Citrus Sinensis ID: 003928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780------
MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKPGRKKKGLNRKAKKESFGFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFGSNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDNCLDSTALLSGKSGLKRRSEKEEHRSEKYAKHVMADDISKGKNKKKNKKNQVASEYAGPSSKGAEIAAKPFLSTDKTVKKRNRSNRPSKASKKLKP
cccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHccccccccHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHccccccccccccccc
ccEEcccccHHHHHHHHcHHHHHHcccccccccccHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHcccccccccHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHEEccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccHHHHcHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHccccccccccccccccc
mvavglkglpssrQRLCDLvedslmggddksykpgrkkkglnrkakkesfgfdadnsnknssghgadgsasarkswkhqnasdpktsvvRKQVDPDLAKYFAEISNLfesnevdleERSVLCRNALEETRGKELELATDYIISHTLQTLlegcdvdhlcsflrgcakvfpaiamdrsgsHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLcrgapldssdfhrakpSQILAERLnldasqsnrnnlsyhhpVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLgsnkdnvvegnfiPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNslfdlsshhcANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVsstnvsprcivpgilflesyfscedksnwnwpkgikIQIIGSLILQAvfrfpsefiqpyvtSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKghfgelsvhpsgsftvercftasSLSLRETIASELSAVRNElsktkqgphlirkldidgftarpdqwRLKQSAKQLTYKEFYStfgsndtkssrkdsfladsskqtsnsQGIKNMRKEIDNCldstallsgksglkrrsekeehRSEKYAKHVMaddiskgknkkknkknqvaseyagpsskgaeiaakpflstdktvkkrnrsnrpskaskklkp
mvavglkglpssrqrLCDLvedslmggddksykpgrkkkglnrkakkesfgfdadnsnknssghGADGSASARKSWKhqnasdpktsvvrKQVDPDLAKYFAEISNLfesnevdleerSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAaavsstnvspRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLsskvsakqkHRVVLKLKGHFgelsvhpsgsftVERCFTASSLSLRETIASELSAVRnelsktkqgphlirkLDIDGFTARPDQWRLKQSAKQLTYKEFYStfgsndtkssrkdsfladsskqtsnsqgiKNMRKEIDNCldstallsgksglkrrsekeehrsekyakhvmaddiskgknkkknkknqvaseyagpsskgaeiaakpflstdktvkkrnrsnrpskaskklkp
MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKPgrkkkglnrkakkESFGFDADNSNKNssghgadgsasaRKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFGSNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDNCLDSTALLSGKSGLkrrsekeehrsekYAKHVMADDISkgknkkknkknQVASEYAGPSSKGAEIAAKPFLSTDKTVKKRNRSNRPSKASKKLKP
***********************************************************************************************DLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPL*****************************LSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETI******************HLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYST************************************************************************************************************************************
*************************************************************************************************AKYFAEISNLFES**VDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTA**********************************************************************************************************************************************************
MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKP***********KKESFGFDADNSN*******************************RKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFG*************************IKNMRKEIDNCLDSTALLSGK*****************AKHVMADDIS***********************GAEIAAKPFLSTDK********************
***************************************************************************************VVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAP*********************************HHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDN***GNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSC***********IKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFG**********************************************************************************************************************************
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MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKPGRKKKGLNRKAKKESFGFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFGSNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDNCLDSTALLSGKSGLKRRSEKEEHRSEKYAKHVMADDISKGKNKKKNKKNQVASEYAGPSSKGAEIAAKPFLSTDKTVKKRNRSNRPSKASKKLKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query786 2.2.26 [Sep-21-2011]
Q9C552753 Pumilio homolog 23 OS=Ara yes no 0.945 0.986 0.560 0.0
A8P7F7796 Nucleolar protein 9 OS=Co N/A no 0.694 0.685 0.249 2e-32
Q86U38636 Nucleolar protein 9 OS=Ho yes no 0.695 0.860 0.250 5e-27
Q8BMC4636 Nucleolar protein 9 OS=Mu yes no 0.673 0.831 0.257 1e-26
Q5B3J5699 Nucleolar protein 9 OS=Em yes no 0.695 0.782 0.217 1e-21
C5P9D1722 Nucleolar protein 9 OS=Co N/A no 0.666 0.725 0.238 4e-20
A1D6V7699 Nucleolar protein 9 OS=Ne N/A no 0.670 0.753 0.236 2e-18
C5G8V2682 Nucleolar protein 9 OS=Aj N/A no 0.661 0.762 0.221 4e-18
Q6C9H2724 Nucleolar protein 9 OS=Ya yes no 0.657 0.714 0.212 4e-18
Q2UKV0707 Nucleolar protein 9 OS=As yes no 0.678 0.753 0.222 1e-17
>sp|Q9C552|PUM23_ARATH Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1 Back     alignment and function desciption
 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/776 (56%), Positives = 566/776 (72%), Gaps = 33/776 (4%)

Query: 1   MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKP-GRKKKGLNRKAKKESFGFDADNSNK 59
           MV+VG K LPS R R  +  EDSLMG   KS      + KG+ RK  K + GFD D+S K
Sbjct: 1   MVSVGSKSLPSRRHRTIE--EDSLMGERGKSSNNHSERNKGMRRKDHKGNRGFDVDSSKK 58

Query: 60  NSSGHGADGSASARK--SWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEE 117
           N SG   +   +++K   ++HQN        VRK++DP+ +KYF+EI+NLF+SNEV+LEE
Sbjct: 59  NQSGGAPNVKPASKKHSEFEHQN------QFVRKEIDPETSKYFSEIANLFDSNEVELEE 112

Query: 118 RSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRS 177
           RSV+C NALEETRG+E E+ATDYIISH LQTLLEGC++D LCSF+R  A VFPAIAMDRS
Sbjct: 113 RSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRS 172

Query: 178 GSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLC 237
           GSHVAE+ALKSLA HL++  A+S+IEE L SICKVIV NP+D+MCNCYGSHVLR LLCLC
Sbjct: 173 GSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHVLRRLLCLC 232

Query: 238 RGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKD 297
           +G  LDS + + AK S+ LA+RLNL  SQ + NNL   H  F  +  +L+SG+L+ SR+D
Sbjct: 233 KGVSLDSPELYGAKSSKALAKRLNLKMSQLDDNNLEIPHQGFPGMLTYLLSGLLSCSRED 292

Query: 298 LRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNV-VEGNFIPMTVVHDVLN 356
           ++ LQ DQYSSLVLQTALRL++  D +LL+II ++L  N  N  VEG  I   V  ++L 
Sbjct: 293 MKYLQVDQYSSLVLQTALRLMLKQDEQLLEIIPLILRCNSTNKKVEGFHIETNVAKEILE 352

Query: 357 LMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQ 416
            MK+ ++SHL+EVILEVAP+SLY+EMF KVF+NSLF+LS   CANFV+QAL+SHARDQ+Q
Sbjct: 353 SMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALISHARDQEQ 412

Query: 417 MALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIV 476
           M ++WEEL  +F++LLE G+SGVVA+LIA SQRL +HE KCCEAL  AV STN S   I+
Sbjct: 413 MGIMWEELAPRFKDLLEQGKSGVVASLIAVSQRLQSHENKCCEALVGAVCSTNESRISIL 472

Query: 477 PGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHV 536
           P +LFL+ YF C DKS W W  G K+ ++G LILQ +F+F S+ IQPY+TS+TSM+A+++
Sbjct: 473 PRLLFLDYYFGCRDKSTWEWAPGAKMHVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYI 532

Query: 537 LEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLS 596
            E AKD++GARVIEA+L+S  + KQK R+++KL+GHFGELS+H SGSFTVE+CF A +L+
Sbjct: 533 TETAKDSSGARVIEAFLASDAATKQKRRLIIKLRGHFGELSLHTSGSFTVEKCFDACNLT 592

Query: 597 LRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFG 656
           LRE IASEL  V+ +LSKTKQGP+L+RKLDIDG+ +RPDQW+ +Q AKQ TY EF S FG
Sbjct: 593 LREAIASELLDVKVDLSKTKQGPYLLRKLDIDGYASRPDQWKSRQEAKQSTYNEFCSAFG 652

Query: 657 SNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDNCLDSTALLSGKSGLKRRSEKEEHRS 716
           SN +    K++F++D+S+  +    +KN RKEID+           SG KR      HR 
Sbjct: 653 SNKSNFP-KNTFVSDASEDAAQEIEVKNTRKEIDH--------HPTSGFKR------HR- 696

Query: 717 EKYAKHVMADDISKGKNKKKNKKNQVASEYAGPSSKGAEIAAKPFLSTDKTVKKRN 772
           EK+AK    D+   G+ + K KKN+ +     P   G++   +PFLS + T K R+
Sbjct: 697 EKHAKD--KDEPFAGEKRSKQKKNKTSEATDKPKLAGSK---RPFLSGEMTGKNRH 747
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs.
Arabidopsis thaliana (taxid: 3702)
>sp|A8P7F7|NOP9_COPC7 Nucleolar protein 9 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=NOP9 PE=3 SV=1 Back     alignment and function description
>sp|Q86U38|NOP9_HUMAN Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1 Back     alignment and function description
>sp|Q8BMC4|NOP9_MOUSE Nucleolar protein 9 OS=Mus musculus GN=Nop9 PE=2 SV=1 Back     alignment and function description
>sp|Q5B3J5|NOP9_EMENI Nucleolar protein 9 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nop9 PE=3 SV=2 Back     alignment and function description
>sp|C5P9D1|NOP9_COCP7 Nucleolar protein 9 OS=Coccidioides posadasii (strain C735) GN=NOP9 PE=3 SV=2 Back     alignment and function description
>sp|A1D6V7|NOP9_NEOFI Nucleolar protein 9 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nop9 PE=3 SV=1 Back     alignment and function description
>sp|C5G8V2|NOP9_AJEDR Nucleolar protein 9 OS=Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) GN=NOP9 PE=3 SV=1 Back     alignment and function description
>sp|Q6C9H2|NOP9_YARLI Nucleolar protein 9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOP9 PE=3 SV=1 Back     alignment and function description
>sp|Q2UKV0|NOP9_ASPOR Nucleolar protein 9 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nop9 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
224071021765 predicted protein [Populus trichocarpa] 0.960 0.986 0.647 0.0
225441973857 PREDICTED: pumilio homolog 23-like [Viti 0.979 0.898 0.620 0.0
297742925755 unnamed protein product [Vitis vinifera] 0.956 0.996 0.622 0.0
147855455 1694 hypothetical protein VITISV_027501 [Viti 0.949 0.440 0.612 0.0
449447962756 PREDICTED: pumilio homolog 23-like [Cucu 0.946 0.984 0.588 0.0
255586337663 Protein C14orf21, putative [Ricinus comm 0.835 0.990 0.607 0.0
297841975753 APUM23 [Arabidopsis lyrata subsp. lyrata 0.947 0.989 0.558 0.0
15218430753 pumilio 23 [Arabidopsis thaliana] gi|752 0.945 0.986 0.560 0.0
42570248731 pumilio 23 [Arabidopsis thaliana] gi|425 0.902 0.969 0.564 0.0
356506124745 PREDICTED: pumilio homolog 23-like [Glyc 0.937 0.989 0.539 0.0
>gi|224071021|ref|XP_002303333.1| predicted protein [Populus trichocarpa] gi|222840765|gb|EEE78312.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/789 (64%), Positives = 608/789 (77%), Gaps = 34/789 (4%)

Query: 1   MVAVGLKGLPSSRQR-LCDLVEDSLMGGDDKSYKPGRKKKGLNRKAKKESFGFDADNSNK 59
           MV+VG K L S R R  C+LVED+LMG +DKSY  GRKKKG++RKAK  SFGFDADNSNK
Sbjct: 1   MVSVGSKALASRRDRSCCNLVEDNLMGREDKSYNQGRKKKGMSRKAKNGSFGFDADNSNK 60

Query: 60  NSSGHGADGSASARKSWKHQNA-SDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEER 118
           + SG   DG+A  +KS K+QN  S+P+ S+V    DP+  KYF+EI NLFES+ VDLEER
Sbjct: 61  SVSGRATDGTAKPKKSSKYQNTFSEPQPSIV----DPETTKYFSEIVNLFESDGVDLEER 116

Query: 119 SVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSG 178
            V+C NALEE RGKE ELATDY ISHTLQ LLEGC+VDHLC FLRGCAKVFP I+MDRSG
Sbjct: 117 PVICGNALEEARGKEFELATDYYISHTLQILLEGCNVDHLCDFLRGCAKVFPLISMDRSG 176

Query: 179 SHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCR 238
           SHVAETALKSLAMHLQD+ A+S+IEETL +ICKVIVA+PVD+MCNCYGSHV RSLLCLC 
Sbjct: 177 SHVAETALKSLAMHLQDDEAYSVIEETLTNICKVIVASPVDMMCNCYGSHVFRSLLCLCG 236

Query: 239 GAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDL 298
           G PLDS  FHRAKPS ILAERLNL  S +  NNLS+HH  F  L KFL+SG+L  S +D+
Sbjct: 237 GVPLDSPVFHRAKPSMILAERLNLSTSSAPGNNLSHHHQGFPGLLKFLVSGMLKCSEEDV 296

Query: 299 RTLQTDQYSSLVLQ----TALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDV 354
           + L  DQYSSLV Q    TAL+L  G+D +LLQII +LL   K+N+ EGNFI MT V D+
Sbjct: 297 KYLLVDQYSSLVFQACWKTALKLFAGHDQQLLQIIPVLLDCRKENLTEGNFIEMTAVGDI 356

Query: 355 LNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQ 414
           + LMKE AYSHLMEVIL V+P+SLYDEMFTK+FR SLF+LSSHHC NFVVQALVSHARD+
Sbjct: 357 VKLMKEAAYSHLMEVILAVSPESLYDEMFTKIFRKSLFELSSHHCGNFVVQALVSHARDR 416

Query: 415 DQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRC 474
           +QM  IWE+LG KFR+LLEMG+SGV+A+LIA SQRLHTHE + C+ALA AV   N SPR 
Sbjct: 417 EQMEFIWEKLGPKFRDLLEMGKSGVIASLIATSQRLHTHEHEVCKALADAVCLPNESPRS 476

Query: 475 IVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEAD 534
           +V  ILFLESYF+C +KSNW WP G KI ++GSLILQAVF+F ++ IQPY+ S+TSME D
Sbjct: 477 VVDRILFLESYFACVEKSNWKWPSGAKIHVMGSLILQAVFKFQNQLIQPYIMSLTSMEVD 536

Query: 535 HVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASS 594
           HVLEAAKD  GAR IEA+L S  S KQKHR++ KL+GHFGEL++H SGSFTVE+CF+AS+
Sbjct: 537 HVLEAAKDVGGARTIEAFLDSDASGKQKHRLINKLRGHFGELAMHSSGSFTVEKCFSASN 596

Query: 595 LSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYST 654
           LSLRE IAS+L +V++EL KTKQGP+L+RKLDIDG+  RPDQWR +Q++KQ TYKEFY+ 
Sbjct: 597 LSLREAIASDLLSVQSELPKTKQGPYLLRKLDIDGYANRPDQWRSRQASKQSTYKEFYAA 656

Query: 655 FGSNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDNCLDSTALLSGKSGLKRRSEKEEH 714
           FGS + KSS+ DSFLAD+SK TS + G+KN+RKEID+ L S                   
Sbjct: 657 FGSGEVKSSKSDSFLADTSKSTSLAIGVKNVRKEIDHHLAS------------------- 697

Query: 715 RSEKYAKHVMADDISKGKNKKKNKKNQVASEYAGPSSKGAEIAAKPFLSTDKTVKKRNRS 774
            SEKYAKH + DD+ K KNKK  K +  AS+     S    +  KPFLS D    KR+  
Sbjct: 698 -SEKYAKHAVVDDVMKVKNKKHEKGHGGASDEKATVS----VNQKPFLSVDLKKNKRHGQ 752

Query: 775 NRPSKASKK 783
              SKAS+K
Sbjct: 753 EERSKASRK 761

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441973|ref|XP_002271118.1| PREDICTED: pumilio homolog 23-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742925|emb|CBI35792.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147855455|emb|CAN79607.1| hypothetical protein VITISV_027501 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449447962|ref|XP_004141735.1| PREDICTED: pumilio homolog 23-like [Cucumis sativus] gi|449491830|ref|XP_004159015.1| PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255586337|ref|XP_002533819.1| Protein C14orf21, putative [Ricinus communis] gi|223526256|gb|EEF28572.1| Protein C14orf21, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297841975|ref|XP_002888869.1| APUM23 [Arabidopsis lyrata subsp. lyrata] gi|297334710|gb|EFH65128.1| APUM23 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218430|ref|NP_177376.1| pumilio 23 [Arabidopsis thaliana] gi|75268148|sp|Q9C552.1|PUM23_ARATH RecName: Full=Pumilio homolog 23; Short=APUM-23; Short=AtPUM23 gi|12323652|gb|AAG51785.1|AC067754_1 unknown protein; 96525-92929 [Arabidopsis thaliana] gi|12325275|gb|AAG52582.1|AC016529_13 putative RNA-binding domain; 80649-84245 [Arabidopsis thaliana] gi|14334736|gb|AAK59546.1| putative RNA-binding domain protein [Arabidopsis thaliana] gi|15293279|gb|AAK93750.1| putative RNA-binding domain protein [Arabidopsis thaliana] gi|332197182|gb|AEE35303.1| pumilio 23 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42570248|ref|NP_849878.2| pumilio 23 [Arabidopsis thaliana] gi|42572079|ref|NP_974130.1| pumilio 23 [Arabidopsis thaliana] gi|332197181|gb|AEE35302.1| pumilio 23 [Arabidopsis thaliana] gi|332197183|gb|AEE35304.1| pumilio 23 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356506124|ref|XP_003521837.1| PREDICTED: pumilio homolog 23-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
TAIR|locus:2193982753 PUM23 "pumilio 23" [Arabidopsi 0.867 0.905 0.579 2.1e-213
MGI|MGI:1915092636 Nop9 "NOP9 nucleolar protein" 0.674 0.833 0.264 1.5e-35
UNIPROTKB|A5D7H7636 LOC528833 "Uncharacterized pro 0.688 0.850 0.266 1.9e-35
RGD|1308396634 Nop9 "NOP9 nucleolar protein" 0.675 0.837 0.261 4.3e-35
UNIPROTKB|F1SGQ1637 NOP9 "Uncharacterized protein" 0.693 0.855 0.261 2.2e-34
DICTYBASE|DDB_G0276255841 DDB_G0276255 "Pumilio domain-c 0.412 0.385 0.228 5.6e-34
UNIPROTKB|E2QTR5637 C14orf21 "Uncharacterized prot 0.693 0.855 0.264 6.2e-34
UNIPROTKB|Q86U38636 NOP9 "Nucleolar protein 9" [Ho 0.699 0.864 0.255 8e-34
FB|FBgn0033169665 CG11123 [Drosophila melanogast 0.358 0.424 0.262 1.7e-25
ASPGD|ASPL0000071747699 AN10618 [Emericella nidulans ( 0.623 0.701 0.223 6.6e-23
TAIR|locus:2193982 PUM23 "pumilio 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2047 (725.6 bits), Expect = 2.1e-213, Sum P(2) = 2.1e-213
 Identities = 403/695 (57%), Positives = 519/695 (74%)

Query:     1 MVAVGLKGLPSSRQRLCDLVEDSLMGGDDKSYKPXXXXXXXXXXXXXE-SFGFDADNSNK 59
             MV+VG K LPS R R  +  EDSLMG   KS                + + GFD D+S K
Sbjct:     1 MVSVGSKSLPSRRHRTIE--EDSLMGERGKSSNNHSERNKGMRRKDHKGNRGFDVDSSKK 58

Query:    60 NXXXXXXXXXXXXRK--SWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEE 117
             N            +K   ++HQN        VRK++DP+ +KYF+EI+NLF+SNEV+LEE
Sbjct:    59 NQSGGAPNVKPASKKHSEFEHQN------QFVRKEIDPETSKYFSEIANLFDSNEVELEE 112

Query:   118 RSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRS 177
             RSV+C NALEETRG+E E+ATDYIISH LQTLLEGC++D LCSF+R  A VFPAIAMDRS
Sbjct:   113 RSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRS 172

Query:   178 GSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLC 237
             GSHVAE+ALKSLA HL++  A+S+IEE L SICKVIV NP+D+MCNCYGSHVLR LLCLC
Sbjct:   173 GSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHVLRRLLCLC 232

Query:   238 RGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKD 297
             +G  LDS + + AK S+ LA+RLNL  SQ + NNL   H  F  +  +L+SG+L+ SR+D
Sbjct:   233 KGVSLDSPELYGAKSSKALAKRLNLKMSQLDDNNLEIPHQGFPGMLTYLLSGLLSCSRED 292

Query:   298 LRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNV-VEGNFIPMTVVHDVLN 356
             ++ LQ DQYSSLVLQTALRL++  D +LL+II ++L  N  N  VEG  I   V  ++L 
Sbjct:   293 MKYLQVDQYSSLVLQTALRLMLKQDEQLLEIIPLILRCNSTNKKVEGFHIETNVAKEILE 352

Query:   357 LMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQ 416
              MK+ ++SHL+EVILEVAP+SLY+EMF KVF+NSLF+LS   CANFV+QAL+SHARDQ+Q
Sbjct:   353 SMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALISHARDQEQ 412

Query:   417 MALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIV 476
             M ++WEEL  +F++LLE G+SGVVA+LIA SQRL +HE KCCEAL  AV STN S   I+
Sbjct:   413 MGIMWEELAPRFKDLLEQGKSGVVASLIAVSQRLQSHENKCCEALVGAVCSTNESRISIL 472

Query:   477 PGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHV 536
             P +LFL+ YF C DKS W W  G K+ ++G LILQ +F+F S+ IQPY+TS+TSM+A+++
Sbjct:   473 PRLLFLDYYFGCRDKSTWEWAPGAKMHVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYI 532

Query:   537 LEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLS 596
              E AKD++GARVIEA+L+S  + KQK R+++KL+GHFGELS+H SGSFTVE+CF A +L+
Sbjct:   533 TETAKDSSGARVIEAFLASDAATKQKRRLIIKLRGHFGELSLHTSGSFTVEKCFDACNLT 592

Query:   597 LRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQSAKQLTYKEFYSTFG 656
             LRE IASEL  V+ +LSKTKQGP+L+RKLDIDG+ +RPDQW+ +Q AKQ TY EF S FG
Sbjct:   593 LREAIASELLDVKVDLSKTKQGPYLLRKLDIDGYASRPDQWKSRQEAKQSTYNEFCSAFG 652

Query:   657 SNDTKSSRKDSFLADSSKQTSNSQGIKNMRKEIDN 691
             SN +    K++F++D+S+  +    +KN RKEID+
Sbjct:   653 SNKSNFP-KNTFVSDASEDAAQEIEVKNTRKEIDH 686
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005730 "nucleolus" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=IEP
GO:0009749 "response to glucose stimulus" evidence=IEP
GO:0010252 "auxin homeostasis" evidence=IMP
MGI|MGI:1915092 Nop9 "NOP9 nucleolar protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7H7 LOC528833 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308396 Nop9 "NOP9 nucleolar protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGQ1 NOP9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276255 DDB_G0276255 "Pumilio domain-containing protein C14orf21" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTR5 C14orf21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q86U38 NOP9 "Nucleolar protein 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0033169 CG11123 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000071747 AN10618 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C552PUM23_ARATHNo assigned EC number0.56050.94520.9867yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 3e-06
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 5e-05
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 2e-04
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 0.002
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 65/309 (21%)

Query: 300 TLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMK 359
               DQ+ S  LQ   + L    PE  ++I               F    ++  V+ LM 
Sbjct: 14  EFAKDQHGSRFLQ---QKLEEATPEEKELI---------------F--DEILPHVVELMV 53

Query: 360 ETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMAL 419
           +   +++++ + E   +    ++  +     +  LS       V+Q L+     ++Q++L
Sbjct: 54  DPFGNYVIQKLFEHGTEEQRLQL-LEKILGHVVRLSLDMYGCRVIQKLLESI-SEEQISL 111

Query: 420 IWEELGGKFRELLEMGRSG--VVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVP 477
           + +EL G   EL+   ++G  V+              +KC E         +        
Sbjct: 112 LVKELRGHVVELV-KDQNGNHVI--------------QKCIEKF----PPED-------- 144

Query: 478 GILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVF-RFPSEFIQPYVTSITSMEADHV 536
            + F+   F    K N      +     G  ++Q        E  +P +  I     +H 
Sbjct: 145 -LQFIIDAF----KGNCVA---LSTHPYGCRVIQRCLEHCSEEQREPLLEEIL----EHA 192

Query: 537 LEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLS 596
           LE  +D  G  V++ ++          R++ KL G+  +LS H   S  VE+C   +S  
Sbjct: 193 LELVQDQFGNYVVQ-HVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKE 251

Query: 597 LRETIASEL 605
            RE I  E+
Sbjct: 252 ERELIIDEI 260

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 786
KOG2188650 consensus Predicted RNA-binding protein, contains 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.95
COG5099777 RNA-binding protein of the Puf family, translation 99.94
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.92
COG5099777 RNA-binding protein of the Puf family, translation 99.91
KOG2050652 consensus Puf family RNA-binding protein [Translat 99.84
KOG2188650 consensus Predicted RNA-binding protein, contains 99.82
KOG2050652 consensus Puf family RNA-binding protein [Translat 99.54
KOG45741007 consensus RNA-binding protein (contains RRM and Pu 98.83
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.83
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.78
KOG45741007 consensus RNA-binding protein (contains RRM and Pu 97.73
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.41
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.19
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 92.31
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-86  Score=728.72  Aligned_cols=587  Identities=30%  Similarity=0.432  Sum_probs=497.3

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccccchhhccCCCCCCcccCCCCCHHHHHHHHHHHHHHhcCCC
Q 003928           34 PGRKKKGLNRKAKKESFGFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEV  113 (786)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lD~e~~~Yf~~i~e~l~~~~~  113 (786)
                      .++..-+|+|++..|.||+++++++||.+|+.++.-..+.+    -+-..|+.||+  .+|||+..||+++.+.++.+++
T Consensus         7 r~~~h~~~~r~~~~g~~~~~~~~skkp~~g~~~~~~~~~~~----~~e~~~q~~fg--~~dpE~~~YF~~a~~a~~~~~~   80 (650)
T KOG2188|consen    7 RSSDHSPKRRKDEEGYRGAPADASKKPQEGRNENFRPALAK----NSEFGPQNFFG--GLDPEELGYFRRAESAFKGGFE   80 (650)
T ss_pred             CCCCcchhhhccccccCCCCcccccCcCcccCCCCCCcccc----cccCCCCCCCC--CcChhhhhHHHHHHHHhhcCcc
Confidence            44445579999999999999999999999998755433332    22345778898  7899999999999999999999


Q ss_pred             CHHHHHHHHHH-HHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHh
Q 003928          114 DLEERSVLCRN-ALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMH  192 (786)
Q Consensus       114 d~EEr~~~v~n-vleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~  192 (786)
                      +.|||..++.| +|+|+.|+|+.|++||.+|++||+++..++..|++.||.++.++|..|++|+|||||+|++|+.++..
T Consensus        81 ~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~  160 (650)
T KOG2188|consen   81 RGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAAL  160 (650)
T ss_pred             ccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888777 99999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hhhhh--------------hhhhHHHHHHHHHHHHHcCch-hhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHH
Q 003928          193 LQDEH--------------AHSIIEETLKSICKVIVANPV-DVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILA  257 (786)
Q Consensus       193 ~~~e~--------------~~~~~ee~l~~i~~~l~~nl~-~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a  257 (786)
                      +..+.              .+.++++.+..|+.++.+++. .||+|+||+||+|+++.+|.|.-+...     +......
T Consensus       161 vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~-----~~~~~~~  235 (650)
T KOG2188|consen  161 VGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAE-----SEHKLAL  235 (650)
T ss_pred             hCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhh-----hHHHHHH
Confidence            65431              235677888889999999988 999999999999999999988643211     1111111


Q ss_pred             HHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhh-------hHhhhhcCcCccHHHHHHHhhhcC--CChHHHHH
Q 003928          258 ERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRK-------DLRTLQTDQYSSLVLQTALRLLVG--NDPELLQI  328 (786)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~-------~i~~L~~d~~gs~VLQ~lLe~~~~--~~~~l~~i  328 (786)
                      ++....++.. ...+..+|++|+..+..++...+...++       ++..+++|+|.|.|+|.+|++...  ..+.+++.
T Consensus       236 ~~~~~~~~~~-~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~  314 (650)
T KOG2188|consen  236 RKAAHRGMDD-WDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMES  314 (650)
T ss_pred             HHHhhccccc-hhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhh
Confidence            2221112211 1233347899999988888887766542       788999999999999999999865  34444433


Q ss_pred             HHHHhcC---CCCCc---cCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhH
Q 003928          329 ISILLGS---NKDNV---VEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANF  402 (786)
Q Consensus       329 i~~ll~~---~~~~~---~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNy  402 (786)
                      +..++.+   .+.+.   +|+.|        +..+..|+.|||+||+++++++++.+ .+|...|.++|.+||.||+|||
T Consensus       315 ~~lv~~~~~~~e~d~~~~kE~~~--------~k~~l~d~tgSrllE~Imeva~~~~~-~lf~~~f~~rl~~La~~p~aNF  385 (650)
T KOG2188|consen  315 PRLVTKFQLFNEKDGLWGKERSF--------LKELLSDQTGSRLLEVIMEVASESLL-SLFYIVFCGRLDELAVHPIANF  385 (650)
T ss_pred             hhHHHhhhhccccCcccccccHH--------HHHHHhcCcccHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHhCccccc
Confidence            2222211   11222   33333        44577899999999999999999999 5666677899999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhc
Q 003928          403 VVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFL  482 (786)
Q Consensus       403 VVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L  482 (786)
                      +||++|+++++.+++..|+++|.|++..|++++++||+.+|+++|.|++++|..++++|..+|+...++.+.+++|||..
T Consensus       386 ~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~  465 (650)
T KOG2188|consen  386 PLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFS  465 (650)
T ss_pred             hHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888999988876


Q ss_pred             ccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCC-CChHH
Q 003928          483 ESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSK-VSAKQ  561 (786)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~-~~~k~  561 (786)
                      ....++..    +|+.....|.+||+++|.+++|.++.++.++++|++|+.++|+++|++++||||||++|.+. .+++.
T Consensus       466 ~~~~g~~~----~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~  541 (650)
T KOG2188|consen  466 LTLFGCVG----EWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKI  541 (650)
T ss_pred             hhhccccc----ccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHH
Confidence            65544432    35666678899999999999999998999999999999999999999999999999999995 46789


Q ss_pred             HHHHHHHHHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhHhhhhcCCChHHHHHHcchhhhccChhHHHHHH
Q 003928          562 KHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQ  641 (786)
Q Consensus       562 r~~Li~~L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl~l~~fkr~~~~W~~~~  641 (786)
                      +++||+.|.|++++||++.|||||+|+||+++++.+|++||+||+...+.+.+|+||++||.||.+++|+++|+||.+.|
T Consensus       542 ~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~~~~vk~s~~gk~v~~~~~l~ly~~~p~~W~~~~  621 (650)
T KOG2188|consen  542 KEKLINILDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGIHNDVKSSKYGKFVMLNWDLELYRRSPDDWKEKM  621 (650)
T ss_pred             HHHHHHHhhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhhccccccCcchHHHHHhccHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhH
Q 003928          642 SAKQ  645 (786)
Q Consensus       642 ~~~~  645 (786)
                      ++.+
T Consensus       622 k~~~  625 (650)
T KOG2188|consen  622 KKSE  625 (650)
T ss_pred             Hhcc
Confidence            9866

>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-16
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 7e-12
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-16
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-10
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 3e-08
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-11
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-07
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-07
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-07
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 7e-11
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 3e-10
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 6e-08
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 8e-07
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 6e-06
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 7e-05
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-10
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 6e-10
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 5e-05
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
 Score = 81.6 bits (201), Expect = 1e-16
 Identities = 45/358 (12%), Positives = 104/358 (29%), Gaps = 54/358 (15%)

Query: 277 PVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSN 336
           P+F  L   L++G        L     D      L+      + ++ ++ + +      +
Sbjct: 8   PIFISLEDVLLNG-------QLIDFAIDPSGVKFLEA--NYPLDSEDQIRKAVFEKFTES 58

Query: 337 KDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSS 396
               V               L      + +++ ++E+A  +   E+  ++    L  +  
Sbjct: 59  TTLFVG--------------LCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCK 104

Query: 397 HHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSG--VVAALIAASQRLHTHE 454
              A  VVQ  +      +   LI E        +    +    V+  ++          
Sbjct: 105 DKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMC-TDQISIHVIQRVVKQ-------- 155

Query: 455 RKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVF 514
                          +        + FL S  S        +   +  Q+I  L      
Sbjct: 156 ---------------LPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKL 200

Query: 515 RFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYL-SSKVSAKQKHRVVLK-LKGH 572
                 IQ  + S+ +    +    + +     VI+  + SS +    +  ++ K L  +
Sbjct: 201 PCFKFRIQ-LLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRN 259

Query: 573 FGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGF 630
              +S     S  +E  F  +  +L   +  E+      +   +     +  L    +
Sbjct: 260 LLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI--FSGYVKDVESNRDALDILLFHQY 315
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
Probab=100.00  E-value=3.9e-42  Score=376.02  Aligned_cols=321  Identities=15%  Similarity=0.188  Sum_probs=252.3

Q ss_pred             HHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhh
Q 003928          121 LCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHS  200 (786)
Q Consensus       121 ~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~  200 (786)
                      |.+++++++.|++++|++||+|||+||++|+.++++++..+|+++.+++..||+|+|||||+|++|+.++...       
T Consensus         3 ~~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~-------   75 (333)
T 3bwt_A            3 FADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQ-------   75 (333)
T ss_dssp             TTTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHH-------
T ss_pred             cccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHH-------
Confidence            4567899999999999999999999999999999999999999999999999999999999999999887532       


Q ss_pred             hHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHH
Q 003928          201 IIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFS  280 (786)
Q Consensus       201 ~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~  280 (786)
                           ...|.+.+.+++.+|++|+|||||||++++.+++..                                       
T Consensus        76 -----~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~---------------------------------------  111 (333)
T 3bwt_A           76 -----RIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDE---------------------------------------  111 (333)
T ss_dssp             -----HHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHH---------------------------------------
T ss_pred             -----HHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHH---------------------------------------
Confidence                 335667888999999999999999999998763210                                       


Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcC
Q 003928          281 ELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKE  360 (786)
Q Consensus       281 ~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d  360 (786)
                       ....+++.+.    +++..|+.|++||+|||.+|+...+  .....|+..+.                  +++..++.+
T Consensus       112 -~~~~i~~el~----~~~~~L~~d~~gn~Viqk~l~~~~~--~~~~~i~~~l~------------------~~~~~l~~~  166 (333)
T 3bwt_A          112 -EAQIVVDSLR----PYTVQLSKDLNGNHVIQKCLQRLKP--ENFQFIFDAIS------------------DSCIDIATH  166 (333)
T ss_dssp             -HHHHHHHHHG----GGHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHHHH------------------HSHHHHHTS
T ss_pred             -HHHHHHHHHH----HHHHHHhcCCcccHHHHHHHHHCCH--HHHHHHHHHHH------------------HHHHHHhcC
Confidence             0111223332    4678899999999999999987532  22334555433                  467789999


Q ss_pred             CchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHH
Q 003928          361 TAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVV  440 (786)
Q Consensus       361 ~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv  440 (786)
                      ++||+|+|+||++++++.+..|++.+ .+++..|+.|+|||||||++|+.+++.+ ....                    
T Consensus       167 ~~Gs~Vvq~~l~~~~~~~~~~l~~el-~~~~~~L~~d~~GnyVvQ~~L~~~~~~~-~~~~--------------------  224 (333)
T 3bwt_A          167 RHGCCVLQRCLDHGTTEQCDNLCDKL-LALVDKLTLDPFGNYVVQYIITKEAEKN-KYDY--------------------  224 (333)
T ss_dssp             TTHHHHHHHHHHHCCHHHHHHHHHHH-HTTHHHHHTSTTHHHHHHHHHHHHHHHT-CCSH--------------------
T ss_pred             chhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhCCccc-cchh--------------------
Confidence            99999999999999999888888866 4788899999999999999987653110 0000                    


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCC
Q 003928          441 AALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEF  520 (786)
Q Consensus       441 ~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~  520 (786)
                                                                                                      
T Consensus       225 --------------------------------------------------------------------------------  224 (333)
T 3bwt_A          225 --------------------------------------------------------------------------------  224 (333)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHH-----HhHHHHhcCCCChHHHHHHHhcCCH
Q 003928          521 IQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLK-----GHFGELSVHPSGSFTVERCFTASSL  595 (786)
Q Consensus       521 ~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~-----g~~~~LA~~k~GS~VVek~~~~~~~  595 (786)
                      ...+++.|    .+++.+|+++++||+||+++|..+   ..++.++..+.     +++..|+.|+||++||+++|+.++.
T Consensus       225 ~~~ii~~l----~~~~~~Ls~~k~gs~Vvek~l~~~---~~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~  297 (333)
T 3bwt_A          225 THKIVHLL----KPRAIELSIHKFGSNVIEKILKTA---IVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHK  297 (333)
T ss_dssp             HHHHHHHH----GGGHHHHHTSTTHHHHHHHHHTSH---HHHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHcccHHHHHHHHHHccc---chhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccC
Confidence            00111111    135677888999999999988864   23556666654     5789999999999999999998863


Q ss_pred             ---HHHHHHHHHHHHhH-hhhhcCCChHHHHHHcc
Q 003928          596 ---SLRETIASELSAVR-NELSKTKQGPHLIRKLD  626 (786)
Q Consensus       596 ---~~Ke~I~~eL~~~~-~~L~~s~~Gr~V~~kl~  626 (786)
                         .+++.|+++|.++. ..|+.++||++||.++.
T Consensus       298 ~~~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l~  332 (333)
T 3bwt_A          298 QNDYLYKRLSEIVAPLLVGPIRNTPHGKRIIGMLH  332 (333)
T ss_dssp             HCHHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTSC
T ss_pred             ccHHHHHHHHHHHHHhchhhhcCCCCHHHHHHHhc
Confidence               57899999999997 89999999999998875
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 786
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 3e-14
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 9e-11
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 4e-07
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 3e-14
 Identities = 42/283 (14%), Positives = 97/283 (34%), Gaps = 16/283 (5%)

Query: 353 DVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHAR 412
            ++   ++   S  +++ LE A  +    +F ++ +   + L      N+V+Q       
Sbjct: 25  HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA-AYQLMVDVFGNYVIQKFFEFG- 82

Query: 413 DQDQMALIWEELGGKFRELLEMGR-SGVVAALIAASQRLHTHERKCCEALAAAVSSTNVS 471
             +Q   + E + G    L        V+   +        +E              + +
Sbjct: 83  SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQN 142

Query: 472 PRCIVPGILFLESYFSCED--KSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSIT 529
              +V   +      S +    +       +     G  ++Q +              I 
Sbjct: 143 GNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP---DQTLPIL 199

Query: 530 SMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERC 589
                H  +  +D  G  VI+  L      + K ++V +++G+   LS H   S  VE+C
Sbjct: 200 EELHQHTEQLVQDQYGNYVIQHVLEHG-RPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 258

Query: 590 FTASSLSLRETIASELSAVRNE-------LSKTKQGPHLIRKL 625
            T +S + R  +  E+  + +        + K +   ++++K+
Sbjct: 259 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 301
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 99.97
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=337.81  Aligned_cols=312  Identities=16%  Similarity=0.200  Sum_probs=228.3

Q ss_pred             HhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHH
Q 003928          126 LEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEET  205 (786)
Q Consensus       126 leEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~  205 (786)
                      ++++.|+++++|+||.|||+||++|+.++++++..||+++.+++.+||.|+|||||+|++|++++..            .
T Consensus        19 l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~~~~~------------~   86 (339)
T d1m8za_          19 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE------------Q   86 (339)
T ss_dssp             GGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHH------------H
T ss_pred             HHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhhCCHH------------H
Confidence            7889999999999999999999999999999999999999999999999999999999999988753            3


Q ss_pred             HHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHH
Q 003928          206 LKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKF  285 (786)
Q Consensus       206 l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~  285 (786)
                      ...|++.+.+++.+|+.|+||+||+|+++..+...                                     ..    ..
T Consensus        87 ~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~-------------------------------------~~----~~  125 (339)
T d1m8za_          87 KLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD-------------------------------------QQ----NE  125 (339)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH-------------------------------------HH----HH
T ss_pred             HHHHHHHHHhhHHHHhcccccchHHHhhhccCCHH-------------------------------------HH----HH
Confidence            45678889999999999999999999999765100                                     00    01


Q ss_pred             HHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhH
Q 003928          286 LISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSH  365 (786)
Q Consensus       286 l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~  365 (786)
                      ++..+.    .++..++.|++|++|+|.+++...+..  ...++..+.                  +.+..++.+++|++
T Consensus       126 l~~el~----~~~~~l~~d~~~~~v~~~~l~~~~~~~--~~~i~~~~~------------------~~~~~l~~~~~g~~  181 (339)
T d1m8za_         126 MVRELD----GHVLKCVKDQNGNHVVQKCIECVQPQS--LQFIIDAFK------------------GQVFALSTHPYGCR  181 (339)
T ss_dssp             HHHTTT----TCHHHHHHSTTHHHHHHHHHHHSCGGG--GHHHHHHTT------------------TTHHHHHTSTTHHH
T ss_pred             HHHHHh----hhhHHHhcCCCcchHHHHHHHhcCHHH--HHHHHHHHH------------------HHHHHHHhCcchhH
Confidence            122221    356677888888888888887654322  112333221                  24556778888888


Q ss_pred             HHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHH
Q 003928          366 LMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIA  445 (786)
Q Consensus       366 vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie  445 (786)
                      ++|.+++.++++....+.+.+ .+.+..|+.|+|||||||.+|++.+ +.....|++.|.                    
T Consensus       182 vlq~~l~~~~~~~~~~l~~~l-~~~~~~L~~~~~G~~vvq~~l~~~~-~~~~~~i~~~l~--------------------  239 (339)
T d1m8za_         182 VIQRILEHCLPDQTLPILEEL-HQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIR--------------------  239 (339)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHH-HHTHHHHTTSTTHHHHHHHHHHHSC-HHHHHHHHHHHT--------------------
T ss_pred             HHHHHHhcCCHHHHHHHHHHH-HHHHHHHHhCccHHHHHHHHHHcCC-HHHHHHHHHHHH--------------------
Confidence            888888888777777777755 4677788888888888888887764 333333333221                    


Q ss_pred             HHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHHHH
Q 003928          446 ASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYV  525 (786)
Q Consensus       446 ~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~~v  525 (786)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (339)
T d1m8za_         240 --------------------------------------------------------------------------------  239 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHH-------HhHHHHhcCCCChHHHHHHHhcCCHHHH
Q 003928          526 TSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLK-------GHFGELSVHPSGSFTVERCFTASSLSLR  598 (786)
Q Consensus       526 ~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~-------g~~~~LA~~k~GS~VVek~~~~~~~~~K  598 (786)
                              +++.++++|++||||+|.++.... ++.+..++..+.       +.+..|+.|+||+|||+++++.++..+|
T Consensus       240 --------~~~~~l~~~k~gS~vve~~l~~~~-~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~  310 (339)
T d1m8za_         240 --------GNVLVLSQHKFASNVVEKCVTHAS-RTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR  310 (339)
T ss_dssp             --------TCHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHH
T ss_pred             --------hhHHHHHcchhHHHHHHHHHHhCC-HHHHHHHHHHHHhcccCchHHHHHHHcCCcccHHHHHHHHhCCHHHH
Confidence                    235566777777777777776653 455666565543       3467777777777777777777777777


Q ss_pred             HHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928          599 ETIASELSAVRNELSKTKQGPHLIRKL  625 (786)
Q Consensus       599 e~I~~eL~~~~~~L~~s~~Gr~V~~kl  625 (786)
                      +.|+.+|.++..+|..++||++|+.+|
T Consensus       311 ~~i~~~l~~~~~~L~~~~~G~~v~~~l  337 (339)
T d1m8za_         311 KIVMHKIRPHIATLRKYTYGKHILAKL  337 (339)
T ss_dssp             HHHHHTTGGGHHHHTTSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            777777777777777777777777665
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure