Citrus Sinensis ID: 003912

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQERLKIPETAKSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSCGAL
ccccHHHHcccccccHHHHHHcccccccHHHHccccHHHHHHHHHccccccHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccccccHHHccccccccccccccccccHHHHccccccccccccccccccccccccHHccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEccHHcccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEccccHHHHcccc
ccHHHHHHHccccHHHHHHHHHHHHHccHcHHHEccHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccHHccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEcccEEccHHHHHHHHccHHHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEHHHHHccccHHHHHHHHHHHHHHHcccEEEEEcccccccEEEcccccHHHHcccc
mfysrsllsrkgplGAIWVAAYCFKRLKKAQVFetnipssvDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNlgnlcapycsitlpesfeldafdleiledisgenavpleqitlkdgasaaagkghyslskycckeyaawddsfsgdyspaddifsSHLMEIGMVVSATYSNLNANMEnlqsnndggvtepiepvgekhqtneDMKAAETAQSEKRLEKLqdnsfhgveeesldpiklcgkdhrsdgeqtmvpDIAQLEKETCQATSKDINKNITMLQASTEklcehevpqvcsgvemcygskeelpkqvelsgeehhsntEQMKVMEISSrnnecqvmkredplsvtvdatpqskfldasgattpefmvvqtpatkecarisrkrkccfddvtvfpndvMRQCIQDASDLVSKRRKVPRTVLAAWKASrisnlsqgfllpllpcISLELRAFLCQERlkipetaksvellepelpTVHKSLEKMAItsgtpigrssqnmgiapntrtgislekmavapgtptgrssekmvvapetptggssekmvvapetptcrspekrafapdtptgrssekmavapatptgrssetmaiapdtltvkSSELIAMTiespiflsvpsrsfetpenahSIAVETLadsyatpkkdlasskdedfdlifmneesnfgevdrqesygfsARTRMVAKYLHRRFLCHKERREDEAIKllpllegrtvkETARIFYEILVLQTKGivnvkqddaygdilvvkapwwdqscgal
mfysrsllsrkgplgAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQdnsfhgveeesldpikLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVelsgeehhsnteqMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFldasgattpefmvvQTPAtkecarisrkrkcCFDDVTVFPNDVMRQCIQDasdlvskrrkvPRTVLAAWkasrisnlsqgfLLPLLPCISLELRAFLCQERLKIPetaksvellepeLPTVHKSLEKMAITsgtpigrssqnmgIAPNTRTGISLEKMAVApgtptgrssekmvvapetptggssekmvvapetptcrspekrafapdtptgrssekmavapatptgrssetmaiAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAVetladsyatpkkdlasskdEDFDLIFMNeesnfgevdrqesygfsARTRMVAKYLHRRFlchkerredeaikllpllegrtvkeTARIFYEILVLQTKGIVNVKQDDAYGDILVvkapwwdqscgal
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFllpllpCISLELRAFLCQERLKIPETAKSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSCGAL
***********GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNL***************************************************************************************************NITMLQASTEKLCEHEVPQVCSGVEMCY******************************************************************EFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQERLKIPETA*****************************************************************************************************************************************ELIAMTIESPIFLSV*************************************FDLIFMN****F**V***ESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQS****
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVS**********CAPYCSITLPESFELDAFDLEILEDISGE**********************************************************************************************************************************************************************NKN*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************MVAKYLH****************LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSCGA*
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEK****************KRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQERLKIPETAKSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVA**************************************PEKRAF************************SETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSCGAL
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGD******************************************************************************************************************************************************************************************************************************************ISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQER**************************************************************************************************************************************************************************************************************************FSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQ*CG*L
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MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQERLKIPETAKSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSCGAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query787 2.2.26 [Sep-21-2011]
Q9FQ20810 Sister chromatid cohesion yes no 0.921 0.895 0.329 8e-97
Q9FQ19693 Sister chromatid cohesion no no 0.155 0.176 0.463 6e-24
Q61550635 Double-strand-break repai yes no 0.259 0.321 0.325 2e-21
O60216631 Double-strand-break repai yes no 0.259 0.323 0.320 7e-21
Q3SWX9630 Double-strand-break repai yes no 0.259 0.323 0.320 1e-20
O93310629 Double-strand-break repai N/A no 0.179 0.224 0.412 5e-20
D2HSB3554 Double-strand-break repai no no 0.177 0.252 0.376 7e-20
A2AU37552 Double-strand-break repai no no 0.176 0.251 0.380 2e-18
P30776628 Cohesin subunit rad21 OS= yes no 0.109 0.136 0.465 3e-18
Q9H4I0556 Double-strand-break repai no no 0.177 0.251 0.366 3e-18
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 Back     alignment and function desciption
 Score =  355 bits (911), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 286/869 (32%), Positives = 422/869 (48%), Gaps = 144/869 (16%)

Query: 1   MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
           MFYS  L+SRKGPLGAIWVAAY FK+LKK+QV  T+IPSSVD+IL++ELD +TYRVLAYL
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 61  LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG-NLCAPY-C-SITLPESFEL 117
           LLG+VRIYSKKV++LFDDCN A++ +  F+  E++ +  G +L A   C SI LPE FEL
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120

Query: 118 DAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKE--YAAWDDSFSGDY 175
           DAFDL +LED  G N  P E ITLKDG+        YS+ ++  +E     + ++FS ++
Sbjct: 121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFSTNH 180

Query: 176 SPADDIFSSHLMEIGM-------------VVSA--------TYSNLNANMENLQSNNDGG 214
           +       +H ME+               VV A        +  + NA+       +D  
Sbjct: 181 NENKHESFAHDMELDAENVRDTTEEASVRVVEAEPLDSNEPSRDHQNASRHREDPESDDI 240

Query: 215 VTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDG 274
           + EP        Q +ED++ A+   + +        +   + +  +D  +  G +   DG
Sbjct: 241 LLEP--------QMSEDIRIAQEEDTVR-------ETICTIVQRLVDSHESSGDNLHRDG 285

Query: 275 EQTMVPDIAQLEKETCQATSKD--------INKNITMLQ----ASTEKLCEHEVPQVCS- 321
               +      +K +C+    D        I + I  ++     +T    E E+P++ + 
Sbjct: 286 HTENLESEKTSKKTSCEEMQHDRSLPSECGIPEAIHGIEDQPSGATRINGEKEIPEMSTL 345

Query: 322 ----------------GVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQV 365
                           GVE C    E      EL    H S+ EQ +  E++   +E   
Sbjct: 346 EKPEPVSVTGSRDLQEGVEKCRDHNEAEMADFELF---HGSHKEQSETSEVNLHGSEKGF 402

Query: 366 MK----REDPLS--------VTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKR 413
           +      +DP S        VTV     S+   + G T+P+F ++ TPA KE +R+SRKR
Sbjct: 403 LSDMTVSKDPSSEFNATDTPVTVTPKTPSRLKISEGGTSPQFSIIPTPAAKESSRVSRKR 462

Query: 414 KCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCI 473
           KC  DD  + PN VM++ I+D+S L++KRR VP T     +  R +N  + FL PL+   
Sbjct: 463 KCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHTDCPERRTKRFANPFRSFLEPLIQYG 522

Query: 474 SLELRAFLCQ-------------ERLKIPETAKSVELLEPELPTVHKSLEKMAITS---G 517
           S +L++  CQ             +  KI    +   L     P V  S ++   T     
Sbjct: 523 SSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKSSLDTVRSPGVILSSDQTENTQEIME 582

Query: 518 TPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPE 577
           TP   +   + +       +S+E  A +  + T   +E    A ETP   S    V+APE
Sbjct: 583 TPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTAHQTEN---AAETPVKPS----VIAPE 635

Query: 578 TPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRS-SETMAIAPDTLTVKSSELIAMTI 636
           TP  R+ E+   AP+TP    SE++ +AP TP   S S+     P T   KS        
Sbjct: 636 TP-VRTSEQTVIAPETPV--VSEQVEIAPETPVRESMSKRFFKDPGTCYKKSRP------ 686

Query: 637 ESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEES-NFGE 695
                 + P  SFE   + + +                   ++ D D I MN+E  N  E
Sbjct: 687 ------ASPFTSFEEHPSVYYV-------------------ENRDLDTILMNDEQVNADE 721

Query: 696 VDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVL 755
               +   +S+RTR VAK+L + FL  +ER E+E + LL L  GRT KE+AR+FYE LVL
Sbjct: 722 RQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVL 781

Query: 756 QTKGIVNVKQDDAYGDILVVKAPWWDQSC 784
           +TKG V VKQ+  Y D+ +++     ++C
Sbjct: 782 KTKGYVEVKQNHPYSDVFLMRVSRPQKAC 810
May be involved in sister chromatid cohesion during mitosis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 Back     alignment and function description
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 Back     alignment and function description
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 Back     alignment and function description
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 Back     alignment and function description
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 Back     alignment and function description
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1 Back     alignment and function description
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2 Back     alignment and function description
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 Back     alignment and function description
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query787
255536971781 Sister chromatid cohesion 1 protein, put 0.888 0.895 0.407 1e-149
224117528770 predicted protein [Populus trichocarpa] 0.935 0.955 0.409 1e-138
12006360809 cohesion family protein SYN2 [Arabidopsi 0.917 0.892 0.336 5e-97
30693677809 Sister chromatid cohesion 1 protein 2 [A 0.921 0.896 0.329 4e-96
297801484805 hypothetical protein ARALYDRAFT_493894 [ 0.914 0.894 0.337 4e-96
30693680810 Sister chromatid cohesion 1 protein 2 [A 0.921 0.895 0.329 5e-95
357503841853 Double-strand-break repair protein rad21 0.696 0.642 0.281 9e-49
449495347320 PREDICTED: uncharacterized protein LOC10 0.301 0.740 0.456 4e-48
10177963 901 unnamed protein product [Arabidopsis tha 0.194 0.169 0.621 1e-45
296090244621 unnamed protein product [Vitis vinifera] 0.308 0.391 0.392 1e-43
>gi|255536971|ref|XP_002509552.1| Sister chromatid cohesion 1 protein, putative [Ricinus communis] gi|223549451|gb|EEF50939.1| Sister chromatid cohesion 1 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/852 (40%), Positives = 462/852 (54%), Gaps = 153/852 (17%)

Query: 1   MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
           MFYS S LSRKGPLGAIWVAAYCFK+LKKAQV +T+I SSVD+IL++E D +TYRVLAYL
Sbjct: 1   MFYSHSFLSRKGPLGAIWVAAYCFKKLKKAQVTQTDIASSVDKILQDEFDAVTYRVLAYL 60

Query: 61  LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
           LLG+VRI+SKKVEYLFDDCN  ++KI +F+V  K    +  LCAPY SITLPE FELDAF
Sbjct: 61  LLGVVRIFSKKVEYLFDDCNKVLLKIKDFMVRNKERALMETLCAPYSSITLPERFELDAF 120

Query: 121 DLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSK-YCCKEYAAWDDSFSGDYSPAD 179
           +LEI+EDISG N VP E IT+KDG         YSL K Y  K       SF   Y    
Sbjct: 121 NLEIIEDISGGNVVPSEDITVKDGMWKTGAIVPYSLDKVYVIK-------SFYLTYC--- 170

Query: 180 DIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGV------------TEPIEPVGE--- 224
              +SH +          S+L A+ EN   N                  EP+ PV     
Sbjct: 171 ---TSHYL----------SSLEASTENYLDNEPNQCESMELEMFPMVEEEPLYPVQSFDE 217

Query: 225 ------KHQTNEDMKAAETAQSEKRLEKLQDNS-----------FHGVEEESLDPIKLCG 267
                 +H     + +++   +E  +++L  NS           F  VEEE  +  K  G
Sbjct: 218 YLHNKAEHTGAIQVVSSDEMHAELSMQELWGNSIFREAGLNLQIFGEVEEEPENSAKSFG 277

Query: 268 KDHRSDGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEVPQ-VCSGVEMC 326
           + H++DG+Q  VPD+ Q E E  +   +D   NI+ L+ S EKL E+ V Q  C  +EM 
Sbjct: 278 EHHQTDGKQIKVPDLTQAENENDEVIKEDC--NISNLEVSIEKLRENMVAQEECRDIEMF 335

Query: 327 YGSKE-------------------------ELPKQVELSGEEHHSNTEQMKVMEISS-RN 360
              +E                         ELP+     GEEH S+ E   +++++S RN
Sbjct: 336 CMVEEPPEENRSIPDKHKSNTEHKMLYRVDELPEDTRPFGEEHQSSAEHETLLQMTSPRN 395

Query: 361 NECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDV 420
           +  + +  + PLSVT+D TP+ +F +ASGA TPE  V+ TPA KE AR+ RKRKC FDD 
Sbjct: 396 STYEALTEDHPLSVTLDTTPRPRFPNASGAMTPEISVIPTPAAKEGARVPRKRKCVFDDT 455

Query: 421 TVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAF 480
            VFPN+V++QCI+D+SDLVSKR+K P T L AW+ASR+S L + FL  L+PC + +LR+ 
Sbjct: 456 IVFPNNVIKQCIEDSSDLVSKRKKAPHTALTAWRASRVSRLPRCFLESLIPCTASDLRSL 515

Query: 481 LCQERLKIPETAKSVEL---LEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTR--- 534
           L  ++LKI E+  +V +      E PT  +S+E   + S   + +S     I  + R   
Sbjct: 516 LSGKKLKISESLDTVRVPQTFTSECPTARRSVE--TVESPEKLDKSK----ILVDGRLVE 569

Query: 535 TGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTC-RSPEKRAFAPDT 593
           T  SLEK+ V+      R  +   V P    G S        E+PT  RS E+   AP+T
Sbjct: 570 TMDSLEKLNVSASPAVDRQGK--TVEPRATLGMS--------ESPTAIRSLEQERIAPET 619

Query: 594 PTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPE 653
           P                                             I  +   R+FE+PE
Sbjct: 620 P---------------------------------------------ILHTKSLRTFESPE 634

Query: 654 NAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAK 713
                 ++ +       +K+L+ SK  + DL  MNEE +  E D Q  YG+S RTR+  +
Sbjct: 635 RPEISNLDRVRLESERVEKELSPSKGHELDLNMMNEEISSDEGDNQNQYGWSGRTRVAVR 694

Query: 714 YLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
            LHR FL  K RRE+E + LL LLEGR  KE+AR+FYEILVL++KG V+VKQ++AYGDIL
Sbjct: 695 CLHRSFLKQKNRREEEVVNLLSLLEGRAKKESARLFYEILVLKSKGYVHVKQENAYGDIL 754

Query: 774 VVKAPWWDQSCG 785
           V KA  W Q+C 
Sbjct: 755 VWKASQWGQACS 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117528|ref|XP_002331697.1| predicted protein [Populus trichocarpa] gi|222874175|gb|EEF11306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|12006360|gb|AAG44842.1|AF281154_1 cohesion family protein SYN2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30693677|ref|NP_851110.1| Sister chromatid cohesion 1 protein 2 [Arabidopsis thaliana] gi|18157645|gb|AAL62058.1|AF400127_1 RAD21-1 variant 2 [Arabidopsis thaliana] gi|332007219|gb|AED94602.1| Sister chromatid cohesion 1 protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297801484|ref|XP_002868626.1| hypothetical protein ARALYDRAFT_493894 [Arabidopsis lyrata subsp. lyrata] gi|297314462|gb|EFH44885.1| hypothetical protein ARALYDRAFT_493894 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30693680|ref|NP_568586.2| Sister chromatid cohesion 1 protein 2 [Arabidopsis thaliana] gi|30913286|sp|Q9FQ20.2|SCC12_ARATH RecName: Full=Sister chromatid cohesion 1 protein 2; AltName: Full=SCC1 homolog 2; Short=AtRAD21-1 gi|18157643|gb|AAL62057.1|AF400126_1 RAD21-1 variant 1 [Arabidopsis thaliana] gi|332007220|gb|AED94603.1| Sister chromatid cohesion 1 protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357503841|ref|XP_003622209.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|355497224|gb|AES78427.1| Double-strand-break repair protein rad21-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449495347|ref|XP_004159806.1| PREDICTED: uncharacterized protein LOC101227114 [Cucumis sativus] Back     alignment and taxonomy information
>gi|10177963|dbj|BAB11346.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296090244|emb|CBI40063.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query787
TAIR|locus:2164501810 SYN2 [Arabidopsis thaliana (ta 0.412 0.401 0.369 2.2e-71
TAIR|locus:2181457 1031 SYN4 "sister chromatid cohesio 0.421 0.322 0.301 8.5e-34
TAIR|locus:2097548693 SYN3 "AT3G59550" [Arabidopsis 0.180 0.204 0.441 2e-28
ZFIN|ZDB-GENE-030131-994643 rad21a "RAD21 homolog (S. pomb 0.175 0.214 0.421 1.6e-27
UNIPROTKB|O60216631 RAD21 "Double-strand-break rep 0.246 0.307 0.368 4e-27
MGI|MGI:108016635 Rad21 "RAD21 homolog (S. pombe 0.254 0.314 0.330 4.6e-27
UNIPROTKB|Q3SWX9630 RAD21 "Double-strand-break rep 0.176 0.220 0.397 9.7e-27
RGD|1594529635 Rad21 "RAD21 homolog (S. pombe 0.246 0.305 0.364 9.9e-27
ZFIN|ZDB-GENE-060503-223637 rad21b "RAD21 homolog (S. pomb 0.175 0.216 0.421 1e-26
UNIPROTKB|E2QRU9631 RAD21 "Uncharacterized protein 0.246 0.307 0.364 1.2e-26
TAIR|locus:2164501 SYN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 499 (180.7 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
 Identities = 131/355 (36%), Positives = 200/355 (56%)

Query:     1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
             MFYS  L+SRKGPLGAIWVAAY FK+LKK+QV  T+IPSSVD+IL++ELD +TYRVLAYL
Sbjct:     1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query:    61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG-NLCAPY-C-SITLPESFEL 117
             LLG+VRIYSKKV++LFDDCN A++ +  F+  E++ +  G +L A   C SI LPE FEL
Sbjct:    61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120

Query:   118 DAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKE--YAAWDDSFSGDY 175
             DAFDL +LED  G N  P E ITLKDG+        YS+ ++  +E     + ++FS ++
Sbjct:   121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFSTNH 180

Query:   176 SPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAA 235
             +       +H ME+             + EN++   +      +E   E   +NE  +  
Sbjct:   181 NENKHESFAHDMEL-------------DAENVRDTTEEASVRVVE--AEPLDSNEPSRDH 225

Query:   236 ETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGK-DHRSDGEQTMVPDIAQLEKETCQATS 294
             + A S  R +   D+    +E +  + I++  + D   +   T+V  +    + +     
Sbjct:   226 QNA-SRHREDPESDDIL--LEPQMSEDIRIAQEEDTVRETICTIVQRLVDSHESSGDNLH 282

Query:   295 KDIN-KNITMLQASTEKLCE---HE--VPQVCSGVEMCYGSKEELPKQVELSGEE 343
             +D + +N+   + S +  CE   H+  +P  C   E  +G +++      ++GE+
Sbjct:   283 RDGHTENLESEKTSKKTSCEEMQHDRSLPSECGIPEAIHGIEDQPSGATRINGEK 337
GO:0000228 "nuclear chromosome" evidence=IEA
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0000798 "nuclear cohesin complex" evidence=ISS
GO:0007067 "mitosis" evidence=IEP;RCA
GO:0006302 "double-strand break repair" evidence=RCA;IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-994 rad21a "RAD21 homolog (S. pombe) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108016 Rad21 "RAD21 homolog (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1594529 Rad21 "RAD21 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FQ20SCC12_ARATHNo assigned EC number0.32910.92120.8950yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query787
pfam04825110 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec 3e-35
pfam0482455 pfam04824, Rad21_Rec8, Conserved region of Rad21 / 2e-09
>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein Back     alignment and domain information 
 Score =  128 bits (325), Expect = 3e-35
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)

Query: 1   MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
           MFYS  LL++KGPL  +W+AA   K+L + Q+ E +IP S +EIL  E   +  R+   L
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAP-IALRLSGQL 59

Query: 61  LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLP 112
           L G+VRIYS+KVEYL +DCN+A+ ++         + +L    A   ++TLP
Sbjct: 60  LYGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQL-DLPERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110
>gnl|CDD|113590 pfam04824, Rad21_Rec8, Conserved region of Rad21 / Rec8 like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 787
KOG1213614 consensus Sister chromatid cohesion complex Cohesi 100.0
PF04825111 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot 100.0
PF0482455 Rad21_Rec8: Conserved region of Rad21 / Rec8 like 99.67
PF02616242 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 Thi 95.92
PRK00104242 scpA segregation and condensation protein A; Revie 94.74
COG1354248 scpA Rec8/ScpA/Scc1-like protein (kleisin family) 91.24
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-59  Score=525.25  Aligned_cols=122  Identities=52%  Similarity=0.783  Sum_probs=118.5

Q ss_pred             CCccchhhccCCchhhhHHhhhcCCCCCchhhccCChHHHHHHHhccCCCcchhhhhhhhccceEEEEecchhHHHhhHH
Q 003912            1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCN   80 (787)
Q Consensus         1 MFYS~~LLskkGpLa~IWLAAt~~kKLsKkqIl~~dI~~s~~~Il~p~~p~iALRLSG~LLlGVVRIYsrKv~YLl~Dcn   80 (787)
                      |||||.||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+| ||||||||||+||||||||||+|||+|||
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~-lALRtSghLLlGVVRIYSrK~~YLl~Dcn   79 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVP-LALRTSGHLLLGVVRIYSRKVKYLLDDCN   79 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccc-eehhhhcccceeeEEeehhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 99999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccCCCCCCCCCcccccCCCccCCccChh
Q 003912           81 DAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAFDLE  123 (787)
Q Consensus        81 ~al~kIk~~f~~~~~dlp~~~~~A~~~aITLPd~f~ld~~Dl~  123 (787)
                      ++|.|||++|+.+++++|.........+||||++|+++++|+.
T Consensus        80 eal~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~  122 (614)
T KOG1213|consen   80 EALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLP  122 (614)
T ss_pred             HHHHHHHHHhccccccCCCcccccccccccchhhhcccccccc
Confidence            9999999999999999999888888899999999998888876

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families Back     alignment and domain information
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ] Back     alignment and domain information
>PRK00104 scpA segregation and condensation protein A; Reviewed Back     alignment and domain information
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query787
1w1w_E121 SCC1, sister chromatid cohesion protein 1; cohesin 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Length = 121 Back     alignment and structure
 Score = 65.5 bits (159), Expect = 5e-13
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 674 LASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIK- 732
                  D             +V        S     +AK L +     KE    + +K 
Sbjct: 8   FPEENIIDAKTRNEQTTIQTEKVRPTPGEVASKAIVQMAKILRKELSEEKEVIFTDVLKS 67

Query: 733 -LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
                 E  T +E +R F++IL L T+G + + Q +A+G+I +   P
Sbjct: 68  QANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query787
1w1w_E121 SCC1, sister chromatid cohesion protein 1; cohesin 99.89
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Back     alignment and structure
Probab=99.89  E-value=2.9e-24  Score=200.03  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=64.5

Q ss_pred             ccccccCCCcHHHHHHHHHHHHHhccccccccccccchhhhhc--------cchHHHHHHHHHHHHhhccCCceeecccC
Q 003912          696 VDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLE--------GRTVKETARIFYEILVLQTKGIVNVKQDD  767 (787)
Q Consensus       696 ~~~~~~~~wS~rTr~vA~~L~~~f~~~~~~~~~~~vsl~~lL~--------g~TRKeAAr~FfE~LVLkT~g~IdV~Q~e  767 (787)
                      ....++.+||+||++||++||..|...      ++++|++||+        |+|||+|||+|||+|||||+|||+|+|++
T Consensus        30 v~~~~~~~~Sk~T~~v~~~Lr~~f~~~------~~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ~e  103 (121)
T 1w1w_E           30 VRPTPGEVASKAIVQMAKILRKELSEE------KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTE  103 (121)
T ss_dssp             ----------CHHHHHHHHHHHHTTSC------SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECS
T ss_pred             eeeccCCcccHHHHHHHHHHHHHhCCC------CCccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEecCC
Confidence            444567799999999999999999884      7899999985        89999999999999999999999999999


Q ss_pred             CCcCeEEecCccHhhhh
Q 003912          768 AYGDILVVKAPWWDQSC  784 (787)
Q Consensus       768 pYgDI~I~~~p~L~~~~  784 (787)
                      |||||.|+++|+|-..|
T Consensus       104 pyGdI~I~~~p~L~~~f  120 (121)
T 1w1w_E          104 AFGNIKIDAKPALFERF  120 (121)
T ss_dssp             TTCCEEEEECGGGC---
T ss_pred             CCCceEEeeCchhhhhc
Confidence            99999999999985443

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 787
d1w1we_79 a.4.5.57 (E:) Sister chromatid cohesion protein 1 1e-09
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 707 RTRMVAKYLHRRFLCHKERREDEAIKL--LPLLEGRTVKETARIFYEILVLQTKGIVNVK 764
               +AK L +     KE    + +K       E  T +E +R F++IL L T+G + + 
Sbjct: 2   AIVQMAKILRKELSEEKEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLS 61

Query: 765 QDDAYGDILVVKAP 778
           Q +A+G+I +   P
Sbjct: 62  QTEAFGNIKIDAKP 75

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query787
d1w1we_79 Sister chromatid cohesion protein 1 (SCC1), C-term 99.77
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.9e-20  Score=158.05  Aligned_cols=70  Identities=26%  Similarity=0.406  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhccccccccccccchhhhhc--------cchHHHHHHHHHHHHhhccCCceeecccCCCcCeEEecC
Q 003912          706 ARTRMVAKYLHRRFLCHKERREDEAIKLLPLLE--------GRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKA  777 (787)
Q Consensus       706 ~rTr~vA~~L~~~f~~~~~~~~~~~vsl~~lL~--------g~TRKeAAr~FfE~LVLkT~g~IdV~Q~epYgDI~I~~~  777 (787)
                      |+|.+||+.||+.|.+.      +.+.|+++|.        +.|||+||++||++|||||+|||+|+|++|||||.|+++
T Consensus         1 K~t~q~a~~Lr~el~~~------~~v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~   74 (79)
T d1w1we_           1 KAIVQMAKILRKELSEE------KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAK   74 (79)
T ss_dssp             CHHHHHHHHHHHHTTSC------SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEEC
T ss_pred             ChHHHHHHHHHHHHccc------CceehhhhhhhhhcccccCCCHHHHHHHHHHHHHHccCCeEEEEcCCCcCceEEeeC
Confidence            58999999999999875      7899999986        789999999999999999999999999999999999999


Q ss_pred             ccHh
Q 003912          778 PWWD  781 (787)
Q Consensus       778 p~L~  781 (787)
                      |+|-
T Consensus        75 p~l~   78 (79)
T d1w1we_          75 PALF   78 (79)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            9984