--------ccCCceeeEEec-C-CCCCEEEEEE--cCCE
Confidence            999999876  4567899999999776 9999974310000        000113455553 4 3457999998  5678


Q ss_pred             EEEEeCCCeEEEEe
Q 003907          446 IAIVSSKGTCHVFV  459 (787)
Q Consensus       446 LAs~S~dgTVhIwd  459 (787)
                      |+++|.||+|+|||
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            99999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.9e-18  Score=185.85  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             ccccCCCceEEEEECCCCcEEEEe------ccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCcc
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQF------KAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~------~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      ++++..||+|+|||+.+++.+..+      .+|..+|.+|+|+|||++||+||.|++  .|+|||+..       |    
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-------g----  266 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-------G----  266 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-------C----
T ss_pred             EEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-------c----
Confidence            346788999999999998877654      469999999999999999999999775  599999864       2    


Q ss_pred             ccCCcceEEEEEe------------cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCC
Q 003907          414 DWNSSHVHLYKLH------------RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG  476 (787)
Q Consensus       414 ~~~~s~~~l~~l~------------rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~  476 (787)
                            .++..+.            .| |...|++|+|+|||++|+++|.|++|+|||+.+......+.+|...+
T Consensus       267 ------~~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         267 ------ERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             ------CEEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             ------eeeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc
Confidence                  2333332            24 34569999999999999999999999999999876666788886443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.8e-18  Score=171.04  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=176.0

Q ss_pred             eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (787)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr  176 (787)
                      .+..|.+|.++|.+|++.|+             .++||.++.                                 +++|+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~-------------~~~l~s~s~---------------------------------Dg~i~   42 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPV-------------FSVMVSASE---------------------------------DATIK   42 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSS-------------SSEEEEEES---------------------------------SSCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCC-------------CCEEEEEeC---------------------------------CCeEE
Confidence            34568899999999999874             247765321                                 25899


Q ss_pred             EEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 003907          177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV  252 (787)
Q Consensus       177 lWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAl  252 (787)
                      |||+.+++.+.+++.+ ..|.++.+++  .+++.+. +..+.+|+....+....+..+...             ...+.+
T Consensus        43 iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  109 (317)
T d1vyhc1          43 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------VSSVSI  109 (317)
T ss_dssp             EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------EEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccccc-------------ceeeec
Confidence            9999999999999865 6899999988  5666655 456899998887765554444332             234555


Q ss_pred             cc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907          253 GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (787)
Q Consensus       253 sp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s  330 (787)
                      .|  +.|+.++.+..+     ..|+..++            ...                +++..+.      .......
T Consensus       110 ~~~~~~~~~~~~d~~~-----~~~~~~~~------------~~~----------------~~~~~~~------~~~~~~~  150 (317)
T d1vyhc1         110 MPNGDHIVSASRDKTI-----KMWEVQTG------------YCV----------------KTFTGHR------EWVRMVR  150 (317)
T ss_dssp             CSSSSEEEEEETTSEE-----EEEETTTC------------CEE----------------EEEECCS------SCEEEEE
T ss_pred             cCCCceEEeeccCcce-----eEeecccc------------eee----------------eEEccCC------Ccceeee
Confidence            55  566666544211     11221111            000                1111100      0011112


Q ss_pred             cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--------------------CEEEEEEcC
Q 003907          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--------------------TLLVTASVY  390 (787)
Q Consensus       331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG--------------------~lLATaS~d  390 (787)
                      ++++.    ..++.+..||.|++||+.+++.+..+.+|...|.+++|+|++                    .++++++.|
T Consensus       151 ~~~~~----~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         151 PNQDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             ECTTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             cccCC----CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            22222    234567789999999999999999999999999999998864                    478999996


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (787)
Q Consensus       391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~  470 (787)
                      | .|++||+..       +          ..+.++. + +...|.+++|+||+++|++++.||+|+|||+........+.
T Consensus       227 ~-~i~~~~~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         227 K-TIKMWDVST-------G----------MCLMTLV-G-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             S-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             C-EEEEEECCC-------C----------cEEEEEe-C-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence            6 599999854       3          4666665 3 34579999999999999999999999999998766666667


Q ss_pred             ccc
Q 003907          471 TLS  473 (787)
Q Consensus       471 ~H~  473 (787)
                      .|.
T Consensus       287 ~h~  289 (317)
T d1vyhc1         287 AHE  289 (317)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            774

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.1e-17  Score=168.68  Aligned_cols=288  Identities=14%  Similarity=0.086  Sum_probs=164.9

Q ss_pred             CCCCCCcE-EEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907           52 SEDLKDQV-TWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (787)
Q Consensus        52 ~~~~~~~v-~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s  129 (787)
                      ..+|++.| ..+.||         ++.|++|..+| ++|||+. .+++...+..|.++|.+|++.|+            .
T Consensus         8 L~GH~~~vitc~~~~---------~~~l~tgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~l~~s~~------------~   65 (355)
T d1nexb2           8 LRGHMTSVITCLQFE---------DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG------------G   65 (355)
T ss_dssp             EECCSSSCEEEEEEE---------TTEEEEEETTTEEEEEETT-TTEEEEEEECCSSCEEEEEEETT------------T
T ss_pred             ECCcCCCcEEEEEEC---------CCEEEEEeCCCeEEEEECC-CCcEEEEEECCCCCEEEEEEcCC------------C
Confidence            45788775 556665         35788888877 9999996 47777888999999999999853            1


Q ss_pred             CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecC--Ce
Q 003907          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RI  204 (787)
Q Consensus       130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~  204 (787)
                        +|+..+.                                 +++|++|++...+.........   .+..+.+.+  +.
T Consensus        66 --~l~s~s~---------------------------------D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          66 --ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             --EEEEEET---------------------------------TCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             --EEEEEec---------------------------------ccccccccccccccccccccccccccccccccccccce
Confidence              5544221                                 3689999999999888776543   223333443  45


Q ss_pred             EEEE-eCCeEEEEECCCCceeEEEEecC-CcccC--CCCcc-cc---cc-ccceeEEc--cceEEEecCCceecCcceec
Q 003907          205 VAVG-LATQIYCFDALTLENKFSVLTYP-VPQLA--GQGAV-GI---NV-GYGPMAVG--PRWLAYASNTLLLSNSGRLS  273 (787)
Q Consensus       205 LaV~-~~~~I~iwD~~T~e~l~tl~t~p-~p~~~--~~~~~-~~---~~-~~~~lAls--pr~LAyas~~~~l~~~g~~s  273 (787)
                      ++++ .++.|++||+.+.+......... .+...  ..... ..   .. .....+..  .++++.+..+..+     ..
T Consensus       111 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i-----~~  185 (355)
T d1nexb2         111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL-----IV  185 (355)
T ss_dssp             EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE-----EE
T ss_pred             eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee-----ee
Confidence            6655 45689999998876544332111 10000  00000 00   00 00001111  1344443322100     01


Q ss_pred             cccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEE
Q 003907          274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV  353 (787)
Q Consensus       274 ~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~I  353 (787)
                      |+..+.            ..+                +.+....      .......+++.    ...+..+..||.|++
T Consensus       186 ~d~~~~------------~~~----------------~~~~~~~------~~~~~~~~~~~----~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         186 WDVAQM------------KCL----------------YILSGHT------DRIYSTIYDHE----RKRCISASMDTTIRI  227 (355)
T ss_dssp             EETTTT------------EEE----------------EEECCCS------SCEEEEEEETT----TTEEEEEETTSCEEE
T ss_pred             eecccc------------cce----------------eeeeccc------ccccccccccc----ceeeecccccceEEe
Confidence            111000            000                0000000      00001111111    112345678999999


Q ss_pred             EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 003907          354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT  433 (787)
Q Consensus       354 wDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~  433 (787)
                      ||+.++..+..+.+|..+|.+++|++  ++|++++.|| .|++||+..       +          .+....+.   ...
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg-~i~iwd~~~-------~----------~~~~~~~~---~~~  284 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG-SIRGWDAND-------Y----------SRKFSYHH---TNL  284 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS-EEEEEETTT-------C----------CEEEEEEC---TTC
T ss_pred             eecccccccccccccccccccccccc--ceeeeeeccc-ccccccccc-------c----------ceeccccc---CCc
Confidence            99999999999999999999999974  7999999977 499999854       2          23334332   222


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       434 I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ....+|++++++|++++ |++|+|||++..
T Consensus       285 ~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         285 SAITTFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             CCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence            23346788888877765 889999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2.9e-17  Score=167.75  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=163.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce---eEeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~---~ells~~dg~V~~v~~lP~P~~~~~~d~F~  127 (787)
                      .+.|...|..+.|..       .++.|++|+.++ +++|+.......   ...+..|.+........+.           
T Consensus        93 ~~~~~~~v~~v~~~~-------~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  154 (340)
T d1tbga_          93 IPLRSSWVMTCAYAP-------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-----------  154 (340)
T ss_dssp             EECSCSCEEEEEECT-------TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-----------
T ss_pred             EecccccEEeeEeec-------cceeeeeecccceeecccccccccccccceecccccccccccccccc-----------
Confidence            345677788888863       356788777766 899998654322   2223334444444333211           


Q ss_pred             ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--Ce
Q 003907          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RI  204 (787)
Q Consensus       128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~  204 (787)
                         ..+....                                 .......|+..+......... ...+..+.+.+  .+
T Consensus       155 ---~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         155 ---NQIVTSS---------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             ---TEEEEEE---------------------------------TTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ---ccccccc---------------------------------ccccccccccccccccccccccceeEeeeccccccce
Confidence               1232211                                 124778888887776665554 45777777765  56


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      ++++. +..|++||+.+++.+.++..|..+             ...++++|  ++|                        
T Consensus       199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~-------------i~~v~~~p~~~~l------------------------  241 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFPNGNAF------------------------  241 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEE------------------------
T ss_pred             eEEeecCceEEEEECCCCcEEEEEeCCCCC-------------eEEEEECCCCCEE------------------------
Confidence            66654 568999999999988888765542             22344432  111                        


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                                                                                   +.+..||.|++||+.....
T Consensus       242 -------------------------------------------------------------~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         242 -------------------------------------------------------------ATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             -------------------------------------------------------------EEEETTSCEEEEETTTTEE
T ss_pred             -------------------------------------------------------------EEEeCCCeEEEEeeccccc
Confidence                                                                         1234688999999999887


Q ss_pred             EEEe--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907          362 ISQF--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (787)
Q Consensus       362 v~~~--~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (787)
                      +..+  ..|..+|.+++|+|+|++|++++.||. |+|||+..       +          ..+..+. | |...|.+|+|
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-H~~~V~~l~~  320 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALK-------A----------DRAGVLA-G-HDNRVSCLGV  320 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEE
Confidence            7765  467788999999999999999999776 99999854       2          4666664 4 3457999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEe
Q 003907          440 SHYSQWIAIVSSKGTCHVFV  459 (787)
Q Consensus       440 SpDg~~LAs~S~dgTVhIwd  459 (787)
                      +||+++|+++|.||+|+|||
T Consensus       321 s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=1e-17  Score=170.91  Aligned_cols=236  Identities=11%  Similarity=0.120  Sum_probs=157.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      +.|++.|..+.|..       +++++++|.++++++|+......  .......+...+..+.+.|+.             
T Consensus        52 ~~h~~~v~~v~~~~-------~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-------------  111 (299)
T d1nr0a2          52 DVHATMITGIKTTS-------KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-------------  111 (299)
T ss_dssp             CSCSSCEEEEEECT-------TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-------------
T ss_pred             CCCCCcEEEEEeec-------cceeecccceeeEEEeccCCcccccccccccccccccccccccccc-------------
Confidence            45788899999863       35788889888999999854321  223344566778888887631             


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~  208 (787)
                      .+++. ..                                 .+.+++|+...   ...+.....+..+++++  ++|+++
T Consensus       112 ~~~~~-~~---------------------------------~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         112 DIAVA-AC---------------------------------YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SCEEE-EE---------------------------------SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccc-cc---------------------------------ccccccccccc---ccccccccccccccccccccccccc
Confidence            14432 22                                 14799999543   33445566777888877  678876


Q ss_pred             e-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907          209 L-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~  284 (787)
                      . ++.|++||+.+.+...... .|+.+             ...++++|  ++|                           
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l---------------------------  194 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAE-------------ITSVAFSNNGAFL---------------------------  194 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSC-------------EEEEEECTTSSEE---------------------------
T ss_pred             ccccccccccccccccccccccccccc-------------ccccccccccccc---------------------------
Confidence            5 5679999998776433222 23321             12233322  111                           


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE-
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-  363 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~-  363 (787)
                                                                                +.+..+|.|++||+.++..+. 
T Consensus       195 ----------------------------------------------------------~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         195 ----------------------------------------------------------VATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             ----------------------------------------------------------EEEETTSCEEEEEGGGTTEESC
T ss_pred             ----------------------------------------------------------cccccccccccccccccccccc
Confidence                                                                      123457889999998776543 


Q ss_pred             --EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907          364 --QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (787)
Q Consensus       364 --~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (787)
                        .+.+|..+|.+++|+|+|++||+++.||. |+|||+....     .          ..+ ....+++...|.+++ ++
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~-----~----------~~~-~~~~~~~~~~v~~~~-~~  278 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPS-----D----------HPI-IIKGAHAMSSVNSVI-WL  278 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTT-----S----------CCE-EETTSSTTSCEEEEE-EE
T ss_pred             cccccccccccccccccccccceEEEcCCCE-EEEEECCCCC-----c----------ceE-EEecCCCCCcEEEEE-EC
Confidence              45679999999999999999999999775 9999986410     0          122 222233334577665 46


Q ss_pred             CCCEEEEEeCCCeEEEEeCC
Q 003907          442 YSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       442 Dg~~LAs~S~dgTVhIwdl~  461 (787)
                      |+++|++++.|++|+||||.
T Consensus       279 ~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         279 NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTEEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEeCCCEEEEEecc
Confidence            67899999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.4e-17  Score=175.75  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=132.7

Q ss_pred             CEEEEEECCCCe--EEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccc
Q 003907          173 TAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGIN  244 (787)
Q Consensus       173 ~tVrlWdlktg~--~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t--~p~p~~~~~~~~~~~  244 (787)
                      +.|+|||+.+++  .+++|+. .++|.+|+|++  ++|+++. +..|++||+.+++....+..  +..+           
T Consensus        29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~-----------   97 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-----------   97 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC-----------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc-----------
Confidence            589999998886  5667764 46999999986  6777765 56899999987765444432  1110           


Q ss_pred             cccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       245 ~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                        ...++++|  ++|+                                                                
T Consensus        98 --v~~i~~~p~~~~l~----------------------------------------------------------------  111 (371)
T d1k8kc_          98 --ARCVRWAPNEKKFA----------------------------------------------------------------  111 (371)
T ss_dssp             --EEEEEECTTSSEEE----------------------------------------------------------------
T ss_pred             --ccccccccccccce----------------------------------------------------------------
Confidence              12233322  1111                                                                


Q ss_pred             CCCCCCcccCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd  398 (787)
                                           .+..+|+|++|++....    .......|...|.+++|+|+|++||+|+.||+ |+|||
T Consensus       112 ---------------------~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~-v~v~~  169 (371)
T d1k8kc_         112 ---------------------VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFS  169 (371)
T ss_dssp             ---------------------EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEE
T ss_pred             ---------------------eecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE-EEEEe
Confidence                                 23457788888876543    23445689999999999999999999999776 99999


Q ss_pred             CCCCcccCCCCCCcccc-CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907          399 IMPSCMRSGSGNHKYDW-NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (787)
Q Consensus       399 i~~~~~~~~~g~~~~~~-~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~  473 (787)
                      +..............+. ......+.+.. + +...|.+++|+|||++|++++.|++|++||+........+..|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         170 AYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             eccCccccccccccccccccceeeeeecc-C-ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            85421100000000000 01112344332 2 34569999999999999999999999999998765555566664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.2e-17  Score=173.22  Aligned_cols=244  Identities=14%  Similarity=0.096  Sum_probs=158.6

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcE--EEEEccCCC-ceeEeeeec-cCcEEEEEEecCCCCCCCCCCccccC
Q 003907           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF--QVLDVEDAS-NFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~--qVWdv~~~~-~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      .+.+++.+.|+.       .+..|+.+..+..  +.||..... .....+..| ..+|.+|++.|..           +.
T Consensus        16 ~~~~~t~l~~~~-------~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~-----------~g   77 (325)
T d1pgua1          16 QRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK-----------GS   77 (325)
T ss_dssp             CTTCCCCCEEET-------TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST-----------TC
T ss_pred             CCCCeEEEEECC-------CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC-----------CC
Confidence            344566677774       2457787877764  555543221 112234444 4689999999742           11


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--------e-CCCcEEEEEec
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--------R-FRSSVCMVRCS  201 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL--------~-f~s~V~sV~~s  201 (787)
                      .+||.  ++.                               +++|+|||+..++....+        . +.++|.+|+++
T Consensus        78 ~~las--gs~-------------------------------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s  124 (325)
T d1pgua1          78 QYLCS--GDE-------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD  124 (325)
T ss_dssp             CEEEE--EET-------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC
T ss_pred             CEEEE--EeC-------------------------------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC
Confidence            25543  321                               368999998765432222        1 34689999998


Q ss_pred             C--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceecccc
Q 003907          202 P--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN  276 (787)
Q Consensus       202 ~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~  276 (787)
                      +  +.|+++.   +..+++|+..+++.+.++..|..+             ...++++|       ..             
T Consensus       125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-------------  171 (325)
T d1pgua1         125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR-------------INACHLKQ-------SR-------------  171 (325)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC-------------EEEEEECS-------SS-------------
T ss_pred             CCCCccceeeccccceEEEEeecccccceeeeecccc-------------cccccccc-------cc-------------
Confidence            7  5666543   345999999999888877665542             22334322       10             


Q ss_pred             CCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC
Q 003907          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (787)
Q Consensus       277 lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl  356 (787)
                                    ..+                                                ...+..||.|++||.
T Consensus       172 --------------~~~------------------------------------------------~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         172 --------------PMR------------------------------------------------SMTVGDDGSVVFYQG  189 (325)
T ss_dssp             --------------SCE------------------------------------------------EEEEETTTEEEEEET
T ss_pred             --------------cce------------------------------------------------EEEeecccccccccc
Confidence                          000                                                012346889999999


Q ss_pred             CCCcEEEEe---ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907          357 VTRAIISQF---KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (787)
Q Consensus       357 ~s~~~v~~~---~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a  432 (787)
                      ...+....+   .+|...|.+++|+|+ +.+||+++.||. |++||+..       +          ..+..+. ++ ..
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~-------~----------~~~~~l~-~~-~~  249 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKYIE-DD-QE  249 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEECC-BT-TB
T ss_pred             cccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecc-------c----------ccccccc-cc-cc
Confidence            887765554   467889999999996 789999999776 99999854       2          3556664 32 22


Q ss_pred             cEEEEEEc---cCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          433 TIQDICFS---HYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       433 ~I~slaFS---pDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      .|.++.|+   |||++|++++.|++|+|||+....
T Consensus       250 ~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            34444444   689999999999999999998643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=1.1e-16  Score=165.58  Aligned_cols=190  Identities=12%  Similarity=0.032  Sum_probs=140.8

Q ss_pred             CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (787)
Q Consensus        74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~  153 (787)
                      +++.++.+.++.+.|||++ .+.+.++  .|.+.|..+.++|+.           +  +|++++.++             
T Consensus        14 dG~~~a~~~~g~v~v~d~~-~~~~~~~--~~~~~v~~~~~spDg-----------~--~l~~~~~~~-------------   64 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVS-GTYVLKV--PEPLRIRYVRRGGDT-----------K--VAFIHGTRE-------------   64 (360)
T ss_dssp             GGGCEEEEETTEEEEECTT-SSBEEEC--SCCSCEEEEEECSSS-----------E--EEEEEEETT-------------
T ss_pred             CCCEEEEEECCeEEEEECC-CCcEEEc--cCCCCEEEEEECCCC-----------C--EEEEEEcCC-------------
Confidence            5788899988889999995 4666665  578899999999863           2  566544322             


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 003907          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY  230 (787)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~  230 (787)
                                        ...|++||+++++..........|.+++|++  +.|+++. +..+++||+.+++....+..+
T Consensus        65 ------------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          65 ------------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             ------------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             ------------------CCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence                              1479999999998877667778999999998  5777655 557999999999877776654


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (787)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G  308 (787)
                      ...             ...++++|  ++||++.....                                           
T Consensus       127 ~~~-------------~~~~~~spdg~~la~~~~~~~-------------------------------------------  150 (360)
T d1k32a3         127 EAM-------------ITDFTISDNSRFIAYGFPLKH-------------------------------------------  150 (360)
T ss_dssp             SSC-------------CCCEEECTTSCEEEEEEEECS-------------------------------------------
T ss_pred             ccc-------------ccchhhccceeeeeeeccccc-------------------------------------------
Confidence            432             24577887  78887643100                                           


Q ss_pred             cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS  388 (787)
Q Consensus       309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS  388 (787)
                                                      ....+..++.+++||+.+++. ..+..|...+..++|+|||++|++++
T Consensus       151 --------------------------------~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         151 --------------------------------GETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             --------------------------------STTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             --------------------------------cceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEe
Confidence                                            000123467899999998765 44556778899999999999999999


Q ss_pred             cCCCEEEEEeCC
Q 003907          389 VYGNNINIFRIM  400 (787)
Q Consensus       389 ~dG~~IrVWdi~  400 (787)
                      .++. +++||..
T Consensus       198 ~~~~-~~~~d~~  208 (360)
T d1k32a3         198 YRSL-DPSPDRV  208 (360)
T ss_dssp             SCCC-CCEECSS
T ss_pred             CCCc-eEccccc
Confidence            8665 7888853

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.6e-17  Score=166.32  Aligned_cols=291  Identities=11%  Similarity=0.029  Sum_probs=171.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccc
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK  128 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~  128 (787)
                      .++|+|.|.-+.|..       +++.|++|+.+| ++|||++......++..  .|.++|.++++.|+            
T Consensus         7 ~~~h~d~I~~l~fsp-------~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~------------   67 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------   67 (342)
T ss_dssp             SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred             CCCCCCCEEEEEEeC-------CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC------------
Confidence            567999999999974       356888888776 99999976555444433  58899999999873            


Q ss_pred             cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--c--EEEEEecCCe
Q 003907          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--S--VCMVRCSPRI  204 (787)
Q Consensus       129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s--~--V~sV~~s~~~  204 (787)
                      ...+|++ ++.                                +++|++|++..+..........  .  ......+...
T Consensus        68 ~~~~l~s-g~~--------------------------------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (342)
T d1yfqa_          68 TDLQIYV-GTV--------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK  114 (342)
T ss_dssp             SSEEEEE-EET--------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTE
T ss_pred             CCCEEEE-ccc--------------------------------ccceeeeeccccccccccccccccccccccccccccc
Confidence            1124443 221                                2589999999888777765443  1  2223334455


Q ss_pred             EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc--cceEEEecCCceecCcceeccccCCCCC
Q 003907          205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (787)
Q Consensus       205 LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls--pr~LAyas~~~~l~~~g~~s~q~lt~~~  281 (787)
                      ++. +.+..+++||+.+................       ......+.+.  ...++.++.+..+     ..|+......
T Consensus       115 ~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~i-----~~~~~~~~~~  182 (342)
T d1yfqa_         115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-------KVKNKIFTMDTNSSRLIVGMNNSQV-----QWFRLPLCED  182 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-------SSCCCEEEEEECSSEEEEEESTTEE-----EEEESSCCTT
T ss_pred             ccccccccccceeeccccccceeeecccccccc-------cceeeeeeeeccCCceeeecCCCcE-----EEEecccCcc
Confidence            555 55678999998766544444321110000       0001122332  2455555443211     1122111100


Q ss_pred             cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (787)
Q Consensus       282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~  361 (787)
                      ..        .....                 ..      ...........+   ........+..+|.+.+|++.....
T Consensus       183 ~~--------~~~~~-----------------~~------~~~~~~~~~~~~---~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         183 DN--------GTIEE-----------------SG------LKYQIRDVALLP---KEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CC--------CEEEE-----------------CS------CSSCEEEEEECS---GGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             cc--------eeeee-----------------cc------cccceeeeEeec---CCCCEEEeecCCCeEEEEEecCCcc
Confidence            00        00000                 00      000000000000   0111233556789999999864321


Q ss_pred             ---------E------EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          362 ---------I------SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       362 ---------v------~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                               .      .....|..+|++|+|+|+|.+||||+.||. |+|||+..       +          .++.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~-------~----------~~l~~~~  290 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKIKNFA  290 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCC-------C----------cEEEEec
Confidence                     1      112357779999999999999999999886 99999864       2          5666665


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ++.   .+..++|+|||++||+++.|+++++|...
T Consensus       291 ~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         291 KFN---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCS---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCC---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            432   35568899999999999999999888653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.2e-16  Score=162.15  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=76.9

Q ss_pred             ccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCC----------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907          344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPS----------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpd----------G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~  412 (787)
                      .+..+|.|++||+.+++.+. .+.+|..+|.+++|+|+          +.+|||||.|++ |+|||+...      +   
T Consensus       179 ~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~------~---  248 (287)
T d1pgua2         179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRP------M---  248 (287)
T ss_dssp             EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCT------T---
T ss_pred             cccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCC------C---
Confidence            34568999999999988665 46799999999999875          468999999776 999998531      1   


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (787)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl  460 (787)
                             ..+ ....| |...|.+++|+||+ .|++++.|++|+||++
T Consensus       249 -------~~~-~~~~~-h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 -------KII-KALNA-HKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------CCE-EETTS-STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             -------eEE-EEeCC-CCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                   233 33345 34579999999997 5888999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.3e-16  Score=158.78  Aligned_cols=233  Identities=11%  Similarity=0.088  Sum_probs=156.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (787)
Q Consensus        52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr  130 (787)
                      ..+|++.|..+.|+.           |++|..+| +++||+..      ....|.+.|..+.+.+.             .
T Consensus         9 l~gH~~~I~~l~~s~-----------l~sgs~Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~-------------~   58 (287)
T d1pgua2           9 ISGHNKGITALTVNP-----------LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA-------------Q   58 (287)
T ss_dssp             ECCCSSCEEEEETTT-----------TEEEETTSCEEETTTTE------EECCCCSCEEEEECCST-------------T
T ss_pred             ECCCCCceEEEEECc-----------EEEEeCCCeEEEEECCC------CCCCCCCCEEEEEecCC-------------C
Confidence            467999999988852           67777776 89999743      23567788988876532             1


Q ss_pred             cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~  208 (787)
                       .++.++.                                 +++|++|++.+      .++.+.+..+.+++  .+++++
T Consensus        59 -~~~s~s~---------------------------------D~~v~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~   98 (287)
T d1pgua2          59 -EYSSISW---------------------------------DDTLKVNGITK------HEFGSQPKVASANNDGFTAVLT   98 (287)
T ss_dssp             -CCEEEET---------------------------------TTEEEETTEEE------EECSSCEEEEEECSSSEEEEEE
T ss_pred             -eEEEEee---------------------------------ccccccccccc------cccccceeeeeeccCCceEEEe
Confidence             2333221                                 25899998743      34566666677766  455567


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (787)
Q Consensus       209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~  286 (787)
                      .++.+.+|+..+++....+.....                ..++.+  ..++.+                          
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~--------------------------  136 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSVRLNSP----------------GSAVSLSQNYVAVG--------------------------  136 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSC----------------EEEEEECSSEEEEE--------------------------
T ss_pred             ecccceeeeccceeeeeeccccce----------------eeeeeccCcceeee--------------------------
Confidence            777899999988887666543211                112211  111111                          


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~  366 (787)
                                                                                +..++.|++|++...+....+.
T Consensus       137 ----------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2         137 ----------------------------------------------------------LEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             ----------------------------------------------------------ETTTSCEEEEETTEEEEEEECS
T ss_pred             ----------------------------------------------------------ccccceeeeeeccccceeeeee
Confidence                                                                      1234578999998766666554


Q ss_pred             -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---
Q 003907          367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---  442 (787)
Q Consensus       367 -aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---  442 (787)
                       .|..+|++|+|+|+|++||+++.+|. |++||+..       +          ........+ +...|.+++|+|+   
T Consensus       159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~-------~----------~~~~~~~~~-h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         159 TPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R----------EVKTSRWAF-RTSKINAISWKPAEKG  219 (287)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEECCSCC-CSSCEEEEEECCCC--
T ss_pred             eccCCceeEEEeccCcccccccccccc-ccceeecc-------c----------ccccccccc-cccccceeeecccccc
Confidence             58889999999999999999999776 99999854       2          222222222 4467999999875   


Q ss_pred             -------CCEEEEEeCCCeEEEEeCCCCCCcc-cccccc
Q 003907          443 -------SQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLS  473 (787)
Q Consensus       443 -------g~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~  473 (787)
                             +++||+++.|++|+||++...+... .+.+|.
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC
Confidence                   5689999999999999997644332 234553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.5e-16  Score=159.72  Aligned_cols=247  Identities=14%  Similarity=0.104  Sum_probs=136.9

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      ++|+|||+++++++++++.+ ..|.++++++++|+++. ++.+++|+................             ....
T Consensus        37 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  103 (342)
T d2ovrb2          37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST-------------VRCM  103 (342)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceeccccccee-------------Eeee
Confidence            68999999999999999865 59999999999888765 567999998887655444332221             1111


Q ss_pred             EEccceEEEecCCce--ecC--cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          251 AVGPRWLAYASNTLL--LSN--SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       251 Alspr~LAyas~~~~--l~~--~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ...+..++.+..+..  +..  .+.................+. ....+....|....+..-.    ...+.........
T Consensus       104 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~d~~----~~~~~~~~~~~~~  178 (342)
T d2ovrb2         104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTN  178 (342)
T ss_dssp             EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGG----GTEEEEEECCCSS
T ss_pred             ecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEEEeecc----cceeeEEEcCccc
Confidence            222233333322211  100  000000000000000000000 0011111111110000000    0000000000000


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~  406 (787)
                      ....    ....+..++++..||.|++||+..++.+..+.+|...|.+++|++  ++|++++.||. |+|||+...    
T Consensus       179 ~~~~----~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~-i~iwd~~~~----  247 (342)
T d2ovrb2         179 RVYS----LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST-VKIWDIKTG----  247 (342)
T ss_dssp             CEEE----EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC-EEEEETTTC----
T ss_pred             cccc----ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE-EEEEecccc----
Confidence            0001    111122355778999999999999999999999999999988865  69999999776 999998541    


Q ss_pred             CCCCCccccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          407 GSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       407 ~~g~~~~~~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                                   .....+.... +...+.+++|+  +++|++++.||+|+|||++..
T Consensus       248 -------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         248 -------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             -------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             -------------cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC
Confidence                         2344443221 12346666665  569999999999999999764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.7e-16  Score=161.66  Aligned_cols=233  Identities=10%  Similarity=0.072  Sum_probs=157.4

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (787)
Q Consensus        54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~-~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp  131 (787)
                      +|++.|..+.|..       +++.|++|..+| ++|||+... ..+...+..|...|..+.+.|+.             .
T Consensus        95 ~h~~~I~~v~~s~-------dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~  154 (337)
T d1gxra_          95 NRDNYIRSCKLLP-------DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-------------K  154 (337)
T ss_dssp             CTTSBEEEEEECT-------TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-------------S
T ss_pred             CCCCcEEEEEEcC-------CCCEEEEeeccccccccccccccccccccccccccccccccccccc-------------c
Confidence            4666788888853       356788887776 999998643 23444566777889999988642             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEE
Q 003907          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG  208 (787)
Q Consensus       132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~  208 (787)
                      +|++.+.                                 +..|++||+.++++...... ...|.++++++  +.++++
T Consensus       155 ~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~  201 (337)
T d1gxra_         155 VCFSCCS---------------------------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccc---------------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence            5554221                                 25799999999999888875 46899999977  566665


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (787)
Q Consensus       209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s  285 (787)
                      . ++.|++||+.+++.+..+. ++.+             ...++++|  ++|+.++.+..+     ..|+.-++      
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~~-~~~~-------------i~~l~~~~~~~~l~~~~~d~~i-----~i~d~~~~------  256 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQHD-FTSQ-------------IFSLGYCPTGEWLAVGMESSNV-----EVLHVNKP------  256 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTSS------
T ss_pred             cccccccccccccceeecccc-cccc-------------eEEEEEcccccccceecccccc-----cccccccc------
Confidence            5 5689999999998776654 2221             34577777  678877654211     11221110      


Q ss_pred             cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (787)
Q Consensus       286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~  365 (787)
                            ...                 ...      ...+....+.++++.+    .+++++.||.|+|||+.+++.+.++
T Consensus       257 ------~~~-----------------~~~------~~~~~i~~v~~s~~g~----~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         257 ------DKY-----------------QLH------LHESCVLSLKFAYCGK----WFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ------CEE-----------------EEC------CCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------ccc-----------------ccc------ccccccceEEECCCCC----EEEEEeCCCeEEEEECCCCCEEEEc
Confidence                  000                 000      0001111222333332    3456778999999999999988776


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (787)
Q Consensus       366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi  399 (787)
                      . |..+|.+++|+|+|++||||+.||+ |+|||+
T Consensus       304 ~-~~~~v~~~~~s~d~~~l~t~s~D~~-I~vWdl  335 (337)
T d1gxra_         304 K-ESSSVLSCDISVDDKYIVTGSGDKK-ATVYEV  335 (337)
T ss_dssp             E-CSSCEEEEEECTTSCEEEEEETTSC-EEEEEE
T ss_pred             c-CCCCEEEEEEeCCCCEEEEEeCCCe-EEEEEE
Confidence            4 7799999999999999999999776 999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.4e-15  Score=149.93  Aligned_cols=236  Identities=14%  Similarity=0.106  Sum_probs=144.1

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (787)
                      ++|+|||+++++++++++.+ +.|.+|++++ ++|+++ .++.|++|+..+.+............           ....
T Consensus        33 g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-----------~~~~  101 (355)
T d1nexb2          33 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-----------RCLD  101 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCE-----------EEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccc-----------cccc
Confidence            69999999999999999865 6999999987 566665 46689999999887666554322210           0112


Q ss_pred             eEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          250 MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       250 lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                      +...+  ++++.++.+..+     ..|+.-+................ ........    ........+        ...
T Consensus       102 ~~~~~~~~~~~~~~~d~~i-----~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~--------~~~  163 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTL-----HVWKLPKESSVPDHGEEHDYPLV-FHTPEENP----YFVGVLRGH--------MAS  163 (355)
T ss_dssp             EEEETTEEEEEEEETTSEE-----EEEECCC-----------CCCEE-ESCTTTCT----TEEEEEECC--------SSC
T ss_pred             cccccccceeeeecCCCcE-----EEEEccCCceeccccccceeccc-eecccccc----ceeeeeeec--------ccc
Confidence            23333  667776654211     11222111000000000000000 00000000    000000000        000


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~  407 (787)
                      ...    ....+.....+..++.|++||+.+++.+..+.+|...+.++.|+|++.++++++.|+. |+|||+..      
T Consensus       164 v~~----~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~------  232 (355)
T d1nexb2         164 VRT----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN------  232 (355)
T ss_dssp             EEE----EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT------
T ss_pred             ccc----cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeeccc------
Confidence            000    0011112345678899999999999999999999999999999999999999999776 99999854      


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                       +          ..+..+. + +...|.+++|++  ++|++++.||+|++||++..
T Consensus       233 -~----------~~~~~~~-~-h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         233 -G----------ELMYTLQ-G-HTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             -C----------CEEEEEC-C-CSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             -c----------ccccccc-c-cccccccccccc--ceeeeeeccccccccccccc
Confidence             2          3555554 4 345689999874  69999999999999999764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.3e-15  Score=160.21  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             CceEEEEECCCCcEEEEec-------------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907          348 AGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~-------------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      .+.|+|||+.+++.+..+.             +|...|++|+|+|||++|||+|.|+ .|+|||+.+       |     
T Consensus       255 ~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~-~v~vWd~~~-------g-----  321 (393)
T d1sq9a_         255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-KLRFWDVKT-------K-----  321 (393)
T ss_dssp             EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-EEEEEETTT-------T-----
T ss_pred             cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC-EEEEEECCC-------C-----
Confidence            3568899998887777664             7999999999999999999999966 499999965       4     


Q ss_pred             cCCcceEEEEEecccccccE----EEEEEccCCCEEEEEe
Q 003907          415 WNSSHVHLYKLHRGITSATI----QDICFSHYSQWIAIVS  450 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I----~slaFSpDg~~LAs~S  450 (787)
                           .++++|+ |+. ..|    ..++|+||+..+++++
T Consensus       322 -----~~~~~l~-gH~-~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         322 -----ERITTLN-MHC-DDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             -----EEEEEEE-CCG-GGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             -----CEEEEEC-CcC-CcccCCccEEEECCCCCEEEEcc
Confidence                 5777775 433 233    3577888887776443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=9.7e-14  Score=141.27  Aligned_cols=280  Identities=11%  Similarity=0.075  Sum_probs=168.9

Q ss_pred             eEEEEEec-CcEEEEEccCCCceeEeeeecc--CcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           76 QVLLLGYQ-NGFQVLDVEDASNFNELVSKRD--GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        76 ~vL~lG~~-~G~qVWdv~~~~~~~ells~~d--g~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      ..|+++.. +.++|||++. +++...+..++  ..+..+.+.|+.           +  +|+++...             
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg-----------~--~l~v~~~~-------------   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGG-----------R--IAYATVNK-------------   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTS-----------S--EEEEEETT-------------
T ss_pred             eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCC-----------C--EEEEEECC-------------
Confidence            35666665 5699999964 66666665443  446788888752           2  45443321             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-------------CC
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT  211 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~-------------~~  211 (787)
                                         .++|.+||+++++.+.++..+.      .+..+++++  +.|+++.             +.
T Consensus        55 -------------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             -------------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence                               2589999999999999997653      234677776  5565543             34


Q ss_pred             eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC--cceecccc-CCCCCcCCCc
Q 003907          212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN--SGRLSPQN-LTPSGVSPST  286 (787)
Q Consensus       212 ~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~--~g~~s~q~-lt~~~~s~s~  286 (787)
                      .+.+||..+++.+.++.....+              ..++++|  ++|+.++.+..+++  .+...... .........+
T Consensus       116 ~~~~~d~~~~~~~~~~~~~~~~--------------~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  181 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEAPRQI--------------TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA  181 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSC--------------CCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred             ceeeccccCCeEEEeccccCCc--------------eEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcccccee
Confidence            6899999999988887754332              3467877  67766665433221  11110000 0000000001


Q ss_pred             CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC--cccCCccccccccccccCCCceEEEEECCCCcEEE-
Q 003907          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP--VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-  363 (787)
Q Consensus       287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~--~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~-  363 (787)
                      +|.+..+                           .+......  ...................++.+.+||+.++.... 
T Consensus       182 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         182 QPDVLAV---------------------------WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CCBCCCC---------------------------CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             cCCccee---------------------------eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            1110000                           00000000  00000000000011234456789999999887554 


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                      .+..|...+..++++|++.+++.++  + .|++||+..       +          ..+..+.-+   ..+.+++|||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dG  291 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGAY--N-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDG  291 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEE--S-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTS
T ss_pred             EecCCCcceEEEEecccceEEEEcc--c-cEEEEECCC-------C----------cEEEEEcCC---CCEEEEEECCCC
Confidence            4567888899999999999998775  3 599999965       2          345554422   357899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg  465 (787)
                      ++|++++.+++|.|||+...+.
T Consensus       292 ~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         292 STVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             CEEEEESBSSEEEEEETTTCCE
T ss_pred             CEEEEEeCCCcEEEEECCCCcE
Confidence            9999999999999999987543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.2e-14  Score=144.34  Aligned_cols=263  Identities=14%  Similarity=0.056  Sum_probs=147.3

Q ss_pred             eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (787)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr  176 (787)
                      +.+++..|++.|..|+|.|+             ..+||+.+.                                 +++|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~-------------~~~L~s~s~---------------------------------Dg~v~   36 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPS-------------KSLLLITSW---------------------------------DGSLT   36 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGG-------------GTEEEEEET---------------------------------TSEEE
T ss_pred             eEEcCCCCCCCEEEEEEeCC-------------CCEEEEEEC---------------------------------CCeEE
Confidence            45677888899999999975             237766332                                 36999


Q ss_pred             EEECCCCe----EEEEEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          177 FYSFQSHC----YEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       177 lWdlktg~----~v~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      |||+.++.    +...+.+..+|.+|+|++   .+|++|. ++.|++||..+.........+....            ..
T Consensus        37 iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~------------~~  104 (342)
T d1yfqa_          37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL------------GI  104 (342)
T ss_dssp             EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS------------CE
T ss_pred             EEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc------------cc
Confidence            99986553    344456778999999975   3677665 5689999998887655544322210            01


Q ss_pred             eeEE--ccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907          249 PMAV--GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (787)
Q Consensus       249 ~lAl--spr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~  326 (787)
                      ....  +...++.++.+..+     ..|+...+...        ....                ..+......    ...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~-----~~wd~~~~~~~--------~~~~----------------~~~~~~~~~----~~~  151 (342)
T d1yfqa_         105 CRICKYGDDKLIAASWDGLI-----EVIDPRNYGDG--------VIAV----------------KNLNSNNTK----VKN  151 (342)
T ss_dssp             EEEEEETTTEEEEEETTSEE-----EEECHHHHTTB--------CEEE----------------EESCSSSSS----SCC
T ss_pred             cccccccccccccccccccc-----ceeeccccccc--------eeee----------------ccccccccc----cee
Confidence            1111  22455554433110     11221110000        0000                000000000    000


Q ss_pred             CCcccCCccccccccccccCCCceEEEEECCCCcEEE---EeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS---QFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPS  402 (787)
Q Consensus       327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~---~~~aH~~pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~  402 (787)
                      ....    ..........+..+|.|++||+...+...   ....+...+.+.++ +.++..+++++.+|. +.+|+....
T Consensus       152 ~~~~----~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~  226 (342)
T d1yfqa_         152 KIFT----MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQ  226 (342)
T ss_dssp             CEEE----EEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTT
T ss_pred             eeee----eeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCC
Confidence            0000    00011123456789999999998765322   23344455555554 557889999999775 899998542


Q ss_pred             cccCCCCCCccccCCcceEEEEEecc-----cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG-----~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      ...         ............+.     .+...|.+|+|+|++++||+|+.||+|+|||++...
T Consensus       227 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         227 GDD---------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCS---------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             cce---------eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            110         00000111111111     122358999999999999999999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-13  Score=135.58  Aligned_cols=211  Identities=15%  Similarity=0.174  Sum_probs=133.5

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l  250 (787)
                      ++|+|||+++++++++++.+ ..|.+|++++++|+++. ++.|++|++.+++...........             ....
T Consensus        35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-------------~~~~  101 (293)
T d1p22a2          35 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------------VLHL  101 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------------EEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccc-------------cccc
Confidence            68999999999999999865 69999999999999866 557999999998866655432221             0011


Q ss_pred             EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (787)
Q Consensus       251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s  330 (787)
                      ......++.+.....     ...|+........          ..               ..+..+      ........
T Consensus       102 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~---------------~~~~~~------~~~v~~~~  145 (293)
T d1p22a2         102 RFNNGMMVTCSKDRS-----IAVWDMASPTDIT----------LR---------------RVLVGH------RAAVNVVD  145 (293)
T ss_dssp             ECCTTEEEEEETTSC-----EEEEECSSSSCCE----------EE---------------EEECCC------SSCEEEEE
T ss_pred             cccccceeecccccc-----eeEeecccccccc----------cc---------------cccccc------ccccccce
Confidence            111144444433210     0111111100000          00               000000      00000000


Q ss_pred             cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                      +      .......+..|+.|++||+.+++.+..+.+|...|..+.++  +.+|++++.||+ |+|||+..       + 
T Consensus       146 ~------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~-------~-  208 (293)
T d1p22a2         146 F------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIEC-------G-  208 (293)
T ss_dssp             E------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTT-------C-
T ss_pred             e------cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEeccc-------c-
Confidence            0      00112245678999999999999999999999999988885  568999999776 99999854       2 


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                               ..+..+. +. ...|.  .+++++++|++++.||+|+|||+..
T Consensus       209 ---------~~~~~~~-~~-~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         209 ---------ACLRVLE-GH-EELVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ---------CEEEEEC-CC-SSCEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             ---------eeeeeec-cc-ceeee--eccccceEEEEEcCCCEEEEEECCC
Confidence                     3444443 32 23344  4678899999999999999999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.62  E-value=9.1e-13  Score=132.29  Aligned_cols=261  Identities=16%  Similarity=0.103  Sum_probs=161.3

Q ss_pred             EEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCc
Q 003907           78 LLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV  156 (787)
Q Consensus        78 L~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~  156 (787)
                      .+.+..+ .+.|||++ ++++.+.+...+ .+..+.+.|+.           +  .|++....                 
T Consensus         5 yV~~~~~~~v~v~D~~-t~~~~~~i~~g~-~p~~va~spdG-----------~--~l~v~~~~-----------------   52 (301)
T d1l0qa2           5 YIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPDG-----------T--KVYVANAH-----------------   52 (301)
T ss_dssp             EEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTTS-----------S--EEEEEEGG-----------------
T ss_pred             EEEECCCCEEEEEECC-CCeEEEEEECCC-CceEEEEeCCC-----------C--EEEEEECC-----------------
Confidence            3445454 49999995 466666665543 45778888742           2  55542211                 


Q ss_pred             ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCC
Q 003907          157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPV  232 (787)
Q Consensus       157 r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~  232 (787)
                                     .++|++||+++++.++++.....+..+.+++  +.++++.  +..+.+||..+++....+..+..
T Consensus        53 ---------------~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (301)
T d1l0qa2          53 ---------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS  117 (301)
T ss_dssp             ---------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             ---------------CCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeecccccc
Confidence                           2589999999999999999888889999977  4555443  34799999999988888775443


Q ss_pred             cccCCCCccccccccceeEEcc--ceEEEecC-CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccc
Q 003907          233 PQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (787)
Q Consensus       233 p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~-~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~  309 (787)
                      +              ..++++|  +++..+.. +..     ...++..+.            ..+               
T Consensus       118 ~--------------~~~~~~~dg~~~~~~~~~~~~-----~~~~~~~~~------------~~~---------------  151 (301)
T d1l0qa2         118 P--------------LGLALSPDGKKLYVTNNGDKT-----VSVINTVTK------------AVI---------------  151 (301)
T ss_dssp             E--------------EEEEECTTSSEEEEEETTTTE-----EEEEETTTT------------EEE---------------
T ss_pred             c--------------eEEEeecCCCeeeeeeccccc-----eeeeecccc------------cee---------------
Confidence            2              3466666  45444332 110     000111110            000               


Q ss_pred             ceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 003907          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV  389 (787)
Q Consensus       310 ~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~  389 (787)
                       +.+.       ..........+++.+...   ......+.+.+|+....+....+..+. ....++|+++|+.++.+..
T Consensus       152 -~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~  219 (301)
T d1l0qa2         152 -NTVS-------VGRSPKGIAVTPDGTKVY---VANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNV  219 (301)
T ss_dssp             -EEEE-------CCSSEEEEEECTTSSEEE---EEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEE
T ss_pred             -eecc-------cCCCceEEEeecccccee---eecccccccccccccceeeeecccccC-Ccceeeccccccccccccc
Confidence             0000       000000111112221111   122345778899988887777766654 4577899999999877654


Q ss_pred             C--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEeCCCC
Q 003907          390 Y--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       390 d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-As~S~dgTVhIwdl~~~  463 (787)
                      +  ...|++||+..       +          ..+..+..|   ..+.+++|||||++| ++++.+++|+|||+++.
T Consensus       220 ~~~~~~v~v~D~~t-------~----------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         220 DKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cceeeeeeeeecCC-------C----------eEEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            3  24699999854       2          344455433   358999999999987 57778999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.61  E-value=8.3e-14  Score=151.35  Aligned_cols=103  Identities=8%  Similarity=0.042  Sum_probs=75.3

Q ss_pred             cCCCceEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEE-------EEcCCCEEEEEeCCCCcccCCCCC
Q 003907          345 MDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVT-------ASVYGNNINIFRIMPSCMRSGSGN  410 (787)
Q Consensus       345 ~~~dG~V~IwDl~s-------~~~v~~~~aH~~pIsaLaFSpdG~lLAT-------aS~dG~~IrVWdi~~~~~~~~~g~  410 (787)
                      ...++.+.+|+...       .+....+.+|...+.+++|+|||++|++       ++.++ .|+|||+..       + 
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~-tv~vwd~~t-------~-  342 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ-SVAVFDLKN-------L-  342 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT-CEEEEETTC-------T-
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC-EEEEEECCC-------C-
Confidence            45678999998755       3688899999999999999999999994       44444 599999864       2 


Q ss_pred             CccccCCcceEEEEEec-------ccccccEEEEEEccCCCEEEEE-----eCCCeEEEEeCCCCCC
Q 003907          411 HKYDWNSSHVHLYKLHR-------GITSATIQDICFSHYSQWIAIV-----SSKGTCHVFVLSPFGG  465 (787)
Q Consensus       411 ~~~~~~~s~~~l~~l~r-------G~~~a~I~slaFSpDg~~LAs~-----S~dgTVhIwdl~~~gg  465 (787)
                               ...+++..       +.+...|..++|||||++|+.+     +.+++|+|||..+.+.
T Consensus       343 ---------~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         343 ---------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             ---------TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             ---------CcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence                     11222210       1122358899999999987543     4689999999987643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.57  E-value=2.6e-13  Score=138.63  Aligned_cols=290  Identities=11%  Similarity=0.036  Sum_probs=166.1

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCceeEeeee-ccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (787)
Q Consensus        74 ~~~vL~lG~~~-G~qVWdv~~~~~~~ells~-~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~  151 (787)
                      .++.|+++..+ .+.|||++ ++++...+.. +...+..+.+.|+.           +  .|++ ++..           
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~-t~~~~~t~~~~~~~~p~~l~~spDG-----------~--~l~v-~~~~-----------   60 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDN-----------R--TAYV-LNNH-----------   60 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTS-----------S--EEEE-EETT-----------
T ss_pred             CCcEEEEEcCCCEEEEEECC-CCCEEEEEEcCCCCCcceEEECCCC-----------C--EEEE-EECC-----------
Confidence            56788888876 49999995 4666666654 34456788888752           2  4444 3211           


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-------cEEEEEecC--CeEEEEe-------------
Q 003907          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVGL-------------  209 (787)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-------~V~sV~~s~--~~LaV~~-------------  209 (787)
                                          .++|.+||+.+++.+.++....       .+..+.+++  +.|.++.             
T Consensus        61 --------------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~  120 (346)
T d1jmxb_          61 --------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  120 (346)
T ss_dssp             --------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             --------------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence                                2589999999999999887543       245777776  5666543             


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC--cceecccc-CCCCCcCC
Q 003907          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN--SGRLSPQN-LTPSGVSP  284 (787)
Q Consensus       210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~--~g~~s~q~-lt~~~~s~  284 (787)
                      +..+.+||..+++....+..+..|.           +...++.++  +.++. +.+..++.  .+...... ........
T Consensus       121 ~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (346)
T d1jmxb_         121 PPRLEVFSTADGLEAKPVRTFPMPR-----------QVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALPLRNWNRKG  188 (346)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCS-----------SCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEECSTTCCCTT
T ss_pred             cceEEEEecccceeeeEEEeeeccC-----------ceEEEEecCCCEEEEe-CCcceEEEccCCCEEEEEecCCCccce
Confidence            4568889888887665555433331           012233444  33333 22222111  11100000 00000111


Q ss_pred             CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (787)
Q Consensus       285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~  364 (787)
                      ..+|.+..+.+....+          ..+......         ....    ............+.+.+||+.++.....
T Consensus       189 ~~~~~~~~~~~~~~~~----------~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1jmxb_         189 YSAPDVLYFWPHQSPR----------HEFSMLYTI---------ARFK----DDKQDPATADLLYGYLSVDLKTGKTHTQ  245 (346)
T ss_dssp             BCCCBCCCCCCCCCTT----------CEEEEEEEE---------EEC-----------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEeccccEEEEEecCC----------CceEeeeee---------eeec----cCceeEeeccCCceEEEEECCCCceEEE
Confidence            1122211110000000          000000000         0000    0000012334467899999998876544


Q ss_pred             -eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907          365 -FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (787)
Q Consensus       365 -~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (787)
                       +..|...+..+.+++++.+++.++. + .|.+||+..       +          ..+..+..|   ..+.+++|||||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~v~d~~~-------~----------~~~~~~~~~---~~~~~va~s~DG  303 (346)
T d1jmxb_         246 EFADLTELYFTGLRSPKDPNQIYGVL-N-RLAKYDLKQ-------R----------KLIKAANLD---HTYYCVAFDKKG  303 (346)
T ss_dssp             EEEECSSCEEEEEECSSCTTEEEEEE-S-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECSSS
T ss_pred             EeecccceeEEEEEeCCCCEEEEecC-C-eEEEEECCC-------C----------cEEEEEcCC---CCEEEEEEcCCC
Confidence             5678889999999999999988876 4 499999854       2          345555433   348899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCc
Q 003907          444 QWIAIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       444 ~~LAs~S~dgTVhIwdl~~~gg~  466 (787)
                      ++|++++.|++|+|||+.+.+..
T Consensus       304 ~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         304 DKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             SCEEEESBSSEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCcEEEEECccCCEE
Confidence            99999999999999999875443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.48  E-value=1.2e-12  Score=134.51  Aligned_cols=171  Identities=9%  Similarity=0.014  Sum_probs=125.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE-EeCC--eEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV-~~~~--~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      +.|.+||+++++.++ +.+...|.+++|+|  +.|++ +.++  .|++||+.+++.. .+..+...             .
T Consensus        24 g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~-------------v   88 (360)
T d1k32a3          24 GQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGN-------------V   88 (360)
T ss_dssp             TEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCS-------------E
T ss_pred             CeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCce-------------E
Confidence            479999999888765 45677999999998  46665 4443  5999999988643 33333321             2


Q ss_pred             ceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907          248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (787)
Q Consensus       248 ~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s  325 (787)
                      ..++++|  ++|+++                                                                 
T Consensus        89 ~~~~~spdg~~l~~~-----------------------------------------------------------------  103 (360)
T d1k32a3          89 FAMGVDRNGKFAVVA-----------------------------------------------------------------  103 (360)
T ss_dssp             EEEEECTTSSEEEEE-----------------------------------------------------------------
T ss_pred             Eeeeeccccccccee-----------------------------------------------------------------
Confidence            3344444  233332                                                                 


Q ss_pred             CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEE
Q 003907          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINI  396 (787)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d---------G~~IrV  396 (787)
                                          ..++.+++||+.+++....+..|...+.+++|+|||++||.++.+         +..+++
T Consensus       104 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3         104 --------------------NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             --------------------ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             --------------------ccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence                                346789999999999999999999999999999999999976542         235889


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ||+..       +           ....+..+  ...+..++|+|||++|++++.|+++++|+....
T Consensus       164 ~d~~~-------~-----------~~~~~~~~--~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         164 YDMEG-------R-----------KIFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EETTT-------T-----------EEEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ecccc-------C-----------ceeeeccc--ccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            99854       2           22333322  345788999999999999999999999997643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.6e-10  Score=115.88  Aligned_cols=283  Identities=12%  Similarity=0.075  Sum_probs=150.2

Q ss_pred             eEEEEEecC-cEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907           76 QVLLLGYQN-GFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (787)
Q Consensus        76 ~vL~lG~~~-G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~  152 (787)
                      .|++.+..+ .++|||++..+.+ +++.  .+.+.|..|++.|+.           +  .|++...              
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l-~~~~~~~~~~~v~~la~spDG-----------~--~L~v~~~--------------   56 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGAL-TLTQVVDVPGQVQPMVVSPDK-----------R--YLYVGVR--------------   56 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE-EEEEEEECSSCCCCEEECTTS-----------S--EEEEEET--------------
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe-EEEEEEcCCCCEeEEEEeCCC-----------C--EEEEEEC--------------
Confidence            466777555 5999999765543 4443  566889999999852           2  5544221              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCcee
Q 003907          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENK  224 (787)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~----~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l  224 (787)
                                        .+++|++|++....    .+........+..|++++  ++|+++.  +..|.+|+.......
T Consensus        57 ------------------~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~  118 (333)
T d1ri6a_          57 ------------------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV  118 (333)
T ss_dssp             ------------------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred             ------------------CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce
Confidence                              13689999987653    333334556677899988  6777765  347899987766544


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (787)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s  302 (787)
                      ........+.           ....++++|  +++..+.....    ....++....          .........    
T Consensus       119 ~~~~~~~~~~-----------~~~~v~~s~d~~~~~~~~~~~~----~i~~~~~~~~----------~~~~~~~~~----  169 (333)
T d1ri6a_         119 GVVDVVEGLD-----------GCHSANISPDNRTLWVPALKQD----RICLFTVSDD----------GHLVAQDPA----  169 (333)
T ss_dssp             EEEEEECCCT-----------TBCCCEECTTSSEEEEEEGGGT----EEEEEEECTT----------SCEEEEEEE----
T ss_pred             ecccccCCCc-----------cceEEEeeecceeeeccccccc----eeeEEEeccC----------Ccceeeece----
Confidence            4443222210           112356666  55554432110    0000000000          000000000    


Q ss_pred             hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc----EEEEec------cCCCCe
Q 003907          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFK------AHTSPI  372 (787)
Q Consensus       303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~------aH~~pI  372 (787)
                               .     ...........+.++++.....   ......+...+|+.....    ....+.      ......
T Consensus       170 ---------~-----~~~~~g~~p~~i~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         170 ---------E-----VTTVEGAGPRHMVFHPNEQYAY---CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             ---------E-----EECSTTCCEEEEEECTTSSEEE---EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             ---------e-----eeeecCCCccEEEEeccceeEE---eeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence                     0     0000000001112222221111   122344566677654321    112221      233456


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-C
Q 003907          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-S  451 (787)
Q Consensus       373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~  451 (787)
                      ..++|++||+++..+......+.+|++...      +.        ...+....  .+...+.+++|||||++|++++ +
T Consensus       233 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTASLITVFSVSED------GS--------VLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTT------SC--------CEEEEEEE--ECSSSCCCEEECTTSSEEEEECTT
T ss_pred             eeEEEecccCceeeecccCCeEEEEEEcCC------CC--------EEEEEEEe--CCCCCeeEEEEeCCCCEEEEEECC
Confidence            789999999988888776777999998542      10        01111111  1123467899999999987775 5


Q ss_pred             CCeEEEEeCCCCCCc
Q 003907          452 KGTCHVFVLSPFGGD  466 (787)
Q Consensus       452 dgTVhIwdl~~~gg~  466 (787)
                      +++|.||+++...|.
T Consensus       297 ~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         297 SHHISVYEIVGEQGL  311 (333)
T ss_dssp             TCEEEEEEEETTTTE
T ss_pred             CCeEEEEEEECCCCc
Confidence            689999988765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=1.8e-10  Score=126.10  Aligned_cols=181  Identities=10%  Similarity=-0.026  Sum_probs=125.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE--EEEecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~--tl~t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++|.|||+++++++++++....+..|+|+|  ++|+++. ++.|.+||+.|++...  ++.....               
T Consensus        42 g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~---------------  106 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---------------  106 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---------------
T ss_pred             CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC---------------
Confidence            699999999999999999888899999998  6888765 5789999998887433  2222111               


Q ss_pred             ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (787)
Q Consensus       248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~  327 (787)
                       +     +-++++                       +.++|++..+++                                
T Consensus       107 -~-----~~~~~s-----------------------~~~SpDG~~l~v--------------------------------  125 (432)
T d1qksa2         107 -A-----RSIETS-----------------------KMEGWEDKYAIA--------------------------------  125 (432)
T ss_dssp             -E-----EEEEEC-----------------------CSTTCTTTEEEE--------------------------------
T ss_pred             -C-----CCeEEe-----------------------cccCCCCCEEEE--------------------------------
Confidence             1     111221                       123333332211                                


Q ss_pred             CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-----------CCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-----------TSPISALCFDPSGTLLVTASVYGNNINI  396 (787)
Q Consensus       328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-----------~~pIsaLaFSpdG~lLATaS~dG~~IrV  396 (787)
                                      .+..+++|+|||..+++++..+..|           .....++.|+|+|+.++.+..+...|.+
T Consensus       126 ----------------s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         126 ----------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             ----------------EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             ----------------EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence                            2345789999999999988887654           3456689999999987666655567999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCC
Q 003907          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF  463 (787)
Q Consensus       397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~  463 (787)
                      ||...       +        ....+.++.-|   ..+.+++|+|||+++++++. ++++.+++....
T Consensus       190 ~d~~~-------~--------~~~~~~~i~~g---~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         190 VDYTD-------L--------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EETTC-------S--------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEccC-------C--------CcceEEEEccc---CccccceECCCCCEEEEeccccceEEEeecccc
Confidence            99753       1        01233444322   35789999999998877775 567888888753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=2.7e-10  Score=123.05  Aligned_cols=250  Identities=12%  Similarity=0.029  Sum_probs=135.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEE--ecCCcccCCCCcccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL--TYPVPQLAGQGAVGINVGY  247 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~--t~p~p~~~~~~~~~~~~~~  247 (787)
                      ++|+|||+++++++.+++....+..|+|+|  ++|+++. ++.|++||+.|++......  ....+.         + ..
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~---------~-~~  111 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR---------S-VE  111 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE---------E-EE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc---------c-eE
Confidence            699999999999999999988999999998  7887765 5689999999998654432  211110         0 00


Q ss_pred             ceeEEcc--ceEEEecC-CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907          248 GPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (787)
Q Consensus       248 ~~lAlsp--r~LAyas~-~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~  324 (787)
                      ...+++|  ++|+.+.. +.     ....|+..+.            .+.....         +.....  ....+.+++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~-----~v~i~d~~~~------------~~~~~~~---------~~~~~~--~~~~~~~~~  163 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPP-----QFAIMDGETL------------EPKQIVS---------TRGMTV--DTQTYHPEP  163 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESS-----EEEEEETTTC------------CEEEEEE---------CCEECS--SSCCEESCC
T ss_pred             EeeeecCCCCEEEEeecCCC-----eEEEEcCCcc------------ceeEEee---------ccCCCc--cceeecCCC
Confidence            1123334  55544431 11     0111221111            0000000         000000  000000111


Q ss_pred             CCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc
Q 003907          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC  403 (787)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~  403 (787)
                      .......+++.+...   ......+.+.+++..+... ......|...+..++|+|+|+++.++..+...+.+|+.....
T Consensus       164 ~~~~i~~s~d~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         164 RVAAIIASHEHPEFI---VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             CEEEEEECSSSSEEE---EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             ceeEEEECCCCCEEE---EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence            111111122111111   1223346677777666542 223446778899999999999999999888889999875421


Q ss_pred             cc-----C--------------C---------CCCC--------ccccCC-cceEEEEEecccccccEEEEEEccCCCEE
Q 003907          404 MR-----S--------------G---------SGNH--------KYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWI  446 (787)
Q Consensus       404 ~~-----~--------------~---------~g~~--------~~~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (787)
                      ..     .              .         .+..        ...+.. ......++. | +...+..++|||||++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g-~~~~v~~v~~sPdg~~l  318 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-G-QGGGSLFIKTHPKSSHL  318 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-C-SSSCCCCEECCTTCSEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-c-CCCceeEEEcCCCCceE
Confidence            00     0              0         0000        000000 012233332 3 23458899999999999


Q ss_pred             EE-------EeCCCeEEEEeCCCCCC
Q 003907          447 AI-------VSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       447 As-------~S~dgTVhIwdl~~~gg  465 (787)
                      ++       ++.++||+|||+.....
T Consensus       319 ~v~~~~~~s~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         319 YVDTTFNPDARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEeecCCCCcccCCEEEEEECCCCCc
Confidence            95       45689999999986543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.25  E-value=1.7e-09  Score=107.76  Aligned_cols=174  Identities=11%  Similarity=0.086  Sum_probs=126.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (787)
                      ++|.+||+++++.+++++....+..|++++  ++|+++.  +++|++||+.+++.+.++..+..|               
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~---------------   76 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP---------------   76 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE---------------
T ss_pred             CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc---------------
Confidence            689999999999999999988899999998  5665543  468999999999988887654332               


Q ss_pred             eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (787)
Q Consensus       249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~  328 (787)
                            +.+++..+.                           ..++                                  
T Consensus        77 ------~~~~~~~~~---------------------------~~~~----------------------------------   89 (301)
T d1l0qa2          77 ------QGVAVSPDG---------------------------KQVY----------------------------------   89 (301)
T ss_dssp             ------EEEEECTTS---------------------------SEEE----------------------------------
T ss_pred             ------ccccccccc---------------------------cccc----------------------------------
Confidence                  122332211                           0000                                  


Q ss_pred             cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (787)
Q Consensus       329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~  408 (787)
                                    .....++.+.+||..+++.+..+..+. ...+++|+|+|..++.+...+..+.+|+...       
T Consensus        90 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-------  147 (301)
T d1l0qa2          90 --------------VTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVT-------  147 (301)
T ss_dssp             --------------EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-------
T ss_pred             --------------ccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccc-------
Confidence                          012346788999999999888887664 5678999999999988777788899999854       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCC
Q 003907          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF  463 (787)
Q Consensus       409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~  463 (787)
                      +          ..+..+..   ...+..++|+||++++++++.+ +.+.+|+....
T Consensus       148 ~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         148 K----------AVINTVSV---GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             T----------EEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             c----------ceeeeccc---CCCceEEEeeccccceeeecccccccccccccce
Confidence            1          34444432   2347889999999998888765 56677776543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=5.9e-09  Score=113.70  Aligned_cols=191  Identities=14%  Similarity=0.119  Sum_probs=121.8

Q ss_pred             EEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907           77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (787)
Q Consensus        77 vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~  155 (787)
                      ++++-.++| +.|||.+ ++++...+..+. .|..++|.|+.           +  +|++.+.                 
T Consensus        34 ~~v~~~d~g~v~v~D~~-t~~v~~~~~~g~-~~~~v~fSpDG-----------~--~l~~~s~-----------------   81 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGS-TYEIKTVLDTGY-AVHISRLSASG-----------R--YLFVIGR-----------------   81 (432)
T ss_dssp             EEEEETTTTEEEEEETT-TCCEEEEEECSS-CEEEEEECTTS-----------C--EEEEEET-----------------
T ss_pred             EEEEEcCCCEEEEEECC-CCcEEEEEeCCC-CeeEEEECCCC-----------C--EEEEEcC-----------------
Confidence            345555555 9999995 577777777654 58899999863           2  6665321                 


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCCC----cEEEEEecC--CeEEE-Ee-CCeEEEEECCCCceeE
Q 003907          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFRS----SVCMVRCSP--RIVAV-GL-ATQIYCFDALTLENKF  225 (787)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f~s----~V~sV~~s~--~~LaV-~~-~~~I~iwD~~T~e~l~  225 (787)
                                      +++|++||+++++  .+.+++-..    .+.++.+++  ++|++ +. ++.|.+||+.+++.+.
T Consensus        82 ----------------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          82 ----------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             ----------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             ----------------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence                            2589999999876  455555333    334445554  56644 43 5789999999999888


Q ss_pred             EEEecCCcccCCCCccccccccceeEEc--cceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907          226 SVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (787)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~lAls--pr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk  303 (787)
                      ++..+...             ....+++  ++.+|...                         +|++..++         
T Consensus       146 ~~~~~~~~-------------~~~~~~~~~~~~~~v~~-------------------------s~dg~~~~---------  178 (432)
T d1qksa2         146 IQSTRGMT-------------YDEQEYHPEPRVAAILA-------------------------SHYRPEFI---------  178 (432)
T ss_dssp             EEECCEEC-------------TTTCCEESCCCEEEEEE-------------------------CSSSSEEE---------
T ss_pred             eeccCCcc-------------ccceeccCCCceeEEEE-------------------------CCCCCEEE---------
Confidence            88754321             0111221  12222211                         01111111         


Q ss_pred             hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC
Q 003907          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT  382 (787)
Q Consensus       304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~  382 (787)
                                                             .....++.|.+||..+.+...... .+...+..++|+|||+
T Consensus       179 ---------------------------------------vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         179 ---------------------------------------VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             ---------------------------------------EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             ---------------------------------------EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence                                                   112346889999998876544333 3456788999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCC
Q 003907          383 LLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       383 lLATaS~dG~~IrVWdi~~  401 (787)
                      +|++++.++..+.++|...
T Consensus       220 ~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTT
T ss_pred             EEEEeccccceEEEeeccc
Confidence            9999999898999999854

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=1.4e-08  Score=104.29  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=70.0

Q ss_pred             ccCCCceEEEEECCCCcEE--EEeccCC----------CCeEEEEECCCCCEEEEEEcCC---------CEEEEEeCCCC
Q 003907          344 DMDNAGIVVVKDFVTRAII--SQFKAHT----------SPISALCFDPSGTLLVTASVYG---------NNINIFRIMPS  402 (787)
Q Consensus       344 s~~~dG~V~IwDl~s~~~v--~~~~aH~----------~pIsaLaFSpdG~lLATaS~dG---------~~IrVWdi~~~  402 (787)
                      ....+|.+.+||+..++..  .....|.          .....++++++|+.++.++.++         ..|.+||... 
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-  289 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-  289 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-
Confidence            4467899999999877532  2222221          2334689999999888776543         3689999854 


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC--EEEEEeCCCeEEEEeCCCCCC
Q 003907          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ--WIAIVSSKGTCHVFVLSPFGG  465 (787)
Q Consensus       403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~--~LAs~S~dgTVhIwdl~~~gg  465 (787)
                            +          +.+.++..+   ..+.+++|||||+  ++++++.|++|+|||+.+.+.
T Consensus       290 ------~----------~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         290 ------G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             ------C----------CEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ------C----------cEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                  2          344444332   3478999999998  456677899999999987543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=1.5e-08  Score=102.00  Aligned_cols=145  Identities=15%  Similarity=0.077  Sum_probs=95.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeEEE-Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 003907          172 PTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAV-GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN  244 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~LaV-~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~  244 (787)
                      +++|++||++++++++++..+.   .+.+|++++  ++|+| +. ++.|++||+.|++.+.++..+.....      .  
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~------~--   81 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER------V--   81 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE------E--
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc------c--
Confidence            3699999999999999998643   578899987  56654 33 56799999999999888765322100      0  


Q ss_pred             cccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (787)
Q Consensus       245 ~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p  322 (787)
                      .....++++|  ++|+.+......     .                                                  
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~-----~--------------------------------------------------  106 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRL-----E--------------------------------------------------  106 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEE-----C--------------------------------------------------
T ss_pred             cceeeEEEcCCCcEEEEeecCCcc-----e--------------------------------------------------
Confidence            0122356655  444443321000     0                                                  


Q ss_pred             CCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                                        .......++.+.+||..+++.+..+..+ ..+..++|+|||++|++++.+   +.+||...
T Consensus       107 ------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~---~~~~d~~~  163 (337)
T d1pbyb_         107 ------------------LTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD---LHVMDPEA  163 (337)
T ss_dssp             ------------------SSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS---EEEEETTT
T ss_pred             ------------------eeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC---cceeeeec
Confidence                              0001124567888999988888887755 457788999999999887652   56777643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.97  E-value=2.3e-07  Score=95.97  Aligned_cols=67  Identities=9%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE--EEEEeCCCeEEEEe
Q 003907          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW--IAIVSSKGTCHVFV  459 (787)
Q Consensus       382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~--LAs~S~dgTVhIwd  459 (787)
                      ..+++... +..|.+||+..       +          ..+..+..+   ..+.+++|||||++  +++++.|++|+|||
T Consensus       289 ~~~~~~~~-~~~v~~~d~~t-------~----------~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         289 SAWKLHAA-AKEVTSVTGLV-------G----------QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             ceEEeecC-CCeEEEEECCC-------C----------cEEEEecCC---CCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            33344444 34588999854       2          344444322   35889999999984  47889999999999


Q ss_pred             CCCCCCcccc
Q 003907          460 LSPFGGDSGF  469 (787)
Q Consensus       460 l~~~gg~~~~  469 (787)
                      +...+....+
T Consensus       348 ~~tg~~~~~~  357 (373)
T d2madh_         348 AGAGDQDQST  357 (373)
T ss_pred             CCCCCEEEEE
Confidence            9875544333

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.7e-07  Score=91.99  Aligned_cols=186  Identities=13%  Similarity=0.180  Sum_probs=116.2

Q ss_pred             CEEEEEECCCC---eEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907          173 TAVRFYSFQSH---CYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (787)
Q Consensus       173 ~tVrlWdlktg---~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~  245 (787)
                      ++|++||+.+.   +.+.+++....|..|+++|  +.|.++.  ++.|++|++.+.....++..+...     +.     
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-----~~-----   83 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-----PG-----   83 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-----SS-----
T ss_pred             CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc-----CC-----
Confidence            68999998754   4566677888999999998  5776655  468999998766544444322110     00     


Q ss_pred             ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (787)
Q Consensus       246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~  323 (787)
                      ...-++++|  ++|+.+.                                                              
T Consensus        84 ~p~~l~~spDg~~l~v~~--------------------------------------------------------------  101 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGS--------------------------------------------------------------  101 (333)
T ss_dssp             CCSEEEECTTSSEEEEEE--------------------------------------------------------------
T ss_pred             CceEEEEcCCCCEEeecc--------------------------------------------------------------
Confidence            001244444  3333322                                                              


Q ss_pred             CCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (787)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~--~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~  401 (787)
                                            ..++.|.+|+........  ....|...+.++.|+|+|+++++++..+..|.+|+...
T Consensus       102 ----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         102 ----------------------YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ----------------------TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ----------------------cCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence                                  124456666665544332  33456677889999999999999998888899999754


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCC
Q 003907          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG  465 (787)
Q Consensus       402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg  465 (787)
                      .      +.       ...................++|++++.++.... ..++..+|++.....
T Consensus       160 ~------~~-------~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         160 D------GH-------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             T------SC-------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             C------Cc-------ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            2      10       000111111111223478999999999887665 556788998765443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.65  E-value=8.8e-08  Score=96.63  Aligned_cols=105  Identities=7%  Similarity=-0.030  Sum_probs=77.8

Q ss_pred             ccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907          342 GADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (787)
Q Consensus       342 ~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~  420 (787)
                      ++.+..++.|.|||+.+++++.+++ .|...+.+|+|+|||++|+.++..+..|.+||+..       +          .
T Consensus        11 l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-------~----------~   73 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-------C----------K   73 (346)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-------T----------E
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-------C----------e
Confidence            4567789999999999999999987 56667889999999998866655566799999864       2          3


Q ss_pred             EEEEEeccccc----ccEEEEEEccCCCEEEEEeC------------CCeEEEEeCCCC
Q 003907          421 HLYKLHRGITS----ATIQDICFSHYSQWIAIVSS------------KGTCHVFVLSPF  463 (787)
Q Consensus       421 ~l~~l~rG~~~----a~I~slaFSpDg~~LAs~S~------------dgTVhIwdl~~~  463 (787)
                      .+..+..+...    ..+..++|||||++|++++.            ++.+.+|+....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            44444332211    12567999999999988864            566777776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.62  E-value=1.6e-06  Score=90.45  Aligned_cols=57  Identities=5%  Similarity=-0.038  Sum_probs=44.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--------cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907          173 TAVRFYSFQSHCYEHVLRFRS--------SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT  229 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s--------~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t  229 (787)
                      .+|++||..+++.+..+..+.        ....+.+++  ++|+++.  .+.|.+||+.+++....+..
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            689999999999999887432        123577776  6777764  46899999999998887765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.51  E-value=1.8e-06  Score=88.95  Aligned_cols=98  Identities=12%  Similarity=-0.026  Sum_probs=69.2

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeE-------EEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPIS-------ALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIs-------aLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      ..++.|.|||+.+++.+..+..|..+..       .+.|+++|+.++....+ +..+.+|+...       +        
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-------~--------  158 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-------S--------  158 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-------C--------
Confidence            4578999999999999999887766553       46788888877665532 34577777643       1        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEeCCCCCCc
Q 003907          418 SHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~L-As~S~dgTVhIwdl~~~gg~  466 (787)
                        ..+...      ....++.|+|||+.+ ++.+.|+++.+|+.......
T Consensus       159 --~~~~~~------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         159 --SDDQLL------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             --eEEEEe------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence              111111      235689999999765 67889999999998765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=3.4e-06  Score=85.82  Aligned_cols=179  Identities=14%  Similarity=0.040  Sum_probs=111.8

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQG  239 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~  239 (787)
                      ++|.+||.++++.+.++.... +..+++++  +.|+++.           ++.|.+||+.+++.+.++..+..+..    
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~----  102 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF----  102 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC----
T ss_pred             CeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee----
Confidence            589999999999999987432 22678887  6666543           35799999999998888876443210    


Q ss_pred             ccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907          240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (787)
Q Consensus       240 ~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~  319 (787)
                               .....|..+++..+.                           ..+.                         
T Consensus       103 ---------~~~~~~~~~~~s~dg---------------------------~~~~-------------------------  121 (355)
T d2bbkh_         103 ---------LVGTYPWMTSLTPDG---------------------------KTLL-------------------------  121 (355)
T ss_dssp             ---------CBSCCGGGEEECTTS---------------------------SEEE-------------------------
T ss_pred             ---------ecCCCCceEEEecCC---------------------------CeeE-------------------------
Confidence                     000112223333221                           1000                         


Q ss_pred             cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCC
Q 003907          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGN  392 (787)
Q Consensus       320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~-------pIsaLaFSpdG~lLATaS~dG~  392 (787)
                                            ......+..+.+||..+++.+..+..+..       +...++|++||+.++....++.
T Consensus       122 ----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         122 ----------------------FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             ----------------------EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             ----------------------EecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence                                  00112345678888888888877765432       3345677777777766655555


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      .+.+++.....                       .+ ....+...+|++++..++.++.++++++|++...
T Consensus       180 ~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         180 TPEITHTEVFH-----------------------PE-DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             CCEEEECCCCS-----------------------CT-TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             eEEEEeccccc-----------------------ce-ecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence            55565543210                       00 1122455778889999999999999999998753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.32  E-value=2.1e-06  Score=92.75  Aligned_cols=107  Identities=12%  Similarity=0.065  Sum_probs=67.4

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+|.+.|||+.+++ +..+..|...+..++|||||++||..+.  ..+.+|++.........      ........+.-.
T Consensus        90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~--~~l~~~~~~~g~~~~~t------~~~~~~~~~~g~  160 (470)
T d2bgra1          90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSYRIT------WTGKEDIIYNGI  160 (470)
T ss_dssp             EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCEECC------SCCBTTTEEESB
T ss_pred             cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEeec--ccceEEECCCCceeeee------eccCCCcccccc
Confidence            35789999999887 5668889999999999999999999764  45899987532100000      000000000000


Q ss_pred             cc-----cccccEEEEEEccCCCEEEEEeCCCe-EEEEeCCC
Q 003907          427 RG-----ITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLSP  462 (787)
Q Consensus       427 rG-----~~~a~I~slaFSpDg~~LAs~S~dgT-VhIwdl~~  462 (787)
                      ..     ........+.|||||++||....|.+ +..|.+..
T Consensus       161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~  202 (470)
T d2bgra1         161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (470)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             cceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEe
Confidence            00     00012345789999999999987765 66666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.19  E-value=7.3e-05  Score=81.51  Aligned_cols=223  Identities=9%  Similarity=0.080  Sum_probs=129.7

Q ss_pred             CCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--C--eEEEEeCCeE------------------EEEECCCCceeEEE
Q 003907          172 PTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--R--IVAVGLATQI------------------YCFDALTLENKFSV  227 (787)
Q Consensus       172 p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~--~LaV~~~~~I------------------~iwD~~T~e~l~tl  227 (787)
                      .++|.++|+++++....++.+  ..+..+++++  +  +++...+..+                  ..+|..+++..+++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            469999999999998888765  5789999986  4  3443444433                  55899999988888


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (787)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l  305 (787)
                      ....+|              ..++++|  +|+..+....   +.. ...+..+....        ..+ .-......   
T Consensus       173 ~v~~~p--------------~~v~~spdGk~a~vt~~ns---e~~-~~id~~t~~~~--------d~i-~v~n~p~~---  222 (441)
T d1qnia2         173 IVDGNL--------------DNTDADYTGKYATSTCYNS---ERA-VDLAGTMRNDR--------DWV-VVFNVERI---  222 (441)
T ss_dssp             EESSCC--------------CCEEECSSSSEEEEEESCT---TCC-SSHHHHTCSSB--------CEE-EEEEHHHH---
T ss_pred             ecCCCc--------------cceEECCCCCEEEEEecCC---Cce-EEEeccCcceE--------EEE-EeCCccce---
Confidence            754443              3477777  6766554321   000 00000000000        000 00000000   


Q ss_pred             hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (787)
Q Consensus       306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA  385 (787)
                                  -...+++           +..     ....++.+.|++....+.+..++.+.+| ..++++|||++++
T Consensus       223 ------------~~~~~dG-----------k~~-----~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~  273 (441)
T d1qnia2         223 ------------AAAVKAG-----------NFK-----TIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFI  273 (441)
T ss_dssp             ------------HHHHHTT-----------CCB-----CCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEE
T ss_pred             ------------EEEecCC-----------CEE-----EeCCCCcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEE
Confidence                        0011111           111     1123577888888888888899888776 5689999999988


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      .++..+.+|.|||+...... ..+.  .+...  ....+..-|.   -....+|+++|+.+.+...|.+|..|++.
T Consensus       274 ~~~~~~~tvsv~d~~k~~~~-~~~~--~~~~~--~~~~~~~~gl---gplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         274 ANGKLSPTVSVIAIDKLDDL-FEDK--IELRD--TIVAEPELGL---GPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECTTSSBEEEEEGGGHHHH-TTTS--SCGGG--GEEECCBCCS---CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeCCcCCcEEEEEeehhhhH-hhcc--CCcce--EEEeeccccc---CcccceecCCceEEEcccccceEEEeccc
Confidence            77776777999998541100 0000  00000  0111111111   13457899999999999999999999985

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=0.00078  Score=70.58  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             CeEEEEECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccccEEEEEEcc-CC
Q 003907          371 PISALCFDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSH-YS  443 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~-----~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~-~~a~I~slaFSp-Dg  443 (787)
                      ....|.|+|||++|+++.....     .|-+|++...      +.        ......+..-. ....-.+++|+| ||
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~------g~--------~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCC------Cc--------eeeEeEeeEEEcCCCCccEEEecCCCC
Confidence            4567899999999988754111     2667776431      10        01111111111 112356799998 89


Q ss_pred             CEEEEEe-CCCeEEEEeCCCC
Q 003907          444 QWIAIVS-SKGTCHVFVLSPF  463 (787)
Q Consensus       444 ~~LAs~S-~dgTVhIwdl~~~  463 (787)
                      +||+++. .+++|.||+++..
T Consensus       322 ~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEeCCCCeEEEEEEeCC
Confidence            9887775 6799999998754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.96  E-value=1.7e-05  Score=82.45  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=71.8

Q ss_pred             CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcccCCCCCCccccCC
Q 003907          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNS  417 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~~~~~g~~~~~~~~  417 (787)
                      .+..|.+||..+++.+.++..|..+  .++|+|||+.|+.++..         +..|++||..+       +        
T Consensus        44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-------~--------  106 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F--------  106 (368)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C--------
T ss_pred             CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCC-------C--------
Confidence            3456778899999999999888766  58999999999987631         23499999854       2        


Q ss_pred             cceEEEEEec--cc---ccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907          418 SHVHLYKLHR--GI---TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (787)
Q Consensus       418 s~~~l~~l~r--G~---~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g  464 (787)
                        ..+.++..  +.   .......++|||||++|++++ .++++.+||+....
T Consensus       107 --~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_         107 --LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             --CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             --cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence              34444421  10   111234689999999998886 57999999998643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.86  E-value=1.8e-05  Score=85.13  Aligned_cols=96  Identities=14%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             CCceEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCCEEEEEEcC--------CCEEEEEeCCCCcccCCCCCCcc
Q 003907          347 NAGIVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGTLLVTASVY--------GNNINIFRIMPSCMRSGSGNHKY  413 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v~~~~-----aH~~pIsaLaFSpdG~lLATaS~d--------G~~IrVWdi~~~~~~~~~g~~~~  413 (787)
                      .+|.+.+||+.+++....+.     .|...|.+++|||||++||.++..        ...+.|||+..       +    
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-------~----  102 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-------R----  102 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-------T----
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-------C----
Confidence            46789999999998766554     455789999999999999998641        11367888854       2    


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                             .+..+..  +...+..++|||||++||... ++.+.+|++...
T Consensus       103 -------~~~~l~~--~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g  142 (470)
T d2bgra1         103 -------QLITEER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (470)
T ss_dssp             -------EECCSSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             -------ccccccc--CCccccccccccCcceeeEee-cccceEEECCCC
Confidence                   2222221  234588999999999999965 567899987643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.64  E-value=0.0014  Score=71.10  Aligned_cols=110  Identities=10%  Similarity=0.009  Sum_probs=65.9

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--------------EEEEeCCCCc----c-----c
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--------------INIFRIMPSC----M-----R  405 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~--------------IrVWdi~~~~----~-----~  405 (787)
                      +.+..+|..+.+...++.... ....++|+|||+++++++.+...              |.+++.....    .     .
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v  234 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI  234 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             ceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe
Confidence            467788999999888887654 46789999999999988764322              2333311000    0     0


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeCCCeEEEEeCCC
Q 003907          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLSP  462 (787)
Q Consensus       406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs-~S~dgTVhIwdl~~  462 (787)
                      .+.+....+.......++.+.-|.   ....+++||||+++++ +..++||.|||+.+
T Consensus       235 ~~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         235 GDSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             TTCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCCCcEEEEcccCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            001111111111112233333332   2456999999998755 56789999999975

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.027  Score=54.15  Aligned_cols=92  Identities=11%  Similarity=0.034  Sum_probs=57.2

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~  429 (787)
                      .|.+.++..+. ...+..+........|+|+|+.++..+.++....+|.....      +          ... ++..  
T Consensus       152 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~------~----------~~~-~~~~--  211 (269)
T d2hqsa1         152 QVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA------T----------GGV-QVLS--  211 (269)
T ss_dssp             EEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT------T----------CCE-EECC--
T ss_pred             eEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceeeeEeecc------c----------ccc-eEee--
Confidence            34455555443 23344455667778999999999998887766666654321      1          011 1211  


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC---CeEEEEeCC
Q 003907          430 TSATIQDICFSHYSQWIAIVSSK---GTCHVFVLS  461 (787)
Q Consensus       430 ~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~  461 (787)
                      ........+|||||++||-.+.+   ..+++++++
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            12345778999999999876654   356777765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.23  E-value=0.12  Score=50.92  Aligned_cols=96  Identities=16%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      .+.|++||.. ++.+.++.  ++......|+++++|+++++-+..+..|.+|+-.        |          ..+..+
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--------G----------~~~~~~  237 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL  237 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC--------C----------CEEEEE
Confidence            4567777753 45566663  3445567899999999888655445568999841        4          344455


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~  463 (787)
                      ..+........|++.+||+++ +++.++.|++|+....
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             eCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence            433333457899999999754 5567899999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.95  E-value=0.057  Score=55.78  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (787)
Q Consensus       371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S  450 (787)
                      -+.+++|+|||++|++++.....|.+|++...      |.        ..................++|+|||+++.+..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~------g~--------~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS------GE--------VELVGSVDAPDPGDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SC--------EEEEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCC------Cc--------eeeccceeecCCCCceEEEEECCCCceEEEec
Confidence            36789999999999999875557888886431      20        11222222211123478899999999885555


Q ss_pred             -CCCeEEEEeCCCCCC
Q 003907          451 -SKGTCHVFVLSPFGG  465 (787)
Q Consensus       451 -~dgTVhIwdl~~~gg  465 (787)
                       .+++|.+|+++....
T Consensus       212 e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         212 EAGNRICEYVIDPATH  227 (365)
T ss_dssp             TTTTEEEEEEECTTTC
T ss_pred             cCCCEEEEEEecCCCc
Confidence             688999999986544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.35  E-value=0.56  Score=46.17  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=39.6

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE---ccCCCEEEE
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF---SHYSQWIAI  448 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF---SpDg~~LAs  448 (787)
                      ...|+|+++|+++++...+++ |..|+.  .      |.        ...+.....+.  ...++++|   ++|++.|.+
T Consensus       210 pdgia~d~dG~l~va~~~~~~-V~~i~p--~------G~--------~~~~~~~~~~~--~~pt~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNS-VVRIAP--D------RS--------TTIIAQAEQGV--IGSTAVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCC-EEEECT--T------CC--------EEEEECGGGTC--TTEEEEEECCSTTTTTEEEE
T ss_pred             CcceEECCCCCEEEEEcCCCc-EEEECC--C------CC--------EEEEEecCCCC--CCceEEEEcCCCCCCCEEEE
Confidence            456999999998887776554 555653  1      31        01222222221  24789999   789998887


Q ss_pred             EeCCC
Q 003907          449 VSSKG  453 (787)
Q Consensus       449 ~S~dg  453 (787)
                      ++..+
T Consensus       271 tt~~g  275 (302)
T d2p4oa1         271 VTNGG  275 (302)
T ss_dssp             EECTT
T ss_pred             ECCCC
Confidence            76653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.16  E-value=0.73  Score=45.62  Aligned_cols=50  Identities=8%  Similarity=-0.112  Sum_probs=39.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN  223 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV~~~~~I~iwD~~T~e~  223 (787)
                      ++|.-||.++++. ..+.++..+.++.+.+ ..|.++..+.|+.+|..+++.
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~   90 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVL   90 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeeccccee
Confidence            5899999998865 4677888888888755 566677788999999999874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.68  E-value=1.3  Score=44.68  Aligned_cols=47  Identities=11%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECC
Q 003907          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDAL  219 (787)
Q Consensus       173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~  219 (787)
                      ++++++|+.+.+.++.+.++..|.-=+| +++.|+...++.||=|++.
T Consensus        83 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~  130 (327)
T d1utca2          83 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSME  130 (327)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESS
T ss_pred             CeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEccc
Confidence            5899999999999999999998755555 7799999999999999984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.056  Score=58.03  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=59.2

Q ss_pred             CceEEEEECCCCcEEEE--eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          348 AGIVVVKDFVTRAIISQ--FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~--~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      .|...|+|+.+++....  .......+....|||||+.||-... + .|.+.+...       +          ......
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~-nl~~~~~~~-------~----------~~~~lt  150 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-N-NIYYCAHVG-------K----------QAIRVV  150 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-T-EEEEESSSS-------S----------CCEEEE
T ss_pred             cccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec-c-eEEEEecCC-------C----------ceEEEe
Confidence            46788999988764332  2233455667899999999998875 3 466666532       1          011111


Q ss_pred             eccccc----------------ccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCCC
Q 003907          426 HRGITS----------------ATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFG  464 (787)
Q Consensus       426 ~rG~~~----------------a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~g  464 (787)
                      ..|...                ..=..+-|||||++||....| ..|..|.+..++
T Consensus       151 ~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~  206 (465)
T d1xfda1         151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (465)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc
Confidence            111110                001357799999999998754 446677665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.08  E-value=1.5  Score=41.82  Aligned_cols=94  Identities=12%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      +.|..+|.............-.....|+|+++|+++++... .+.|..++....      .          ..+.. ..+
T Consensus       161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~-~~~i~~~~~~~~------~----------~~~~~-~~~  222 (260)
T d1rwia_         161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGST------T----------STVLP-FTG  222 (260)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT-TTEEEEECTTCS------C----------CEECC-CCS
T ss_pred             ccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC-CCEEEEEeCCCC------e----------EEEEc-cCC
Confidence            34555555443322222234445578999999998887766 444555654210      0          11111 111


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g  464 (787)
                      .  ....+|+|++||+.+++-..++.|.  .+.+.+
T Consensus       223 ~--~~P~~i~~d~~g~l~vad~~~~rI~--~i~~~~  254 (260)
T d1rwia_         223 L--NTPLAVAVDSDRTVYVADRGNDRVV--KLTSLE  254 (260)
T ss_dssp             C--CCEEEEEECTTCCEEEEEGGGTEEE--EECCCG
T ss_pred             C--CCeEEEEEeCCCCEEEEECCCCEEE--EEeCCC
Confidence            1  2367899999999887777777555  455543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=1.3  Score=41.56  Aligned_cols=50  Identities=12%  Similarity=-0.050  Sum_probs=37.1

Q ss_pred             EEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCC----eEEEEECCCCce
Q 003907          174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLEN  223 (787)
Q Consensus       174 tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~T~e~  223 (787)
                      .|.|.|...+.....++....+.+-+++|  +.||.....    .+++.+..++..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~   75 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV   75 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce
Confidence            68888987666666667888899999998  788865432    478888777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.59  E-value=0.67  Score=45.10  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             eEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907          350 IVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (787)
Q Consensus       350 ~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG  428 (787)
                      .|.+++. .++....+. .+......++++++|.++++... ...+.+++..        |          ..+..+...
T Consensus        94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-~~~~~~~~~~--------g----------~~~~~~g~~  153 (279)
T d1q7fa_          94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-VMRVIIFDQN--------G----------NVLHKFGCS  153 (279)
T ss_dssp             EEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-TTEEEEECTT--------S----------CEEEEEECT
T ss_pred             ccccccc-cccceeecCCCcccccceeccccCCcEEEEeec-cceeeEeccC--------C----------ceeeccccc
Confidence            4444543 344444443 34456778999999998876655 4557777642        3          244554333


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                      ........+++.++|+.+++....++|++|+.+
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecC
Confidence            233458899999999999999999999999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.12  E-value=0.17  Score=48.12  Aligned_cols=85  Identities=9%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CC----EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GN----NINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-G~----~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l  422 (787)
                      +|.|.+.|+.+++. ..|..+...+...+|||||+.||-.+.. +.    .|.++++..       |           ..
T Consensus        20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-------g-----------~~   80 (281)
T d1k32a2          20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-------G-----------EI   80 (281)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-------T-----------EE
T ss_pred             CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC-------C-----------ce
Confidence            46788889998875 4677777888999999999999966432 21    244444422       1           11


Q ss_pred             EEEecc-----cccccEEEEEEccCCCEEEEEeC
Q 003907          423 YKLHRG-----ITSATIQDICFSHYSQWIAIVSS  451 (787)
Q Consensus       423 ~~l~rG-----~~~a~I~slaFSpDg~~LAs~S~  451 (787)
                      ..+...     .........+|+|||+.|+....
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            222110     00113567899999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.03  E-value=0.15  Score=50.60  Aligned_cols=98  Identities=17%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l  425 (787)
                      ..+++|..||....  ...+......+.+|+|+|||+++++...++. +.+|+....     .+        ....+...
T Consensus        46 ~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~-~~~~~~~~~-----~~--------~~~~~~~~  109 (302)
T d2p4oa1          46 HEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADS-IPVVSLVKS-----DG--------TVETLLTL  109 (302)
T ss_dssp             TTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTS-CEEEEEECT-----TS--------CEEEEEEC
T ss_pred             CCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCce-EEEEEeccc-----cc--------ceeecccc
Confidence            34667777775432  3345556678999999999999998877554 677765331     01        11222222


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (787)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~  462 (787)
                      .   ......++++.+||+++++.+.++.+..++...
T Consensus       110 ~---~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1         110 P---DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             T---TCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             C---CccccceeEEccCCCEEeeccccccceeeeccC
Confidence            1   123478999999999999988888777666553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.11  Score=55.49  Aligned_cols=97  Identities=10%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             CCCceEEEEECCCCcEEEEeccC---CCCeEEEEECCCCCEEEEEEcCC--------CEEEEEeCCCCcccCCCCCCccc
Q 003907          346 DNAGIVVVKDFVTRAIISQFKAH---TSPISALCFDPSGTLLVTASVYG--------NNINIFRIMPSCMRSGSGNHKYD  414 (787)
Q Consensus       346 ~~dG~V~IwDl~s~~~v~~~~aH---~~pIsaLaFSpdG~lLATaS~dG--------~~IrVWdi~~~~~~~~~g~~~~~  414 (787)
                      ..+|.|.+||+.+++....+..+   ...+....|||||++|+.+....        ..+.|+|+..       +     
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-------~-----  101 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------G-----  101 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------C-----
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-------C-----
Confidence            45788999999887754444432   34677889999999988775311        1366777753       2     


Q ss_pred             cCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907          415 WNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (787)
Q Consensus       415 ~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~  461 (787)
                            ....+.... ....++...|||||++||-..+ +.+.+.+..
T Consensus       102 ------~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~  142 (465)
T d1xfda1         102 ------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV  142 (465)
T ss_dssp             ------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred             ------ceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecC
Confidence                  111221111 1124666889999999998874 456666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.21  E-value=1.5  Score=43.57  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=61.9

Q ss_pred             CCceEEEEECCCCcEE------EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907          347 NAGIVVVKDFVTRAII------SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (787)
Q Consensus       347 ~dG~V~IwDl~s~~~v------~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~  419 (787)
                      ..+.|..||+.....+      ..+.+ +......|+++.+|++.++... +..|.+||-..       +          
T Consensus       196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-~g~I~~~dp~~-------g----------  257 (314)
T d1pjxa_         196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDG-------G----------  257 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTC-------B----------
T ss_pred             cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-CCEEEEEeCCC-------C----------
Confidence            4567777776543222      22222 2223467999999998887665 44588888531       1          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEeCCCCCCc
Q 003907          420 VHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGGD  466 (787)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~L-As~S~dgTVhIwdl~~~gg~  466 (787)
                      ..+..+.-  ......+|+|.||++.| ++.+.+++|..+++...|.+
T Consensus       258 ~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         258 QPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             SCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             EEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence            11222221  11357899999999855 55567788888888766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.03  E-value=0.45  Score=44.94  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             EECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-
Q 003907          376 CFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-  452 (787)
Q Consensus       376 aFSpd--G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-  452 (787)
                      ..|||  |+.+|-.+. |. |-+.|+..       |           ....|..+  ...+...+|||||++||-.+.+ 
T Consensus         5 ~~sPdi~G~~v~f~~~-~d-l~~~d~~~-------g-----------~~~~Lt~~--~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DD-LWEHDLKS-------G-----------STRKIVSN--LGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEET-TE-EEEEETTT-------C-----------CEEEEECS--SSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEeC-Cc-EEEEECCC-------C-----------CEEEEecC--CCcccCEEECCCCCEEEEEEeeC
Confidence            45788  999998776 53 66667742       2           22344332  2457889999999999976432 


Q ss_pred             ---CeEEEEeCCCCCCc
Q 003907          453 ---GTCHVFVLSPFGGD  466 (787)
Q Consensus       453 ---gTVhIwdl~~~gg~  466 (787)
                         ....||-+...++.
T Consensus        63 ~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          63 SSLNTADLYFYNGENGE   79 (281)
T ss_dssp             TTCCEEEEEEEETTTTE
T ss_pred             CCCCceEEEEEEecCCc
Confidence               23445555554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.33  E-value=18  Score=35.17  Aligned_cols=75  Identities=9%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE-EEEeccc-ccccEEEEEEccCCCEEEEE
Q 003907          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL-YKLHRGI-TSATIQDICFSHYSQWIAIV  449 (787)
Q Consensus       372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l-~~l~rG~-~~a~I~slaFSpDg~~LAs~  449 (787)
                      -+.|+|+|||+.|..+....+.|..||+...      +..       .... ....... ....-..|++..||++.++.
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~------g~~-------~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDD------GVT-------IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SSS-------EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCC------Cce-------eccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            4679999999977666655667889987532      210       0111 1110000 01125679999999988888


Q ss_pred             eCCCeEEEEe
Q 003907          450 SSKGTCHVFV  459 (787)
Q Consensus       450 S~dgTVhIwd  459 (787)
                      ...+.|.+|+
T Consensus       246 ~~~g~V~~~~  255 (319)
T d2dg1a1         246 YGQGRVLVFN  255 (319)
T ss_dssp             ETTTEEEEEC
T ss_pred             cCCCEEEEEC
Confidence            8899999887

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.42  E-value=12  Score=37.46  Aligned_cols=196  Identities=11%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (787)
Q Consensus       348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r  427 (787)
                      ..+++|+|+.+++.+..+.-. .+|..-.|=.+. .|+--.  ++.|-=|++.        |.      ....++++.+.
T Consensus        82 g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT--~taVYHW~~~--------g~------s~P~k~fdR~~  143 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT--DNAVYHWSME--------GE------SQPVKMFDRHS  143 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC--SSEEEEEESS--------SS------CCCEEEEECCG
T ss_pred             CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc--CCceEEEccc--------CC------CCchhhhhhcc
Confidence            347999999999887776554 467777775443 444333  3458889983        21      11244444332


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCCCccccccccCCCCCCcccCCCCCCccccCCCCCcCC
Q 003907          428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ  500 (787)
Q Consensus       428 G~~~a~I~slaFSpDg~~LAs~S~-------dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~  500 (787)
                      -..+..|..-.-++|.+|++..+-       .|.+.||.++.. ....+.+|...                     +.+.
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~---------------------F~~~  201 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS---------------------FAQF  201 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEE---------------------EEEE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeee---------------------eEEE
Confidence            223346888999999999876642       256788988753 34556677421                     1111


Q ss_pred             cCC-CCCceeecceeeEEecCCCccccccccccccCCccccccceeeeecccCcccccccccccc-CccccEEEEcCCcc
Q 003907          501 CVL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSGY  578 (787)
Q Consensus       501 ~~~-~p~~~~l~~v~~i~~~~~~w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~-~~~~~LlV~s~~G~  578 (787)
                      .++ .+.+..|-..+. |.. .+-.=.+-.-....++....|.. ..++|-..-+...-|+...+ ++-+=++|.|--|+
T Consensus       202 ~~~g~~~~~~lf~fa~-r~~-~~~kLhIiEig~~~~g~~~f~kk-~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~  278 (327)
T d1utca2         202 KMEGNAEESTLFCFAV-RGQ-AGGKLHIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  278 (327)
T ss_dssp             CCTTCSSCEEEEEEEE-EET-TEEEEEEEECSCCCTTCCCCCCE-EEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EcCCCCCCceEEEEEE-CCC-CCcEEEEEEcCCCccCCCCCcce-eEEEECCccccCCcEEEEEeeccCCEEEEEecCcE
Confidence            111 111222222211 111 11000000001111121123333 56788776665444432222 45566999999999


Q ss_pred             EEEEeccc
Q 003907          579 VVQHELLP  586 (787)
Q Consensus       579 l~~y~l~p  586 (787)
                      ++.|+|..
T Consensus       279 i~lyDleT  286 (327)
T d1utca2         279 IHLYDLET  286 (327)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEccc
Confidence            99999965

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.79  E-value=2.4  Score=42.00  Aligned_cols=95  Identities=13%  Similarity=0.046  Sum_probs=60.2

Q ss_pred             eEEEEECCCCcEEE--Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907          350 IVVVKDFVTRAIIS--QF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (787)
Q Consensus       350 ~V~IwDl~s~~~v~--~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~  426 (787)
                      .+.+||..+++...  .+ ..|..-..+.++.++|++++.++.+...+.+||....                  ...++.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~------------------~w~~~~  114 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------------------SWIPGP  114 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------------------EEEECC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC------------------cccccc
Confidence            46789998875322  22 2344445567899999999999887778999997541                  111110


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCC------CeEEEEeCCC
Q 003907          427 RGITSATIQDICFSHYSQWIAIVSSK------GTCHVFVLSP  462 (787)
Q Consensus       427 rG~~~a~I~slaFSpDg~~LAs~S~d------gTVhIwdl~~  462 (787)
                      .......--..+..+||+.++.++.+      .++.+||...
T Consensus       115 ~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         115 DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            00000011246778899999998753      3688888765