Citrus Sinensis ID: 003936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | 2.2.26 [Sep-21-2011] | |||||||
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.621 | 0.375 | 0.307 | 3e-47 | |
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.385 | 0.264 | 0.319 | 5e-28 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.300 | 0.124 | 0.371 | 8e-25 | |
| Q9RBS2 | 1024 | Protein PopC OS=Ralstonia | yes | no | 0.485 | 0.372 | 0.272 | 3e-22 | |
| O82500 | 1095 | Putative disease resistan | no | no | 0.314 | 0.225 | 0.349 | 9e-22 | |
| B4N9T4 | 641 | Leucine-rich repeat prote | N/A | no | 0.593 | 0.726 | 0.268 | 1e-19 | |
| B4LXW1 | 614 | Leucine-rich repeat prote | N/A | no | 0.605 | 0.773 | 0.268 | 1e-19 | |
| B4JTV9 | 622 | Leucine-rich repeat prote | N/A | no | 0.605 | 0.763 | 0.268 | 2e-19 | |
| Q8C0R9 | 853 | Leucine-rich repeat and d | yes | no | 0.583 | 0.536 | 0.254 | 3e-19 | |
| B3LWU3 | 641 | Leucine-rich repeat prote | N/A | no | 0.6 | 0.734 | 0.264 | 6e-19 |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 182/591 (30%), Positives = 274/591 (46%), Gaps = 103/591 (17%)
Query: 10 INPYTFSKMTELRLLK--FCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTL-NILHWEN 66
I+ +F M L+ L+ + G + +V+ +P +LR +W PLK+L + E
Sbjct: 537 IDKESFKGMRNLQYLEIGYYGDLPQSLVY----LPL-KLRLLDWDDCPLKSLPSTFKAEY 591
Query: 67 LVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTE 126
LV+L M SK+ +LW+ L SLK ++L+YS L ++PDLSLA NLE LDL C SL
Sbjct: 592 LVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVT 651
Query: 127 THSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMT-------- 178
SSIQ KL LD+ CK L S PT ++ + L+ L L GC NL+N P +
Sbjct: 652 LPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDF 711
Query: 179 ----------SCHLRSTLPLLGVGIEELPSSIKCL------SNIGELLIYSCKRLENISS 222
C LP G++ L +C+ + L + K E +
Sbjct: 712 PEGRNEIVVEDCFWNKNLP---AGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKH-EKLWE 767
Query: 223 SIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282
I L LE + + NL E+P SK L L C +LPS
Sbjct: 768 GIQSLGSLEGMDLSESENLT--EIPDL------SKATKLESLILNNCKSLVTLPSTIGNL 819
Query: 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDG---------------------TAIRE 321
L LE+ +C E LP ++ NL +L L + G TAI E
Sbjct: 820 HRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEE 878
Query: 322 LPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFP----EIPFCN 377
+P +G L L +LE+K C+ LE + + + L S+E++++S CS+L+ FP I +
Sbjct: 879 IPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISESIKWLY 937
Query: 378 IDGSGIERIPS-------SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDEL 430
++ + IE IP LKLN C L +LP+++ + L S E+ +C LE LP ++
Sbjct: 938 LENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDV 997
Query: 431 G-------NLEALEELR-------------VEGTGIREVPKSLAQLA-LSKLKLKKCSSF 469
+L LR +E T I E+P ++ L L KL++K+C+
Sbjct: 998 NLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGL 1057
Query: 470 ESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520
E LP+ + +S SL L++ C + P +E L ++ TAI EVP
Sbjct: 1058 EVLPTDVNLS-SLMILDLSGCSSLRTFPLISTRIE---CLYLQNTAIEEVP 1104
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 180/341 (52%), Gaps = 38/341 (11%)
Query: 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLS 108
+ W FP + + LV L++ + + LW + ++L SL+RIDL +SK LT+ PD +
Sbjct: 584 YPWESFP----STFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFT 639
Query: 109 LAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC 168
NLE ++L CS+L E H S+ +K+ L L+ CKSL P ++ + L+ L LR C
Sbjct: 640 GMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSC 698
Query: 169 SNLKNLPKMTS-CHLRSTLPLLGVGIEELPSSI-KCLSNIGELLIYSCKRLENISSSIFK 226
+L+ LP++ + + G GI ELPSSI + +++ +LL+++ K L + SSI +
Sbjct: 699 DSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICR 758
Query: 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQ--------PSSELKLKKCPRPESLPSG 278
L+ L S+ + C L+ L ++D R + PSS ++L K
Sbjct: 759 LKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLI-------- 810
Query: 279 QCMFKSLTSLEIIDCPNFERLP--DELGNLQALNRL---IIDGTAIRELPEGLGQLALLS 333
MF+ D +FE P + L +L+ LN +IDG LPE +G L+ L
Sbjct: 811 ILMFRGFK-----DGVHFEFPPVAEGLHSLEYLNLSYCNLIDGG----LPEEIGSLSSLK 861
Query: 334 KLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP 374
KL+L + E++ SSI +L +++S+++ +C L PE+P
Sbjct: 862 KLDLSR-NNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELP 901
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
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Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 17/253 (6%)
Query: 4 INSEIQINPYTFSKMTELRLLKFCGSKNK-----CMVHSLEGVPFTELRYFEWHQFPLKT 58
+N + NP F KM LRLLK SK + LE +P ++LR W +PL +
Sbjct: 1161 LNLKFDANPNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYLP-SKLRLLHWEYYPLSS 1219
Query: 59 L-NILHWENLVSLKMPGSKVTQLWDDVQ--------NLVSLKRIDLKYSKLLTKLPDLSL 109
L + ENLV L +P S +LW + +L LK++ L YS LTK+P LS
Sbjct: 1220 LPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSS 1279
Query: 110 AQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCS 169
A NLE +DL C+SL SI YL KL L+L C L ++P+ + + L+ L L GCS
Sbjct: 1280 ATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCS 1339
Query: 170 NLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229
L N P++ S +++ L + G I+E+PSSIK L + +L + + + L+N+ +SI+KL+
Sbjct: 1340 KLGNFPEI-SPNVKE-LYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKH 1397
Query: 230 LESIRIHRCPNLQ 242
LE++ + C +L+
Sbjct: 1398 LETLNLSGCISLE 1410
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2 | Back alignment and function description |
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Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 192/436 (44%), Gaps = 55/436 (12%)
Query: 166 RGCSNLKNLPKMT--SCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSS 223
R +LK++ +M+ S L+S LP + ELP ++++ L C L + ++
Sbjct: 190 RAVDHLKSVLRMSGDSVQLKS-LP-----VPELPDVTFEIAHLKNLETVDCD-LHALPAT 242
Query: 224 IFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFK 283
+ L LE++ + N F +P +E SE LK P P G
Sbjct: 243 LENLFLLETLSLKGAKN--FKALPDAVWRLPALQELKLSETGLKSLP-----PVGGG--S 293
Query: 284 SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSEL 343
+L L I D P E+LP +L L L + T + +L G+GQL L L L++ +L
Sbjct: 294 ALQRLTIEDSP-LEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLPALKSLSLQDNPKL 352
Query: 344 EYISSSIFKLKSVESI--EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCS---- 397
E + S+ +++ + I I + G + +D S + ++P+ L +
Sbjct: 353 ERLPKSLGQVEELTLIGGRIHALPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSL 412
Query: 398 ---KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA 454
KL LP+S+ +L +L + D KL LP G L L+EL + G I E+P
Sbjct: 413 SNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELP---- 468
Query: 455 QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGT 514
+ SS ++L +D LP + G L L L++ T
Sbjct: 469 -------SMGGASSLQTL--------------TVDDTALAGLPADFGALRNLAHLSLSNT 507
Query: 515 AIREVPESLGQLSSLEWLVLSDN-NLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLS 573
+RE+P + G L +L+ L L N L +P SL LS L L L N+++ +P + P S
Sbjct: 508 QLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPP-MGPGS 566
Query: 574 SLKYLDLFENNLDRIP 589
+LK L + + L IP
Sbjct: 567 ALKTLTVENSPLTSIP 582
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Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function description |
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Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 19/266 (7%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKFCGS-----KNKCMVH-SLEGVPF-TELRYFEWHQ 53
M +I E+ I+ TF +M L LKF S K K + EG+ + +LR W
Sbjct: 536 MCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSYLPQLRLLHWDA 595
Query: 54 FPLKTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQN 112
+PL+ + E LV L M SK+ +LW VQ L +L+ ++L S+ L LP+L A
Sbjct: 596 YPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATK 655
Query: 113 LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172
L LDLG+C SL E SSI+ L L +L++ CK L +PT+I+ L+ L R C+ L+
Sbjct: 656 LNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQ 715
Query: 173 NLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLI--YSCKRLENISSSIFKL--- 227
P++ S ++R L L+G I E+P S+K S I E+ + KRL ++ + KL
Sbjct: 716 TFPEI-STNIR-LLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEKLCLR 773
Query: 228 --QFLESI--RIHRCPNLQFLEMPSC 249
+ LE+I + P LQ +++ C
Sbjct: 774 ENKELETIPRYLKYLPRLQMIDISYC 799
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Arabidopsis thaliana (taxid: 3702) |
| >sp|B4N9T4|SUR8_DROWI Leucine-rich repeat protein soc-2 homolog OS=Drosophila willistoni GN=Sur-8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 259/580 (44%), Gaps = 114/580 (19%)
Query: 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DL 107
+ Q +K L E + L + S +T + + V+ V L + L YS + +LP ++
Sbjct: 144 IQADQDVIKALQRCRDEGIKRLDLSKSSITVIPNTVKECVHLTELYL-YSNKIGQLPTEI 202
Query: 108 SLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLVLR 166
NL L L +SLT S+Q+ N+L+VLDL R L +P I+ + L L LR
Sbjct: 203 GCLVNLRNLALNE-NSLTSLPDSLQHCNQLKVLDL-RHNKLAEIPPVIYRLRSLTTLYLR 260
Query: 167 ------GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENI 220
+L+ L +T LR I EL S+I L N+ L + S LE++
Sbjct: 261 FNRITTVADDLRQLVNLTMLSLREN------KIRELGSAIGALVNLTTLDV-SHNHLEHL 313
Query: 221 SSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC 280
I C NL L++ Q + L + P+S+ +
Sbjct: 314 PEDIGN-----------CVNLSALDL------------QHNELLDI-----PDSIGN--- 342
Query: 281 MFKSLTSLEIIDCPNFERL---PDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLEL 337
KSL L + + RL P L N ++++ ++G I +LP+G+ LA L+ L +
Sbjct: 343 -LKSLVRLGL----RYNRLTSVPASLKNCKSMDEFNVEGNGITQLPDGM--LASLNGLTI 395
Query: 338 KNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVL------ 391
S ++ S + + +N N+ N++ + I++IP +
Sbjct: 396 ITLSRNQFTS-----YPTGGPAQFTNVYNI---------NLEHNRIDKIPYGIFSRAKGL 441
Query: 392 -KLN-KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREV 449
KLN K + L +LP + + ++ L + L++LPD++ NL+ LE L + ++++
Sbjct: 442 TKLNMKENMLTALPLDIGTWVNMVELNLA-TNALQKLPDDIMNLQNLEILILSNNMLKKI 500
Query: 450 PKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVL 509
P ++ L+K + +R+ V LP EIG L L+ L
Sbjct: 501 PNTIG-------NLRKLRILDLEENRIEV-----------------LPHEIGLLHELQRL 536
Query: 510 TIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NLERIPER 568
++ I +P S+G LS L L +S+NNLQ +PE + L SL +L ++ N LE++P
Sbjct: 537 ILQTNQITMLPRSIGHLSQLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFE 596
Query: 569 LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608
L +LKYL N+D+ P L + P I + SL L
Sbjct: 597 LALCQNLKYL-----NIDKCP--LSTIPPEIQAGGPSLVL 629
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Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Drosophila willistoni (taxid: 7260) |
| >sp|B4LXW1|SUR8_DROVI Leucine-rich repeat protein soc-2 homolog OS=Drosophila virilis GN=Sur-8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 155/577 (26%), Positives = 259/577 (44%), Gaps = 102/577 (17%)
Query: 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP 105
++ + Q +K L E + L + S +T L + V+ V L + L YS + +LP
Sbjct: 114 VKNIQADQDVIKALQRCRDEGIKRLDLSKSSITVLPNTVRECVHLTELYL-YSNKIGQLP 172
Query: 106 -DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRL 163
++ NL L L +SLT S+++ +L+VLDL R L +P+ I+ + L L
Sbjct: 173 TEIGCLVNLRNLALNE-NSLTSLPESLKHCTQLKVLDL-RHNKLAEIPSVIYRLRSLTTL 230
Query: 164 VLR------GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL 217
LR +L+ L +T LR I+EL S+I L N+ L + S L
Sbjct: 231 YLRFNRITAVADDLRQLVNLTMLSLREN------KIKELGSAIGALVNLTTLDV-SHNHL 283
Query: 218 ENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS 277
E++ I C NL L++ Q + L + P+S+ +
Sbjct: 284 EHLPDDIGN-----------CVNLSALDL------------QHNELLDI-----PDSIGN 315
Query: 278 GQCMFKSLTSLEIIDCPNFERL---PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLS 333
KSL L + + RL P L N ++++ ++G I +LP+G L L+ L+
Sbjct: 316 ----LKSLVRLGL----RYNRLNSVPISLKNCKSMDEFNVEGNGITQLPDGMLASLSALT 367
Query: 334 KLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKL 393
+ L Y + + +V SI + + +IP+ GI + KL
Sbjct: 368 TITLSRNQFTSYPTGGPAQFTNVYSINLEH----NRIDKIPY------GIFSRAKGLTKL 417
Query: 394 N-KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS 452
N K + L +LP + + ++ L + L++LPD++ NL+ LE L + ++++P +
Sbjct: 418 NMKENMLTALPLDVGTWVNMVELNLA-TNALQKLPDDIMNLQNLEILILSNNMLKKIPNT 476
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIK 512
+ L+K + +R+ V LP EIG L L+ L ++
Sbjct: 477 IGN-------LRKLRILDLEENRIEV-----------------LPHEIGLLHELQRLILQ 512
Query: 513 GTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NLERIPERLDP 571
I +P S+G LS+L L +S+NNLQ +PE + L SL +L ++ N LE++P L
Sbjct: 513 TNQITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELAL 572
Query: 572 LSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608
+LKYL N+D+ P L + P I + SL L
Sbjct: 573 CQNLKYL-----NIDKCP--LGTIPPEIQAGGPSLVL 602
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Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Drosophila virilis (taxid: 7244) |
| >sp|B4JTV9|SUR8_DROGR Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 155/577 (26%), Positives = 259/577 (44%), Gaps = 102/577 (17%)
Query: 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP 105
++ + Q +K L E + L + S +T L + V+ V L + L YS + +LP
Sbjct: 122 VKNIQADQDVIKALQRCRDEGIKRLDLSKSSITVLPNTVRECVHLTELYL-YSNKIGQLP 180
Query: 106 -DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRL 163
++ NL L L +SLT S+++ +L+VLDL R L +P+ I+ + L L
Sbjct: 181 TEIGCLVNLRNLALNE-NSLTSLPESLKHCTQLKVLDL-RHNKLAEIPSVIYRLRSLTTL 238
Query: 164 VLR------GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL 217
LR +L+ L +T LR I+EL S+I L N+ L + S L
Sbjct: 239 YLRFNRITTVADDLRQLVNLTMLSLREN------KIKELGSAIGALVNLTTLDV-SHNHL 291
Query: 218 ENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS 277
E++ I C NL L++ Q + L + P+S+ +
Sbjct: 292 EHLPEDIGN-----------CVNLSALDL------------QHNELLDI-----PDSIGN 323
Query: 278 GQCMFKSLTSLEIIDCPNFERL---PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLS 333
KSL L + + RL P L N ++++ ++G I +LP+G L L+ L+
Sbjct: 324 ----LKSLVRLGL----RYNRLNCVPVSLKNCKSMDEFNVEGNGITQLPDGMLASLSALT 375
Query: 334 KLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKL 393
+ L Y + + +V SI + + +IP+ GI + KL
Sbjct: 376 SITLSRNQFTSYPTGGPAQFTNVYSINLEH----NRIDKIPY------GIFSRAKGLTKL 425
Query: 394 N-KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS 452
N K + L +LP + + ++ L + L++LPD++ NL+ LE L + ++++P +
Sbjct: 426 NMKENMLTALPLDVGTWVNMVELNLA-TNALQKLPDDIMNLQNLEILILSNNMLKKIPNT 484
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIK 512
+ L+K + +R+ V LP EIG L L+ L ++
Sbjct: 485 IGN-------LRKLRILDLEENRIEV-----------------LPHEIGLLHELQRLILQ 520
Query: 513 GTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NLERIPERLDP 571
I +P S+G LS+L L +S+NNLQ +PE + L SL +L ++ N LE++P L
Sbjct: 521 TNQITMLPRSVGHLSNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELAL 580
Query: 572 LSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608
+LKYL N+D+ P L + P I + SL L
Sbjct: 581 CQNLKYL-----NIDKCP--LGTIPPEIQAGGPSLVL 610
|
Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Drosophila grimshawi (taxid: 7222) |
| >sp|Q8C0R9|LRRD1_MOUSE Leucine-rich repeat and death domain-containing protein 1 OS=Mus musculus GN=Lrrd1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 140/551 (25%), Positives = 245/551 (44%), Gaps = 93/551 (16%)
Query: 63 HWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKL---------LTKLPDLSLAQNL 113
H L +L + + +T + D + +L +L+ ++L+Y++L L KL L+L N+
Sbjct: 249 HLRYLETLSLGKNMLTYIPDSLSSLKNLRILNLEYNQLTIFSKSLCFLPKLNSLNLTGNM 308
Query: 114 ------EILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSL-------TSLPTSIHSKYL 160
E+ +L SL H+ + +L +E+ L + K L ++ I +
Sbjct: 309 IGSLPKEVRELKNLESLLMDHNKLTFL-AVEIFQLPKIKELHLADNKLEAISPKIENFKE 367
Query: 161 KRLVLRGCSNLKNLPK-MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN 219
RL+ + L+++PK ++ C +L L IEELP I+ L N+ +L + K +
Sbjct: 368 LRLLNLDKNLLQSIPKKISHCVNLESLSLSDNNIEELPKKIRKLKNLRQLHVNRNKMITM 427
Query: 220 ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279
I N+ LE G + P +++K C
Sbjct: 428 TE------------EISHLSNIHILEF-----SGNQITHVP---IEIKNC---------- 457
Query: 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
+ +T +E+ + N P L LQ+L+ L +G I E+P + L LEL N
Sbjct: 458 ---RKITRVEL-NYNNIMYFPVGLCALQSLDYLSFNGNYISEIPVDMSFSKQLLHLEL-N 512
Query: 340 CSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399
++L S + L ++E ++++ + IP C I + S + + +K
Sbjct: 513 RNKLTVFSKHLCSLTNLEYLDLAKNQIMT----IPSC------ISAMVSLHVLILSDNKF 562
Query: 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL-AL 458
ES P LC K+L L+I + KL+++P E+ L+ +++L + P L QL L
Sbjct: 563 ESFPKELCSLKNLRVLDISE-NKLQKIPLEISKLKRIQKLNLSNNIFTNFPVELCQLQTL 621
Query: 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE 518
+L + + S K RLP+E+ ++ LK+L I AI++
Sbjct: 622 EELNISQTSG----------------------KKLTRLPEEVSHMTQLKILNISNNAIKD 659
Query: 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYL 578
+P+++G+L SL S+N + +P S L L SL L NN+ +P + LSSLK +
Sbjct: 660 IPKNIGELRSLVSFYASNNQISSLPSSFLSLEVLQSLDLRGNNMTALPSGIYKLSSLKEI 719
Query: 579 DLFENNLDRIP 589
+ +N L R P
Sbjct: 720 NFDDNPLMRPP 730
|
Mus musculus (taxid: 10090) |
| >sp|B3LWU3|SUR8_DROAN Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 152/575 (26%), Positives = 250/575 (43%), Gaps = 104/575 (18%)
Query: 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLS 108
+ Q +K L E + L + S +T + V++ V + + L +K+ P++
Sbjct: 144 IQADQDVIKALQRCRDEGIKRLDLSKSSITVIPSTVKDCVQITELYLYSNKIGQLPPEIG 203
Query: 109 LAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLVLR- 166
NL L L +SLT S+Q N+L+VLDL R L +P I+ + L L LR
Sbjct: 204 CLVNLRNLALNE-NSLTSLPESLQNCNQLKVLDL-RHNKLAEIPPVIYRLRSLTTLYLRF 261
Query: 167 -----GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS 221
+L+ L +T LR I EL S+I L N+ L + S LE++
Sbjct: 262 NRITAVADDLRQLVNLTMLSLREN------KIRELGSAIGALVNLTTLDV-SHNHLEHLP 314
Query: 222 SSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCM 281
I C NL L++ Q + L + P+S+ +
Sbjct: 315 EDIGN-----------CVNLSALDL------------QHNELLDI-----PDSIGN---- 342
Query: 282 FKSLTSLEIIDCPNFERL---PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLEL 337
KSL L + + RL P L N + ++ ++G I +LP+G L L+ L+ + L
Sbjct: 343 LKSLVRLGM----RYNRLTSVPATLKNCKCMDEFNVEGNGITQLPDGMLASLSGLTTITL 398
Query: 338 KNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KC 396
Y + + +V SI + + +IP+ GI + KLN K
Sbjct: 399 SRNQFTSYPTGGPAQFTNVYSINLEH----NRIDKIPY------GIFSRAKGLTKLNMKE 448
Query: 397 SKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL 456
+ L +LP + + ++ L + L++LPD++ NL+ LE L + ++++P ++
Sbjct: 449 NMLTALPLDIGTWVNMVELNLA-TNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIG-- 505
Query: 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCK--NFMRLPDEIGNLEYLKVLTIKGT 514
+L L I+D + LP EIG L L+ L ++
Sbjct: 506 ------------------------NLRRLRILDLEENRIETLPHEIGLLHELQRLILQTN 541
Query: 515 AIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NLERIPERLDPLS 573
I +P S+G L +L L +S+NNLQ +PE + L SL +L ++ N LE++P L
Sbjct: 542 QITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELALCQ 601
Query: 574 SLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608
+LKYL N+D+ P L + P I + SL L
Sbjct: 602 NLKYL-----NIDKCP--LSTIPPEIQAGGPSLVL 629
|
Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Drosophila ananassae (taxid: 7217) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | ||||||
| 147802252 | 1441 | hypothetical protein VITISV_020931 [Viti | 0.951 | 0.518 | 0.313 | 2e-70 | |
| 255544956 | 1403 | leucine-rich repeat containing protein, | 0.848 | 0.474 | 0.312 | 8e-64 | |
| 296089409 | 1161 | unnamed protein product [Vitis vinifera] | 0.857 | 0.579 | 0.287 | 7e-63 | |
| 147834354 | 1284 | hypothetical protein VITISV_019700 [Viti | 0.656 | 0.401 | 0.323 | 1e-58 | |
| 147862827 | 1454 | hypothetical protein VITISV_024045 [Viti | 0.954 | 0.515 | 0.290 | 2e-58 | |
| 147821370 | 1386 | hypothetical protein VITISV_013693 [Viti | 0.963 | 0.545 | 0.294 | 5e-58 | |
| 224145030 | 1435 | tir-nbs-lrr resistance protein [Populus | 0.608 | 0.333 | 0.343 | 3e-57 | |
| 224127917 | 1470 | tir-nbs-lrr resistance protein [Populus | 0.732 | 0.391 | 0.307 | 2e-56 | |
| 297807789 | 1281 | hypothetical protein ARALYDRAFT_488633 [ | 0.740 | 0.453 | 0.295 | 2e-55 | |
| 224145021 | 1561 | tir-nbs-lrr resistance protein [Populus | 0.588 | 0.295 | 0.341 | 3e-55 |
| >gi|147802252|emb|CAN68265.1| hypothetical protein VITISV_020931 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 276/880 (31%), Positives = 416/880 (47%), Gaps = 133/880 (15%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSKN--KCMVHSLEGVPFTELRYFEWHQFPLKTL-NILH 63
EIQ N F+KM LRLLK S + K ++ P ELRY W +PLKTL + H
Sbjct: 557 EIQCNTKVFTKMKRLRLLKLHWSDHCGKVVLPPNFEFPSQELRYLHWEGYPLKTLPSNFH 616
Query: 64 WENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSS 123
ENLV L + S + QLW + L LK IDL YSK+LTK+P S LEIL+L C S
Sbjct: 617 GENLVELHLRKSTIKQLWKRSKGLEKLKVIDLSYSKVLTKMPKFSRMPKLEILNLEGCIS 676
Query: 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSC--H 181
L + HSSI + L L+L C+ L SLP+S+ + L+ L L GC N N P++ H
Sbjct: 677 LRKLHSSIGDVKMLTYLNLGGCEKLQSLPSSMKFESLEVLHLNGCRNFTNFPEVHENMKH 736
Query: 182 LRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIR------- 234
L+ L L IEELPSSI L+++ L + C + ++FL +R
Sbjct: 737 LKE-LYLQKSAIEELPSSIGSLTSLEILDLSECSNFKKFPEIHGNMKFLRELRLNGTGIK 795
Query: 235 -----IHRCPNLQFLEMPSCN----IDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSL 285
I +L+ L++ C+ G + EL L R + LPS SL
Sbjct: 796 ELPSSIGDLTSLEILBLSECSNFEKFPGIHGNMKFLRELHLNGT-RIKELPSS---IGSL 851
Query: 286 TSLEIID---CPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSE 342
TSLEI++ C FE+ PD N++ L +L + + I+ELP +G L L +L L +
Sbjct: 852 TSLEILNLSKCSKFEKFPDIFANMEHLRKLYLSNSGIKELPSNIGNLKHLKELSLDK-TF 910
Query: 343 LEYISSSIFKLKSVESIEISNCSNLKGFPEIPF-------CNIDGSGIERIPSSV----- 390
++ + SI+ L++++++ + CSN + FPEI I+ + I +P S+
Sbjct: 911 IKELPKSIWSLEALQTLSLRGCSNFEKFPEIQRNMGSLLDLEIEETAITELPLSIGHLTR 970
Query: 391 ---LKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR 447
L L C L SLPSS+C KSL L + C LE P+ L ++E L L + GT I
Sbjct: 971 LNSLNLENCKNLRSLPSSICRLKSLKHLSLNCCSNLEAFPEILEDMEHLRSLELRGTAIT 1030
Query: 448 EVPKSLAQL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLE-Y 505
+P S+ L +L LKL C + E+LP+ + LT+L + +C LPD + +L+
Sbjct: 1031 GLPSSIEHLRSLQWLKLINCYNLEALPNSIGNLTCLTTLVVRNCSKLHNLPDNLRSLQCC 1090
Query: 506 LKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NL 562
L L + G + E +P + LSSLE+L +S+N+++ IP + QL L +L++++ L
Sbjct: 1091 LTTLDLGGCNLMEGGIPRDIWGLSSLEFLDVSENHIRCIPIGIIQLLKLTTLRMNHCLML 1150
Query: 563 ERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLK----- 617
E IP D SSL+ + E + R E L S P + L L NC K
Sbjct: 1151 EDIP---DLPSSLRRI---EAHGCRCLETLSS-PIHV--------LWSSLLNCFKSLIQA 1195
Query: 618 LDPNELSEIIKDGWMKQSVN-------------GETYITKS-----------MYFPGNE- 652
D +++ +D +Q ++ + Y S ++ PG+
Sbjct: 1196 HDSHDVQNEEEDSHKQQDIDLALPTSSGNLDEEEDLYGGNSDEEDGPLGQIDVFIPGSSG 1255
Query: 653 IPKWFRHQSTGSTISLKTPQPTGY--NKLMGFA-FCVVVACSVSECCRHESVED---DRK 706
IP+W HQ+ G + ++ P Y N +GFA F ++ + E V+ +K
Sbjct: 1256 IPEWVSHQNKGCEVRIELPM-NWYEDNDFLGFALFFHLLPLDNDDDDDDELVKRYIITQK 1314
Query: 707 CNLFDVVCDRRSE------GYDSYTSSYLGKISHVESD---------HVFLGSSIFAGEN 751
C L + D +SE DS+ +Y + V SD H+ + +G
Sbjct: 1315 CKL-TISHDDQSEMVASSISLDSFCEAYRISSNCVSSDPALRVTYVPHIAIPDHYRSG-- 1371
Query: 752 SCKRSDEFFFHIDR---SC-------CEVKKCGIHFVHAQ 781
F H+D SC +V+ CGIH ++AQ
Sbjct: 1372 ---WWKNFKAHLDTPFVSCQCGKNRPFKVEGCGIHLIYAQ 1408
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 248/793 (31%), Positives = 377/793 (47%), Gaps = 127/793 (16%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKF-----------CGSKNKCMVHSLEGVPF--TELR 47
+SKI ++ ++ FSKM LRLLKF G ++ + S +G+ +L
Sbjct: 544 ISKIE-KVDLSSVAFSKMWNLRLLKFYHNSFLSWKNPTGFVSESTLDSRDGLQSLPNKLC 602
Query: 48 YFEWHQFPLKTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPD 106
+ WH +P ++L + ENLV L MP S+V +LW V++L LK +DL S+LL LPD
Sbjct: 603 FLHWHGYPWESLPSNFSMENLVELNMPFSQVKELWTGVKHLQKLKLLDLHDSELLVTLPD 662
Query: 107 LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLR 166
LS A NLE + L C+SL E SSIQ L KL L L CK L SLP+ I KYLK L L
Sbjct: 663 LSSASNLEKIILNNCTSLLEIPSSIQCLRKLVCLSLSNCKELQSLPSLIPLKYLKTLNLS 722
Query: 167 GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226
CSNLK P+++ L L G G+EE PSS++ L + L + C+ L+++ SI
Sbjct: 723 SCSNLKKFPEISG--EIEELHLDGTGLEEWPSSVQYLDKLRLLSLDHCEDLKSLPGSI-H 779
Query: 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
L L+++ + C +L+ NI E LPS SLT
Sbjct: 780 LNSLDNLDLSWCSSLKNFPDVVGNIKYLNVGHTA-----------IEELPSSIGSLVSLT 828
Query: 287 SLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYI 346
L + D + LP +GNL +L L + ++I+ELP +G L+ L KL + ++E +
Sbjct: 829 KLNLKDT-EIKELPSSIGNLSSLVELNLKESSIKELPSSIGCLSSLVKLNIA-VVDIEEL 886
Query: 347 SSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSS 405
SS+ +L S+ + S L P C +S++KLN ++++ LP S
Sbjct: 887 PSSLGQLSSLVEFNLEK-STLTALPSSIGC----------LTSLVKLNLAVTEIKELPPS 935
Query: 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEG-TGIREVPKSLAQLA-LSKLKL 463
+ SL L + C L LP +G L+ LE+L + G +R +P S+ +L L + L
Sbjct: 936 IGCLSSLVELNLSQCPMLGSLPFSIGELKCLEKLYLCGLRRLRSIPSSIRELKRLQDVYL 995
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523
C+ LPS + L+ L + + I +VP SL
Sbjct: 996 NHCTKLSKLPS-------------------------LSGCSSLRDLVLSYSGIVKVPGSL 1030
Query: 524 GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN----NNLERIPERLDPL-----SS 574
G LSSL+ L+L NN IP ++ QLS L L +S L +P+R+ L +S
Sbjct: 1031 GYLSSLQVLLLKGNNFMRIPATIRQLSWLEVLDISYCKRLKALPELPQRIRVLVAHNCTS 1090
Query: 575 LKY----LDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDG 630
LK L F+ + ++ P+ F NC+ L+ N S I++
Sbjct: 1091 LKTVSSPLIQFQESQEQSPDDKYGFT---------------FANCVSLEKNARSNIVESA 1135
Query: 631 WMKQ-----------SVNGETYITKSMYFPGNEIPKWFRHQSTGSTISLKTPQPTGYNKL 679
+K + E ++ + FPG+EIP+ FR+Q+TG++++ P NKL
Sbjct: 1136 LLKTQHLATAVLELLTSYEEILVSPVVCFPGSEIPECFRYQNTGASVTTLLPSKWHNNKL 1195
Query: 680 MGFAFCVVVACSVSECCRHESVEDDRKCNLFDVVCDRR--SEGYDS--YTSSYLGKISH- 734
+GF FC V+ +E+ + F CD R +E DS +TS +G+ +
Sbjct: 1196 VGFTFCAVI-----------ELENRHYQDGFTFQCDCRIENEYGDSLEFTSKEIGEWGNQ 1244
Query: 735 --VESDHVFLGSS 745
E+DHVFL ++
Sbjct: 1245 FEFETDHVFLWNT 1257
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089409|emb|CBI39228.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 239/830 (28%), Positives = 365/830 (43%), Gaps = 157/830 (18%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSKN----------KCMVHSLEGVPFTELRYFEWHQFPL 56
EI F +M LRL K S K ++ +P +LRY W + L
Sbjct: 363 EISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFLLPEDFEIPSHDLRYLHWEGYSL 422
Query: 57 KTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEI 115
K+L + H ENL+ L + S + QLW + L LK + L S+LL ++P S NLE
Sbjct: 423 KSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSESQLLNEIPHFSNMPNLEQ 482
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L++ C L + SSI L KL +L+L RGC
Sbjct: 483 LNIELCEKLDKVDSSIGILKKLTLLNL-----------------------RGCQK----- 514
Query: 176 KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
I LPS+I+ L ++ L ++S ++ + SSI L L+++ I
Sbjct: 515 -----------------ISSLPSTIQYLVSLKRLYLHSIA-IDELPSSIHHLTQLQTLSI 556
Query: 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN 295
C NL+ SLPS C KSL L++ C N
Sbjct: 557 RGCENLR-------------------------------SLPSSICRLKSLEELDLYGCSN 585
Query: 296 FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS 355
P+ + N++ L L + GT ++ LP + L L++LEL+ C L + SSI++LKS
Sbjct: 586 LGTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRLKS 645
Query: 356 VESIEISNCSNLKGFPEI-------PFCNIDGSGIERIPSSVLKLNK--------CSKLE 400
+E +++ CSNL+ FPEI N+ + I+ +P S+ LN C L
Sbjct: 646 LEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQCCQNLR 705
Query: 401 SLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL-ALS 459
SLPSS+C KSL L++ C LE P+ + N+E L +L + GT I+E+P S+ L L+
Sbjct: 706 SLPSSICRLKSLEELDLYYCSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEYLNHLT 765
Query: 460 KLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV 519
++L + + SLPS + K L L + C + P+ + ++E LK L + GT+I+++
Sbjct: 766 SMRLVESKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGTSIKKL 825
Query: 520 PESLGQLSSLEWLVLSD-NNLQIIPESLNQLSSLVSLKLSN-------------NNLERI 565
P S+G L+ L LS NL+ +P S+ L SL L LS NN+ I
Sbjct: 826 PSSIGYLNHLTSFRLSYCTNLRSLPSSIGGLKSLTKLSLSGRPNRVTEQLFLSKNNIHHI 885
Query: 566 PERLDPLSSLKYLDLFE-NNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC----LKLDP 620
P + L +L+ LD+ L+ IP+ +PS SLR +D C P
Sbjct: 886 PSVISQLCNLECLDISHCKMLEEIPD--------LPS---SLR-EIDAHGCTGLGTLSSP 933
Query: 621 NELSEIIKDGWMKQSVNGET-YITKSMYFPGNEIPKWFRHQSTGSTISLKTPQPTGY-NK 678
+ L W K+ ET + + N IP+W HQ GS I ++ P + +
Sbjct: 934 SSLLWSSLLKWFKKV---ETPFEWGRINLGSNGIPRWVLHQEVGSQIRIELPMNCYHDDH 990
Query: 679 LMGFAFCVVVACSVSECCRHESVEDDRKCNLFDVVCDRRSEGYDSYTSSYLGKISHVESD 738
+GF F C +E V D FD D ++ Y + I+ ESD
Sbjct: 991 FLGFGF----------FCLYEPVVDLNLSLRFDEDLDEKAYAYKGASWCECHDINSSESD 1040
Query: 739 HVFLGSSIFAGENSCKRSDEF-FFHIDRSCC------EVKKCGIHFVHAQ 781
V++ +S+++ H C +K CGIH V++Q
Sbjct: 1041 EVWVVYCPKIAIGDKLQSNQYKHLHASFDACIIDCSKNIKSCGIHLVYSQ 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834354|emb|CAN69843.1| hypothetical protein VITISV_019700 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 199/616 (32%), Positives = 295/616 (47%), Gaps = 101/616 (16%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSK----------NKCMVHSLEGVPFTELRYFEWHQFPL 56
EI F +M LRL K S K ++ +P +LRY W + L
Sbjct: 553 EISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFLLPEDFEIPSHDLRYLHWEGYSL 612
Query: 57 KTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEI 115
K+L + H ENL+ L + S + QLW + L LK + L S+LL ++P S NLE
Sbjct: 613 KSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSESQLLNEIPHFSNMPNLEQ 672
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L++ C L + SSI L KL +L+L C+ ++SLP++I +YL L
Sbjct: 673 LNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTI--QYLVSL------------ 718
Query: 176 KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
L L + I+ELPSSI L+ + L I C+ L ++ SSI +L+ LE + +
Sbjct: 719 --------KRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDL 770
Query: 236 HRCPNL----QFLE----MPSCNIDGTRSKEQPSS--------ELKLKKCPRPESLPSGQ 279
+ C NL + +E + N+ GT K PSS L+L+ C SLPS
Sbjct: 771 YGCSNLXTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSI 830
Query: 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
KSL L++ C N E P+ + +++ L L + T I+ELP +G L L+ L L+
Sbjct: 831 WRLKSLEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQC 890
Query: 340 CSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP-------FCNIDGSGIERIPSSVLK 392
C L + SSI +LKS+E +++ CSNL+ FPEI ++ G+ I+ +PSS+
Sbjct: 891 CQNLRSLPSSICRLKSLEELDLYYCSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEY 950
Query: 393 LNKCS--------KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGT 444
LN + L SLPSS+C K L L + C LE P+ + ++E L++L + GT
Sbjct: 951 LNHLTSMRLVEXKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGT 1010
Query: 445 GIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLE 504
I+++P S+ L LTS + C N LP IG L+
Sbjct: 1011 SIKKLPSSIGYL-----------------------NHLTSFRLSYCTNLRSLPSSIGGLK 1047
Query: 505 YLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN-NNLE 563
L L++ G R E L LS NN+ IP ++QL +L L +S+ LE
Sbjct: 1048 SLTKLSLSGRPNRVT----------EQLFLSKNNIHHIPSVISQLCNLECLDISHCKMLE 1097
Query: 564 RIPERLDPLSSLKYLD 579
IP D SSL+ +D
Sbjct: 1098 EIP---DLPSSLREID 1110
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862827|emb|CAN78931.1| hypothetical protein VITISV_024045 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 263/904 (29%), Positives = 399/904 (44%), Gaps = 155/904 (17%)
Query: 7 EIQINPYTFSKMTELRLLK-FCG-----SKNKCMVHSLEGVPF-TELRYFEWHQFPLKTL 59
E+Q F+KM +LRLLK +C ++ + V + + F +LRY W L++L
Sbjct: 544 EMQFTTEVFAKMNKLRLLKVYCNDHDGLTREEYKVFLPKDIEFPHKLRYLHWQGCTLRSL 603
Query: 60 -NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDL 118
+ + ENLV + + S + QLW + L LK IDL SK L K+P S NLE L+L
Sbjct: 604 PSKFYGENLVEINLKSSNIKQLWKGDKFLGKLKVIDLSDSKQLVKMPKFSSMPNLERLNL 663
Query: 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMT 178
C SL E H SI L +L L+L C+ L S P + + L+ L L C NLK PK+
Sbjct: 664 EGCISLRELHLSIGDLKRLTYLNLGGCEQLQSFPPGMKFESLEVLYLDRCQNLKKFPKIH 723
Query: 179 S--CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236
HL+ L L I+ELPSSI L+++ L + +C LE ++FL + +
Sbjct: 724 GNMGHLKE-LYLNKSEIKELPSSIVYLASLEVLNLSNCSNLEKFPEIHGNMKFLRELHLE 782
Query: 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNF 296
C + ++ R S +K LPS +SL L++ C F
Sbjct: 783 GCSKFEKFSDTFTYMEHLRGLHLGESGIK--------ELPSSIGYLESLEILDLSYCSKF 834
Query: 297 ERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYIS--------- 347
E+ P+ GN++ L L +D TAI+ELP +G L L L LK C + E S
Sbjct: 835 EKFPEIKGNMKCLKELYLDNTAIKELPNSMGSLTSLEILSLKECLKFEKFSDIFTNMGLL 894
Query: 348 --------------SSIFKLKSVESIEISNCSNLKGFPEIP--------FCNIDGSGIER 385
+SI L+S+E + +S CSN + FPEI C ++ + I+
Sbjct: 895 RELYLRESGIKELPNSIGYLESLEILNLSYCSNFQKFPEIQGNLKCLKELC-LENTAIKE 953
Query: 386 IPSSV--------LKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALE 437
+P+ + L L+ CS E P L +L +D ++ LP +G+L L+
Sbjct: 954 LPNGIGCLQALESLALSGCSNFERFPE--IQMGKLWAL-FLDETPIKELPCSIGHLTRLK 1010
Query: 438 ELRVEG-TGIREVPKSLAQL-ALSKLKLKKCSSFES-----------------------L 472
L +E +R +P S+ L +L +L L CS+ E+ L
Sbjct: 1011 WLDLENCRNLRSLPNSICGLKSLERLSLNGCSNLEAFSEITEDMERLEHLFLRETGITEL 1070
Query: 473 PSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVPESLGQLS-SLE 530
PS + + L SLE+I+C+N + LP+ IG+L L L ++ T +R +P++L L L
Sbjct: 1071 PSLIGHLRGLESLELINCENLVALPNSIGSLTCLTTLRVRNCTKLRNLPDNLRSLQCCLL 1130
Query: 531 WLVLSDNNLQ--IIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRI 588
WL L NL IP L LS LVSL +S N++ IP + LS LK LF N+ +
Sbjct: 1131 WLDLGGCNLMEGEIPSDLWCLSLLVSLDVSENHIRCIPAGITQLSKLKA--LFMNHCPML 1188
Query: 589 PEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGWMKQ-------------- 634
E +PS T + + C L+ S ++ +K+
Sbjct: 1189 EEI-----GEVPSSLTVM----EAHGCPSLETETFSSLLWSSLLKRFKSPIQPEFFEPNF 1239
Query: 635 SVNGETYITK-SMYFPG-NEIPKWFRHQSTGSTISLKTPQPTGY--NKLMGFA-FCVVVA 689
++ + Y + S+ PG N IP+W HQ G +S++ P Y + +GF F V
Sbjct: 1240 FLDLDFYPQRFSILLPGSNGIPEWVSHQRMGCEVSIELPM-NWYEDDNFLGFVLFFHHVP 1298
Query: 690 CSVSECCRHESVEDDRKCNLFDVVCDRRSEGYD---------SYTSSYLGKISH-VESDH 739
EC E+ E + +SE + +Y +S+L H +SD
Sbjct: 1299 LDDDEC---ETTEGSIPHCELTISHGDQSERLEEISFYFKCKTYLASHLLSGKHCYDSDS 1355
Query: 740 --------VFLGSSIFAGENSCKRSDEFFFHI------------DRSCCEVKKCGIHFVH 779
+ E +R + F H D +C +VK CGIH ++
Sbjct: 1356 TPDPAIWVTYFPQIDIPSEYRSRRRNNFKXHFHTPIGVGSFKCGDNACFKVKSCGIHLLY 1415
Query: 780 AQRQ 783
AQ Q
Sbjct: 1416 AQDQ 1419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821370|emb|CAN67940.1| hypothetical protein VITISV_013693 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 261/886 (29%), Positives = 388/886 (43%), Gaps = 130/886 (14%)
Query: 7 EIQINPYTFSKMTELRLLK-FCG-----SKNKCMVHSLEGVPF-TELRYFEWHQFPLKTL 59
EIQ N FSKM +LRLLK +C ++ K V + F +LRY W + L +L
Sbjct: 500 EIQFNTKVFSKMKKLRLLKIYCNDHDGLTREKYKVLLPKDFQFPHDLRYLHWQRCTLTSL 559
Query: 60 NI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDL 118
+ ++L+ + + S + QLW + L LK IDL SK L K+P S NLE L+L
Sbjct: 560 PWNFYGKHLIEINLKSSNIKQLWKGNKCLEELKGIDLSNSKQLVKMPKFSSMPNLERLNL 619
Query: 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKM- 177
C+SL E HSSI L L L+L C+ L S P+S+ + L+ L L C NLK P++
Sbjct: 620 EGCTSLCELHSSIGDLKSLTYLNLAGCEQLRSFPSSMKFESLEVLYLNCCPNLKKFPEIH 679
Query: 178 TSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHR 237
+ L L GI+ELPSSI L+++ L + +C E ++FL + +
Sbjct: 680 GNMECLKELYLNESGIQELPSSIVYLASLEVLNLSNCSNFEKFPXIHGNMKFLRELYLEG 739
Query: 238 CPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE 297
CP + N T + L L+K E LPS +SL L+I C FE
Sbjct: 740 CPKFE-------NFPDTFTYMGHLRRLHLRKSGIKE-LPSSIGYLESLEILDISCCSKFE 791
Query: 298 RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYIS---------- 347
+ P+ GN++ L L + TAI+ELP +G L L L L+ C + E S
Sbjct: 792 KFPEIQGNMKCLKNLYLRXTAIQELPNSIGSLTSLEILSLEKCLKFEKFSDVFTNMGRLR 851
Query: 348 -------------SSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN 394
SI L+S+E++ +S CSN + FPEI G + + N
Sbjct: 852 ELCLHRSGIKELPGSIGYLESLENLNLSYCSNFEKFPEI-------QGNMKCLKELSLEN 904
Query: 395 KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA 454
+ ++ LP+S+ ++L SL + C LER P+ N+ L L ++ T I +P S+
Sbjct: 905 --TAIKELPNSIGRLQALESLTLSGCSNLERFPEIQKNMGNLWALFLDETAIEGLPYSVG 962
Query: 455 QLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG 513
L L L L C + +SLP+ + KSL L + C N + ++E L+ L ++
Sbjct: 963 HLTRLDHLNLDNCKNLKSLPNSICELKSLEGLSLNGCSNLEAFSEITEDMEQLERLFLRE 1022
Query: 514 TAIREVPESLGQLSSLEWLVLSD-NNLQIIPESLNQLSSLVSLKLSN-NNLERIPERLDP 571
T I E+P S+ L L+ L L + NL +P S+ L+ L SL + N L +P+ L
Sbjct: 1023 TGISELPSSIEHLRGLKSLELINCENLVALPNSIGNLTCLTSLHVRNCPKLHNLPDNLRS 1082
Query: 572 LS-SLKYLDLFENNL--DRIPEYLRSFP------------TSIPSEFTSLRLSVDLRNCL 616
L L LDL NL + IP L IP+ T L LR L
Sbjct: 1083 LQCCLTMLDLGGCNLMEEEIPSDLWCLSLLVFLNISENRMRCIPAGITQL---CKLRTLL 1139
Query: 617 KLDPNELSEIIKD-----GWMKQ----SVNGETYITK-----------------SMYFPG 650
++ + E+I + GW++ S+ ET + ++ PG
Sbjct: 1140 -INHCPMLEVIGELPSSLGWIEAHGCPSLETETSSSLLWSSLLKHLKSPIQQKFNIIIPG 1198
Query: 651 NE-IPKWFRHQSTGSTISLKTPQPTGY--NKLMGFA--FCVVVACSVSECCRHESV---- 701
+ IP+W HQ G +S++ P Y N L+GF F V EC R
Sbjct: 1199 SSGIPEWVSHQRMGCEVSVELPM-NWYEDNNLLGFVLFFHHVPLDDDDECVRTSGFIPHC 1257
Query: 702 -----EDDRKCNLFDVVCDRRSEGYD----SYTSSYL--GKISHVESDHVFLGSSIFAGE 750
D+ L D+ + Y SY S+ G S + +
Sbjct: 1258 KLAISHGDQSKRLDDIGFHPHCKTYSISGLSYGSTRYDSGSTSDPALWVTYFPQIGIPSK 1317
Query: 751 NSCKRSDEFFFHIDR-------SCCE-----VKKCGIHFVHAQRQR 784
++ + F H D +C E VK CGIH ++AQ Q+
Sbjct: 1318 YRSRKWNNFKAHFDNPVGNASFTCGENASFKVKSCGIHLIYAQDQK 1363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 184/536 (34%), Positives = 277/536 (51%), Gaps = 58/536 (10%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSK--NKCMVHSLEGVPF--TELRYFEWHQFPLKTLNI- 61
EI+++ F++M LRLLK S +KC VH G+ ELRY W +PL +L
Sbjct: 554 EIELSSTAFARMYNLRLLKIYNSAAGDKCTVHLPSGLESLSHELRYLHWDGYPLTSLPCN 613
Query: 62 LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC 121
+NLV L + SKV QLW QNL +LK ++L + +T LPDLS A+NLE L+L +C
Sbjct: 614 FRPQNLVELNLSSSKVKQLWRGDQNLGNLKDVNLSNCEHITFLPDLSKARNLERLNLQFC 673
Query: 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP----KM 177
SL + SSIQ+L+KL LDL CK L +LP+ I+S L+ L L GC+NLK P K+
Sbjct: 674 KSLVKFPSSIQHLDKLVDLDLRGCKRLINLPSRINSSCLETLNLSGCANLKKCPETAGKL 733
Query: 178 TSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHR 237
T +L T +EELP SI LS + L + +CK + N+ +I+ L+ L + I
Sbjct: 734 TYLNLNET------AVEELPQSIGELSGLVTLNLKNCKLVLNLPENIYLLKSLLIVDISG 787
Query: 238 CPNLQFLEMPSCNI-----DGTRSKEQPSS--------ELKLKKCPRPESLPSGQCMFKS 284
C ++ S NI +GT +E PSS L L C R ++LPS
Sbjct: 788 CSSISRFPDFSWNIRYLYLNGTAIEELPSSIGGLRELIYLDLVGCNRLKNLPSAVSKLGC 847
Query: 285 LTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELE 344
L L++ C + P N++ L +DGTAIRE+P + L L++L L+NC + E
Sbjct: 848 LEKLDLSGCSSITEFPKVSRNIR---ELYLDGTAIREIPSSIECLCELNELHLRNCKQFE 904
Query: 345 YISSSIFKLKSVESIEISNCSNLKGFPEI-------PFCNIDGSGIERIPSSV------- 390
+ SSI KLK + + +S C + FPE+ + ++ + I ++PS +
Sbjct: 905 ILPSSICKLKKLRRLNLSGCLQFRDFPEVLEPMVCLRYLYLEQTRITKLPSPIGNLKGLA 964
Query: 391 -LKLNKCSKLESLPSSLCMFKSLTSLEIIDCKK--------LERLPDELGNLEALEELRV 441
L++ C LE + + + S +DC + L +PD LG L +LE L +
Sbjct: 965 CLEVGNCKYLEDIHCFVGLQLSKRHRVDLDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDL 1024
Query: 442 EGTGIREVPKSLAQL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRL 496
G +R +P S+ +L L L L+ C +SLP + L+ L++ +C++ L
Sbjct: 1025 SGNNLRTIPISINKLFELQYLGLRNCKRLQSLPE---LPPRLSKLDVDNCQSLNYL 1077
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 221/718 (30%), Positives = 334/718 (46%), Gaps = 143/718 (19%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKFCGSKN--KCMVHSLEGVPF--TELRYFEWHQFPL 56
+SKI EI+++ +M +LRLLK S+ KC VH G+ ELRY W +PL
Sbjct: 535 VSKIR-EIELSSTALGRMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPL 593
Query: 57 KTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEI 115
+L + +NLV + + SKV +LW QNLV+LK ++L + +T LPDLS A+NLE
Sbjct: 594 TSLPSNFRPQNLVEINLSCSKVNRLWRGDQNLVNLKDVNLSNCEHITFLPDLSKARNLER 653
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L+L +C+SL + SSIQ+L++L LDL C+ L +LP+ I+S L+ L L GC+NLK P
Sbjct: 654 LNLQFCTSLVKVPSSIQHLDRLVDLDLRGCERLVNLPSRINSSCLETLNLSGCANLKKCP 713
Query: 176 ----KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLE 231
K+T +L T +EELP SI LS + L + +CK L N+ +++ L L
Sbjct: 714 ETARKLTYLNLNET------AVEELPQSIGELSGLVALNLKNCKLLVNLPENMYLLTSLL 767
Query: 232 SIRIHRCPNLQFLEMPSCNI-----DGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
+ I C ++ L S NI +GT +E PSS L+K L
Sbjct: 768 LVDISGCSSISRLPDFSRNIRYLYLNGTAIEELPSSIGDLRK----------------LI 811
Query: 287 SLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYI 346
L + C + P N++ L +DGTAIRE+P + L L +L L+NC + E +
Sbjct: 812 YLNLSGCSSITEFPKVSNNIK---ELYLDGTAIREIPSSIDCLFELVELHLRNCKQFEIL 868
Query: 347 SSSIFKLKSVESIEISNCSNLKGFPEI--PFCNIDGSGIERIPSSVLKLNKCSKLESLPS 404
SSI L+ +E + +S C + FPE+ P + +E +++ LPS
Sbjct: 869 PSSICTLRKLERLNLSGCLQFRDFPEVLEPMVCLRYLYLEE-----------TRITKLPS 917
Query: 405 SLCMFKSLTSLEIIDCKKLE--------RLPDELGNLEALEELRVEGTGIREVPKSLAQL 456
+ K L LE+ +CK L +L + +L+ L +L ++G I VP SL
Sbjct: 918 PIGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVPDSLG-- 975
Query: 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC--KNFMRLPDEIGNLEYLKVLTIKG- 513
L+SLE++D NF +P I L L+ L ++
Sbjct: 976 ------------------------CLSSLEVLDLSGNNFSTIPLSINKLSELQYLGLRNC 1011
Query: 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLS 573
+ +PE +LS L+ +DN ESLN L S S + N E I
Sbjct: 1012 KRLESLPELPPRLSKLD----ADN-----CESLNYLGSSSSTVVKGNIFEFI-------- 1054
Query: 574 SLKYLDLFEN--NLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGW 631
F N +L RI + L P RL ++L+++++
Sbjct: 1055 -------FTNCLSLCRINQIL-------PYALKKFRLYTK-------RLHQLTDVLEGAC 1093
Query: 632 MKQSVNGETYITKSMYFPGNEIPKWFRHQSTGSTISLKTPQPTGYNKLMGFAFCVVVA 689
S + PG P+W HQS GST++ + +K +GF+ C V+A
Sbjct: 1094 -------------SFFLPGGVSPQWLSHQSWGSTVTCQLSSHWANSKFLGFSLCAVIA 1138
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807789|ref|XP_002871778.1| hypothetical protein ARALYDRAFT_488633 [Arabidopsis lyrata subsp. lyrata] gi|297317615|gb|EFH48037.1| hypothetical protein ARALYDRAFT_488633 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 204/690 (29%), Positives = 321/690 (46%), Gaps = 109/690 (15%)
Query: 6 SEIQINPYTFSKMTELRLLKF--CGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTL-N 60
SE+ + F ++ L+LL F + VH G+ + +LRY W +PLKT+ +
Sbjct: 540 SEVFASDRAFEGLSNLKLLNFYDLSFDGETRVHLPNGLSYLPRKLRYLRWDGYPLKTMPS 599
Query: 61 ILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGY 120
E LV L M S + +LWD +Q L +LK++DL K L ++PDLS A NLE L+L Y
Sbjct: 600 RFCPEFLVELCMSNSDLEKLWDGIQPLTNLKKMDLSRCKYLVEIPDLSKATNLEELNLSY 659
Query: 121 CSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSC 180
C SL E SI+ L L + C L ++P I K L+ + + GCS+L + P+++
Sbjct: 660 CQSLVEVTPSIKNLKGLSCFYMTNCIQLKNIPIGITLKSLETVRMSGCSSLMHFPEISWN 719
Query: 181 HLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPN 240
R L L IEELPSSI LS + EL + C+RL + S + L L+S+
Sbjct: 720 TRR--LYLSSTKIEELPSSISRLSCLVELDMSDCQRLRTLPSYLRHLVSLKSL------- 770
Query: 241 LQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLP 300
N+DG C R E+LP SL +LE+ C N P
Sbjct: 771 ---------NLDG---------------CKRLENLPGTLQNLTSLETLEVSGCLNVNEFP 806
Query: 301 DELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360
N++ L I T+I E+P + L+ L L++ L+ + SI KL+S+E ++
Sbjct: 807 RVATNIEVLR---ISETSIEEIPARICNLSQLRSLDISENKRLKSLPLSISKLRSLEKLK 863
Query: 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDC 420
+S CS LES P +C S +D
Sbjct: 864 LSGCS--------------------------------VLESFPPEICQTMSCLRWFDLDR 891
Query: 421 KKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480
++ LP+ +GNL ALE L+ T IR P+S+A+ L++L++ + P L
Sbjct: 892 TSIKELPENIGNLVALEVLQASRTVIRRAPRSIAR--LTRLQVLAIGNSLYTPEGL---- 945
Query: 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540
L SL C R D L+ L++ + E+P S+G L +L + LS N+ +
Sbjct: 946 -LHSL----CPPLARFDD-------LRALSLSNMNMVEIPNSIGNLWNLLEIDLSGNSFE 993
Query: 541 IIPESLNQLSSLVSLKLSN-NNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSI 599
IP S+ +L+ L L L+N L+ +P+ L L ++ +N + F
Sbjct: 994 FIPASIKRLTRLNRLNLNNCQRLQALPDEL----PRGLLYIYIHNCTSLVSISGCFNQYC 1049
Query: 600 PSEFTSLRLSVDLRNCLKLDPNELSEIIKDGWMKQSVNGETYITKSMYFPGNEIPKWFRH 659
+F + NC KLD + ++I+ MK E+ + YFPG++IP F H
Sbjct: 1050 LRQFVA-------SNCYKLD--QAAQILIHCNMKL----ESAKPEHSYFPGSDIPSCFNH 1096
Query: 660 QSTGSTISLKTPQPTGYNKLMGFAFCVVVA 689
Q G +++++ PQ + ++GF+ C+++
Sbjct: 1097 QVMGPSLNIQLPQSESSSDILGFSACIMIG 1126
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 177/518 (34%), Positives = 273/518 (52%), Gaps = 56/518 (10%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKFCGSKN--KCMVHSLEGVPF--TELRYFEWHQFPL 56
+SKI EI+++ +M +LRLLK S+ KC VH G+ ELRY W +PL
Sbjct: 535 VSKIR-EIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPL 593
Query: 57 KTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEI 115
+L + +NLV + + SKV +LW QNLV+LK ++L + +T +PDLS A+NLE
Sbjct: 594 TSLPSNFRPQNLVEINLSCSKVNRLWRGHQNLVNLKDVNLSNCEHITFMPDLSKARNLER 653
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L+L +C+SL + SS+Q+L+KL LDL CK L +LP+ I+S L+ L + GC+NLK P
Sbjct: 654 LNLQFCTSLVKFPSSVQHLDKLVDLDLRGCKRLINLPSRINSSCLETLNVSGCANLKKCP 713
Query: 176 ----KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLE 231
K+T +L T +EELP SI L+ + L + +CK L N+ +++ L+ L
Sbjct: 714 ETARKLTYLNLNET------AVEELPQSIGELNGLVALNLKNCKLLVNLPENMYLLKSLL 767
Query: 232 SIRIHRCPNLQFLEMPSCNI-----DGTRSKEQPSS--------ELKLKKCPRPESLPSG 278
I C ++ L S NI +GT +E PSS L L C R ++LPS
Sbjct: 768 IADISGCSSISRLPDFSRNIRYLYLNGTAIEELPSSIGDLRELIYLDLGGCNRLKNLPSA 827
Query: 279 QCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELK 338
L L++ C N P ++ N + L ++GTAIRE+P + L L++L L+
Sbjct: 828 VSKLVCLEKLDLSGCSNITEFP-KVSN--TIKELYLNGTAIREIPSSIECLFELAELHLR 884
Query: 339 NCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI-------PFCNIDGSGIERIPSSV- 390
NC + E + SSI KL+ ++ + +S C + FPE+ + ++ + I ++PS +
Sbjct: 885 NCKQFEILPSSICKLRKLQRLNLSGCVQFRDFPEVLEPMVCLRYLYLEQTRITKLPSPIG 944
Query: 391 -------LKLNKCSKLESLPSSL-------CMFKSLTSLEIIDCKKLERLPDELGNLEAL 436
L++ C L + + C L L + C+ E +PD LG + +L
Sbjct: 945 NLKGLACLEVGNCQHLRDIECIVDLQLPERCKLDCLRKLNLDGCQIWE-VPDSLGLVSSL 1003
Query: 437 EELRVEGTGIREVPKSLAQL-ALSKLKLKKCSSFESLP 473
E L + G R +P S+ +L L L L+ C + ESLP
Sbjct: 1004 EVLDLSGNNFRSIPISINKLFELQYLGLRNCRNLESLP 1041
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | ||||||
| TAIR|locus:2174900 | 968 | AT5G40060 [Arabidopsis thalian | 0.518 | 0.420 | 0.321 | 5.1e-46 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.625 | 0.247 | 0.308 | 2.1e-39 | |
| TAIR|locus:2170408 | 1139 | AT5G46270 [Arabidopsis thalian | 0.440 | 0.303 | 0.345 | 3.7e-39 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.552 | 0.335 | 0.316 | 4.9e-38 | |
| TAIR|locus:2151491 | 1123 | AT5G46450 [Arabidopsis thalian | 0.482 | 0.337 | 0.321 | 1e-37 | |
| TAIR|locus:2151476 | 1168 | VICTR "VARIATION IN COMPOUND T | 0.494 | 0.332 | 0.322 | 3.8e-37 | |
| TAIR|locus:2151466 | 1353 | VICTL "VARIATION IN COMPOUND T | 0.494 | 0.286 | 0.322 | 2e-36 | |
| TAIR|locus:2115870 | 1234 | AT4G08450 [Arabidopsis thalian | 0.456 | 0.290 | 0.333 | 2e-36 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.494 | 0.318 | 0.312 | 2.2e-36 | |
| TAIR|locus:2170488 | 1205 | AT5G46260 [Arabidopsis thalian | 0.485 | 0.316 | 0.322 | 3.3e-36 |
| TAIR|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 5.1e-46, Sum P(2) = 5.1e-46
Identities = 141/439 (32%), Positives = 226/439 (51%)
Query: 1 MSKINSEIQINPYTFSKMTELRLL----KFCGSKNKCMVHSLEGVPFT--ELRYFEWHQF 54
+ +I+ E+ ++ F M LR L K S K +H E + +L+ W ++
Sbjct: 346 VDEIDHELNVHEKAFQGMRNLRFLNIYTKALMSGQKIRLHLPENFDYLPPKLKLLCWDKY 405
Query: 55 PLKTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNL 113
P++ L + ENLV LKM S++ +LW+ V +L LK +DL+ SK L ++PDLS+A NL
Sbjct: 406 PMRCLPSSFRPENLVKLKMQESELEKLWEGVGSLTCLKDMDLEKSKNLKEIPDLSMATNL 465
Query: 114 EILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKN 173
+ L+L YCSSL + SSIQ LNKL L+++ C +L +LP I+ K L RL LRGCS L+
Sbjct: 466 KTLNLKYCSSLVKISSSIQNLNKLTKLNMEGCTNLETLPAGINLKSLHRLDLRGCSRLRM 525
Query: 174 LPKMTSCHLRSTLPLLGVGIEELPSSI--KCLSNIGELLIYSCKRLENISSSIFKLQFLE 231
P +++ ++ S L L IEE PS++ K L ++ + S K E + ++ L
Sbjct: 526 FPDISN-NI-SVLFLDKTSIEEFPSNLHLKKLFDLSMQQMNSEKLWEGVQPLTCLMKMLS 583
Query: 232 SIRIHRCPNLQFLEMPS-----CNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
L ++PS C I + EL +++C ESLP+G FK L
Sbjct: 584 PPLAKNFNTLYLSDIPSLVELPCGIQNLKKL----MELSIRRCKNLESLPTG-ANFKYLD 638
Query: 287 SLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYI 346
L++ C PD + L ++ T I E+P + L+ L + C++L+Y+
Sbjct: 639 YLDLSGCSKLRSFPDISSTISCL---CLNRTGIEEVPSWIENFVRLTYLTMLECNKLKYV 695
Query: 347 SSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL 406
S +IFKLK ++ + S+C L E+ +CN I ++ + + SSL
Sbjct: 696 SLNIFKLKHLDKADFSDCGTLT---EVSWCN---KTISVAAATADNIQPKLLVSEASSSL 749
Query: 407 CMFKSLTSLEIIDCKKLER 425
C+ KS+ + I+C KL++
Sbjct: 750 CVQKSV--VRFINCFKLDQ 766
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 169/548 (30%), Positives = 260/548 (47%)
Query: 29 SKNKCM----VHSLEGV--PFTELRYFEWHQFPLKTL-NILHWENLVSLKMPGSKVTQLW 81
S N C V++L+ + F E+R W F L + + E LV L MP S LW
Sbjct: 598 SDNNCAHPDTVNALQDLNYQFQEIRLLHWINFRRLCLPSTFNPEFLVELNMPSSTCHTLW 657
Query: 82 DDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141
+ + L +LK +DL YS L +LPDLS A NLE L L YC SL + S + L KL+VL
Sbjct: 658 EGSKALRNLKWMDLSYSISLKELPDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLC 717
Query: 142 LDRCKSLTSLPTSIHSKY-LKRLVLRGCSNLKNLPKMTSCHLR-STLPLLGVGIEELPSS 199
L C S+ LP+ + L+ L L CS+L LP + L L + + +LP S
Sbjct: 718 LHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDLGCLRLLKLPLS 777
Query: 200 IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQ 259
I +N+ + ++ C L + + L+++ + C +L +E+PS +I G Q
Sbjct: 778 IVKFTNLKKFILNGCSSLVELPF-MGNATNLQNLDLGNCSSL--VELPS-SI-GNAINLQ 832
Query: 260 PSSELKLKKCPRPESLPSGQCMFKSLTSLEIID---CPNFERLPDELGNLQALNRLIIDG 316
L L C LPS + T+LEI+D C + +P +G++ L RL + G
Sbjct: 833 ---NLDLSNCSSLVKLPS---FIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSG 886
Query: 317 -TAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFP---- 371
+++ ELP +G ++ L L L NCS L + SS ++ +++S CS+L P
Sbjct: 887 CSSLVELPSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIG 946
Query: 372 ------EIPFCNIDGSGIERIPSSV--------LKLNKCSKLESLPSSLCMFKSLTSLEI 417
E+ CN S + ++PSS+ L L +C KLE+LPS++ + KSL L++
Sbjct: 947 NITNLQELNLCNC--SNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNINL-KSLERLDL 1003
Query: 418 IDCKKLERLPDELGNLEALEELRVEGTGIREVPXXXXXXXXXXXXXXXXXXXXXXPSRLY 477
DC + + P+ N+E L ++GT + EVP S +
Sbjct: 1004 TDCSQFKSFPEISTNIECLY---LDGTAVEEVPSSIKSWSRLTVLHMSYFEKLKEFS--H 1058
Query: 478 VSKSLTSLEI-IDCKNFMRLPDEIGNLEYLKVLTI-KGTAIREVPESLGQLS-----SLE 530
V +T LE D + EI L L++ K ++ ++PESL ++ SLE
Sbjct: 1059 VLDIITWLEFGEDIQEVAPWIKEISRLHGLRLYKCRKLLSLPQLPESLSIINAEGCESLE 1118
Query: 531 WLVLSDNN 538
L S NN
Sbjct: 1119 TLDCSYNN 1126
|
|
| TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 133/385 (34%), Positives = 206/385 (53%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSKN--KC----MVHSLEGVPFTELRYFEWHQFPLKTL- 59
E+ ++ F M+ LR L+ SKN K + SL+ +P L+ W FP++ +
Sbjct: 552 ELYVHESAFKGMSNLRFLEI-DSKNFGKAGRLYLPESLDYLP-PRLKLLCWPNFPMRCMP 609
Query: 60 NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLG 119
+ ENLV+LKMP SK+ +LW+ V +L LK +D+ S L ++PDLS+ NLEIL LG
Sbjct: 610 SNFRPENLVTLKMPNSKLHKLWEGVASLTCLKEMDMVGSSNLKEIPDLSMPTNLEILKLG 669
Query: 120 YCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTS 179
+C SL E SSI+ LNKL LD++ C SL LPT + K L L R CS L+ P+ S
Sbjct: 670 FCKSLVELPSSIRNLNKLLKLDMEFCHSLEILPTGFNLKSLDHLNFRYCSELRTFPEF-S 728
Query: 180 CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYS----CKRLENISSSIFKLQFL----E 231
++ S L L G IEE P+ L N+ EL + K+ + + L+ L +
Sbjct: 729 TNI-SVLMLFGTNIEEFPN----LENLVELSLSKEESDGKQWDGVKPLTPFLEMLSPTLK 783
Query: 232 SIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEII 291
S+++ P+L +E+PS + + KE L + C E+LP+G KSL L
Sbjct: 784 SLKLENIPSL--VELPSSFQNLNQLKE-----LSITYCRNLETLPTG-INLKSLNYLCFK 835
Query: 292 DCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIF 351
C P+ N+ LN ++ T I E+P + L+KL +++CS+L+ +S +I
Sbjct: 836 GCSQLRSFPEISTNISVLN---LEETGIEEVPWQIENFFNLTKLTMRSCSKLKCLSLNIP 892
Query: 352 KLKSVESIEISNCS-----NLKGFP 371
K+K++ ++ S+C+ NL G+P
Sbjct: 893 KMKTLWDVDFSDCAALTVVNLSGYP 917
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 4.9e-38, P = 4.9e-38
Identities = 151/477 (31%), Positives = 227/477 (47%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKF--CGSKNKCMVHSLEGVPFT--ELRYFEWHQFPL 56
+S+I SE+ + F ++ L+LL F + VH G+ + +LRY W +PL
Sbjct: 534 LSEI-SEVFASDRAFEGLSNLKLLNFYDLSFDGETRVHLPNGLSYLPRKLRYLRWDGYPL 592
Query: 57 KTLNILHW-ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEI 115
KT+ + E LV L M S + +LWD +Q L +LK++DL K L ++PDLS A NLE
Sbjct: 593 KTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEE 652
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L+L YC SL E SI+ L L L C L +P I K L+ + + GCS+LK+ P
Sbjct: 653 LNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFP 712
Query: 176 KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
++ S + R L L IEELPSSI LS + +L + C+RL + S + L L+S+ +
Sbjct: 713 EI-SWNTRR-LYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNL 770
Query: 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN 295
C L+ L N+ + E S L + + PR + S+ L I + +
Sbjct: 771 DGCRRLENLPDTLQNLTSLETLEV-SGCLNVNEFPRVST---------SIEVLRISET-S 819
Query: 296 FERLPDELGNLQALNRL-IIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLK 354
E +P + NL L L I + + LP + +L L KL+L CS LE I +
Sbjct: 820 IEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLEICQTM 879
Query: 355 S-VESIEISNCSNLKGFPE-------IPFCNIDGSGIERIPSSVLKLNKCSKL------- 399
S + ++ S +K PE + + I R P S+ +L + L
Sbjct: 880 SCLRWFDLDRTS-IKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFF 938
Query: 400 --ESLPSSLC----MFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP 450
E L SLC F L +L + + E +P+ +GNL L EL + G +P
Sbjct: 939 TPEGLLHSLCPPLSRFDDLRALSLSNMNMTE-IPNSIGNLWNLLELDLSGNNFEFIP 994
|
|
| TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 131/407 (32%), Positives = 211/407 (51%)
Query: 8 IQINPYTFSKMTELRLLKFCGSKNKCMV-HSLEGVPFT--ELRYFEWHQFPLKTL-NILH 63
+ I+ F M L L F + K + H EG +LR W ++PL+ + +
Sbjct: 544 LYIHESAFKGMRNLLFLNFYTKQKKDVTWHLSEGFDHLPPKLRLLSWEKYPLRCMPSNFR 603
Query: 64 WENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSS 123
ENLV L+M SK+ +LWD V +L L+ +DL+ S+ L ++PDLSLA NL+ LD+ C+S
Sbjct: 604 PENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKKLDVSNCTS 663
Query: 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLR 183
L E S+IQ LN+LE L ++RC++L +LP I+ + L L L GCS L++ P +++
Sbjct: 664 LVELSSTIQNLNQLEELQMERCENLENLPIGINLESLYCLNLNGCSKLRSFPDISTTI-- 721
Query: 184 STLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK-LQFLESIRIHRCPNLQ 242
S L L IEE P+ + L N+ L +Y K S ++K +Q L + P+L
Sbjct: 722 SELYLSETAIEEFPTELH-LENLYYLGLYDMK-----SEKLWKRVQPLTPLMTMLSPSLT 775
Query: 243 --FL-EMPSC-NIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFER 298
FL ++PS + + L + +C E+LP+G + + L L+ C
Sbjct: 776 KLFLSDIPSLVELPSSFQNLHNLEHLNIARCTNLETLPTGVNL-ELLEQLDFSGCSRLRS 834
Query: 299 LPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVES 358
PD N+ +L ++DGT I E+P + LS L + C+ L+ +S +I KL+ +E+
Sbjct: 835 FPDISTNIFSL---VLDGTGIEEVPWWIEDFYRLSFLSMIGCNNLQGVSLNISKLEKLET 891
Query: 359 IEISNCSNLK--GFPEIPFCNIDGSGIERIPSSV---LKLNKCSKLE 400
++ S+C L + IP + E I S + +K + C L+
Sbjct: 892 VDFSDCEALSHANWDTIP--SAVAMATENIHSKLPVCIKFSNCFNLD 936
|
|
| TAIR|locus:2151476 VICTR "VARIATION IN COMPOUND TRIGGERED ROOT growth response" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 134/416 (32%), Positives = 203/416 (48%)
Query: 2 SKINSEIQINPYTFSKMTELRLLKFCGS---KNKCMVHSLEGVPFTEL--RYFEWHQFPL 56
SK+ SE ++ F M L L + + VH E + + + + W +FPL
Sbjct: 540 SKV-SEFCVHENAFKGMGNLLFLDISSKTFIEEEVKVHLPEKINYYSVQPKQLIWDRFPL 598
Query: 57 KTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEIL 116
K + NLV L+M SK+ +LW+ + LK +D+ SK L ++PDLS A N+E L
Sbjct: 599 KCMPYTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKL 658
Query: 117 DLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPK 176
D G+C SL E SSI+ LNKL L+++ C L +LPT + K L L C L+ P+
Sbjct: 659 DFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPE 718
Query: 177 MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236
+ ++ S L L IEE PS++ N+ EL + EN K Q ++
Sbjct: 719 FAT-NI-SNLILAETSIEEYPSNLY-FKNVRELSMGKADSDEN------KCQGVKPFMPM 769
Query: 237 RCPNLQFLEMPSC-NIDGTRSKEQPSSELK---LKKCPRPESLPSGQCMFKSLTSLEIID 292
P L LE+ + N+ S Q + L+ + C ESLP+G +SL SL +
Sbjct: 770 LSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESLPTG-INLESLVSLNLFG 828
Query: 293 CPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK 352
C +R PD N++ L+ +D T I E+P + L+KL +K C EL+ +S +IFK
Sbjct: 829 CSRLKRFPDISTNIKYLD---LDQTGIEEVPWQIENFFNLTKLTMKGCRELKCVSLNIFK 885
Query: 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCM 408
LK + + SNC L ++ C SG+E + + + SLP S C+
Sbjct: 886 LKHLGEVSFSNCGALTRV-DLS-CY--PSGVEMMKADNADIVSEETTSSLPDS-CV 936
|
|
| TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 134/416 (32%), Positives = 203/416 (48%)
Query: 2 SKINSEIQINPYTFSKMTELRLLKFCGS---KNKCMVHSLEGVPFTEL--RYFEWHQFPL 56
SK+ SE ++ F M L L + + VH E + + + + W +FPL
Sbjct: 539 SKV-SEFCVHENAFKGMGNLLFLDISSKTFIEEEVKVHLPEKINYYSVQPKQLIWDRFPL 597
Query: 57 KTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEIL 116
K + NLV L+M SK+ +LW+ + LK +D+ SK L ++PDLS A N+E L
Sbjct: 598 KCMPYTFLRNLVKLEMHDSKLEKLWEGAMSFTCLKELDMWASKYLKEIPDLSKATNIEKL 657
Query: 117 DLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPK 176
D G+C SL E SSI+ LNKL L+++ C L +LPT + K L L C L+ P+
Sbjct: 658 DFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGFNLKSLDYLNFNECWKLRTFPE 717
Query: 177 MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236
+ ++ S L L IEE PS++ N+ EL + EN K Q ++
Sbjct: 718 FAT-NI-SNLILAETSIEEYPSNLY-FKNVRELSMGKADSDEN------KCQGVKPFMPM 768
Query: 237 RCPNLQFLEMPSC-NIDGTRSKEQPSSELK---LKKCPRPESLPSGQCMFKSLTSLEIID 292
P L LE+ + N+ S Q + L+ + C ESLP+G +SL SL +
Sbjct: 769 LSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESLPTG-INLESLVSLNLFG 827
Query: 293 CPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK 352
C +R PD N++ L+ +D T I E+P + L+KL +K C EL+ +S +IFK
Sbjct: 828 CSRLKRFPDISTNIKYLD---LDQTGIEEVPWQIENFFNLTKLTMKGCRELKCVSLNIFK 884
Query: 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCM 408
LK + + SNC L ++ C SG+E + + + SLP S C+
Sbjct: 885 LKHLGEVSFSNCGALTRV-DLS-CY--PSGVEMMKADNADIVSEETTSSLPDS-CV 935
|
|
| TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 2.0e-36, P = 2.0e-36
Identities = 130/390 (33%), Positives = 200/390 (51%)
Query: 1 MSKINSEIQINPYTFSKMTELRLLKFCGSKN------KCMV-HSLEGVPFTELRYFEWHQ 53
M +I E+ + F KM LR LK + N K ++ +P T LR W +
Sbjct: 539 MDEIE-ELHLQVDAFKKMLNLRFLKLYTNTNISEKEDKLLLPKEFNYLPNT-LRLLSWQR 596
Query: 54 FPLKTL-NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQN 112
FP++ + + + LV L MPGSK+ +LWD V L LK ++L S+ L + P+LSLA N
Sbjct: 597 FPMRCMPSDFFPKYLVKLLMPGSKLEKLWDGVMPLQCLKNMNLFGSENLKEFPNLSLATN 656
Query: 113 LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172
LE L LG+C SL E S+I LNKL L++ C +L P ++ K L LVL GCS LK
Sbjct: 657 LETLSLGFCLSLVEVPSTIGNLNKLTYLNMSGCHNLEKFPADVNLKSLSDLVLNGCSRLK 716
Query: 173 NLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIY---SCKRLENIS--SSIFKL 227
P ++S ++ S L L + +EE PS++ L N+ LLI+ S K + + +S+ +
Sbjct: 717 IFPAISS-NI-SELCLNSLAVEEFPSNLH-LENLVYLLIWGMTSVKLWDGVKVLTSLKTM 773
Query: 228 QFLESIRIHRCPNLQFLE-MPSCNIDGTRS-KEQPSS--------ELKLKKCPRPESLPS 277
+S + P+L + N++ S E PSS EL + C E+ P+
Sbjct: 774 HLRDSKNLKEIPDLSMASNLLILNLEQCISIVELPSSIRNLHNLIELDMSGCTNLETFPT 833
Query: 278 GQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLEL 337
G +SL + + C + PD N+ L+ + TAI E+P + + L L +
Sbjct: 834 G-INLQSLKRINLARCSRLKIFPDISTNISELD---LSQTAIEEVPLWIENFSKLKYLIM 889
Query: 338 KNCSELEYISSSIFKLKSVESIEISNCSNL 367
C+ LEY+ +I KLK ++S++ S+C L
Sbjct: 890 GKCNMLEYVFLNISKLKHLKSVDFSDCGIL 919
|
|
| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 133/425 (31%), Positives = 213/425 (50%)
Query: 2 SKINSEIQINPYTFSKMTELRLLKF----C--GSKNKCMVHSLEGVPF--TELRYFEWHQ 53
SK+ + ++++ F M L+ LK C G + + +H G+ F EL Y WH
Sbjct: 549 SKLRA-MRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFLPNELTYLHWHG 607
Query: 54 FPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQN 112
+PL+++ + +NLV LK+P S++ ++WDD +++ LK +DL +S L + L+ A N
Sbjct: 608 YPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLANAHN 667
Query: 113 LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172
LE L+L C+SL + S+I L KL L+L C SL SLP I ++ L+ L+L GCS+LK
Sbjct: 668 LERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCSSLK 727
Query: 173 NLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLES 232
P + S ++ L L G I+ LP SI+ + L + +CK+L+++SS ++KL+ L+
Sbjct: 728 KFP-LISENVEVLL-LDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQE 785
Query: 233 IRIHRCPNLQFL-----EMPSCNI---DGTRSKEQPS----SELKLKKCPRPESLPSGQC 280
+ + C L+ +M S I D T E P S +K S S
Sbjct: 786 LILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMMHLSNIKTFSLCGTSSHVSVSM 845
Query: 281 MFK--SLTSLEIIDCP----NFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSK 334
F +L + D + +LPD +G L +L L + G I LPE QL L
Sbjct: 846 FFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKW 905
Query: 335 LELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN 394
+LK C L+ S + ++++ ++ C +L+ P + ERI S + N
Sbjct: 906 FDLKFCKMLK--SLPVLP-QNLQYLDAHECESLETLAN-PLTPLTVG--ERIHSMFIFSN 959
Query: 395 KCSKL 399
C KL
Sbjct: 960 -CYKL 963
|
|
| TAIR|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 3.3e-36, P = 3.3e-36
Identities = 135/419 (32%), Positives = 208/419 (49%)
Query: 2 SKINSEIQINPYTFSKMTELRLLKF----CGSKNKC-MVHSLEGVPFTELRYFEWHQFPL 56
SKI+ E+ ++ F +M LR LK G +N+ + S + +P T L+ W +FP+
Sbjct: 538 SKID-ELCVHESAFKRMRNLRFLKIGTDIFGEENRLHLPESFDYLPPT-LKLLCWSEFPM 595
Query: 57 KTL--NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLE 114
+ + N +NLV+LKM SK+ +LW+ L LK +DL S L ++PDLS+A NLE
Sbjct: 596 RCMPSNFCP-KNLVTLKMTNSKLHKLWEGAVPLTCLKEMDLDGSVNLKEIPDLSMATNLE 654
Query: 115 ILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNL 174
L+ C SL E S IQ LNKL L++ C SL +LPT + K L R+ CS L+
Sbjct: 655 TLNFENCKSLVELPSFIQNLNKLLKLNMAFCNSLETLPTGFNLKSLNRIDFTKCSKLRTF 714
Query: 175 PKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLI----YSCKRLENISSSIFKL--- 227
P S ++ S L L G IEELPS++ L N+ +L I K+ E + + L
Sbjct: 715 PDF-STNI-SDLYLTGTNIEELPSNLH-LENLIDLRISKKEIDGKQWEGVMKPLKPLLAM 771
Query: 228 --QFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSL 285
L S+++ PNL +E+P C+ E L + C E+LP+G +SL
Sbjct: 772 LSPTLTSLQLQNIPNL--VELP-CSFQNLIQLEV----LDITNCRNLETLPTG-INLQSL 823
Query: 286 TSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY 345
SL C P+ N+ +LN ++ T I E+P + + + L L + CS L+
Sbjct: 824 DSLSFKGCSRLRSFPEISTNISSLN---LEETGIEEVPWWIDKFSNLGLLSMDRCSRLKC 880
Query: 346 ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNI----DGSGIERIPSSVLKLNKCSKLE 400
+S I KLK + ++ +C L ++ C I + + I+ + L C L+
Sbjct: 881 VSLHISKLKRLGKVDFKDCGALT-IVDLCGCPIGMEMEANNIDTVSKVKLDFRDCFNLD 938
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 785 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-53 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-22 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-12 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-12 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-10 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-09 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-08 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 1e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-06 | |
| PRK15387 | 788 | PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss | 7e-06 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 8e-04 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-53
Identities = 150/436 (34%), Positives = 225/436 (51%), Gaps = 49/436 (11%)
Query: 7 EIQINPYTFSKMTELRLLKF----CGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTL- 59
E+ I+ F M L LKF K + H EG + +LR W ++PL+ +
Sbjct: 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP 605
Query: 60 NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLG 119
+ ENLV L+M GSK+ +LWD V +L L+ IDL+ SK L ++PDLS+A NLE L L
Sbjct: 606 SNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665
Query: 120 YCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTS 179
CSSL E SSIQYLNKLE LD+ RC++L LPT I+ K L RL L GCS LK+ P +++
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST 725
Query: 180 CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239
S L L IEE PS+++ L N+ EL++ K E + + L L ++
Sbjct: 726 N--ISWLDLDETAIEEFPSNLR-LENLDELILCEMKS-EKLWERVQPLTPLMTMLSPSLT 781
Query: 240 NLQFLEMPSCNIDGTRSKEQPSS--------ELKLKKCPRPESLPSGQCMFKSLTSLEII 291
L ++PS E PSS L+++ C E+LP+G +SL SL++
Sbjct: 782 RLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLETLPTG-INLESLESLDLS 833
Query: 292 DCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIF 351
C PD N+ LN + T I E+P + + + LS L++ C+ L+ +S +I
Sbjct: 834 GCSRLRTFPDISTNISDLN---LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890
Query: 352 KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKS 411
KLK +E+++ S+C L + +GS S + + + LPS++C+
Sbjct: 891 KLKHLETVDFSDCGALTE------ASWNGS------PSEVAMATDNIHSKLPSTVCIN-- 936
Query: 412 LTSLEIIDCKKLERLP 427
I+C L++
Sbjct: 937 -----FINCFNLDQEA 947
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 122/444 (27%), Positives = 194/444 (43%), Gaps = 66/444 (14%)
Query: 297 ERLPDELGNLQALNRLIIDGTA-IRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS 355
E+L D + +L L + + G+ ++E+P+ L L L+L +CS L + SSI L
Sbjct: 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK 682
Query: 356 VESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSL 415
+E +++S C NL+ P +GI L L+ CS+L+S P + S
Sbjct: 683 LEDLDMSRCENLEILP---------TGINLKSLYRLNLSGCSRLKSFPD----ISTNISW 729
Query: 416 EIIDCKKLERLPDELGNLEALEELRV-----EGTGIREVPKS--LAQL--ALSKLKLKKC 466
+D +E P L LE L+EL + E R P + + L +L++L L
Sbjct: 730 LDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788
Query: 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVPESLGQ 525
S LPS + L LEI +C N LP I NLE L+ L + G + +R P+
Sbjct: 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTN 847
Query: 526 LSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN-NNLERIPERLDPLSSLKYLD----- 579
+S L LS ++ +P + + S+L L ++ NNL+R+ + L L+ +D
Sbjct: 848 ISD---LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904
Query: 580 -LFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGWMKQSVNG 638
L E + + P + +I S+ S + ++ NC LD L +QS
Sbjct: 905 ALTEASWNGSPSEVAMATDNIHSKLPS-TVCINFINCFNLDQEAL-------LQQQS--- 953
Query: 639 ETYITKSMYFPGNEIPKWFRHQSTG-STISLKTPQPTGYNKLMGFAFCVVV--------- 688
I K + G E+P +F H++TG S ++ + F C VV
Sbjct: 954 ---IFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIIS 1010
Query: 689 -ACSVSECCRHESVEDDRKCNLFD 711
+ + CCR DR N FD
Sbjct: 1011 VSFDIQVCCRFI----DRLGNHFD 1030
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 15/257 (5%)
Query: 346 ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSS 405
ISS+IF+L +++I +SN + L G IP I SS+ LN + +
Sbjct: 85 ISSAIFRLPYIQTINLSN-NQLSG--PIP------DDIFTTSSSLRYLNLSNNNFTGSIP 135
Query: 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQL-ALSKLKL 463
+L +L++ + +P+++G+ +L+ L + G + ++P SL L +L L L
Sbjct: 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLT-IKGTAIREVPES 522
+P L KSL + + +P EIG L L L + +P S
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255
Query: 523 LGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDL 580
LG L +L++L L N L IP S+ L L+SL LS+N+L IPE + L +L+ L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315
Query: 581 FENNLD-RIPEYLRSFP 596
F NN +IP L S P
Sbjct: 316 FSNNFTGKIPVALTSLP 332
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 7e-12
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 7/228 (3%)
Query: 383 IERIPSSVLKLNK-CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441
+E + + L LN + L LPSSL SL L L+ + L NL L L +
Sbjct: 42 LESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDL 100
Query: 442 EGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG 501
+R L +L ++ +P + + KS + LP +
Sbjct: 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR 160
Query: 502 NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNN 561
NL LK L + + ++P+ L LS+L L LS N + +P + LS+L L LSNN+
Sbjct: 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220
Query: 562 LERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLS 609
+ + L L +L L+L N L+ +PE + S +L LS
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLEDLPESI-----GNLSNLETLDLS 263
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 1e-10
Identities = 80/317 (25%), Positives = 122/317 (38%), Gaps = 46/317 (14%)
Query: 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI--- 361
L + + LP L +L L L S L+ + + L
Sbjct: 45 VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNR 104
Query: 362 --SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID 419
SN S L + ++D + I IP + L +L L++ D
Sbjct: 105 LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS---------------NLKELDLSD 149
Query: 420 CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479
K+E LP L NL L+ L + + ++PK L+ L S + L +S
Sbjct: 150 -NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL--------------SNLNNLDLS 194
Query: 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL 539
+ S LP EI L L+ L + +I E+ SL L +L L LS+N L
Sbjct: 195 GNKIS----------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244
Query: 540 QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSI 599
+ +PES+ LS+L +L LSNN + I L L++L+ LDL N+L + +
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLL 303
Query: 600 PSEFTSLRLSVDLRNCL 616
L L L
Sbjct: 304 ELLLNLLLTLKALELKL 320
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 481 SLTSLEIIDCK-NFM--RLPDEIGNLEYLKVLTIKGTA-IREVPESLGQLSSLEWLVLSD 536
S +SL+++D N + ++P+ + NL L+ LT+ + ++P LGQ+ SL+W+ L
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221
Query: 537 NNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNL-DRIPEYLR 593
NNL IP + L+SL L L NNL IP L L +L+YL L++N L IP +
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281
Query: 594 SFPTSIPSEFTSLRLS 609
S I + + LS
Sbjct: 282 SLQKLISLDLSDNSLS 297
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 99/345 (28%), Positives = 143/345 (41%), Gaps = 56/345 (16%)
Query: 299 LPDELGNLQALNRL-IIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVE 357
+P E+G L +LN L ++ +P LG L L L L I SIF L+ +
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIE-----------RIPS------------------ 388
S+++S+ S L G EIP I +E +IP
Sbjct: 288 SLDLSDNS-LSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344
Query: 389 --------------SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLE-RLPDELGNL 433
+VL L+ + +P LC +L L I+ LE +P LG
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL-ILFSNSLEGEIPKSLGAC 403
Query: 434 EALEELRVEGTGIR-EVPKSLAQLALSK-LKLKKCSSFESLPSRLYVSKSLTSLEIIDCK 491
+L +R++ E+P +L L L + + + SR + SL L + K
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 492 NFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQ-IIPESLNQL 549
F LPD G+ + L+ L + VP LG LS L L LS+N L IP+ L+
Sbjct: 464 FFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522
Query: 550 SSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPEYL 592
LVSL LS+N L +IP + L LDL +N L IP+ L
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 118/473 (24%), Positives = 196/473 (41%), Gaps = 103/473 (21%)
Query: 220 ISSSIFKLQFLESIRI--------------HRCPNLQFLEMPSCNIDGTRSKEQPSSELK 265
ISS+IF+L ++++I + +L++L + + N G
Sbjct: 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG------------ 132
Query: 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPN---FERLPDELGNLQALNRLIIDGTAIR-E 321
S+P G S+ +LE +D N +P+++G+ +L L + G + +
Sbjct: 133 --------SIPRG-----SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179
Query: 322 LPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP------- 374
+P L L L L L + + I + ++KS++ I + +NL G EIP
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY-NNLSG--EIPYEIGGLT 236
Query: 375 --------FCNIDGSGIERIPSSVLKLNKCSKL--------ESLPSSLCMFKSLTSLEII 418
+ N+ G IPSS+ L L +P S+ + L SL++
Sbjct: 237 SLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292
Query: 419 DCKKLERLPD---ELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLPS 474
D +P+ +L NLE L TG ++P +L L L L+L +P
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPK 350
Query: 475 RLYVSKSLTSLEIIDCKNFMRLPDEI---GNLEYLKVLTIKGTAIREVPESLGQLSSLEW 531
L +LT L++ +P+ + GNL K++ + E+P+SLG SL
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL--FKLILFSNSLEGEIPKSLGACRSLRR 408
Query: 532 LVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENN-LDRI 588
+ L DN+ +P +L + L +SNNNL+ RI R + SL+ L L N +
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468
Query: 589 PEYLRS------------FPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKD 629
P+ S F ++P + SL + LKL N+LS I D
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ----LKLSENKLSGEIPD 517
|
Length = 968 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 4e-09
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 422 KLERLPDELGNLEALEELRVEGT-GIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480
KLE+L D + +L L + + G+ ++E+P L LKL CSS LPS +
Sbjct: 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLN 681
Query: 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVPESLGQLSSLEWLVLSDNNL 539
L L++ C+N LP I NL+ L L + G + ++ P+ +S WL L + +
Sbjct: 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNIS---WLDLDETAI 737
Query: 540 QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPT-- 597
+ P +L +L +L L L E++ ER+ PL+ L + + +L R+ +L P+
Sbjct: 738 EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL--MTMLSPSLTRL--FLSDIPSLV 792
Query: 598 SIPSEFTSL 606
+PS +L
Sbjct: 793 ELPSSIQNL 801
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-08
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 528 SLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNL 585
+L+ L LS+N L +IP + L +L L LS NNL I L SL+ LDL NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 496 LPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLV 553
+P++I L +L+ + + G +IR +P SLG ++SLE L LS N+ IPESL QL+SL
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 554 SLKLSNNNLE-RIPERL 569
L L+ N+L R+P L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 1e-07
Identities = 73/258 (28%), Positives = 110/258 (42%), Gaps = 65/258 (25%)
Query: 361 ISNCSNLKGFPEIPFCNI-----DGSGIERIPSSV--------LKLNKCSKL-ESLPSSL 406
I + + LK PE NI + + + IP+++ L +N+ ++L E LPS+L
Sbjct: 205 ILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSAL 264
Query: 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466
+SL + K+ LP+ L E L L V IR +P
Sbjct: 265 ---QSL----DLFHNKISCLPENLP--EELRYLSVYDNSIRTLP---------------- 299
Query: 467 SSFESLPS---RLYV-SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES 522
LPS L V S SLT+L LP LK L A+ +P S
Sbjct: 300 ---AHLPSGITHLNVQSNSLTALP-------ETLPPG------LKTLEAGENALTSLPAS 343
Query: 523 LGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFE 582
L L+ L +S N + ++PE+L ++ +L +S N L +PE L ++L+ +
Sbjct: 344 LP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASR 397
Query: 583 NNLDRIPEYLRSFPTSIP 600
NNL R+PE L F P
Sbjct: 398 NNLVRLPESLPHFRGEGP 415
|
Length = 754 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 506 LKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNL 562
LK L + + +P + L +L+ L LS NNL I PE+ + L SL SL LS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 123/500 (24%), Positives = 203/500 (40%), Gaps = 85/500 (17%)
Query: 90 LKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSL 148
L+ +DL + L ++P D+ +L++LDLG + + +S+ L LE L L + +
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201
Query: 149 TSLPTSIHSKYLKRLVLRGCSNL-----KNLPKMTSC-HLRSTLPLLGVGIEELPSSIKC 202
+P + + + G +NL + +TS HL L +PSS+
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL---TGPIPSSLGN 258
Query: 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIR-------------IHRCPNLQFLEMPSC 249
L N+ L +Y K I SIF LQ L S+ + + NL+ L + S
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 250 NIDGTRSKEQPS----SELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGN 305
N G S L+L +P +LT L++ +P+ L +
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378
Query: 306 LQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNC 364
L +LI+ ++ E+P+ LG L ++ L++ S + S KL V ++ISN
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN- 437
Query: 365 SNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLE 424
+NL+G I+ + +L L + LP S F S K+LE
Sbjct: 438 NNLQG-------RINSRKWDMPSLQMLSLARNKFFGGLPDS---FGS---------KRLE 478
Query: 425 RLPDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLT 483
L L + G VP+ L L+ L +LKL + +P L K L
Sbjct: 479 NLD--------LSRNQFSGA----VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ-II 542
SL++ + + G ++P S ++ L L LS N L I
Sbjct: 527 SLDLSHNQ-------------------LSG----QIPASFSEMPVLSQLDLSQNQLSGEI 563
Query: 543 PESLNQLSSLVSLKLSNNNL 562
P++L + SLV + +S+N+L
Sbjct: 564 PKNLGNVESLVQVNISHNHL 583
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 519 VPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLK 576
+P + +L L+ + LS N+++ IP SL ++SL L LS N+ IPE L L+SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 577 YLDLFENNLD-RIP 589
L+L N+L R+P
Sbjct: 494 ILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 7e-06
Identities = 79/268 (29%), Positives = 115/268 (42%), Gaps = 59/268 (22%)
Query: 365 SNLKGFPEIP--FCNIDGSG-----IERIPSSVLKL----NKCSKLESLPSSLCMF---- 409
+NL P +P ++ SG + +P +L+L N + L +LPS LC
Sbjct: 232 NNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291
Query: 410 KSLTSLEII------------DCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLA 457
LTSL ++ L LP EL L A + T + +P L +L+
Sbjct: 292 NQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN---QLTSLPTLPSGLQELS 348
Query: 458 LSKLKLKKCSSFESLPSRLY----VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG 513
+S +L +S +LPS LY + LTSL LP LK L + G
Sbjct: 349 VSDNQL---ASLPTLPSELYKLWAYNNRLTSLPA--------LPSG------LKELIVSG 391
Query: 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLS 573
+ +P S L+ L++S N L +P S L+SL + N L R+PE L LS
Sbjct: 392 NRLTSLPV---LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLS 445
Query: 574 SLKYLDLFENNL-DRIPEYLRSFPTSIP 600
S ++L N L +R + LR TS P
Sbjct: 446 SETTVNLEGNPLSERTLQALREI-TSAP 472
|
Length = 788 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEY 591
L+L +N L+ +PE+L ++ +L ++N L IP L +++ ++L N + +PE
Sbjct: 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPER 259
Query: 592 LRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSE 625
L PS SL L + +CL P L E
Sbjct: 260 L-------PSALQSLDLFHNKISCL---PENLPE 283
|
Length = 754 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.77 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.74 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.71 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.66 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.5 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.48 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.22 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.2 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.18 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.15 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.07 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.02 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.01 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.99 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.98 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.87 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.85 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.84 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.65 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.65 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.62 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.56 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.49 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.47 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.46 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.43 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.35 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.32 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.24 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.14 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.14 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.14 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.12 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.1 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.93 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.91 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.8 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.69 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.68 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.49 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.33 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.2 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.79 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.44 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.39 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.28 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.24 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.15 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.82 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.38 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.12 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.84 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.38 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.25 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 91.17 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 90.66 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.97 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.94 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.94 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.9 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.9 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 88.76 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 88.28 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.74 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 84.12 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 83.64 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=456.58 Aligned_cols=174 Identities=48% Similarity=0.775 Sum_probs=155.0
Q ss_pred CCccccceecCHHHHhcccccceeeeecCCCc----cccccCCCCCC--CceEEEEecCCCCccccc-ccccCceEEEcC
Q 003936 1 MSKINSEIQINPYTFSKMTELRLLKFCGSKNK----CMVHSLEGVPF--TELRYFEWHQFPLKTLNI-LHWENLVSLKMP 73 (785)
Q Consensus 1 ~s~~~~~~~i~~~~f~~l~~Lr~L~l~~~~~~----~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~ 73 (785)
|+++ +++.++.++|.+|++|+.|.++++... ...++|+++.. .+||+|+|++++++.+|. +.+++|++|+|+
T Consensus 541 ~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~ 619 (1153)
T PLN03210 541 IDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ 619 (1153)
T ss_pred cCcc-ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc
Confidence 3556 578899999999999999999876421 23567888777 789999999999999999 889999999999
Q ss_pred CCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCC
Q 003936 74 GSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPT 153 (785)
Q Consensus 74 ~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~ 153 (785)
+++++.+|.++..+++|+.|+|+++...+.+|+++.+++|++|+|++|.....+|..++++++|+.|++++|..++.+|.
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 99999999999999999999999998888899999999999999999998999999999999999999999999999998
Q ss_pred ccccccccEEeccCCcCCCCCC
Q 003936 154 SIHSKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 154 ~~~l~~L~~L~ls~~~~l~~lp 175 (785)
.+++++|+.|++++|..++.+|
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred cCCCCCCCEEeCCCCCCccccc
Confidence 7788889999998886555544
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=467.08 Aligned_cols=502 Identities=22% Similarity=0.296 Sum_probs=340.6
Q ss_pred CceEEEEecCCCCcc-ccc--ccccCceEEEcCCCCcc-cccccc-cCCCCCcEEecCCCccccCCCCCccccccceecc
Q 003936 44 TELRYFEWHQFPLKT-LNI--LHWENLVSLKMPGSKVT-QLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDL 118 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~-lp~--~~l~~L~~L~L~~~~i~-~l~~~~-~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L 118 (785)
.+++.|+++++.+.. ++. ..+++|++|+|++|++. .+|..+ ..+++|++|+|++|.+...+|. +.+++|++|+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEEC
Confidence 356677777666652 333 56667777777777665 555553 3667777777777765554443 44666777777
Q ss_pred ccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--ccccccccccccccc-
Q 003936 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPLLGVGIE- 194 (785)
Q Consensus 119 s~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l~~~~i~- 194 (785)
++|.+.+.+|..++++++|++|++++|...+.+|..+ ++++|++|++++|.....+|.... .+|+ .+++++|.+.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSG 226 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCC
Confidence 7776666666667777777777777766666666666 667777777777665555555443 4566 6677776664
Q ss_pred ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCcc----CCcccccccCCC
Q 003936 195 ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE----QPSSELKLKKCP 270 (785)
Q Consensus 195 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~L~l~~~~ 270 (785)
.+|..++++++|++|++++|.+.+.+|..++++++|+.|+++++ .+.+..... .....+++++|.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-----------~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-----------KLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-----------eeeccCchhHhhccCcCEEECcCCe
Confidence 56667777777777777777777777766666666665555443 221110000 001112333333
Q ss_pred CCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc-cCCccccCccccceecccCccCCcccccc
Q 003936 271 RPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 271 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
..+.+|.++..+++|+.|++.+|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 33444444445555555555555555555555555555555555555554 44444555555555555555555555555
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcc
Q 003936 350 IFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE 429 (785)
Q Consensus 350 ~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~ 429 (785)
+..+++|+.|++++|. ....+|..+..+++|+.|++++|.+.+.+|..
T Consensus 376 ~~~~~~L~~L~l~~n~--------------------------------l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 376 LCSSGNLFKLILFSNS--------------------------------LEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred HhCcCCCCEEECcCCE--------------------------------ecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 5555555555555543 22345666778888888898888888888888
Q ss_pred cCCcccchhhhccCcccc-ccChhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc
Q 003936 430 LGNLEALEELRVEGTGIR-EVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK 507 (785)
Q Consensus 430 ~~~l~~L~~L~L~~n~i~-~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (785)
+..+++|+.|++++|.++ .+|..+..+. |+.|++++|...+.+|..+. .++|+.|++++|++.+..|..+.++++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccC
Confidence 888888888899888887 4454444443 88888888888888887654 48899999999999999999999999999
Q ss_pred eEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCC
Q 003936 508 VLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 508 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~ 584 (785)
.|++++|.+. .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 9999999987 568889999999999999999986 78889999999999999999985 79889999999999999999
Q ss_pred C-CCCccc
Q 003936 585 L-DRIPEY 591 (785)
Q Consensus 585 l-~~lp~~ 591 (785)
+ ..+|..
T Consensus 583 l~~~~p~~ 590 (968)
T PLN00113 583 LHGSLPST 590 (968)
T ss_pred ceeeCCCc
Confidence 4 467753
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=465.40 Aligned_cols=505 Identities=21% Similarity=0.262 Sum_probs=367.1
Q ss_pred HHHhcccccceeeeecCCCccccccCCCCC-C-CceEEEEecCCCCc-ccccccccCceEEEcCCCCcc-cccccccCCC
Q 003936 13 YTFSKMTELRLLKFCGSKNKCMVHSLEGVP-F-TELRYFEWHQFPLK-TLNILHWENLVSLKMPGSKVT-QLWDDVQNLV 88 (785)
Q Consensus 13 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~l~-~lp~~~l~~L~~L~L~~~~i~-~l~~~~~~l~ 88 (785)
.+|.++++|++|++++|.+. ..+|.++. . ++||+|++++|.+. .+|...+++|++|++++|.++ .+|..+++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence 45556666666666665543 23454443 2 55666666666554 233344556666666666554 4455556666
Q ss_pred CCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEecc
Q 003936 89 SLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLR 166 (785)
Q Consensus 89 ~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls 166 (785)
+|++|+|++|.+...+| .++.+++|++|++++|.+.+.+|..++++++|++|++++|.....+|..+ ++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 66666666665554454 35556666666666665555556566666666666666655555555555 55666666666
Q ss_pred CCcCCCCCCCccc--ccccccccccccccc-ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCcc
Q 003936 167 GCSNLKNLPKMTS--CHLRSTLPLLGVGIE-ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQF 243 (785)
Q Consensus 167 ~~~~l~~lp~~~~--~~L~~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~ 243 (785)
+|...+.+|.... .+|+ .|++++|.+. .+|.++.++++|++|++++|.+.+.+|..+.++++|+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~----------- 312 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI----------- 312 (968)
T ss_pred CceeccccChhHhCCCCCC-EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE-----------
Confidence 5544334443322 2344 4444444442 34444444455555555554444444444444433333
Q ss_pred ccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc-cC
Q 003936 244 LEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR-EL 322 (785)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~l 322 (785)
+++++|...+..|..+..+++|+.|++.+|...+.+|..++.+++|+.|++++|.+. .+
T Consensus 313 --------------------L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 313 --------------------LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred --------------------EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 334444555667777888999999999999988899999999999999999999998 67
Q ss_pred CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccC
Q 003936 323 PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL 402 (785)
Q Consensus 323 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l 402 (785)
|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|. ..+.+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~--------------------------------l~~~~ 420 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS--------------------------------FSGEL 420 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE--------------------------------eeeEC
Confidence 8888889999999999999999999999999999999999986 22345
Q ss_pred CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhhhcccccccCCCCccCCccccCCCC
Q 003936 403 PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKS 481 (785)
Q Consensus 403 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~ 481 (785)
|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+....++.|++++|...+.+|..+..+++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 667888999999999999999999988889999999999999987 6676665556999999999999999999999999
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 559 (785)
|+.|++++|.+.+.+|..+.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|++.+ +|..+..+++|+.|++++
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 999999999999999999999999999999999998 568899999999999999999985 899999999999999999
Q ss_pred CCCCC-CCCcCcCCCCCCEEeCCCCC
Q 003936 560 NNLER-IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 560 n~l~~-lp~~l~~l~~L~~L~l~~n~ 584 (785)
|++.. +|.. +.+..+....+.+|+
T Consensus 581 N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 581 NHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred CcceeeCCCc-chhcccChhhhcCCc
Confidence 99986 6753 445556666677776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=314.11 Aligned_cols=484 Identities=26% Similarity=0.328 Sum_probs=280.7
Q ss_pred CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n 121 (785)
..|..+.+++|.+..+.. ..+..|.+|++++|++.++|.+++.+..++.|+.++|++....+.++.+.+|+.|+.++|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 334444444444443333 444444444444444444444444444444444444443332224444444444444444
Q ss_pred cCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCcc-c-cccccccccccccccccCc
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMT-S-CHLRSTLPLLGVGIEELPS 198 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~-~-~~L~~~L~l~~~~i~~lp~ 198 (785)
. ..++|++++.+..|..|+..+| .+.++|.++ .+.+|..+++.+|. ++.+|+.. . ..|+ +++...|-++.+|.
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~-~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLK-HLDCNSNLLETLPP 200 (565)
T ss_pred c-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHH-hcccchhhhhcCCh
Confidence 3 3344444444444444444442 233333333 44444444444442 22222211 1 3344 45555555666666
Q ss_pred chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCC
Q 003936 199 SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSG 278 (785)
Q Consensus 199 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~ 278 (785)
.++.+.+|+.|++..|++.. +| .|+.+. .|+.+.++.|.+. .+|..
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs-----------~L~Elh~g~N~i~---------------------~lpae 246 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRF-LP-EFPGCS-----------LLKELHVGENQIE---------------------MLPAE 246 (565)
T ss_pred hhcchhhhHHHHhhhccccc-CC-CCCccH-----------HHHHHHhcccHHH---------------------hhHHH
Confidence 67777777777777665432 22 233333 3333333333331 11111
Q ss_pred c-cCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccC-----
Q 003936 279 Q-CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK----- 352 (785)
Q Consensus 279 ~-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----- 352 (785)
. .+++++..|++.++. ++..|+.+.-+.+|+.||+++|.|+.+|..+|++ .|+.|.+.+|++.+.-.+.+..
T Consensus 247 ~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred Hhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 1 134444444444432 3555666666666667777777777666666666 6666666666644321111100
Q ss_pred CCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC
Q 003936 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN 432 (785)
Q Consensus 353 l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 432 (785)
++-|+.- ..|.. ++..+ +-.....+. .-... .....+.+.+.|++++-+. ..+|+....
T Consensus 325 LKyLrs~--~~~dg-----------lS~se--~~~e~~~t~----~~~~~-~~~~~~i~tkiL~~s~~ql-t~VPdEVfe 383 (565)
T KOG0472|consen 325 LKYLRSK--IKDDG-----------LSQSE--GGTETAMTL----PSESF-PDIYAIITTKILDVSDKQL-TLVPDEVFE 383 (565)
T ss_pred HHHHHHh--hccCC-----------CCCCc--ccccccCCC----CCCcc-cchhhhhhhhhhccccccc-ccCCHHHHH
Confidence 0111100 00000 00000 000000000 00011 1234566788888888654 445544332
Q ss_pred ccc---chhhhccCccccccChhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccce
Q 003936 433 LEA---LEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKV 508 (785)
Q Consensus 433 l~~---L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 508 (785)
... ....++++|++.++|..+..+. +.+.-+..++..+.+|..+..+++|+.|++++|. +..+|..++.+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhhe
Confidence 222 6778999999999999887775 5555556667778888889999999999999876 4568888999999999
Q ss_pred EEecCeeccccCcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC
Q 003936 509 LTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 509 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
|+++.|++..+|..+..+..|+.+-.++|++..++.+ +.++.+|.+|||.+|.+..+|+.++++++|++|++.+|+++
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr- 541 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR- 541 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-
Confidence 9999999999999888888899999999999998765 99999999999999999999999999999999999999988
Q ss_pred Ccc
Q 003936 588 IPE 590 (785)
Q Consensus 588 lp~ 590 (785)
.|.
T Consensus 542 ~Pr 544 (565)
T KOG0472|consen 542 QPR 544 (565)
T ss_pred CCH
Confidence 553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=297.49 Aligned_cols=469 Identities=24% Similarity=0.322 Sum_probs=327.1
Q ss_pred cCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCC
Q 003936 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 65 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 144 (785)
..|..|.+++|.++.+.+.+.++..|.+|++.+|+.....|+++.+..++.|+.++|. ..++|+.++.+..|++|+.+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc
Confidence 4588899999999999889999999999999999987777799999999999999986 778999999999999999999
Q ss_pred CCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--cccccccccccccccccCcchhccccccceeccccccccccc
Q 003936 145 CKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS 221 (785)
Q Consensus 145 ~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 221 (785)
| ....+|..+ .+..|+.++..+| .+..+|+..+ ..+. .+.+.+|.++++|+..-+++.|++|+.-.| ..+.+|
T Consensus 124 n-~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~-~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP 199 (565)
T KOG0472|consen 124 N-ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLS-KLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLP 199 (565)
T ss_pred c-ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHH-HhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCC
Confidence 5 566666667 8999999998887 5666776665 4566 889999999999998888999999998877 456778
Q ss_pred hhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc
Q 003936 222 SSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301 (785)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 301 (785)
..++.+.+|+.|+++.+. + ..+| .+..+..|++|.+..+. ++.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nk-----------i---------------------~~lP-ef~gcs~L~Elh~g~N~-i~~lpa 245 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNK-----------I---------------------RFLP-EFPGCSLLKELHVGENQ-IEMLPA 245 (565)
T ss_pred hhhcchhhhHHHHhhhcc-----------c---------------------ccCC-CCCccHHHHHHHhcccH-HHhhHH
Confidence 888888888877776642 1 1222 22234444444443332 233333
Q ss_pred cc-cCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 302 EL-GNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 302 ~l-~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
.. .+++++..||++.|+++++|..+..+.+|++||+++|. ...+|.+++++ .|+.|.+.+|
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGN---------------- 307 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGN---------------- 307 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCC----------------
Confidence 32 25555555555555555555555555555555555543 22344444444 4444444444
Q ss_pred CCCcccCccccccCCCCCCccCCcccc--CCCCCcEEEecccc-CCCcCCcccCCcccchhhhccCccccccChhhhhhh
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPSSLC--MFKSLTSLEIIDCK-KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLA 457 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~~~~--~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~ 457 (785)
.+.++...++.-.--..++.+-+.+. ++.+=+.=.-+.-. ..+..| ....+.+.+.|++++-+++.+|..++...
T Consensus 308 -PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 308 -PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred -chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHh
Confidence 34433332210000000000000000 00000000000000 000111 12346678899999999999998877654
Q ss_pred ----hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEE
Q 003936 458 ----LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLV 533 (785)
Q Consensus 458 ----L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 533 (785)
....+++.|. +..+|..+..+..+.+.-+..++..+-+|..+..+++|..|+|++|.+..+|..++.+..|+.||
T Consensus 386 ~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred hhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 5666777664 44567666655666655555666667778888999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccccc
Q 003936 534 LSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLR 593 (785)
Q Consensus 534 Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~~~ 593 (785)
+|.|++..+|..+..+..|+.+-.++|++..+++. +.++.+|.+||+.+|.++++|+.++
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lg 525 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILG 525 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhc
Confidence 99999999999988888899998899999998655 9999999999999999999987643
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-33 Score=286.65 Aligned_cols=380 Identities=22% Similarity=0.300 Sum_probs=233.4
Q ss_pred CceEEEEecCCCCccccc-----ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCCCCcccc-cccee
Q 003936 44 TELRYFEWHQFPLKTLNI-----LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ-NLEIL 116 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-----~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~-~L~~L 116 (785)
-.-+.|+.++..+..+.. .-+..-+.|++++|++..+ +..|.++++|+.+++.+|. ++.+|.++... +|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEE
Confidence 456778888888876533 4455677899999999876 5668899999999999996 67788766554 59999
Q ss_pred ccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCCCCCCCcccccccccccccccccc
Q 003936 117 DLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE 194 (785)
Q Consensus 117 ~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~ 194 (785)
+|.+|.+...-.+.+..++.|+.|||+.| .+..+|..- .-.++++|+|++| .|+
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-----------------------~It 186 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-----------------------RIT 186 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-----------------------ccc
Confidence 99998877777778888999999999985 444444322 4456666666665 444
Q ss_pred ccCc-chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCC
Q 003936 195 ELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPE 273 (785)
Q Consensus 195 ~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~ 273 (785)
.+.. .|..+.+|..|.|++|.++...+..|.++++|+.|++..+ .|.-.
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-----------~iriv------------------- 236 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-----------RIRIV------------------- 236 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-----------ceeee-------------------
Confidence 4432 3556667777777777666555555555555555544432 11000
Q ss_pred CCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccC
Q 003936 274 SLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK 352 (785)
Q Consensus 274 ~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~ 352 (785)
-...|.++++|+.|.+..|.|..+.++ |-.+.++++|+|+.|+....-..++.+
T Consensus 237 -------------------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 237 -------------------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred -------------------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 011255566677777777777766554 556667777777776666555555666
Q ss_pred CCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC
Q 003936 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN 432 (785)
Q Consensus 353 l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 432 (785)
+++|+.|++++|. |.. --++++...++|+.|+|++|.+...-+..|..
T Consensus 292 Lt~L~~L~lS~Na-----------------I~r---------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 292 LTSLEQLDLSYNA-----------------IQR---------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred cchhhhhccchhh-----------------hhe---------------eecchhhhcccceeEeccccccccCChhHHHH
Confidence 6666666666553 110 01123344556666666666655555555666
Q ss_pred cccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC---CccccccccceE
Q 003936 433 LEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP---DEIGNLEYLKVL 509 (785)
Q Consensus 433 l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L 509 (785)
+..|++|.|++|++..+.+.. +..+++|+.|+|++|.+...+. ..|.++++|+.|
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~a----------------------f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGA----------------------FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred HHHhhhhcccccchHHHHhhH----------------------HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 666666666666655544322 1122666666666666654433 234556666666
Q ss_pred EecCeeccccC-cccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcc
Q 003936 510 TIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLS 558 (785)
Q Consensus 510 ~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 558 (785)
++.+|++..|| .+|.+++.|++|||.+|.|..| |.+|..+ .|++|.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 66666666664 3556666666666666666553 3445555 55555443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-34 Score=309.35 Aligned_cols=466 Identities=23% Similarity=0.232 Sum_probs=331.1
Q ss_pred cccCCCCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccc
Q 003936 35 VHSLEGVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLA 110 (785)
Q Consensus 35 ~~~~~~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l 110 (785)
..+|..+.. ..+..|++..|-+-..|- ...-+|+.|||++|.+...|..+..+.+|+.|+++.|.+.....+.+.+
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 455555555 447777777776655333 3333477777887777777777777777888888777543333357777
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccc
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLL 189 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~ 189 (785)
.+|++|+|.+|. ...+|.++..+++|++|+++.| ....+|..+ .++.++.+..++|.++..++... ++ .+++.
T Consensus 91 ~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---ik-~~~l~ 164 (1081)
T KOG0618|consen 91 RNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS---IK-KLDLR 164 (1081)
T ss_pred hcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc---ch-hhhhh
Confidence 778888877764 6677777778888888888873 455666666 67777777777775555555444 33 55666
Q ss_pred cccc-cccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccC
Q 003936 190 GVGI-EELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKK 268 (785)
Q Consensus 190 ~~~i-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~ 268 (785)
.+.+ ..++..+..+++ .|+|+.|.+. .++++.+++|+.+..+.|++....
T Consensus 165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~--------------~~dls~~~~l~~l~c~rn~ls~l~------------- 215 (1081)
T KOG0618|consen 165 LNVLGGSFLIDIYNLTH--QLDLRYNEME--------------VLDLSNLANLEVLHCERNQLSELE------------- 215 (1081)
T ss_pred hhhcccchhcchhhhhe--eeecccchhh--------------hhhhhhccchhhhhhhhcccceEE-------------
Confidence 6655 355666666666 6888887543 334455555555555554442211
Q ss_pred CCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccc
Q 003936 269 CPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISS 348 (785)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 348 (785)
..-++++.|+..+|...+..+ -..-.+|++++++.|+++.+|++++.+.+|+.+++.+|.+ ..+|.
T Consensus 216 -----------~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ 281 (1081)
T KOG0618|consen 216 -----------ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPL 281 (1081)
T ss_pred -----------ecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHH
Confidence 123567777777776653222 1224578999999999999999999999999999999876 77788
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc
Q 003936 349 SIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD 428 (785)
Q Consensus 349 ~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~ 428 (785)
.+...++|+.|.+.+| .++.+|.....+++|+.|++..|.+....+.
T Consensus 282 ri~~~~~L~~l~~~~n---------------------------------el~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYN---------------------------------ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred HHhhhhhHHHHHhhhh---------------------------------hhhhCCCcccccceeeeeeehhccccccchH
Confidence 8888888888888887 4566777777889999999999875443333
Q ss_pred ccCCccc-chhhhccCccccccChhhh--hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccc
Q 003936 429 ELGNLEA-LEELRVEGTGIREVPKSLA--QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505 (785)
Q Consensus 429 ~~~~l~~-L~~L~L~~n~i~~lp~~~~--~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 505 (785)
.+..... |+.|+.+.|.+...|..-. ...|+.|++.+|...+..-..+.+..+|+.|+|++|.+..-....+.+++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 3333333 7788888888887774322 234888888888888776666777788999999998865544456778888
Q ss_pred cceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCC--CCCcCcCCCCCCEEeCCCC
Q 003936 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER--IPERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 506 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n 583 (785)
|++|+|++|+++.+|..+..+..|++|...+|.+...| .+..++.|+.+|++.|+++. +|+...+ ++|++||+++|
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 99999999999999888888899999999999888888 78888899999999998886 4554443 78999999998
Q ss_pred C
Q 003936 584 N 584 (785)
Q Consensus 584 ~ 584 (785)
.
T Consensus 487 ~ 487 (1081)
T KOG0618|consen 487 T 487 (1081)
T ss_pred c
Confidence 7
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-33 Score=285.51 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=62.6
Q ss_pred eEEEEecCCCCc--cccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccc
Q 003936 46 LRYFEWHQFPLK--TLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC 121 (785)
Q Consensus 46 L~~L~l~~~~l~--~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n 121 (785)
.|-+|+++|.++ .+|. ..+.+++-|.|..+++..+|+.++.+.+|++|.+++|++.+...+++.++.|+.+++.+|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 444555666554 4555 556666666666666666666666666666666666665555555666666666666655
Q ss_pred cCc-cccccccccCCcccEEecCCCCCCCcCCCcc
Q 003936 122 SSL-TETHSSIQYLNKLEVLDLDRCKSLTSLPTSI 155 (785)
Q Consensus 122 ~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~ 155 (785)
+.. .-+|..+-.+..|..|||++ +.+++.|..+
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L 122 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNL 122 (1255)
T ss_pred ccccCCCCchhcccccceeeecch-hhhhhcchhh
Confidence 432 24555555666666666665 3344444433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-30 Score=267.48 Aligned_cols=392 Identities=17% Similarity=0.172 Sum_probs=296.1
Q ss_pred ceeeeecCCCcc--ccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccccccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKC--MVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls 96 (785)
+.|+.+++.+.. +..++ ++-...-+.|++++|.+..+.. .++++|+++++.+|.++.+|.......+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~-g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLK-GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccC-CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 556666655421 01112 2222667889999999987766 88999999999999999999988888999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~l 174 (785)
+|.+.+.-. ++..++.||.||||.|.+...--.+|..-.++++|+|++|.+...-...+ .+.+|-+|.|++
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr------- 206 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR------- 206 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-------
Confidence 998665544 58899999999999997555444567777899999999976554333333 555666555555
Q ss_pred CCccccccccccccccccccccCc-chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCC
Q 003936 175 PKMTSCHLRSTLPLLGVGIEELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDG 253 (785)
Q Consensus 175 p~~~~~~L~~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~ 253 (785)
|.++.+|. .|.++++|+.|+|..|++...--..|.++++|+.|.+. .|.+..
T Consensus 207 ----------------NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq-----------rN~I~k 259 (873)
T KOG4194|consen 207 ----------------NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ-----------RNDISK 259 (873)
T ss_pred ----------------CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh-----------hcCccc
Confidence 45566664 46669999999999987755434444455544444433 333311
Q ss_pred CCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCc-cccCcccc
Q 003936 254 TRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALL 332 (785)
Q Consensus 254 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L 332 (785)
. -...|..|.++++|+|+.|+++.+.. ++-++++|
T Consensus 260 L--------------------------------------------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 260 L--------------------------------------------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred c--------------------------------------------cCcceeeecccceeecccchhhhhhcccccccchh
Confidence 1 12347778999999999999998866 57889999
Q ss_pred ceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCC
Q 003936 333 SKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKS 411 (785)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~ 411 (785)
+.|++++|.+...-++++.-.++|+.|+|++|. +..++ .++..+..
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~---------------------------------i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR---------------------------------ITRLDEGSFRVLSQ 342 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccc---------------------------------cccCChhHHHHHHH
Confidence 999999999999999999899999999999885 22222 45677899
Q ss_pred CcEEEeccccCCCcCCcccCCcccchhhhccCccccc-cChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 412 LTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE-VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 412 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
|+.|+|++|++...-...|..+.+|++|+|++|.+.- +... ...+..+++|+.|.+.+|
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------------------a~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------------------AVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------------------hhhhccchhhhheeecCc
Confidence 9999999999877777788999999999999999873 3221 112334599999999999
Q ss_pred cCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccC------Cccccccccc
Q 003936 491 KNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSD------NNLQIIPESL 546 (785)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~------n~l~~lp~~l 546 (785)
++......+|.++++|++|+|.+|.|.+| |.+|..+ .|++|.++. |++.-++.++
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 98887778999999999999999999998 8889888 899987654 5555555543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-32 Score=295.75 Aligned_cols=470 Identities=23% Similarity=0.261 Sum_probs=327.1
Q ss_pred EEecCCCCccccc--ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCCCCccccccceeccccccCcc
Q 003936 49 FEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 49 L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 125 (785)
+|.+...+.-||. ..-..+..|+++.|.+-..|-. +.+..+|+.|||++|++..-.-.+..+.+|+.|+++.|. +.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-Hh
Confidence 5677788888888 5556699999999988776633 445566999999999754433378999999999999985 77
Q ss_pred ccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc-c-ccccccccccc-cccccCcchh
Q 003936 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS-C-HLRSTLPLLGV-GIEELPSSIK 201 (785)
Q Consensus 126 ~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~-~-~L~~~L~l~~~-~i~~lp~~l~ 201 (785)
..|.+..++++|++|+|.+ +.+..+|..+ .+++|+.|++++|. ...+|.... . .+. .+..++| .+..++..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~-~~~~s~N~~~~~lg~~-- 156 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEE-ELAASNNEKIQRLGQT-- 156 (1081)
T ss_pred hCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHH-HHhhhcchhhhhhccc--
Confidence 8889999999999999998 6788999888 89999999999873 444443322 1 111 3333333 11111111
Q ss_pred ccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccC
Q 003936 202 CLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCM 281 (785)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~ 281 (785)
. .+.+++..+.+.+.++..+..+.. .| ++..|.+.. .....
T Consensus 157 --~-ik~~~l~~n~l~~~~~~~i~~l~~--~l-----------dLr~N~~~~-----------------------~dls~ 197 (1081)
T KOG0618|consen 157 --S-IKKLDLRLNVLGGSFLIDIYNLTH--QL-----------DLRYNEMEV-----------------------LDLSN 197 (1081)
T ss_pred --c-chhhhhhhhhcccchhcchhhhhe--ee-----------ecccchhhh-----------------------hhhhh
Confidence 1 344444444444333333333222 22 223332210 01112
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
+.+|+.|....+.... .--.-++|+.|+.+.|.++.+.. -....+|++++++.+++ ..+|+++..+.+|+.+..
T Consensus 198 ~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSE----LEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNA 271 (1081)
T ss_pred ccchhhhhhhhcccce----EEecCcchheeeeccCcceeecc-ccccccceeeecchhhh-hcchHHHHhcccceEecc
Confidence 3333333333222111 11123457777777777663322 12345778888888654 445577777888888777
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhc
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L 441 (785)
.+| .+..+|..+...++|+.|.+..|. .+.+|......+.|++|+|
T Consensus 272 n~N---------------------------------~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 272 NHN---------------------------------RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cch---------------------------------hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence 776 345667777788899999999986 5677887888999999999
Q ss_pred cCccccccChhhhhhh---hcccccccCCCCccCC-ccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc
Q 003936 442 EGTGIREVPKSLAQLA---LSKLKLKKCSSFESLP-SRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR 517 (785)
Q Consensus 442 ~~n~i~~lp~~~~~l~---L~~L~l~~~~~~~~lp-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 517 (785)
..|.+..+|..+.... +..+..+.++. ..+| ..-...+.|+.|.+.+|.+.......+.+..+||.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 9999999998554433 34444443333 3333 23334578999999999999888778999999999999999999
Q ss_pred ccCc-ccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC--Ccccccc
Q 003936 518 EVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR--IPEYLRS 594 (785)
Q Consensus 518 ~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~--lp~~~~~ 594 (785)
++|+ .+.++..|++|+||+|+++.+|+.+..+..|++|...+|++..+| .+.+++.|+.+|++.|.|+. +|+.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~--- 472 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA--- 472 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh---
Confidence 9985 568899999999999999999999999999999999999999999 78999999999999999874 5544
Q ss_pred CCCCCC-cccccccceeee
Q 003936 595 FPTSIP-SEFTSLRLSVDL 612 (785)
Q Consensus 595 ~~~~ip-~~l~~l~~~l~~ 612 (785)
.| +.|++|+++.+.
T Consensus 473 ----~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 ----LPSPNLKYLDLSGNT 487 (1081)
T ss_pred ----CCCcccceeeccCCc
Confidence 27 899996554443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-31 Score=274.22 Aligned_cols=356 Identities=25% Similarity=0.359 Sum_probs=243.7
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEec
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDL 95 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 95 (785)
+-.|-.++++|.+.+ ..+|..+.. +.++.|.|....+..+|. ..+.+|++|.+.+|++..+-..+..++.||.+++
T Consensus 7 pFVrGvDfsgNDFsg-~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSG-DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCC-CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 345667889988765 578888888 999999999999999999 9999999999999999999888999999999999
Q ss_pred CCCccccC-CC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCC
Q 003936 96 KYSKLLTK-LP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 96 s~n~~~~~-~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l 171 (785)
..|.+... +| ++-.+..|..||||+|+ +.+.|..+...+++-.|+|++| .+..+|..+ +++.|-.||+|+|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N--- 160 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN--- 160 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc---
Confidence 99976433 45 79999999999999997 8889999999999999999994 566777655 6666666666654
Q ss_pred CCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCccc
Q 003936 172 KNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNI 251 (785)
Q Consensus 172 ~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~ 251 (785)
++..+|..+..+.+|++|.|++|++... .
T Consensus 161 --------------------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hf------Q------------------------- 189 (1255)
T KOG0444|consen 161 --------------------RLEMLPPQIRRLSMLQTLKLSNNPLNHF------Q------------------------- 189 (1255)
T ss_pred --------------------hhhhcCHHHHHHhhhhhhhcCCChhhHH------H-------------------------
Confidence 3455556666666666666666643210 0
Q ss_pred CCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc--cCCccccCc
Q 003936 252 DGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR--ELPEGLGQL 329 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l 329 (785)
+..+| .+++|+.|.+++++-+ .+|.++..+
T Consensus 190 --------------------------------------------LrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 190 --------------------------------------------LRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred --------------------------------------------HhcCc----cchhhhhhhcccccchhhcCCCchhhh
Confidence 01111 2555666677665443 556655556
Q ss_pred cccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC
Q 003936 330 ALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF 409 (785)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l 409 (785)
.+|..++++.|+ +..+|..+..+
T Consensus 222 ~NL~dvDlS~N~---------------------------------------------------------Lp~vPecly~l 244 (1255)
T KOG0444|consen 222 HNLRDVDLSENN---------------------------------------------------------LPIVPECLYKL 244 (1255)
T ss_pred hhhhhccccccC---------------------------------------------------------CCcchHHHhhh
Confidence 666665555532 33444455556
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++|+.|++++|.+.+ +....+...+|++|+++.|+++.+|..+..+ +.|+.|.+.+
T Consensus 245 ~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-----------------------~kL~kLy~n~ 300 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKL-----------------------TKLTKLYANN 300 (1255)
T ss_pred hhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhh-----------------------HHHHHHHhcc
Confidence 666666666665432 3333445567777777777777777766665 4555555555
Q ss_pred CcCc-ccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 490 CKNF-MRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 490 ~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
|++. .-+|+.++.+..|+++..++|.+.-+|+.+..+..|+.|.|+.|.+..+|+++.-++.|+.||+..|
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCC
Confidence 5542 2345555555555555555555555566666666666666666666666666655666666666555
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=255.28 Aligned_cols=317 Identities=26% Similarity=0.385 Sum_probs=264.3
Q ss_pred ecCHHHHhcc-cccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc--ccccCceEEEcCCCC-cccccccc
Q 003936 9 QINPYTFSKM-TELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSK-VTQLWDDV 84 (785)
Q Consensus 9 ~i~~~~f~~l-~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~-i~~l~~~~ 84 (785)
+++ +.|..+ .+||.|.+.++.+ ..+|..+...+|+.|++.++.+..++. ..+++|+.|+|+++. +..+| .+
T Consensus 579 ~lp-~~~~~lp~~Lr~L~~~~~~l---~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 579 HLP-EGFDYLPPKLRLLRWDKYPL---RCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ecC-cchhhcCcccEEEEecCCCC---CCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 344 345555 5799999999887 678888766999999999999999988 789999999999875 66776 48
Q ss_pred cCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCccccccccEE
Q 003936 85 QNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRL 163 (785)
Q Consensus 85 ~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L 163 (785)
..+++|+.|+|++|.....+| .+..+++|+.|++++|...+.+|..+ ++++|++|++++|..+..+|.. ..+|++|
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L 730 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWL 730 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCee
Confidence 889999999999998888888 58999999999999999888998876 7999999999999988888753 4689999
Q ss_pred eccCCcCCCCCCCccc-cccccccccccccccccCc--------chhccccccceeccccccccccchhhhccccccccc
Q 003936 164 VLRGCSNLKNLPKMTS-CHLRSTLPLLGVGIEELPS--------SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIR 234 (785)
Q Consensus 164 ~ls~~~~l~~lp~~~~-~~L~~~L~l~~~~i~~lp~--------~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 234 (785)
++++|. +..+|.... .+|+ .|.+.++....++. .....++|+.|++++|.....+|..++++++|+.|+
T Consensus 731 ~L~~n~-i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 731 DLDETA-IEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred ecCCCc-cccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 999885 677776543 5566 67776644333322 123357899999999999999999999999999999
Q ss_pred ccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeec
Q 003936 235 IHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLII 314 (785)
Q Consensus 235 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L 314 (785)
+++|.+++.+ |... .+++|+.|++.+|..+..+|.. .++|+.|++
T Consensus 809 Ls~C~~L~~L-------------------------------P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 809 IENCINLETL-------------------------------PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred CCCCCCcCee-------------------------------CCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 9998777543 2222 4789999999999998888764 468999999
Q ss_pred cCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCC
Q 003936 315 DGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGF 370 (785)
Q Consensus 315 ~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 370 (785)
++|.++.+|.+++.+++|++|++++|+.+..+|.....+++|+.+++++|..++.+
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999977654
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-19 Score=198.86 Aligned_cols=96 Identities=33% Similarity=0.357 Sum_probs=56.4
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.++.+|... .+|+.|++++|
T Consensus 363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~N 432 (788)
T PRK15387 363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRN 432 (788)
T ss_pred ccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccC
Confidence 44445555554432 3322 23456666666666666542 245666677777666666432 34566677777
Q ss_pred CCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 561 NLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 561 ~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+++.+|..+..+++|+.|++++|+|+
T Consensus 433 qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 433 QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cccccChHHhhccCCCeEECCCCCCC
Confidence 77667766666677777777777654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=180.28 Aligned_cols=284 Identities=14% Similarity=0.089 Sum_probs=167.9
Q ss_pred EEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCcc
Q 003936 48 YFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 48 ~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~ 125 (785)
.++.++-.+..+|..-++.-++++|..|.|+.+|.+ |+.+++||.|||++|.+..+.| .|.++.+|-.|-+.++..+.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 345555566666665555667777777777777654 6777777777777777666666 36777776666665532344
Q ss_pred ccc-cccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCc-chhc
Q 003936 126 ETH-SSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPS-SIKC 202 (785)
Q Consensus 126 ~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~-~l~~ 202 (785)
.+| ..|+.|..|+.|.+.-|...-.....+ .+++|..|.+..| .++.++. .+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-----------------------~~q~i~~~tf~~ 186 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-----------------------KIQSICKGTFQG 186 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-----------------------hhhhhccccccc
Confidence 443 346677777776666543332222223 4555554444443 3333333 3444
Q ss_pred cccccceecccccccc------------ccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCccc----ccc
Q 003936 203 LSNIGELLIYSCKRLE------------NISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSE----LKL 266 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~------------~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----L~l 266 (785)
+..++++.+..|.+.. ..+..++.++...... +.+.++.......+.... -.+
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r-----------l~~~Ri~q~~a~kf~c~~esl~s~~ 255 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR-----------LYYKRINQEDARKFLCSLESLPSRL 255 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH-----------HHHHHhcccchhhhhhhHHhHHHhh
Confidence 5555555555544211 1111111111111111 111111111111110000 001
Q ss_pred c-CCCCCCCCCC-CccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCC
Q 003936 267 K-KCPRPESLPS-GQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSEL 343 (785)
Q Consensus 267 ~-~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~ 343 (785)
. .|.....-|. .+..+++|++|++++|.....-+.+|.....+++|.|..|++..+... |.++..|+.|+|.+|++.
T Consensus 256 ~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 256 SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 1 1111111121 255689999999999988878888999999999999999999977664 788999999999999999
Q ss_pred ccccccccCCCCCCEEEeeCCC
Q 003936 344 EYISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 344 ~~~~~~~~~l~~L~~L~l~~~~ 365 (785)
...|..|..+.+|.+|.+-.|+
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EEecccccccceeeeeehccCc
Confidence 9999999999999999998887
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=188.16 Aligned_cols=111 Identities=23% Similarity=0.141 Sum_probs=61.5
Q ss_pred ceEEEEecCCCCcccccccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCc
Q 003936 45 ELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSL 124 (785)
Q Consensus 45 ~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~ 124 (785)
.-..|+++++.++++|..-..+|+.|++.+|+++.+|.. .++|++|+|++|++. .+|.+ .++|+.|++++|. +
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-L 274 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-h
Confidence 345667777777766662234677777777777766642 466677777776543 33432 3466666666665 3
Q ss_pred cccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCC
Q 003936 125 TETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC 168 (785)
Q Consensus 125 ~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~ 168 (785)
..+|... .+|+.|++++| .++.+|. ..++|+.|++++|
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N 312 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN 312 (788)
T ss_pred hhhhhch---hhcCEEECcCC-ccccccc--cccccceeECCCC
Confidence 3344322 34556666664 3344443 2244555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-18 Score=193.31 Aligned_cols=246 Identities=27% Similarity=0.372 Sum_probs=156.4
Q ss_pred CCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeC
Q 003936 284 SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISN 363 (785)
Q Consensus 284 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 363 (785)
+.+.|++.++. +..+|..+ .+.|+.|++++|.++.+|..+. ++|++|++++|.+. .+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCC-cCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 45566665543 34555544 2467777887787777776543 47777777776644 4554332 3566666666
Q ss_pred CCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccC
Q 003936 364 CSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEG 443 (785)
Q Consensus 364 ~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~ 443 (785)
|. + ..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++
T Consensus 251 N~-----------------L----------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 251 NR-----------------I----------------TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred Cc-----------------c----------------CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 63 1 12222221 35666666666544 3454332 3566666666
Q ss_pred ccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCccc
Q 003936 444 TGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523 (785)
Q Consensus 444 n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~ 523 (785)
|.++.+|..+. ..++.|++++|... .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|.++.+|..+
T Consensus 293 N~Lt~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 293 NSIRTLPAHLP-SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred CccccCcccch-hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh
Confidence 66666664432 13556666655433 3443332 678888888887654 555442 68888888888888887655
Q ss_pred CCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCc----CCCCCCEEeCCCCCCC
Q 003936 524 GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLD----PLSSLKYLDLFENNLD 586 (785)
Q Consensus 524 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~----~l~~L~~L~l~~n~l~ 586 (785)
.++|+.|+|++|+++.+|..+. .+|+.|++++|+++.+|..+. .++.+..|++.+|++.
T Consensus 366 --p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 --PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3688888888888888887654 368888888888888776543 3477888888888864
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-19 Score=175.03 Aligned_cols=413 Identities=18% Similarity=0.196 Sum_probs=232.4
Q ss_pred EEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCC
Q 003936 69 SLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 69 ~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
..+.++-.++.+|..+. +.-..++|..|.+....+ .|+.+++|+.|||++|.+...-|+.|..++.|..|-+-+++.
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 45667777888886654 567788999998655555 599999999999999998888899999999999988888788
Q ss_pred CCcCCCcc--ccccccEEeccCCcCCCCCCCccccccccccccccccccccC-cchhccccccceeccccccccccchhh
Q 003936 148 LTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSI 224 (785)
Q Consensus 148 ~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l 224 (785)
++.+|... ++..|+.|.+.-| .+.-++ ..+..+++|..|.+.+|.+...-...+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan-----------------------~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNAN-----------------------HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChh-----------------------hhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 88888776 7777777776654 222222 356778889999999887766655677
Q ss_pred hcccccccccccCCCC-----Ccccc--CCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC
Q 003936 225 FKLQFLESIRIHRCPN-----LQFLE--MPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE 297 (785)
Q Consensus 225 ~~l~~L~~L~l~~~~~-----L~~L~--l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 297 (785)
..+..++.+.+...+- |+.+. +..+. ..++.+.......+.+... .
T Consensus 185 ~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~--------------------------ietsgarc~~p~rl~~~Ri-~ 237 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP--------------------------IETSGARCVSPYRLYYKRI-N 237 (498)
T ss_pred cchhccchHhhhcCccccccccchhhhHHhhch--------------------------hhcccceecchHHHHHHHh-c
Confidence 7788888777766542 21110 00000 0111111111111110000 0
Q ss_pred CCC-ccccC-ccccc-eeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCC
Q 003936 298 RLP-DELGN-LQALN-RLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI 373 (785)
Q Consensus 298 ~lp-~~l~~-l~~L~-~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l 373 (785)
.+. ..|.. ...+. .+....+.....|. .|..+++|+.|++++|.+.+.-+.+|..+..+++|.+..|+
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-------- 309 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-------- 309 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch--------
Confidence 000 00000 00010 00111111122232 25666666667777666666666666666666666666653
Q ss_pred ceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-----
Q 003936 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR----- 447 (785)
Q Consensus 374 ~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~----- 447 (785)
++.+. ..|.++..|+.|++.+|++....|.+|..+.+|.+|.+-+|.+-
T Consensus 310 -------------------------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 310 -------------------------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred -------------------------HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 11111 23556677777888888777777777777777887777766553
Q ss_pred -ccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc---cCCCccc---------ccccc-ceEEecC
Q 003936 448 -EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM---RLPDEIG---------NLEYL-KVLTIKG 513 (785)
Q Consensus 448 -~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~---~~~~~~~---------~l~~L-~~L~L~~ 513 (785)
-+-+++..- ...+..|- ..-..++.+.+++..+.. ..|+..+ ..+-+ ++..-++
T Consensus 365 ~wl~~Wlr~~----------~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 365 AWLGEWLRKK----------SVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred HHHHHHHhhC----------CCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 111222111 00000000 000223333333322211 1111111 11111 1223344
Q ss_pred eeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCC-CcCcCCCCCCEEeCCCC
Q 003936 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP-ERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 514 n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n 583 (785)
..++.+|..+ ...-.+|++.+|.++.+|.. .+.+| .+|+++|++..+. ..+.++++|.+|.|++|
T Consensus 433 k~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4445555422 23456777888888887766 56677 7888888877763 34677777877777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-17 Score=190.82 Aligned_cols=231 Identities=25% Similarity=0.396 Sum_probs=180.0
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
.+...|+++++.++.+|..+ .+.|+.|++++|.+. .+|..+. .+|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~--------------------- 231 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ--------------------- 231 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc---------------------
Confidence 35678999999999999765 358999999998755 5665543 578888888763
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
+..+|..+ .++|+.|++++|.+. .+|..+. .+|+.|++++|.++.+|..+.. .|+.|++++|
T Consensus 232 ------------LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~-sL~~L~Ls~N 293 (754)
T PRK15370 232 ------------LTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPE-ELRYLSVYDN 293 (754)
T ss_pred ------------cccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCC-CCcEEECCCC
Confidence 22334333 247999999999865 6676553 5799999999999998876542 5899999988
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESL 546 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l 546 (785)
. +..+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+
T Consensus 294 ~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 294 S-IRTLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred c-cccCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh
Confidence 5 445665543 579999999998764 45433 3689999999999999987653 79999999999999888766
Q ss_pred cCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccc
Q 003936 547 NQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLR 593 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~ 593 (785)
. ++|+.|+|++|+++.+|+.+. .+|+.|++++|+|+.+|+.+.
T Consensus 366 p--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~ 408 (754)
T PRK15370 366 P--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLP 408 (754)
T ss_pred c--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHH
Confidence 3 689999999999999988764 379999999999999887643
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-18 Score=151.74 Aligned_cols=161 Identities=27% Similarity=0.444 Sum_probs=142.8
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+...+.|.+++|.+ ..+|..+..+.+|+.|++.+|+|+++|.++..+ ++|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie~lp~~issl-----------------------~klr~l 84 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSL-----------------------PKLRIL 84 (264)
T ss_pred ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhhhcChhhhhc-----------------------hhhhhe
Confidence 34678889999999864 556777889999999999999999999888877 889999
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeecc--ccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR--EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
+++-|++ ..+|..|+.++.|+.|||.+|.+. .+|..|..+..|+.|+|++|.+.-+|..++++++|+.|.+..|.+-
T Consensus 85 nvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 85 NVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 9887764 467889999999999999999887 5799899999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 564 RIPERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 564 ~lp~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++|..++.++.|+.|++.+|+++.+|+-
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 9999999999999999999999988644
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-17 Score=142.91 Aligned_cols=151 Identities=25% Similarity=0.448 Sum_probs=132.7
Q ss_pred CCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCcccc
Q 003936 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477 (785)
Q Consensus 398 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~ 477 (785)
++..+|..+..+.+|+.|++++|+ .+.+|..++.++.|+.|++.-|++..+|..++.+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~--------------------- 101 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSF--------------------- 101 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCC---------------------
Confidence 455677778889999999999986 4668888999999999999988887777666655
Q ss_pred CCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEE
Q 003936 478 VSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLK 556 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 556 (785)
+.|+.||+.+|.+.. .+|..|-.+..|+.|+|++|.+.-+|..++.+++|+.|.+.+|.+.++|..++.++.|++|.
T Consensus 102 --p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 --PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred --chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 888888888888754 67888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCcCC
Q 003936 557 LSNNNLERIPERLDPL 572 (785)
Q Consensus 557 L~~n~l~~lp~~l~~l 572 (785)
+.+|+++-+|+.++++
T Consensus 180 iqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLTVLPPELANL 195 (264)
T ss_pred cccceeeecChhhhhh
Confidence 9999999999876654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-16 Score=163.37 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=39.6
Q ss_pred CCCCCcEEecccCCCC----CCCCccccCccccceeeccCccccc-------CCccccCccccceecccCccCCcccccc
Q 003936 281 MFKSLTSLEIIDCPNF----ERLPDELGNLQALNRLIIDGTAIRE-------LPEGLGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~----~~lp~~l~~l~~L~~L~L~~n~i~~-------lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
.+.+|+.|.+.++... ..++..+...+.+++++++++.+.. ++..+..+++|++|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3445666666655432 1233344455556666665554442 1122344555555555555554433333
Q ss_pred ccCCCC---CCEEEeeCC
Q 003936 350 IFKLKS---VESIEISNC 364 (785)
Q Consensus 350 ~~~l~~---L~~L~l~~~ 364 (785)
+..+.+ |++|++++|
T Consensus 101 ~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 101 LESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHhccCcccEEEeeCC
Confidence 333322 555555554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-15 Score=159.13 Aligned_cols=239 Identities=25% Similarity=0.265 Sum_probs=137.2
Q ss_pred CccccCccccceeeccCcccc-----cCCccccCccccceecccCccCC------ccccccccCCCCCCEEEeeCCCCCC
Q 003936 300 PDELGNLQALNRLIIDGTAIR-----ELPEGLGQLALLSKLELKNCSEL------EYISSSIFKLKSVESIEISNCSNLK 368 (785)
Q Consensus 300 p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~ 368 (785)
...+..+.+|+.|+++++.++ .++..+...++|++++++++... ..++..+..+++|+.|++++|..-.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344555666888888887774 34445566667777777776554 1233445556677777776664211
Q ss_pred CCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC---CCCcEEEeccccCCC----cCCcccCCc-ccchhhh
Q 003936 369 GFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF---KSLTSLEIIDCKKLE----RLPDELGNL-EALEELR 440 (785)
Q Consensus 369 ~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l---~~L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~ 440 (785)
..+..+..+ ++|+.|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 96 --------------------------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 96 --------------------------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred --------------------------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 011111122 347777777766542 122233444 5666666
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCccc----CCCccccccccceEEecCeec
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAI 516 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l 516 (785)
+++|.++.-.. ..++..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+
T Consensus 144 L~~n~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 144 LGRNRLEGASC------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred cCCCcCCchHH------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 66666652100 00111222336777777777776532 233344456778888887776
Q ss_pred c-----ccCcccCCCCCCcEEEccCCcccc-----ccccc-cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeC
Q 003936 517 R-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESL-NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDL 580 (785)
Q Consensus 517 ~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l 580 (785)
+ .++..+..+++|++|++++|.++. +...+ ...+.|+.|++++|.++. ++..+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 5 234456667788888888887764 11111 124678888888887751 3444555678888888
Q ss_pred CCCCCCCC
Q 003936 581 FENNLDRI 588 (785)
Q Consensus 581 ~~n~l~~l 588 (785)
++|++..-
T Consensus 286 ~~N~l~~~ 293 (319)
T cd00116 286 RGNKFGEE 293 (319)
T ss_pred CCCCCcHH
Confidence 88876643
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-12 Score=122.44 Aligned_cols=136 Identities=25% Similarity=0.350 Sum_probs=117.9
Q ss_pred cCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceE
Q 003936 430 LGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVL 509 (785)
Q Consensus 430 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 509 (785)
+...+.|+++||++|.|+.+.+++... +.++.|++++|.+...- .+..+++|+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~-----------------------Pkir~L~lS~N~i~~v~--nLa~L~~L~~L 334 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLA-----------------------PKLRRLILSQNRIRTVQ--NLAELPQLQLL 334 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhc-----------------------cceeEEeccccceeeeh--hhhhcccceEe
Confidence 445678999999999999999888877 89999999999987543 37788999999
Q ss_pred EecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC--CCcCcCCCCCCEEeCCCCCCCC
Q 003936 510 TIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI--PERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 510 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~ 587 (785)
||++|.++++..+-..+-+.+.|.|+.|.+..+ .+++.+-+|..||+++|++..+ -..+++++-|+.+.+.+|++..
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999999999887777888999999999998776 3578889999999999999876 4568999999999999999998
Q ss_pred Cccc
Q 003936 588 IPEY 591 (785)
Q Consensus 588 lp~~ 591 (785)
+|+.
T Consensus 414 ~vdY 417 (490)
T KOG1259|consen 414 SVDY 417 (490)
T ss_pred cchH
Confidence 8875
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-12 Score=136.67 Aligned_cols=166 Identities=33% Similarity=0.508 Sum_probs=121.5
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+|..++.+..|+.+.+..|. ...+|..+.++..|..|+++.|++..+|..+..+.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp---------------------- 144 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP---------------------- 144 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc----------------------
Confidence 3455566667777777777765 35567778888888888888888888887777664
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
|+.|-+++|++ +.+|+.++.+..|..|+.+.|.+..+|..++++.+|+.|.++.|++..+|+.+..| .|..||+++
T Consensus 145 --Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 --LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred --ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence 55555555553 34566666777777777777777777777777888888888888887777777644 577788888
Q ss_pred CCCCCCCCcCcCCCCCCEEeCCCCCCCCCcccc
Q 003936 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPEYL 592 (785)
Q Consensus 560 n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~ 592 (785)
|++..||.++..+..|++|-|.+|+|++=|..+
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 888888888888888888888888887776554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-11 Score=140.00 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=175.8
Q ss_pred cCCCCCCCceEEEEecCCCCccccc-ccccCceEEEcCCCC--ccccccc-ccCCCCCcEEecCCCccccCCC-CCcccc
Q 003936 37 SLEGVPFTELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSK--VTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQ 111 (785)
Q Consensus 37 ~~~~~~~~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~--i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~ 111 (785)
.|+...+...|...+.++.+..++. ...+.|+.|-+..|. +..++.+ |..++.|++|||++|.-...+| .++.+-
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 4454444778888888888888877 666688888888886 5556544 7788888888888887777788 478888
Q ss_pred ccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--ccccccccc
Q 003936 112 NLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPL 188 (785)
Q Consensus 112 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l 188 (785)
+||+|++++.. +..+|..+++|++|.+|++..+.....+|... .+.+|++|.+..-..-.. ..... .+|+ .|..
T Consensus 596 ~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le-~L~~ 672 (889)
T KOG4658|consen 596 HLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND-KLLLKELENLE-HLEN 672 (889)
T ss_pred hhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc-hhhHHhhhccc-chhh
Confidence 88888888865 56888888888888888888877777776666 588888888865420000 00000 1222 2222
Q ss_pred cccccccc--Ccchhcccccc----ceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCcc--C-
Q 003936 189 LGVGIEEL--PSSIKCLSNIG----ELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE--Q- 259 (785)
Q Consensus 189 ~~~~i~~l--p~~l~~l~~L~----~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~--~- 259 (785)
-.+.+... -..+..++.|. .+.+.+ ......+..+..+.+|+.|.+.+|...+..--... ..... +
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~----~~~~~~~f~ 747 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE----SLIVLLCFP 747 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhccccc----ccchhhhHH
Confidence 22221111 11112222222 222222 22233344556666666666666644321100000 00000 0
Q ss_pred CcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCC--ccccCccccceecc
Q 003936 260 PSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELP--EGLGQLALLSKLEL 337 (785)
Q Consensus 260 ~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~l 337 (785)
....+.+..|.... .+.|....++|+.|.+..|...+.+.+....+..++.+.+..+.+..++ .+.+.++++..+.+
T Consensus 748 ~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 748 NLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred HHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 00001111221111 1223334678888888888888766666666666655444443333221 11233333333332
Q ss_pred cCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 338 KNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
.. +.|+.+.+..|+++..+|.+..+.+
T Consensus 827 ~~--------------~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 827 SF--------------LKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred Cc--------------cchhheehhcCcccccCccccccce
Confidence 22 2377777777776666665444433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.3e-11 Score=137.37 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=112.6
Q ss_pred cCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCcc-ccCCCC--CccccccceeccccccCcccc
Q 003936 52 HQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKL-LTKLPD--LSLAQNLEILDLGYCSSLTET 127 (785)
Q Consensus 52 ~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~-~~~~~~--l~~l~~L~~L~Ls~n~~~~~~ 127 (785)
.+......|. ......+...+.+|.+..++.... .++|++|-+.+|.. ...++. |..++.|++|||++|...+.+
T Consensus 509 ~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 509 DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CCcCccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3455556777 777889999999999988876544 34899999999963 444443 889999999999999999999
Q ss_pred ccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccc
Q 003936 128 HSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNI 206 (785)
Q Consensus 128 ~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L 206 (785)
|+.++.|-+||+|++++ ..+..+|..+ ++..|.+|++..+..+..+| .....+.+|
T Consensus 588 P~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~----------------------~i~~~L~~L 644 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIP----------------------GILLELQSL 644 (889)
T ss_pred ChHHhhhhhhhcccccC-CCccccchHHHHHHhhheecccccccccccc----------------------chhhhcccc
Confidence 99999999999999999 5678999999 89999999999876554432 334457788
Q ss_pred cceeccccc
Q 003936 207 GELLIYSCK 215 (785)
Q Consensus 207 ~~L~L~~~~ 215 (785)
++|.+....
T Consensus 645 r~L~l~~s~ 653 (889)
T KOG4658|consen 645 RVLRLPRSA 653 (889)
T ss_pred cEEEeeccc
Confidence 888877654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-11 Score=128.79 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=120.2
Q ss_pred cceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCc
Q 003936 309 LNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388 (785)
Q Consensus 309 L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~ 388 (785)
-...|++.|++.++|..+..+..|+.+.++.|. ...+|..+.++..|..++++.|.
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq----------------------- 132 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ----------------------- 132 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-----------------------
Confidence 455677777777777777777777777777644 44556666666666666666653
Q ss_pred cccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCC
Q 003936 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSS 468 (785)
Q Consensus 389 ~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~ 468 (785)
+..+|..++.++ |+.|-+++|+ ++.+|+.++....|..|+.+.|.+..+|+.+..
T Consensus 133 ----------lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~------------- 187 (722)
T KOG0532|consen 133 ----------LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY------------- 187 (722)
T ss_pred ----------hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhh-------------
Confidence 334455555443 6666666654 455666666666666777766666666654444
Q ss_pred CccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccC
Q 003936 469 FESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQ 548 (785)
Q Consensus 469 ~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 548 (785)
+.+|+.|.+..|.+..+|+.+. .-.|..||+|.|++..||-.|.+
T Consensus 188 ----------------------------------l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 188 ----------------------------------LTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred ----------------------------------HHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence 4455555555555666665555 23466777777777777777777
Q ss_pred CCCCCEEEcccCCCCCCCCcC---cCCCCCCEEeCCCCC
Q 003936 549 LSSLVSLKLSNNNLERIPERL---DPLSSLKYLDLFENN 584 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~l---~~l~~L~~L~l~~n~ 584 (785)
|..|++|-|.+|.+++-|..+ +...--++|+..-|+
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 777777777777777666543 233345666666663
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-11 Score=122.37 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=62.8
Q ss_pred cCccccceeeccCcccccCCc--cccCccccceecccCccCCcc--ccccccCCCCCCEEEeeCCCCCCCCCCCceeccC
Q 003936 304 GNLQALNRLIIDGTAIRELPE--GLGQLALLSKLELKNCSELEY--ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNID 379 (785)
Q Consensus 304 ~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~ 379 (785)
.++.+|+.+.|+++.+...+. ....+++++.|+++.|-+... +-.....+++|+.|.++.|.......+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence 346677777777777765553 456677777777777654432 122334566777776666642111100
Q ss_pred CCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCc-CCcccCCcccchhhhccCc
Q 003936 380 GSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLER-LPDELGNLEALEELRVEGT 444 (785)
Q Consensus 380 ~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~n 444 (785)
..-..+++|+.|.++.|.+... +......+|+|+.|++.+|
T Consensus 191 ------------------------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 191 ------------------------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ------------------------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 0011456788888888876531 2223345666677776666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-10 Score=122.67 Aligned_cols=153 Identities=37% Similarity=0.494 Sum_probs=110.6
Q ss_pred CCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 411 SLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 411 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
+|+.|++++|.+. .+|..++.+++|+.|++++|+++++|...... ++|+.|++++|
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----------------------~~L~~L~ls~N 196 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL-----------------------SNLNNLDLSGN 196 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhh-----------------------hhhhheeccCC
Confidence 6777777776543 33345666777777777777777777655333 66777777776
Q ss_pred cCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCc
Q 003936 491 KNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLD 570 (785)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 570 (785)
++.. +|........|++|.+++|.+..++..+..+..+..+.+.+|++..++..++.+++++.|++++|.++.++. +.
T Consensus 197 ~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~ 274 (394)
T COG4886 197 KISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LG 274 (394)
T ss_pred cccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-cc
Confidence 6543 333334455577788888766666777788888888888888888878888888889999999998888876 88
Q ss_pred CCCCCCEEeCCCCCCCCCc
Q 003936 571 PLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 571 ~l~~L~~L~l~~n~l~~lp 589 (785)
.+.+|+.|++++|.+..++
T Consensus 275 ~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 275 SLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccCccCEEeccCccccccc
Confidence 8888999999998865544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-10 Score=107.59 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCccccc-c-cccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCC-ccccccceecccc
Q 003936 44 TELRYFEWHQFPLKTLNI-L-HWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDL-SLAQNLEILDLGY 120 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l-~~l~~L~~L~Ls~ 120 (785)
.++|.|+|++|.++.+.. . .+.+|+.|++++|.|+.+ +++..+++|++|++++|++....+.+ ..+++|++|++++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 344555555555555544 2 345555555555555554 23445555555555555433322222 2345555555555
Q ss_pred ccCcc-ccccccccCCcccEEecCCCCC
Q 003936 121 CSSLT-ETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 121 n~~~~-~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
|.+.. ..-..+..+++|++|+|.+|+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 54322 1113344555555555555543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-10 Score=123.98 Aligned_cols=142 Identities=30% Similarity=0.458 Sum_probs=105.4
Q ss_pred ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
..+..++.|+.|++++|++.. +|...+..+.|+.|++++|.++.+|..+... ..|+
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~-----------------------~~L~ 212 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELL-----------------------SALE 212 (394)
T ss_pred hhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchhhhhh-----------------------hhhh
Confidence 345566777777777776433 3333446788888888888888888766444 4466
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
+|.+++|.. ...+..+.++.++..+.+.+|++..++..++.++++++|++++|.++.++. ++.+.+|+.|++++|.+.
T Consensus 213 ~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 213 ELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 666666642 234445677778888888888888888888899999999999999999887 889999999999999988
Q ss_pred CCCCcCcC
Q 003936 564 RIPERLDP 571 (785)
Q Consensus 564 ~lp~~l~~ 571 (785)
.++.....
T Consensus 291 ~~~~~~~~ 298 (394)
T COG4886 291 NALPLIAL 298 (394)
T ss_pred ccchhhhc
Confidence 76544333
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=105.12 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=54.4
Q ss_pred HhcccccceeeeecCCCccccccCCCCC-C-CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccc-cCCCCC
Q 003936 15 FSKMTELRLLKFCGSKNKCMVHSLEGVP-F-TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDV-QNLVSL 90 (785)
Q Consensus 15 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L 90 (785)
+-+..++|.|++.+|.+. .+ +.+. . .+|+.|++++|.++.++. ..+++|++|++++|+|+.+.+++ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~---~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS---TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc---cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 345567899999999873 33 4555 3 799999999999999999 89999999999999999997665 469999
Q ss_pred cEEecCCCccccC--CCCCccccccceeccccccCcccc---ccccccCCcccEEecCC
Q 003936 91 KRIDLKYSKLLTK--LPDLSLAQNLEILDLGYCSSLTET---HSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 91 ~~L~Ls~n~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~---~~~l~~l~~L~~L~L~~ 144 (785)
+.|+|++|++... +..+..+++|++|+|.+|++...- ...+..+++|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999986443 224788999999999999865421 12367788888887554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-10 Score=115.68 Aligned_cols=180 Identities=21% Similarity=0.225 Sum_probs=89.8
Q ss_pred ccCCCCCcEEEeccccCCCc--CCcccCCcccchhhhccCccccccChhhhh--h-hhcccccccCCCCc-cCCccccCC
Q 003936 406 LCMFKSLTSLEIIDCKKLER--LPDELGNLEALEELRVEGTGIREVPKSLAQ--L-ALSKLKLKKCSSFE-SLPSRLYVS 479 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~--l-~L~~L~l~~~~~~~-~lp~~~~~~ 479 (785)
...+++++.|+++.|-+..- +-.....+++|+.|+++.|.+....++... + .++.|.+++|.... .+-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45678888888888754432 223456778888888888887744433221 1 14444444444331 122222233
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCcccc--cccc-----ccCCC
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQI--IPES-----LNQLS 550 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~ 550 (785)
++|+.|++..|............+..|++|+|++|.+-..+ ...+.++.|+.|+++.|.+.+ +|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555555432222223333445555555555554443 334455555555555555543 2322 23445
Q ss_pred CCCEEEcccCCCCCCCC--cCcCCCCCCEEeCCCCCC
Q 003936 551 SLVSLKLSNNNLERIPE--RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~n~l 585 (785)
+|+.|++..|++..++. .+..+.+|+.|.+..|++
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 55555555555544332 233344445554444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-10 Score=108.15 Aligned_cols=125 Identities=23% Similarity=0.205 Sum_probs=95.3
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecC
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLK 96 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls 96 (785)
+.|.+|++++|.+ ..+.+.+.. +++|.|++++|.+..+.. ..+.+|++|||++|.++.+-..-.++.+.+.|.|+
T Consensus 284 q~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccch---hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4567788888887 556667776 888888888888888877 88888888888888888775556678888888888
Q ss_pred CCccccCCCCCccccccceeccccccCcc-ccccccccCCcccEEecCCCCC
Q 003936 97 YSKLLTKLPDLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 97 ~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
+|. +..+..++.+.+|..||+++|++.. .--..+++++.|+++.|.+|+.
T Consensus 361 ~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 885 4556677888888888888887543 2234678888888888887653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-10 Score=114.65 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCCCCEEEeeCCcCccc----CCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cc
Q 003936 478 VSKSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp 543 (785)
..+.|+.+.+..|.+... +...+..+++|++|||.+|.++. +...+..+++|++|++++|.+.. +-
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 346788888888776432 23456778888888888888772 34556778888888888888763 22
Q ss_pred ccc-cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCC
Q 003936 544 ESL-NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 544 ~~l-~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l 585 (785)
..+ ...++|+.|.+.+|.++. +-.++...+.|+.|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 333 346888888888888863 344456678888888888887
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-08 Score=113.22 Aligned_cols=103 Identities=34% Similarity=0.482 Sum_probs=70.2
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 559 (785)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777777777777777777777777777765 556667777777777777777764 666677777777777777
Q ss_pred CCCCC-CCCcCcCC-CCCCEEeCCCCC
Q 003936 560 NNLER-IPERLDPL-SSLKYLDLFENN 584 (785)
Q Consensus 560 n~l~~-lp~~l~~l-~~L~~L~l~~n~ 584 (785)
|+++. +|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77764 56665442 355666666665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-09 Score=105.86 Aligned_cols=174 Identities=22% Similarity=0.218 Sum_probs=121.2
Q ss_pred ccccCCCCCcEEEeccccCCCcCCcc----cCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERLPDE----LGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+...++|+.|+||+|-+-...+.. +..+..|++|.|.+|.+...-...-.-.|..+. .++.. ..-
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~-------~~~ 156 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKA-------ASK 156 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhcc-------CCC
Confidence 34456678899999998776554443 456788999999999887433222111122222 11111 112
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cccc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPES 545 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~ 545 (785)
+.|+++...+|..... +...+...+.|+.+.++.|.|.. +...+..+++|+.|||.+|-++. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 7899999998886432 33456667899999999988762 24567889999999999998874 5567
Q ss_pred ccCCCCCCEEEcccCCCCC-----CCCcC-cCCCCCCEEeCCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLER-----IPERL-DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~l~~n~l~ 586 (785)
+..+++|+.|++++|.+.. +-..+ ...++|+.|.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 7888999999999998874 22222 34789999999999876
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=76.09 Aligned_cols=57 Identities=51% Similarity=0.735 Sum_probs=30.4
Q ss_pred CCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCEEeCCCCC
Q 003936 528 SLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 528 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~ 584 (785)
+|++|++++|+++.+|. .|..+++|+.|++++|+++.+ |..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555542 345555555555555555554 2345555555555555554
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=108.57 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=89.5
Q ss_pred CceEEEcCCCCcc-cccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecC
Q 003936 66 NLVSLKMPGSKVT-QLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLD 143 (785)
Q Consensus 66 ~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 143 (785)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.+...+| .++.+++|+.|+|++|.+.+.+|+.++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788888888887 667788889999999999988877777 58888999999999988888888889999999999999
Q ss_pred CCCCCCcCCCcc-c-cccccEEeccCCcCCCCCC
Q 003936 144 RCKSLTSLPTSI-H-SKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 144 ~~~~~~~~p~~~-~-l~~L~~L~ls~~~~l~~lp 175 (785)
+|...+.+|..+ . ..++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888877 2 3566778888776554443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-07 Score=71.66 Aligned_cols=59 Identities=42% Similarity=0.643 Sum_probs=42.2
Q ss_pred cccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccCCC
Q 003936 504 EYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 504 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l 562 (785)
++|++|++++|.++.+| ..|.++++|++|++++|+++.++ ..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35667777777777775 46677777777777777777765 4577777777777777764
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-08 Score=107.86 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=17.3
Q ss_pred cceEEecCeeccccCcccCCCCCCcEEEccCCccc
Q 003936 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 506 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
|+.+++++|.+..++..+..+..+..|++.+|++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 45555555555544433444455555555555444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=96.77 Aligned_cols=138 Identities=27% Similarity=0.486 Sum_probs=84.9
Q ss_pred hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec---cccCcccCCCCCCcEEEc
Q 003936 458 LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI---REVPESLGQLSSLEWLVL 534 (785)
Q Consensus 458 L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~lp~~~~~l~~L~~L~L 534 (785)
++.|.+.+|..+..+|..+. ++|+.|++++|.....+|. +|+.|+++++.. ..+|. +|+.|.+
T Consensus 74 LtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I 139 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSLSI 139 (426)
T ss_pred CcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhheec
Confidence 55555666666655555442 6788888888865555553 466777776554 34443 5677777
Q ss_pred cCCc-c--ccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC--CCccccccCCCCCCcccccccce
Q 003936 535 SDNN-L--QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD--RIPEYLRSFPTSIPSEFTSLRLS 609 (785)
Q Consensus 535 s~n~-l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~~~~~~~~ip~~l~~l~~~ 609 (785)
.+++ . ..+|.. -.++|+.|++++|....+|..+. .+|+.|+++.|... .++. ..+|+++ .
T Consensus 140 ~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~------~sLP~nl-~---- 204 (426)
T PRK15386 140 NSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISF------EGFPDGL-D---- 204 (426)
T ss_pred cccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccccccccCcc------ccccccc-E----
Confidence 5433 1 112211 12589999999988776665544 58999998877533 2332 1347666 4
Q ss_pred eeeccccccCccchh
Q 003936 610 VDLRNCLKLDPNELS 624 (785)
Q Consensus 610 l~~~~C~~L~~~~~~ 624 (785)
+.+.+|..+....+.
T Consensus 205 L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 205 IDLQNSVLLSPDVFK 219 (426)
T ss_pred echhhhcccCHHHhh
Confidence 777788777665543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-08 Score=106.79 Aligned_cols=191 Identities=23% Similarity=0.268 Sum_probs=104.7
Q ss_pred cccccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEE
Q 003936 17 KMTELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRI 93 (785)
Q Consensus 17 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 93 (785)
.+..++.+.+..|.+ ..+...+.. .+|+.|++.+|.+..+.. ..+.+|++|++++|.|+.+ .++..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i---~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI---AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhh---hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhh
Confidence 444555555666554 222232333 677777777777776666 5577777777777777766 346666667777
Q ss_pred ecCCCccccCCCCCccccccceeccccccCccccc-cccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCC
Q 003936 94 DLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETH-SSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172 (785)
Q Consensus 94 ~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~ 172 (785)
++++|. +..++.+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.. ..+...-.+..+..+++..|. +.
T Consensus 146 ~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i-~~i~~~~~~~~l~~~~l~~n~-i~ 221 (414)
T KOG0531|consen 146 NLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI-REIEGLDLLKKLVLLSLLDNK-IS 221 (414)
T ss_pred eeccCc-chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch-hcccchHHHHHHHHhhccccc-ce
Confidence 777775 3445566667777777777776444322 1 46666677777766432 222211123333333444432 11
Q ss_pred CCCCccc---cccccccccccccccccCcchhccccccceecccccc
Q 003936 173 NLPKMTS---CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKR 216 (785)
Q Consensus 173 ~lp~~~~---~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 216 (785)
.+..... .+|+ .+++.+|.+..++..+..+..+..|++..+.+
T Consensus 222 ~~~~l~~~~~~~L~-~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 222 KLEGLNELVMLHLR-ELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred eccCcccchhHHHH-HHhcccCccccccccccccccccccchhhccc
Confidence 1111111 1244 66666666665555555555555555555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-08 Score=109.08 Aligned_cols=115 Identities=31% Similarity=0.254 Sum_probs=84.7
Q ss_pred CccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSL 552 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 552 (785)
...+.-++.|+.|+|++|++.... .+..++.|++|||++|.+..+|..-..-..|+.|.+++|.++++ .++.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhh
Confidence 333444488888899988876543 67788899999999999988875322223489999999988876 356788899
Q ss_pred CEEEcccCCCCCCC--CcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 553 VSLKLSNNNLERIP--ERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 553 ~~L~L~~n~l~~lp--~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+.||+++|-|.+.. .-+..+..|+.|+|.+|++-.-|.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99999998776431 125667788899999998766554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-08 Score=99.28 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=103.5
Q ss_pred eEEEEecCCCCccccc--ccccCceEEEcCCCCccc--ccccccCC-CCCcEEecCCCccccCC-C-CCccccccceecc
Q 003936 46 LRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQ--LWDDVQNL-VSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDL 118 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~--l~~~~~~l-~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L 118 (785)
=+.+|+.+-++....- ---..+.++.+....+.+ +.+-+.-+ ..|++|||+...+.... - -++.+.+|+.|.|
T Consensus 138 W~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl 217 (419)
T KOG2120|consen 138 WQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL 217 (419)
T ss_pred eeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence 3456666655542111 112345555555443331 21222222 35777888776543221 1 2567778888888
Q ss_pred ccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCCcCCCCCCCcc----ccccccccccccc
Q 003936 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKNLPKMT----SCHLRSTLPLLGV 191 (785)
Q Consensus 119 s~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~~~l~~lp~~~----~~~L~~~L~l~~~ 191 (785)
.+++....+...+++-.+|+.|+|+.|+..++..... .++.|++|++++|...+..-... ...++ .|+++|+
T Consensus 218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~-~LNlsG~ 296 (419)
T KOG2120|consen 218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT-QLNLSGY 296 (419)
T ss_pred cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh-hhhhhhh
Confidence 8877766677777788888888888877776554433 67788888888886544331111 13444 4555543
Q ss_pred cc----cccCcchhccccccceecccccccc-ccchhhhcccccccccccCC
Q 003936 192 GI----EELPSSIKCLSNIGELLIYSCKRLE-NISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 192 ~i----~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 238 (785)
.- ..+..-...+++|.+|||++|.... .....+.+++.|++|.++.|
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 31 1111122345666666666554332 22334445555555555555
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-08 Score=98.36 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=147.7
Q ss_pred CCCcEEecCCCccccCCC--C-CccccccceeccccccCccc--cccccccCCcccEEecCCCCCCCcCCCc-c--cccc
Q 003936 88 VSLKRIDLKYSKLLTKLP--D-LSLAQNLEILDLGYCSSLTE--THSSIQYLNKLEVLDLDRCKSLTSLPTS-I--HSKY 159 (785)
Q Consensus 88 ~~L~~L~Ls~n~~~~~~~--~-l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~--~l~~ 159 (785)
..||.|.+.+++-...-+ . ...++++++|++.+|..+.. .-..-..+++|++|++..|..++...-. + ++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888888886544433 2 46788888888888874432 1122346788888888888777754322 2 7888
Q ss_pred ccEEeccCCcCCCCCC--Ccc-c-ccccccccccccccccc---Ccchhccccccceeccccccccccc--hhhhccccc
Q 003936 160 LKRLVLRGCSNLKNLP--KMT-S-CHLRSTLPLLGVGIEEL---PSSIKCLSNIGELLIYSCKRLENIS--SSIFKLQFL 230 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp--~~~-~-~~L~~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L 230 (785)
|+++++++|+.++.-. ... + ..++ .+.+.|..-.+. -..-+....+..+++..|...+... ..-..+..|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~-~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELE-KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhh-hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 8899999887665410 000 0 1111 222222111000 0011122334444444553333222 111233444
Q ss_pred ccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCC--CccccCccc
Q 003936 231 ESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERL--PDELGNLQA 308 (785)
Q Consensus 231 ~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~ 308 (785)
+.++.++|..+...- +...-.+..+|+.|.+..|..++.. ...-.+++.
T Consensus 297 q~l~~s~~t~~~d~~-----------------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEV-----------------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hhhcccCCCCCchHH-----------------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 444444443321110 0011123567777777777765422 222345677
Q ss_pred cceeeccCcccc---cCCccccCccccceecccCccCCccc-----cccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 309 LNRLIIDGTAIR---ELPEGLGQLALLSKLELKNCSELEYI-----SSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 309 L~~L~L~~n~i~---~lp~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
|+.+++.+.... ++-..-.+.+.|+.|.++.|...... ......+..|+.+.+++|+.+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----------- 416 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----------- 416 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----------
Confidence 888877775443 22222345678888888877766543 33334567777888888774332
Q ss_pred CCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCC
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLE 424 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~ 424 (785)
..-..+..+++|+.+++.+|....
T Consensus 417 --------------------~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 417 --------------------ATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred --------------------HHHHHHhhCcccceeeeechhhhh
Confidence 111233456788888888886543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-06 Score=60.51 Aligned_cols=39 Identities=36% Similarity=0.562 Sum_probs=18.1
Q ss_pred CCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 551 SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
+|++|++++|+++.+|+.+.++++|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 344444444444444444445555555555555544444
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.2e-08 Score=82.43 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=87.9
Q ss_pred CCCEEEeeCCcCcc--cCCCccccccccceEEecCeeccccCcccCC-CCCCcEEEccCCccccccccccCCCCCCEEEc
Q 003936 481 SLTSLEIIDCKNFM--RLPDEIGNLEYLKVLTIKGTAIREVPESLGQ-LSSLEWLVLSDNNLQIIPESLNQLSSLVSLKL 557 (785)
Q Consensus 481 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 557 (785)
.+..++|+.|++-- ..+..+.....|+..+|++|.+..+|..|.. ++.++.|++++|.++++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 45566777776531 2223344456778889999999999877755 45899999999999999999999999999999
Q ss_pred ccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 558 SNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 558 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+.|.+...|..+..+.+|-.|+..+|.+..||-
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 999999988888889999999999998877774
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-08 Score=94.41 Aligned_cols=224 Identities=19% Similarity=0.186 Sum_probs=141.4
Q ss_pred eEEEcCCCCcccccccccCC--CCCcEEecCCCccccCCCC----Cccc-cccceeccccccCcc-ccccccccCCcccE
Q 003936 68 VSLKMPGSKVTQLWDDVQNL--VSLKRIDLKYSKLLTKLPD----LSLA-QNLEILDLGYCSSLT-ETHSSIQYLNKLEV 139 (785)
Q Consensus 68 ~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~~~----l~~l-~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~ 139 (785)
+.||+.+-.|.. .....+ ....++.+... ...-|. +.-+ ..||+|||+.-.+.. .+..-+..+.+|+.
T Consensus 139 ~~lDl~~r~i~p--~~l~~l~~rgV~v~Rlar~--~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIHP--DVLGRLLSRGVIVFRLARS--FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccCh--hHHHHHHhCCeEEEEcchh--hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 456666655542 222222 34555666543 233332 2222 359999999866544 34455778999999
Q ss_pred EecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceecccccccc
Q 003936 140 LDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLE 218 (785)
Q Consensus 140 L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 218 (785)
|.|.++.....+-..+ +-.+|+.|+++.|+.++.... ---+.+++.|..|++++|....
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~--------------------~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL--------------------QLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHH--------------------HHHHHhhhhHhhcCchHhhccc
Confidence 9999976655555555 788999999999987765321 1135688999999999998766
Q ss_pred ccchh-hh-cccccccccccCCCC-CccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCC
Q 003936 219 NISSS-IF-KLQFLESIRIHRCPN-LQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN 295 (785)
Q Consensus 219 ~~~~~-l~-~l~~L~~L~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 295 (785)
..... +. --+.|..|+++++.. +..-+ +......+++|..|+++||..
T Consensus 275 ~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----------------------------~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 275 EKVTVAVAHISETLTQLNLSGYRRNLQKSH-----------------------------LSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----------------------------HHHHHHhCCceeeeccccccc
Confidence 54322 22 236677788877632 11000 001122478888888888877
Q ss_pred CC-CCCccccCccccceeeccCcccc--cCCccccCccccceecccCccCCc
Q 003936 296 FE-RLPDELGNLQALNRLIIDGTAIR--ELPEGLGQLALLSKLELKNCSELE 344 (785)
Q Consensus 296 ~~-~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~ 344 (785)
++ ..-..|.+++.|++|.++.+..- +.--.+...|+|.+|++-+|-.-+
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 64 33345677888999999885432 111236778999999998876544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.1e-06 Score=87.20 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCcEEEeccccCCCcCCcccCCcccchhhhccCc-cccccC
Q 003936 411 SLTSLEIIDCKKLERLPDELGNLEALEELRVEGT-GIREVP 450 (785)
Q Consensus 411 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n-~i~~lp 450 (785)
+|+.|.+++|..+..+|..+ .++|+.|++++| .+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 57777777776666666543 245666666655 444444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-06 Score=59.38 Aligned_cols=40 Identities=40% Similarity=0.557 Sum_probs=27.8
Q ss_pred CCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCC
Q 003936 527 SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 527 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 566 (785)
++|++|++++|+++.+|..++++++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777776777777777777777777654
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-07 Score=77.93 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=97.9
Q ss_pred cchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCcc-ccccccceEEecC
Q 003936 435 ALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKG 513 (785)
Q Consensus 435 ~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~ 513 (785)
.+..++|++|++..++..+..+. ....|+..++++|.+-. +|..| ...+.++.|++++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~--------------------~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~ 86 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS--------------------KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLAN 86 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh--------------------CCceEEEEecccchhhh-CCHHHhhccchhhhhhcch
Confidence 45567777777776666555441 11556777888887643 44444 3456889999999
Q ss_pred eeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 514 n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|.+..||..+-.-+..-..++.++++.
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence 9999999999999999999999999999999888899999999999999888766433333333444555444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-07 Score=100.55 Aligned_cols=130 Identities=24% Similarity=0.227 Sum_probs=98.2
Q ss_pred cccCCCCCCCceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCC--ccc
Q 003936 35 VHSLEGVPFTELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDL--SLA 110 (785)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l--~~l 110 (785)
..+..++.|.+|.+.+.+.|.+..+.. .-++.|+.|+|++|+++++- .+..+++|++|||++|. +..+|.+ ..+
T Consensus 155 gd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 155 GDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC 232 (1096)
T ss_pred cccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh
Confidence 445566666888889999999988877 77889999999999998774 68889999999999997 4556654 344
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCccccccccEEeccCCc
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSIHSKYLKRLVLRGCS 169 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~~l~~L~~L~ls~~~ 169 (785)
. |+.|++++|.. ..+ ..+.+|++|+.||+++|-... .+.....+..|+.|+|.||+
T Consensus 233 ~-L~~L~lrnN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 233 K-LQLLNLRNNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-heeeeecccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4 99999999874 333 358889999999999854333 22222267888999999886
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.4e-06 Score=80.83 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=39.6
Q ss_pred CCCCcEEecccCCCCC-CCCccccCccccceeeccCcccccCCc--cccCccccceecccCccCCcccc
Q 003936 282 FKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIRELPE--GLGQLALLSKLELKNCSELEYIS 347 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~ 347 (785)
|+++..+-+.+|+.-+ .-...+..++.+..|.|+.++|....+ .+..++.|..|.++++++...+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4444555444443321 122334455666678888888774432 36778888888888888776543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.9e-07 Score=89.98 Aligned_cols=275 Identities=18% Similarity=0.227 Sum_probs=135.8
Q ss_pred CceEEEEecCCCCc---cccc--ccccCceEEEcCCCC-ccc--ccccccCCCCCcEEecCCCccccCCC---CCccccc
Q 003936 44 TELRYFEWHQFPLK---TLNI--LHWENLVSLKMPGSK-VTQ--LWDDVQNLVSLKRIDLKYSKLLTKLP---DLSLAQN 112 (785)
Q Consensus 44 ~~L~~L~l~~~~l~---~lp~--~~l~~L~~L~L~~~~-i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~ 112 (785)
..||.|.+.|+.-. .+-. ..++++++|.+.++. ++. +-.--..+.+|++|+|..|..++... -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 44666666665332 2222 556666666666654 221 11112456677777777754433322 1345677
Q ss_pred cceeccccccCccc--cccccccCCcccEEecCCCCCCCcCCCc-c--ccccccEEeccCCcCCCCCCCccccccccccc
Q 003936 113 LEILDLGYCSSLTE--THSSIQYLNKLEVLDLDRCKSLTSLPTS-I--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLP 187 (785)
Q Consensus 113 L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~ 187 (785)
|++|++++|..+.. +-.-...++.++.+.+++|...+.-.-. + ...-+..+++..|..+++....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---------- 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---------- 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----------
Confidence 77777777764332 1122344555666656665433210000 0 2333444555555444332100
Q ss_pred cccccccccCcchhccccccceeccccccccccc-hh-hhcccccccccccCCCCCccccCCCcccCCCCCccCCccccc
Q 003936 188 LLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS-SS-IFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELK 265 (785)
Q Consensus 188 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~-l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 265 (785)
..-..+..|+.|+.++|...+..+ .. ..+..+|+.+.++.|.++... .++..
T Consensus 288 ----------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-----~ft~l----------- 341 (483)
T KOG4341|consen 288 ----------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-----GFTML----------- 341 (483)
T ss_pred ----------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-----hhhhh-----------
Confidence 001234455666666555433221 11 224455555555555443211 11100
Q ss_pred ccCCCCCCCCCCCccCCCCCcEEecccCCCCC--CCCccccCccccceeeccCccc-cc-----CCccccCccccceecc
Q 003936 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE--RLPDELGNLQALNRLIIDGTAI-RE-----LPEGLGQLALLSKLEL 337 (785)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~n~i-~~-----lp~~l~~l~~L~~L~l 337 (785)
-.+.+.|+.+++.+|.... .+...-.+++.|+.+.++++.. ++ +...-..+..|+.+.+
T Consensus 342 -------------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 342 -------------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred -------------hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 0124555555555554432 2222234577777777776432 21 1222345677888888
Q ss_pred cCccCCcc-ccccccCCCCCCEEEeeCCCCC
Q 003936 338 KNCSELEY-ISSSIFKLKSVESIEISNCSNL 367 (785)
Q Consensus 338 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l 367 (785)
++|+.+.. .-+.+..+++|+.+++.+|+..
T Consensus 409 ~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 409 DNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 88887653 3334566788888888888744
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.5e-06 Score=79.50 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=17.5
Q ss_pred CCCcEEEeccccCCC-cCCcccCCcccchhhhccCcccc
Q 003936 410 KSLTSLEIIDCKKLE-RLPDELGNLEALEELRVEGTGIR 447 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~L~~n~i~ 447 (785)
.+|+.|.+.+....- .....+..++.+++|+++.|.+.
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 455555554433211 12223445555666666655433
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.5e-05 Score=69.56 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=67.6
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccc-cCCCCCcEEecCCCccccC--CCCCccccccceeccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTK--LPDLSLAQNLEILDLG 119 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~n~~~~~--~~~l~~l~~L~~L~Ls 119 (785)
.....+|++.|.+..++. ..+++|..|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+... +..+..++.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 667778888888887777 77888888888888888775554 3456788888888765332 2346677777777777
Q ss_pred cccCcccc---ccccccCCcccEEecCC
Q 003936 120 YCSSLTET---HSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 120 ~n~~~~~~---~~~l~~l~~L~~L~L~~ 144 (785)
+|.....- --.+..+++|+.||.++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 77643211 12355666666666654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.1e-05 Score=69.75 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=91.7
Q ss_pred eEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCc-cccccceecccccc
Q 003936 46 LRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLS-LAQNLEILDLGYCS 122 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~-~l~~L~~L~Ls~n~ 122 (785)
=+.+++.++++..+.. ........+||++|.+..+ ..+..++.|.+|.|.+|++...-|.+. .+++|..|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3555666666554444 4566788999999999877 457889999999999999988888864 56789999999997
Q ss_pred Ccc-ccccccccCCcccEEecCCCCCCCcC--CCcc--ccccccEEeccCC
Q 003936 123 SLT-ETHSSIQYLNKLEVLDLDRCKSLTSL--PTSI--HSKYLKRLVLRGC 168 (785)
Q Consensus 123 ~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--p~~~--~l~~L~~L~ls~~ 168 (785)
+.. ..-.-+..+++|++|.+-+|+....- -..+ .+++|++||.++-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 543 11234788999999999997654421 1122 7899999999864
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.8e-05 Score=90.44 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=60.8
Q ss_pred CceEEEEecCCCCc--cccc---ccccCceEEEcCCCCcc--cccccccCCCCCcEEecCCCccccCCCCCcccccccee
Q 003936 44 TELRYFEWHQFPLK--TLNI---LHWENLVSLKMPGSKVT--QLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEIL 116 (785)
Q Consensus 44 ~~L~~L~l~~~~l~--~lp~---~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L 116 (785)
.+||+|+++|...- .=|. ..++.|+.|.+.+-.+. .+..-..++++|+.||+|++. .+.+..++.+++||+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 55666666654321 1111 34556666666654443 122224556666666666664 2333445666666666
Q ss_pred ccccccCcc-ccccccccCCcccEEecCCCCCCCcC--C-----CccccccccEEeccCC
Q 003936 117 DLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSL--P-----TSIHSKYLKRLVLRGC 168 (785)
Q Consensus 117 ~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--p-----~~~~l~~L~~L~ls~~ 168 (785)
.+.+=.+.. ..-..+.+|++|+.||+|.-.....- . ....+++|+.||.|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 655533222 22233555666666666653322211 0 0113566677776654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00011 Score=84.21 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=54.0
Q ss_pred ccCceEEEcCCCCcc-ccc-ccc-cCCCCCcEEecCCCccccCC-C-CCccccccceeccccccCccccccccccCCccc
Q 003936 64 WENLVSLKMPGSKVT-QLW-DDV-QNLVSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLE 138 (785)
Q Consensus 64 l~~L~~L~L~~~~i~-~l~-~~~-~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 138 (785)
-.+|++|++++...- .-| ..+ ..||.|+.|.+++-.+...- . -..++++|+.||+|++.+.. + ..+++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHH
Confidence 456666666664322 212 112 34667777766664432221 1 14566667777777655322 2 4566667777
Q ss_pred EEecCCCCCCC--cCCCccccccccEEeccCCc
Q 003936 139 VLDLDRCKSLT--SLPTSIHSKYLKRLVLRGCS 169 (785)
Q Consensus 139 ~L~L~~~~~~~--~~p~~~~l~~L~~L~ls~~~ 169 (785)
.|.+.+-.... .+-.-+.+++|+.||+|.-.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66666533222 11122266667777776543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00022 Score=68.94 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred ccccEEeccCCcCCCCCCCccc-------cccccccccccccccc--c----Ccchhccccccceeccccccccc----c
Q 003936 158 KYLKRLVLRGCSNLKNLPKMTS-------CHLRSTLPLLGVGIEE--L----PSSIKCLSNIGELLIYSCKRLEN----I 220 (785)
Q Consensus 158 ~~L~~L~ls~~~~l~~lp~~~~-------~~L~~~L~l~~~~i~~--l----p~~l~~l~~L~~L~L~~~~~~~~----~ 220 (785)
+.|++.++..|+ +...|.... ..++ ++.+..|.|.. + -..+..+.+|+.|++..|.++.. +
T Consensus 157 p~Le~vicgrNR-lengs~~~~a~~l~sh~~lk-~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 157 PKLEVVICGRNR-LENGSKELSAALLESHENLK-EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCceEEEeccch-hccCcHHHHHHHHHhhcCce-eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456666666553 322222111 2455 66666666641 1 12456788999999999987643 3
Q ss_pred chhhhcccccccccccCC
Q 003936 221 SSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 221 ~~~l~~l~~L~~L~l~~~ 238 (785)
...+...+.|+.|.+..|
T Consensus 235 a~al~~W~~lrEL~lnDC 252 (388)
T COG5238 235 ADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhcccchhhhccccch
Confidence 344556677788887776
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=4.3e-05 Score=74.02 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=57.9
Q ss_pred hcccccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccc--cccCCCCCcE
Q 003936 16 SKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWD--DVQNLVSLKR 92 (785)
Q Consensus 16 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~ 92 (785)
+.+.+.+.|+..|+.+++ +.+-..+ +.|++|.|+-|++++|.. ..+++|++|.|..|.|..+-+ -+.++++||.
T Consensus 16 sdl~~vkKLNcwg~~L~D-Isic~kM--p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDD-ISICEKM--PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccH-HHHHHhc--ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345566667777766533 1111111 567777777777777777 777777777777777765532 2566777777
Q ss_pred EecCCCccccCCCC------Cccccccceec
Q 003936 93 IDLKYSKLLTKLPD------LSLAQNLEILD 117 (785)
Q Consensus 93 L~Ls~n~~~~~~~~------l~~l~~L~~L~ 117 (785)
|.|..|.-....+. +..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766654333321 34455555554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00038 Score=67.39 Aligned_cols=84 Identities=24% Similarity=0.172 Sum_probs=44.1
Q ss_pred CCCCEEEeeCCcCcccC----CCccccccccceEEecCeecccc------CcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCKNFMRL----PDEIGNLEYLKVLTIKGTAIREV------PESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
+.|+......|.+..-. ...+..-..|+++.+..|.|..= -..+..+.+|+.|||.+|-++. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 45555555555542211 01122224566666666665411 1123456677777777776653 334
Q ss_pred cccCCCCCCEEEcccCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~ 563 (785)
.+...+.|+.|.+..|-++
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 4455556777777777665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00015 Score=70.41 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=53.9
Q ss_pred ceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCC--CCCccccccceeccccc
Q 003936 45 ELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKL--PDLSLAQNLEILDLGYC 121 (785)
Q Consensus 45 ~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~--~~l~~l~~L~~L~Ls~n 121 (785)
+.+.|++-|+.+.++.. ..++.|++|.|+-|+|+.+ ..+..+++|+.|.|..|.+...- .-+.++++|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 45566666666666666 6666677777777766665 33566666666666666532211 12455666666666665
Q ss_pred cCcccccc-----ccccCCcccEEe
Q 003936 122 SSLTETHS-----SIQYLNKLEVLD 141 (785)
Q Consensus 122 ~~~~~~~~-----~l~~l~~L~~L~ 141 (785)
.-.+.-+. .+.-|++|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 54333221 234455555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0012 Score=64.07 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=39.1
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCC--Ccc-cccccccCCCCCcEEecCCCccc--cCCCCCccccccceec
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGS--KVT-QLWDDVQNLVSLKRIDLKYSKLL--TKLPDLSLAQNLEILD 117 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~--~i~-~l~~~~~~l~~L~~L~Ls~n~~~--~~~~~l~~l~~L~~L~ 117 (785)
..|+.|++.+..++++.. ..+++|+.|.++.| ++. .++.-...+++|++|+|++|++. ..++.+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 455555555555555554 55555666666655 332 22222334455666666555532 1122344445555555
Q ss_pred ccccc
Q 003936 118 LGYCS 122 (785)
Q Consensus 118 Ls~n~ 122 (785)
+.+|.
T Consensus 123 l~n~~ 127 (260)
T KOG2739|consen 123 LFNCS 127 (260)
T ss_pred cccCC
Confidence 55554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0082 Score=53.71 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=53.5
Q ss_pred ecCHHHHhcccccceeeeecCCCccccccCCCCCC--CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-
Q 003936 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD- 82 (785)
Q Consensus 9 ~i~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~- 82 (785)
.|+..+|.++++|+.+.+.. .+ ..+....+. ++|+.+.+.++ +..++. ..++.|+.+.+.. .+..++.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred EECHHHHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence 46778999999999998875 33 456665555 57888887764 666666 4555677777765 4444433
Q ss_pred cccCCCCCcEEecCCCccccCCC-CCccccccceecccc
Q 003936 83 DVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGY 120 (785)
Q Consensus 83 ~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~ 120 (785)
.|..+++|+.+++..+ +..... .+..+ +|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3566777777777554 221111 35555 666666654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=51.74 Aligned_cols=108 Identities=18% Similarity=0.306 Sum_probs=58.7
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLV 553 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~ 553 (785)
+..+++|+.+.+.. .+...-...|.++++|+.+.+.++ +..++ ..|.++++|+.+.+.+ .+..++ ..|..++.|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44556888888774 344444556778888888888775 66663 4577777888888866 555555 3466788888
Q ss_pred EEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCCCCc
Q 003936 554 SLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 554 ~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
.+++..+ ++.++ ..+.+. .|+.+.+.. .++.++
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 8888765 66663 345565 788887765 344443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0011 Score=74.70 Aligned_cols=109 Identities=30% Similarity=0.384 Sum_probs=60.8
Q ss_pred cccCceEEEcCCC-Cccc--ccccccCCCCCcEEecCCC-ccccCCC-----CCccccccceeccccccC-ccccccccc
Q 003936 63 HWENLVSLKMPGS-KVTQ--LWDDVQNLVSLKRIDLKYS-KLLTKLP-----DLSLAQNLEILDLGYCSS-LTETHSSIQ 132 (785)
Q Consensus 63 ~l~~L~~L~L~~~-~i~~--l~~~~~~l~~L~~L~Ls~n-~~~~~~~-----~l~~l~~L~~L~Ls~n~~-~~~~~~~l~ 132 (785)
..+.|+.|.+..+ .++. +-......++|+.|+++++ ......+ ....+++|+.|+++++.. ....-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566777766665 3333 2233566777888887763 2222222 134557777788777762 222222232
Q ss_pred -cCCcccEEecCCCCCCCcC--CCcc-ccccccEEeccCCcCC
Q 003936 133 -YLNKLEVLDLDRCKSLTSL--PTSI-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 133 -~l~~L~~L~L~~~~~~~~~--p~~~-~l~~L~~L~ls~~~~l 171 (785)
.+++|++|.+.+|..++.. -... .+++|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3677777777777643321 1111 5677888888777644
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0035 Score=61.05 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=54.7
Q ss_pred ccccccceEEecCeeccccCcccCCCCCCcEEEccCC--cccc-ccccccCCCCCCEEEcccCCCCCC--CCcCcCCCCC
Q 003936 501 GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDN--NLQI-IPESLNQLSSLVSLKLSNNNLERI--PERLDPLSSL 575 (785)
Q Consensus 501 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n--~l~~-lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L 575 (785)
..+..|+.|.+.+..++++.. +..+++|+.|.+|.| .+.. ++.....+++|++|++++|+++.+ -..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 334455555555555554432 455788888888888 4432 555555668888888888887642 1125667778
Q ss_pred CEEeCCCCCCC
Q 003936 576 KYLDLFENNLD 586 (785)
Q Consensus 576 ~~L~l~~n~l~ 586 (785)
..|++.+|.-+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 88888888743
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0049 Score=35.68 Aligned_cols=19 Identities=58% Similarity=0.803 Sum_probs=9.4
Q ss_pred CcEEEccCCcccccccccc
Q 003936 529 LEWLVLSDNNLQIIPESLN 547 (785)
Q Consensus 529 L~~L~Ls~n~l~~lp~~l~ 547 (785)
|++|||++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.0016 Score=73.26 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=16.2
Q ss_pred ccccceeccccccCccc--cccccccCCcccEEecCC
Q 003936 110 AQNLEILDLGYCSSLTE--THSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 110 l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~ 144 (785)
++.|+.|.+.+|..... +-......++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555555443332 223344455555555554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.007 Score=35.03 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=12.2
Q ss_pred CCCEEEcccCCCCCCCCcCc
Q 003936 551 SLVSLKLSNNNLERIPERLD 570 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~ 570 (785)
+|++|+|++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.015 Score=31.19 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=6.0
Q ss_pred CCCEEeCCCCCCCCCc
Q 003936 574 SLKYLDLFENNLDRIP 589 (785)
Q Consensus 574 ~L~~L~l~~n~l~~lp 589 (785)
+|+.|++++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.026 Score=30.21 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=6.1
Q ss_pred CCCEEEcccCCCCCCC
Q 003936 551 SLVSLKLSNNNLERIP 566 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp 566 (785)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.0028 Score=60.17 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=73.4
Q ss_pred cccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEe
Q 003936 500 IGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLD 579 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 579 (785)
+......+.||++.|++..+-..|+.++.|..||++.|.+..+|..++.+..+..+++.+|+.+..|.+.+..+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 33455667788888888777777888888999999999999999999999899999999999999999999999999999
Q ss_pred CCCCCC
Q 003936 580 LFENNL 585 (785)
Q Consensus 580 l~~n~l 585 (785)
..++++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 999874
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.0035 Score=68.87 Aligned_cols=175 Identities=26% Similarity=0.307 Sum_probs=106.7
Q ss_pred CcEEEeccccCCCc----CCcccCCcccchhhhccCccccccC-----hhhhh--hhhcccccccCCCCcc----CCccc
Q 003936 412 LTSLEIIDCKKLER----LPDELGNLEALEELRVEGTGIREVP-----KSLAQ--LALSKLKLKKCSSFES----LPSRL 476 (785)
Q Consensus 412 L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~n~i~~lp-----~~~~~--l~L~~L~l~~~~~~~~----lp~~~ 476 (785)
+..|.+.+|.+... +-..+...+.|+.|++++|.+.... ..+.. ..++.+++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666665443 2233455667777777777766111 11111 1255566666554432 33334
Q ss_pred cCCCCCCEEEeeCCcCcc----cCCCccc----cccccceEEecCeecccc-----CcccCCCCC-CcEEEccCCcccc-
Q 003936 477 YVSKSLTSLEIIDCKNFM----RLPDEIG----NLEYLKVLTIKGTAIREV-----PESLGQLSS-LEWLVLSDNNLQI- 541 (785)
Q Consensus 477 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~L~~n~l~~l-----p~~~~~l~~-L~~L~Ls~n~l~~- 541 (785)
.....++.++++.|.+.. .++..+. ...+++.|.+.++.++.. -..+...++ +..|++..|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445677777887777632 1222333 467788888888777621 233445555 7778888887763
Q ss_pred ----ccccccCC-CCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 ----IPESLNQL-SSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 ----lp~~l~~l-~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.+.+..+ ..++.++++.|.++. +.+.+..+..++.+.+++|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44556666 778888999888874 4556677778888888888865
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.0029 Score=69.60 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=63.1
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccc-cceEEecCeeccc-----cCcccCCC-CCCcEEEccCCcccc-----cc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEY-LKVLTIKGTAIRE-----VPESLGQL-SSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~Ls~n~l~~-----lp 543 (785)
.++++|++.+|.+... +-..+...+. +.+|++.+|.+.. +.+.+..+ ..++.++++.|.+++ +.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 4555555655554321 1112333344 5567777776652 33445556 678999999998874 55
Q ss_pred ccccCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~ 584 (785)
..+..++.++.|.+++|.+.. +-..+..-..+..+-+.++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 667778899999999998863 12223333445555555444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.014 Score=55.66 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=52.4
Q ss_pred ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEe
Q 003936 62 LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
...++.+.||++.|++..+-..|+.++.|..|+++.|.+-....++.....++.+++..|. ....|.+++..+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 4455666677776666666556666666666777666533322256666666666666554 556666677777777766
Q ss_pred cCCCC
Q 003936 142 LDRCK 146 (785)
Q Consensus 142 L~~~~ 146 (785)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 66644
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.28 Score=29.54 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCCCCCCccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~ 591 (785)
+++|++|++++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888888888888754
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.28 Score=29.54 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCCCCCCccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~ 591 (785)
+++|++|++++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888888888888754
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.22 Score=30.01 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=13.9
Q ss_pred CCCCCEEEcccCCCCCCCCc
Q 003936 549 LSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~ 568 (785)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.22 Score=30.01 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=13.9
Q ss_pred CCCCCEEEcccCCCCCCCCc
Q 003936 549 LSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~ 568 (785)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.28 Score=29.37 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=15.3
Q ss_pred CCCCEEeCCCCCCCCCccc
Q 003936 573 SSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 573 ~~L~~L~l~~n~l~~lp~~ 591 (785)
++|++|++++|+|+++|++
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4688888888888888875
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.074 Score=49.95 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=46.0
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCCcCCCC
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~~~l~~ 173 (785)
..++.+|.+++.+..+--+.+.+++.++.|.+.+|......--.. -.++|+.|++++|+.+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 357888888877766666778888888888888887665322111 467899999999987664
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.74 E-value=0.22 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=20.5
Q ss_pred CCCCcEEEeccccCCCc-CCcccCCcccchhhhccC
Q 003936 409 FKSLTSLEIIDCKKLER-LPDELGNLEALEELRVEG 443 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~ 443 (785)
.++|+.|++++|+-.+. --..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 46677777777754332 223455666677766655
|
|
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=84.12 E-value=0.79 Score=25.62 Aligned_cols=19 Identities=58% Similarity=1.001 Sum_probs=16.8
Q ss_pred CceEEEcCCCCcccccccc
Q 003936 66 NLVSLKMPGSKVTQLWDDV 84 (785)
Q Consensus 66 ~L~~L~L~~~~i~~l~~~~ 84 (785)
+|.+|+|.+++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5889999999999999875
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=83.64 E-value=0.72 Score=27.68 Aligned_cols=18 Identities=50% Similarity=0.739 Sum_probs=14.3
Q ss_pred CCCCEEEcccCCCCCCCC
Q 003936 550 SSLVSLKLSNNNLERIPE 567 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~lp~ 567 (785)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888886
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 785 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 2e-10 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 2e-09 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 9e-05 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-44
Identities = 74/348 (21%), Positives = 135/348 (38%), Gaps = 60/348 (17%)
Query: 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSE 342
+L D L Q + ++E +
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNNP-QIETRTGRA 67
Query: 343 LEYISSSIFKLKSV--ESIEISNCSNLKGFPEIPFC-------NIDGSGIERIPSSVLKL 393
L+ + + ++E+ + L FP+ F ID +G+ +P ++ +
Sbjct: 68 LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF 126
Query: 394 NK-------CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEA---------LE 437
+ L +LP+S+ L L I C +L LP+ L + +A L+
Sbjct: 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 438 ELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP 497
LR+E TGIR +P S+A L ++L SL+I + L
Sbjct: 187 SLRLEWTGIRSLPASIANL-----------------------QNLKSLKIRNSP-LSALG 222
Query: 498 DEIGNLEYLKVLTIKG-TAIREVPESLGQLSSLEWLVLSD-NNLQIIPESLNQLSSLVSL 555
I +L L+ L ++G TA+R P G + L+ L+L D +NL +P +++L+ L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 556 KLSNN-NLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSE 602
L NL R+P + L + + + + ++ ++ P + P+E
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR---PVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 2e-40
Identities = 68/358 (18%), Positives = 117/358 (32%), Gaps = 62/358 (17%)
Query: 110 AQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCS 169
+ E L ++L H + + D +R S S ++ R
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66
Query: 170 NLKNLPK----MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIF 225
LK T L L V + + P LS++ + I + L + ++
Sbjct: 67 ALKATADLLEDATQPGRV-ALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQ 124
Query: 226 KLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSL 285
+ L+ L + + +LP+ L
Sbjct: 125 QFA-----------GLETLTLARNPL---------------------RALPASIASLNRL 152
Query: 286 TSLEIIDCPNFERLPDELGN---------LQALNRLIIDGTAIRELPEGLGQLALLSKLE 336
L I CP LP+ L + L L L ++ T IR LP + L L L+
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 337 LKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS-SVLKLNK 395
++N L + +I L +E +++ C+ L+ +P L L
Sbjct: 213 IRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP---------IFGGRAPLKRLILKD 262
Query: 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSL 453
CS L +LP + L L++ C L RLP + L A + V ++ +
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-39
Identities = 72/336 (21%), Positives = 127/336 (37%), Gaps = 21/336 (6%)
Query: 193 IEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNID 252
+ S L L + + Q + +R +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----------- 49
Query: 253 GTRSKEQPSSELKLKKCPRPESLPS--GQCMFKSLTSLEIIDCPNFERLPDELGNLQALN 310
R + +++ + ++ +LE+ + PD+ L L
Sbjct: 50 -WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQ 107
Query: 311 RLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGF 370
+ ID + ELP+ + Q A L L L L + +SI L + + I C L
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTEL 166
Query: 371 PEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE 429
PE + D SG + ++ L + + + SLP+S+ ++L SL+I + L L
Sbjct: 167 PEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA 224
Query: 430 LGNLEALEELRVEG-TGIREVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEI 487
+ +L LEEL + G T +R P A L +L LK CS+ +LP ++ L L++
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 488 IDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523
C N RLP I L ++ + ++ +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 56/315 (17%), Positives = 111/315 (35%), Gaps = 50/315 (15%)
Query: 332 LSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVL 391
L + + L + + + + + + + + +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-------------NPQI 60
Query: 392 KLNKCSKLESLPSSL--CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREV 449
+ L++ L +LE+ L + PD+ L L+ + ++ G+ E+
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMEL 119
Query: 450 PKSLAQL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKV 508
P ++ Q L L L + +LP+ + L L I C LP+ + + +
Sbjct: 120 PDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTD---- 174
Query: 509 LTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568
L +L+ L L ++ +P S+ L +L SLK+ N+ L +
Sbjct: 175 ----------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 569 LDPLSSLKYLDLFENN-LDRIPE-----------YLRSFP--TSIPSEFTSLR-LSV-DL 612
+ L L+ LDL L P L+ ++P + L L DL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 613 RNCLKLD--PNELSE 625
R C+ L P+ +++
Sbjct: 285 RGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 8e-29
Identities = 68/290 (23%), Positives = 101/290 (34%), Gaps = 49/290 (16%)
Query: 57 KTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPD-LSLAQNLEI 115
L V+L++ + Q D L L+ + + + L +LPD + LE
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLET 131
Query: 116 LDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLP 175
L L L +SI LN+L L + C LT LP + S L NL
Sbjct: 132 LTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDA----SGEHQGLVNL- 185
Query: 176 KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
+L L GI LP+SI L N+ L I + L + +I L LE
Sbjct: 186 --------QSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLE---- 232
Query: 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN 295
EL L+ C + P L L + DC N
Sbjct: 233 ---------------------------ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 296 FERLPDELGNLQALNRLIIDG-TAIRELPEGLGQLALLSKLELKNCSELE 344
LP ++ L L +L + G + LP + QL + + + +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 38/232 (16%)
Query: 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLAL 458
+ S +L L D L +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNAD------------------ 42
Query: 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNL--EYLKVLTIKGTAI 516
+ S + + +E + D + + L ++ +
Sbjct: 43 ----RNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93
Query: 517 REVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLK 576
+ P+ +LS L+ + + L +P+++ Q + L +L L+ N L +P + L+ L+
Sbjct: 94 PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153
Query: 577 YLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRN--CLKLDPNELSEI 626
L + L P + + + L N L+L+ + +
Sbjct: 154 ELSIRACPE------LTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSL 198
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 9e-40
Identities = 94/571 (16%), Positives = 175/571 (30%), Gaps = 74/571 (12%)
Query: 107 LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLV 164
L + L L + +I L +L+VL T
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSE 377
Query: 165 LRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISS 222
R + KM + + LL I P + L + I +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL-----KDTQIGN 432
Query: 223 SIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282
++ F+ I R LQ + + + + + E+
Sbjct: 433 LTNRITFISKA-IQRLTKLQIIYFANSPFTYD-NIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSE 342
K LT +E+ +CPN +LPD L +L L L I + L+ + +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD-DEDTGPK 549
Query: 343 LEYI------------SSSIFKLKSVESIEISNCSNLKGFPEIPFC------NIDGSGIE 384
++ S+S+ K+ + ++ + ++ +D + IE
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIE 608
Query: 385 RIPSSVLKLNK--------CSKLESLPSSLCMFKSLTSLEIIDCK--KLERLPDELG--- 431
IP +KL+ +P+ KS+ + +D K+ +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 432 ---NLEALEELRVEGTGIREVPKSLAQLA--LSKLKLKKCSSFESLPSRLYVSK-----S 481
+ + I++ P L +S + L S+P K +
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKN 726
Query: 482 LTSLEIIDCKN--FMRLPDEI--GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDN 537
L ID + L D+ L YL + + P S L+ +
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 538 -------NLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
L+ P + SL+ L++ +N++ ++ E+L L LD+ +N I
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID- 843
Query: 591 YLRSFPTSIPSEFTSLRLSV--DLRNCLKLD 619
+ S I + L D+R C L
Sbjct: 844 -VTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 6e-29
Identities = 75/557 (13%), Positives = 153/557 (27%), Gaps = 125/557 (22%)
Query: 82 DDVQNLVSLKR-IDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVL 140
D + L ++ +D K + + + ++ + + + ++ L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328
Query: 141 DLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSI 200
L + +P +I L L L
Sbjct: 329 SLAGFGAKGRVPDAI-------------GQLTEL---------KVLSFGTHSETVSGRLF 366
Query: 201 KCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQP 260
++ +R I K+ + L ++
Sbjct: 367 GDEELTPDMS---EERKHRIRMHYKKMF------LDYDQRLNLSDL-------------- 403
Query: 261 SSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN-FERLPDELGNLQALNRLIIDGTAI 319
+ + + P + + SL +I + N + + L L + +
Sbjct: 404 -LQDAINRNPEMKPIKKDS--RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460
Query: 320 RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNID 379
+ + E S LK + +E+ NC N+ P+
Sbjct: 461 TYDNIAVDWEDAN----SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD------- 509
Query: 380 GSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEEL 439
L +L+SL + S L+ RL D+ ++
Sbjct: 510 ------------FLYDLPELQSLNIACNRGISAAQLKA----DWTRLADDEDTGPKIQIF 553
Query: 440 RVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC-KNFMRLPD 498
+ + E P S +L K + L ++DC N +R +
Sbjct: 554 YMGYNNLEEFPAS---ASLQK---------------------MVKLGLLDCVHNKVRHLE 589
Query: 499 EIGNLEYLKVLTIKGTAIREVPESLGQ-LSSLEWLVLSDNNLQIIPE--SLNQLSSLVSL 555
G L L + I E+PE +E L S N L+ IP + + + S+
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649
Query: 556 KLSNNNLERIPERLDP------LSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLS 609
S N + + + + L N ++ FPT + + + +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-------IQKFPTELFATGSPIST- 701
Query: 610 VDLRNCLKLDPNELSEI 626
+ L N ++ I
Sbjct: 702 ------IILSNNLMTSI 712
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-38
Identities = 72/559 (12%), Positives = 170/559 (30%), Gaps = 108/559 (19%)
Query: 86 NLVSLKRIDLKYSKLLTKLPD-LSLAQNLEILDLGY----CSSLTETHSSIQYLNKLEVL 140
+ + + L+ ++PD + LE+L LG + I E
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 141 DLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKNLPKMTSCHLRST-LPLLGVGIEEL 196
R + L + + K++ K + L+ T + L I +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 197 PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRS 256
++ L+ + + + + + ++ + E + +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY-------------------- 238
Query: 257 KEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDG 316
++ K LT +E+ +CPN +LP L L + + +
Sbjct: 239 ----------------KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
Query: 317 TAIRELPEGLGQLALLSKLELKNCSELEY------------ISSSIFKLKSVESIEISNC 364
+ L+ + +++ + +S+ K+K + +E
Sbjct: 283 NRGISGEQLKDDWQALA--DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Query: 365 SNLKGFPEIPFCNIDGSGIERIPS-SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK-- 421
L+G + L L ++ +P++ +E +
Sbjct: 341 -QLEGKLP---------AFGSEIKLASLNLAYN-QITEIPANF--CGFTEQVENLSFAHN 387
Query: 422 KLERLPD--ELGNLEALEELR--------VEGTGIREVPKSLAQLA-LSKLKLKKCSSFE 470
KL+ +P+ + ++ + + V+G + + + +S + L
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS 446
Query: 471 SLPSRLYVSKSLTSLEIID----------CKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520
P L+ + + L I+ + + N L + ++ + ++
Sbjct: 447 KFPKELF--STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504
Query: 521 ESL--GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLS-------NNNLERIPERLDP 571
+ L L + LS N+ P S+L + N L PE +
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 572 LSSLKYLDLFENNLDRIPE 590
SL L + N++ ++ E
Sbjct: 565 CPSLTQLQIGSNDIRKVNE 583
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-37
Identities = 81/541 (14%), Positives = 157/541 (29%), Gaps = 89/541 (16%)
Query: 112 NLEILDLGYCSSLTETHSSIQYLNKLEVLDLD----RCKSLTSLPTSIHSKYLKRLVLRG 167
+ L L + +I L +LEVL L + P I + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA--NMSDEQKQ 139
Query: 168 CSNLKNLPKMTSCHLRSTLPLLGV-------GIEELPSSIKCLSNIGELLIYSCKRLENI 220
+ R L + + S + ++ S + +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFV 198
Query: 221 SSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC 280
S ++ +L L+ M + E + + + ++
Sbjct: 199 SKAVMRLT-----------KLRQFYMGNSPFVAENICEAWEN-ENSEYAQQYKTEDLKWD 246
Query: 281 MFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNC 340
K LT +E+ +CPN +LP L L + + + + L+ +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA--DAPVG 304
Query: 341 SELEYISSSIFKLKSVE-SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399
+++ I LK+ + L +L+ +L
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLG---------------------MLECLYN-QL 342
Query: 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDEL-GNLEALEELRVEGTGIREVPKSLAQLAL 458
E + L SL + ++ +P G E +E L ++ +P ++
Sbjct: 343 EGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401
Query: 459 SKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR 517
S + + S + S +D KNF L + + + I
Sbjct: 402 SVMS------------AIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSINLSNNQIS 446
Query: 518 EVP-ESLGQLSSLEWLVLSDNNL--------QIIPESLNQLSSLVSLKLSNNNLERIPE- 567
+ P E S L + L N L + E+ L S+ L N L ++ +
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506
Query: 568 -RLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
R L L +DL N+ + P ++L+ +RN N
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQP--------LNSSTLK-GFGIRNQRDAQGNRTLRE 557
Query: 627 I 627
Sbjct: 558 W 558
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-33
Identities = 58/437 (13%), Positives = 133/437 (30%), Gaps = 67/437 (15%)
Query: 199 SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE 258
S+ + L + + +I +L LE + + + S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG---SHGEKVNERLFGPKGISAN 132
Query: 259 QPSSELKLKKCPRPESLPS--GQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDG 316
+ + + ++ + F L I P + + ++
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192
Query: 317 TAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFC 376
I + + + +L L + + N + ++ ++
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN--------------------- 231
Query: 377 NIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEAL 436
+ ++ K LT +E+ +C L +LP L L +
Sbjct: 232 ----------------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275
Query: 437 EELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFMR 495
+ + V QL L E + +Y+ +L + +
Sbjct: 276 QLINVACNRGISGE----QLKDDWQALADAPVGEKI-QIIYIGYNNLKTFPV-------- 322
Query: 496 LPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVS 554
+ ++ L +L + + G L L L+ N + IP + + +
Sbjct: 323 -ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381
Query: 555 LKLSNNNLERIPERLDP--LSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDL 612
L ++N L+ IP D +S + +D N + + ++F P+ F + +S
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFKGINVSS-- 437
Query: 613 RNCLKLDPNELSEIIKD 629
+ L N++S+ K+
Sbjct: 438 ---INLSNNQISKFPKE 451
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 105/582 (18%), Positives = 184/582 (31%), Gaps = 134/582 (23%)
Query: 86 NLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDR 144
V+L+ +D+ + T +P L L+ LD+ L+ + +I +L++L++
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISS 256
Query: 145 CKSLT-SLPTSIHSKYLKRLVLRGC--------SNLKNLPKMTSCHLRSTLPLLGVGIEE 195
+P L+ L L +T L G
Sbjct: 257 N-QFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYG----A 309
Query: 196 LPSSIKCLSNIGELLIYSCKRLENIS-----SSIFKLQFLESIRIHR------------- 237
+P S + L + S N S ++ K++ L+ + +
Sbjct: 310 VPPFFGSCSLLESLALSSN----NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 238 -CPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS--GQCMFKSLTSLEIIDCP 294
+L L++ S N G + Q +L L + +
Sbjct: 366 LSASLLTLDLSSNNFSG--------------------PILPNLCQNPKNTLQELYLQNN- 404
Query: 295 NFE-RLPDELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELE-YISSSIF 351
F ++P L N L L + + +P LG L+ L L+L LE I +
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELM 463
Query: 352 KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL--------- 402
+K++E++ + +L G IPS L+ C+ L +
Sbjct: 464 YVKTLETLILDFN-DLTG---------------EIPSG---LSNCTNLNWISLSNNRLTG 504
Query: 403 --PSSLCMFKSLTSL-------------EIIDCKKLERL-----------PDELGNLEAL 436
P + ++L L E+ DC+ L L P +
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 437 EELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRL 496
K+ +L + I
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 497 PDEIGNLEYLKVL-----TIKGTAIREVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLS 550
N + L + G +P+ +G + L L L N++ IP+ + L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 551 SLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPE 590
L L LS+N L+ RIP+ + L+ L +DL NNL IPE
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-30
Identities = 129/633 (20%), Positives = 214/633 (33%), Gaps = 133/633 (21%)
Query: 60 NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPD---LSLAQNLEIL 116
++L L SL + S + + SL +DL + L + L L+ L
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 117 DLGYCS-SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS----KYLKRLVLRGC--- 168
++ + S LN LEVLDL + LK L + G
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 169 -----SNLKNLPK--MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLE-NI 220
S NL ++S + + +P LG S + L I K L +
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLG-----------DCSALQHLDISGNK-LSGDF 239
Query: 221 SSSIFKLQFLESIRIH-----------RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKC 269
S +I L+ + I +LQ+L + G
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG---------------- 283
Query: 270 PRPESLPSGQCMFKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIR-ELP-EGL 326
P+ L +LT L++ +F +P G+ L L + ELP + L
Sbjct: 284 EIPDFLSG---ACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 327 GQLALLSKLELKNCSELE-YISSSIFKLK-SVESIEISNCSNLKGFPEIP--FCNIDGSG 382
++ L L+L + S+ L S+ ++++S+ N G I C +
Sbjct: 340 LKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSN-NFSG--PILPNLCQNPKNT 395
Query: 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLE-RLPDELGNLEALEELRV 441
++ L L +P +L L SL + L +P LG+L L +L++
Sbjct: 396 LQ-----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKL 449
Query: 442 EG---TGIREVPKSLAQL-ALSKLKLKKCSSFE-SLPSRLYVSKSLTSLEIID-CKNFM- 494
G E+P+ L + L L L +PS L + T+L I N +
Sbjct: 450 WLNMLEG--EIPQELMYVKTLETLILDFND-LTGEIPSGL---SNCTNLNWISLSNNRLT 503
Query: 495 -RLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSS 551
+P IG LE L +L + + +P LG SL WL L+ N IP ++ + S
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 552 LVS--------------------LKLSNNNLE---RIPERLDPLSSLKYLDLFENNLD-R 587
++ + N LE E+L+ LS+ ++
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 588 IPEYLRSFPT-------------SIPSEFTSLR 607
+ + IP E S+
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 105/570 (18%), Positives = 172/570 (30%), Gaps = 162/570 (28%)
Query: 86 NLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTET---HSSIQYLNKLEVLDL 142
+L L+ + L S + + + +L LDL SL+ +S+ + L+ L++
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNV 133
Query: 143 DRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202
S ++L+ L +++ +
Sbjct: 134 SSNTLDFPGKVSG---------GLKLNSLEVL-DLSANSISG----------ANVVGWVL 173
Query: 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSS 262
C L+ L + I G
Sbjct: 174 SDG--------------------------------CGELKHLAISGNKISG--------- 192
Query: 263 ELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIR- 320
+ +C +L L++ NF +P LG+ AL L I G +
Sbjct: 193 -----------DVDVSRC--VNLEFLDVSSN-NFSTGIP-FLGDCSALQHLDISGNKLSG 237
Query: 321 ELPEGLGQLALLSKLELKNCSELEYISSSI--FKLKSVESIEISNCSNLKGFPEIPFCNI 378
+ + L L + + I LKS++ + ++
Sbjct: 238 DFSRAISTCTELKLLNISSNQ----FVGPIPPLPLKSLQYLSLAE------------NKF 281
Query: 379 DGSGIERIPSSVLKLNKCSKLESL-----------PSSLCMFKSLTSLEIIDCKKLERLP 427
G IP + C L L P L SL + LP
Sbjct: 282 TGE----IPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 428 DE-LGNLEALEELRVEGTGIR-EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485
+ L + L+ L + E+P+SL L S SL +L
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNL----------------------SASLLTL 373
Query: 486 EIIDCKNFMRLPDEIGN--LEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ-I 541
++ + + L+ L ++ ++P +L S L L LS N L
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 542 IPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPEYLRSFPT-- 597
IP SL LS L LKL N LE IP+ L + +L+ L L N+L IP L +
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 598 -----------SIPSEFTSLR-LSV-DLRN 614
IP L L++ L N
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSN 523
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 4e-20
Identities = 71/375 (18%), Positives = 128/375 (34%), Gaps = 79/375 (21%)
Query: 299 LPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISS--SIFKLKSV 356
+ L +L L L + + I G A L+ L+L S +++ S+ +
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 357 ESIEISNCSNLKGFPEIP--------------FCNIDGSGIERIPSSVLKLNKCSKLESL 402
+ + +S+ L ++ +I G+ + + C +L+ L
Sbjct: 129 KFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGA----NVVGWVLSDGCGELKHL 183
Query: 403 ---------PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKS 452
+ +L L++ +P LG+ AL+ L + G + + ++
Sbjct: 184 AISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA 242
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIK 512
++ L L I + +P L+ L+ L++
Sbjct: 243 ISTC-----------------------TELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 513 GTAIR-EVPESL-GQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIP-E 567
E+P+ L G +L L LS N+ +P S L SL LS+NN +P +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 568 RLDPLSSLKYLDLFENNL-DRIPEYLRSFPTS--------------IPSEFTSLRLSVDL 612
L + LK LDL N +PE L + S I + L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TL 396
Query: 613 RNCLKLDPNELSEII 627
+ L L N + I
Sbjct: 397 QE-LYLQNNGFTGKI 410
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 5e-18
Identities = 87/409 (21%), Positives = 142/409 (34%), Gaps = 94/409 (22%)
Query: 220 ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279
+SSS+ L L+ L + + +I+G S+
Sbjct: 69 VSSSLLSL-----------TGLESLFLSNSHING--------------------SVSG-- 95
Query: 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
FK SL +D N L + L LG + L L + +
Sbjct: 96 --FKCSASLTSLDLSR--------------NSL---SGPVTTLTS-LGSCSGLKFLNVSS 135
Query: 340 CSELEYISSSIF-KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSK 398
+ S KL S+E +++S +I G+ + + C +
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSA------------NSISGA----NVVGWVLSDGCGE 179
Query: 399 LESL---------PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-E 448
L+ L + +L L++ +P LG+ AL+ L + G + +
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238
Query: 449 VPKSLAQL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYL 506
++++ L L + +P KSL L + + K +PD + G + L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 507 KVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ--IIPESLNQLSSLVSLKLSNNNLE 563
L + G VP G S LE L LS NN + ++L ++ L L LS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 564 -RIPERLDPLS-SLKYLDLFENNLD-RIPEYLRSFPTSIPSEFTSLRLS 609
+PE L LS SL LDL NN I + + + L L
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPIL---PNLCQNPKNTLQELYLQ 402
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 518 EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE-RIPER--LDPLSS 574
V SL L+ LE L LS++++ +SL SL LS N+L + L S
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127
Query: 575 LKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615
LK+L++ N LD S + SL +DL
Sbjct: 128 LKFLNVSSNTLD------FPGKVSGGLKLNSLE-VLDLSAN 161
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-32
Identities = 103/512 (20%), Positives = 175/512 (34%), Gaps = 110/512 (21%)
Query: 105 PDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRL 163
++S E L + S+LTE + + + + P + +
Sbjct: 6 RNVSNTFLQEPLR--HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 164 VLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSS 223
LR C + + L L +G+ LP L E L+ SC L +
Sbjct: 64 RLRDCLDRQA----------HELELNNLGLSSLPELPPHL----ESLVASCNSLTELPEL 109
Query: 224 IFKLQFLESIRIHRC------PNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS 277
L+ L + P L++L + + + E LP
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL---------------------EKLPE 148
Query: 278 GQCMFKSLTSLEIIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKL 335
++ + L+IID N ++LPD +L+ + + ELPE L L L+ +
Sbjct: 149 ----LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEELPE-LQNLPFLTAI 200
Query: 336 ELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN- 394
N S L+ + L ESI N L+ PE+ + +
Sbjct: 201 YADNNS-LKKLPDLPLSL---ESIVAGNN-ILEELPELQNL-----------PFLTTIYA 244
Query: 395 KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA 454
+ L++LP SL +L + D L LP+ +L L+ +G+ E+P +L
Sbjct: 245 DNNLLKTLPDLPP---SLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPNLY 300
Query: 455 QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGT 514
L S ++ SL SL L + + K + LP LE L
Sbjct: 301 YLNASSNEI------RSLCDLP---PSLEELNVSNNK-LIELPALPPRLE---RLIASFN 347
Query: 515 AIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQL----------------SSLVSLKLS 558
+ EVPE +L+ L + N L+ P+ + +L L +
Sbjct: 348 HLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404
Query: 559 NNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
N L P+ S++ L + + E
Sbjct: 405 TNPLREFPDIP---ESVEDLRMNSERVVDPYE 433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-30
Identities = 102/479 (21%), Positives = 169/479 (35%), Gaps = 99/479 (20%)
Query: 193 IEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP--NLQFLEMPSCN 250
+ E+P + + + E + N + + + R+ C LE+ +
Sbjct: 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 251 IDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALN 310
+ SLP L SL + C + LP+ +L++L
Sbjct: 83 L---------------------SSLPEL---PPHLESL-VASCNSLTELPELPQSLKSLL 117
Query: 311 RLIIDGTAIRELPEGLGQLAL----LSKL-ELKNCSELEY-------ISSSIFKLKSVES 358
+ A+ +LP L L + L KL EL+N S L+ + S+E
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 177
Query: 359 IEISNCSNLKGFPEIPFC------NIDGSGIERIPSSVLKLNKCS----KLESLPSSLCM 408
I N L+ PE+ D + ++++P L L LE LP
Sbjct: 178 IAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE---- 232
Query: 409 FKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466
++L L I L+ LPD +LEAL T + E+P+SL L +S+
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF--- 289
Query: 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQL 526
S LP +L L + L D +LE L + + E+P
Sbjct: 290 SGLSELP------PNLYYLNASSNE-IRSLCDLPPSLEELN---VSNNKLIELPALPP-- 337
Query: 527 SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERL----------------D 570
LE L+ S N+L +PE +L L + N L P+ +
Sbjct: 338 -RLERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 571 PLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKD 629
+LK L + N L P+ IP LR++ + +E ++ ++D
Sbjct: 394 LPQNLKQLHVETNPLREFPD--------IPESVEDLRMNSERVVDPYEFAHETTDKLED 444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 71/363 (19%)
Query: 300 PDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESI 359
P + N L + + + E+P + ++ + + +
Sbjct: 5 PRNVSNTF-LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID 419
+ +C + + + L+LN L SLP L SL +
Sbjct: 64 RLRDCLDRQ-------------------AHELELNNL-GLSSLPELP---PHLESL-VAS 99
Query: 420 CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPS--RLY 477
C L LP+ +L++L + ++P L L +S +L+K ++ +
Sbjct: 100 CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID 159
Query: 478 VS--------KSLTSLEIIDCK-NFMRLPDEIGNLEYLKVLTIKGTAIREVPESL----- 523
V SLE I N + E+ NL +L + +++++P+
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLES 219
Query: 524 --------------GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERL 569
L L + +N L+ +P+ SL +L + +N L +PE
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP 276
Query: 570 DPLSSLKYLDLFENNLDRIPEYLRSFP------TSIPSEFTSLRLSVDLRNCLKLDPNEL 623
L+ L + + L +P L S+ SL L + N+L
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE-------ELNVSNNKL 329
Query: 624 SEI 626
E+
Sbjct: 330 IEL 332
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 494 MRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ--IIPESLNQLS- 550
M + + +L+ + + E+P + S + + + P + Q
Sbjct: 1 MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 551 -----------SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRS 594
L+L+N L +PE L+ L N+L +PE +S
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQS 112
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-31
Identities = 111/576 (19%), Positives = 194/576 (33%), Gaps = 82/576 (14%)
Query: 89 SLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCK 146
++ ++L +++L +LP + L LD+G+ + Q L L+VL+L +
Sbjct: 26 NITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 147 SLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEEL-PSSIK 201
L+ L L L L +++ + ++ TL L G+ +
Sbjct: 85 -LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 202 CLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPS 261
L N+ ELL+ + K ++ + S + +L+ LE+ S I + P
Sbjct: 143 QLENLQELLLSNNK-IQALKSEELDIFAN--------SSLKKLELSSNQI----KEFSPG 189
Query: 262 S--------ELKLKKCPRPESLPSGQCMFKSLTSLEIID---CPNFERLPDE-LGNLQ-- 307
L L SL C+ + TS+ + + L+
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWT 248
Query: 308 ALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSN 366
L L + + + L L L+ + S S+ L +V + + +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--S 306
Query: 367 LKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERL 426
+ L K++ S K L L + D
Sbjct: 307 FT-------------------KQSISLASLPKID--DFSFQWLKCLEHLNMEDNDIPGIK 345
Query: 427 PDELGNLEALEELRVEGTGI------REVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480
+ L L+ L + + E SLA L L L K +
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 481 SLTSLEIIDCKNFMRLP-DEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNN 538
L L++ + L E LE + + + ++ S + SL+ L+L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 539 LQ---IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRS 594
L+ P L +L L LSNNN+ I + L+ L L+ LDL NNL R+ + +
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK--HA 523
Query: 595 FPTSIPSEFTSL-RLSVDLRNCLKLDPNELSEIIKD 629
P L L + L L+ N EI +
Sbjct: 524 NPGGPIYFLKGLSHLHI-----LNLESNGFDEIPVE 554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-30
Identities = 117/600 (19%), Positives = 228/600 (38%), Gaps = 82/600 (13%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
L SL + + +++L ++ Q L LK ++L++++L ++L D + A NL L L S
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNS 108
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPK--MT 178
++ L LDL L+S + L+ L+L ++ L +
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN-KIQALKSEELD 166
Query: 179 SCHLRS--TLPLLGVGIEEL-PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
S L L I+E P + + L + + + +++ + SIR
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226
Query: 236 ------------------HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS 277
+ NL L++ N++ + P+ E
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-------FAWLPQLEYFFL 279
Query: 278 GQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLE 336
+ L S + N L ++ + I ++ ++ + L L L
Sbjct: 280 EYNNIQHLFSHSLHGLFNVR----YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Query: 337 LKNCSELEYISSSIF-KLKSVESIEIS-NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN 394
+++ + I S++F L +++ + +S + ++L+ F ++ S + +L L
Sbjct: 336 MEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH-----ILNLT 389
Query: 395 KCSKLESLPSSLCMFKSLTSLEIIDCK--KLERL--PDELGNLEALEELRVEGTGIREV- 449
K K+ + S F L LE++D ++ + E LE + E+ + ++
Sbjct: 390 KN-KISKIESD--AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 450 PKSLAQL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDE-IGNLEY 505
S A + +L +L L++ + +++ S + L +L I+D N + D+ + LE
Sbjct: 447 RNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 506 LKVLTI---------KGTAIREVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSL 555
L++L + K L LS L L L N I E L L +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 556 KLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRN 614
L NNL +P + SLK L+L +N + + F +L +D+R
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE------KKVFGPAFRNLT-ELDMRF 618
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 103/580 (17%), Positives = 186/580 (32%), Gaps = 123/580 (21%)
Query: 88 VSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKS 147
VS + D + KL T++PD L N+ +L+L + ++ ++L LD+
Sbjct: 4 VSHEVADCSHLKL-TQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60
Query: 148 LTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIG 207
++ L + + LK L + L S L + +N+
Sbjct: 61 ISKLEPE---------LCQKLPMLKVL-NLQHNEL-SQLS---------DKTFAFCTNLT 100
Query: 208 ELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLK 267
EL + S ++ I ++ F + NL L++ +
Sbjct: 101 ELHLMSN-SIQKIKNNPFV----------KQKNLITLDLSHNGL---------------- 133
Query: 268 KCPRPESLPSGQCMFKSLTSLEIIDCPN--FERLPDE---LGNLQALNRLIIDGTAIREL 322
S G L +L+ + N + L E + +L +L + I+E
Sbjct: 134 -----SSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 323 PEG-LGQLALLSKLELKNCSELEYISSSIF---KLKSVESIEISNCSNLKGFPEIPFCNI 378
G + L L L N ++ + S+ ++ +SN L F +
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGL 245
Query: 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID---CKKLERLPDELGNLEA 435
+ + +L L+ L + + F L LE L L
Sbjct: 246 KWTNLT-----MLDLSYN-NLNVVGNDS--FAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 436 LEELRVEGTGIREVPKSLAQLALSKLKLKK--CSSFESLPSRLYVSKSLTSLEIIDCKNF 493
+ L ++ S + ++S L K SF+ L L L + D
Sbjct: 298 VRYLNLKR--------SFTKQSISLASLPKIDDFSFQWLK-------CLEHLNMEDNDIP 342
Query: 494 MRLPDEIGNLEYLKVLTIKGTAIREVPESLGQL-----SSLEWLVLSDNNLQ-IIPESLN 547
+ L LK L++ + + S L L L+ N + I ++ +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 548 QLSSLVSLKLSNNNLERIPER--LDPLSSLKYLDLFENNLDRIP----------EYLR-- 593
L L L L N + + L ++ + L N ++ + L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 594 ----SFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKD 629
S PS F LR +L L L N ++ I D
Sbjct: 463 RVALKNVDSSPSPFQPLR---NLTI-LDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 82/568 (14%), Positives = 161/568 (28%), Gaps = 121/568 (21%)
Query: 86 NLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYC--SSLTETHSSIQYLNKLEVLD 141
+L +DL ++ L + + Q NL+ L L +L I + L+ L+
Sbjct: 119 KQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 142 LDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIK 201
L + + L L + + L +L E
Sbjct: 178 LSSNQ-IKEFSPG---------CFHAIGRLFGL-FLNNVQLGPSLT-------EKLCLEL 219
Query: 202 CLSNIGELLIYSCKRLENISSSIF----------------KLQFLESIRIHRCPNLQFLE 245
++I L + + +L S++ F L + + P L++
Sbjct: 220 ANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 246 MPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGN 305
+ NI S L L + +S T I +
Sbjct: 279 LEYNNIQHLFSHS-------LHGLFNVRYLN----LKRSFTKQSISLASLPKIDDFSFQW 327
Query: 306 LQALNRLIIDGTAIRELPEG-LGQLALLSKLEL-KNCSELEYISSSIFK---LKSVESIE 360
L+ L L ++ I + L L L L + + L +++ F + +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 361 ISNCSNLKGFPEIPFCN-----------------IDGSGIERIPS-SVLKLNKCSKLESL 402
++ + F + G + + + L+ K L
Sbjct: 388 LTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQL 445
Query: 403 PSSLCMFKSLTSLEIID-----CKKLERLPDELGNLEALEELRVEGTGIREVP------- 450
+ F + SL+ + K ++ P L L L + I +
Sbjct: 446 TRNS--FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 451 KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID-------------CKNFMRL- 496
+ L L L L + + +Y K L+ L I++ K+ L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 497 -------------PDEIGNLEYLKVLTIKGTAIREVPESL--GQLSSLEWLVLSDNNLQI 541
N LK L ++ I V + + +L L + N
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
Query: 542 IPESLNQLSSLVSLKLSNNNLERIPERL 569
ES+ + + ++ N+ +
Sbjct: 624 TCESIAWFVNW--INETHTNIPELSSHY 649
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 56/384 (14%), Positives = 127/384 (33%), Gaps = 79/384 (20%)
Query: 5 NSEIQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHW 64
S +I+ ++F + L L N + G+ LK L++ +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNM--EDND-----IPGIKSNMFTGLIN----LKYLSLSN- 362
Query: 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCS 122
+ SL+ ++ L ++L +K ++K+ + + +LE+LDLG
Sbjct: 363 -SFTSLRTLTNETFVSL----AHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNE 416
Query: 123 -SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCH 181
T + L + + L K L + +L+ L +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS---------FALVPSLQRL-MLRRVA 465
Query: 182 LRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNL 241
L+ ++ PS + L N+ L + + + NI+ + L
Sbjct: 466 LK--------NVDSSPSPFQPLRNLTILDLSNN-NIANINDDML----------EGLEKL 506
Query: 242 QFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FERL 299
+ L++ N L + + + K L+ L I++ + F+ +
Sbjct: 507 EILDL-QHN--------------NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551
Query: 300 -PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK--LKS 355
+ +L L + + + LP L L L+ + + + +F ++
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRN 610
Query: 356 VESIEISN------CSNLKGFPEI 373
+ +++ C ++ F
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNW 634
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 89/539 (16%), Positives = 168/539 (31%), Gaps = 118/539 (21%)
Query: 86 NLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC--SSLTETHSSIQYLNKLEVLDLD 143
L + L + + T + + L S+ ++YLN L ++
Sbjct: 22 ALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSI----DGVEYLNNLTQINFS 76
Query: 144 RCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCL 203
+ LT + LKNL K+ + + I ++ + L
Sbjct: 77 NNQ-LTDIT-----------------PLKNLTKLVDILMNNNQ------IADITP-LANL 111
Query: 204 SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSE 263
+N+ L +++ + + +I + NL LE+ S I
Sbjct: 112 TNLTGLTLFNNQ-ITDIDP------------LKNLTNLNRLELSSNTI------------ 146
Query: 264 LKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELP 323
+ + LTSL+ + N L NL L RL I + ++
Sbjct: 147 ---------SDISA----LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 193
Query: 324 EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383
L +L L L N ++ + + +NL +++G+ +
Sbjct: 194 -VLAKLTNLESLIATNN-----------QISDIT--PLGILTNLDEL------SLNGNQL 233
Query: 384 ERIPSSVLKLNKCSKLESL------PSSLCMFKSLTSLEIIDCK--KLERLPDELGNLEA 435
+ I + L + L L S+L LT L + ++ + L L A
Sbjct: 234 KDIGT----LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTA 288
Query: 436 LEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490
L L + + ++ K+L L L + S SL L L +
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK-------LQRLFFYN- 340
Query: 491 KNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLS 550
N + + NL + L+ I ++ L L+ + L L+D P +
Sbjct: 341 -NKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 551 SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLS 609
S+ + + P + S D+ N E +F + + S
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 89/551 (16%), Positives = 173/551 (31%), Gaps = 77/551 (13%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
L L + ++ + D L L + L + + S + +LE L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETK 115
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKNLPKMTS 179
+ I L L+ L++ + S + L + L ++ +
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDL 173
Query: 180 CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239
LR + L S ++ I F+ L + +
Sbjct: 174 QFLRENPQVN------------------LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215
Query: 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDC-----P 294
N + M +C + + K E + + L + I +
Sbjct: 216 NSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS--IMEGLCDVTIDEFRLTYTN 272
Query: 295 NFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLK 354
+F + L ++ + + G +I+ L + S L + C L+ + L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS-LSIIRCQ-LKQFPT--LDLP 328
Query: 355 SVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTS 414
++S+ ++ F ++ ++ S L L++ L S
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPSL----------SYLDLSRN-ALSFSGCCSYSDLGTNS 377
Query: 415 LEIID--CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESL 472
L +D + LE L+ L + + ++ V + S+F SL
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE--------------FSAFLSL 423
Query: 473 PSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV--PESLGQLSSLE 530
L L+I + L L L + G + ++ ++L
Sbjct: 424 EK-------LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 531 WLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRI 588
+L LS L+ I + L L L +S+NNL + + L SL LD N ++
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 589 PEYLRSFPTSI 599
L+ FP S+
Sbjct: 537 KGILQHFPKSL 547
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 76/470 (16%), Positives = 151/470 (32%), Gaps = 70/470 (14%)
Query: 146 KSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEEL-PSSIKC 202
+ L+ +P I S K + L LK L + + L L IE + +
Sbjct: 21 QKLSKVPDDIPS-STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSS 262
L ++ L++ +++ S F +L+ L +
Sbjct: 79 LHHLSNLILTGNP-IQSFSPGSF----------SGLTSLENLVAVETKL----------- 116
Query: 263 ELKLKKCPRPESLPSGQCMFKSLTSLEIID----CPNFERLPDELGNLQALNRLIIDGTA 318
SL S L +L+ ++ + +LP NL L + +
Sbjct: 117 ----------ASLESF--PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 319 IRELPE----GLGQL-ALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI 373
I+ + L + + L++ +++I F+ + + + N +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223
Query: 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDC-----KKLERLPD 428
N+ G + R+ + + LE S+ + L + I +
Sbjct: 224 CLQNLAGLHVHRL--ILGEFKDERNLEIFEPSI--MEGLCDVTIDEFRLTYTNDFSDDIV 279
Query: 429 ELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEII 488
+ L + + + G I+ + L + +C + P+ L L+ +
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPT-----LDLPFLKSL 333
Query: 489 D-CKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE---SLGQLSSLEWLVLSDNNLQIIPE 544
N + + L L L + A+ S +SL L LS N I+
Sbjct: 334 TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393
Query: 545 SLNQLSSLVSLKLSNNNLERIPER--LDPLSSLKYLDLFENNLDRIPEYL 592
+ L L L ++ L+R+ E L L YLD+ N + +
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 90/552 (16%), Positives = 180/552 (32%), Gaps = 104/552 (18%)
Query: 89 SLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCK 146
S K IDL ++ L L S + L+ LDL C T + L+ L L L
Sbjct: 33 STKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 147 SLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNI 206
+ S G ++L+NL L S L I L +
Sbjct: 92 -IQSFSPG---------SFSGLTSLENL-VAVETKLAS-LE---------SFPIGQLITL 130
Query: 207 GELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKL 266
+L + + + + NL +++ I
Sbjct: 131 KKLNVAHN-FIHSCKLPAY---------FSNLTNLVHVDLSYNYI--------------- 165
Query: 267 KKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGL 326
+ L + + SL++ P + + D+ L+ L + G
Sbjct: 166 -QTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFN------- 216
Query: 327 GQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386
+ + K L+N + L + + K ++EI S ++G ++ +
Sbjct: 217 --SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274
Query: 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGI 446
++K + + + ++ SL + I + +++ + L + +
Sbjct: 275 SDDIVKFHCLANVSAM--------SLAGVSI-------KYLEDVPKHFKWQSLSIIRCQL 319
Query: 447 REVP----KSLAQLALSKLKLKKCSSFESLPS--RLYVSKSLTSLEIIDCKNFMRLPDEI 500
++ P L L L+ K +LPS L +S+ +L C ++ L
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR--NALSFSGCCSYSDL---- 373
Query: 501 GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE--SLNQLSSLVSLKLS 558
L+ L + + + L L+ L + L+ + E + L L+ L +S
Sbjct: 374 -GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432
Query: 559 NNNLERIP-ERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLK 617
N + L+SL L + N+ + +++ + T+L +DL
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSF------KDNTLSNVFANTTNLT-FLDLSK--- 482
Query: 618 LDPNELSEIIKD 629
+L +I
Sbjct: 483 ---CQLEQISWG 491
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 57/347 (16%), Positives = 100/347 (28%), Gaps = 84/347 (24%)
Query: 5 NSEIQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHW 64
++ + F + + + SL GV L H
Sbjct: 271 TNDFSDDIVKFHCLANVSAM------------SLAGVSIKYLEDVPKHF----------- 307
Query: 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC--S 122
SL + ++ Q +L LK + L +K ++L +L LDL S
Sbjct: 308 -KWQSLSIIRCQLKQF--PTLDLPFLKSLTLTMNKGSISFKKVAL-PSLSYLDLSRNALS 363
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRG--------CSNLKN 173
S N L LDL + + + L+ L + S +
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 174 LPKMTSCHLRSTLPLLGVGIEELPSSIKC-LSNIGELLIYSCKRLENISSSIFKLQFLES 232
L K+ + T + I L+++ L + +N S++F
Sbjct: 423 LEKLLYLDISYT------NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN----- 471
Query: 233 IRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIID 292
NL FL++ C + E + G +F +L L++++
Sbjct: 472 -----TTNLTFLDLSKCQL---------------------EQISWG--VFDTLHRLQLLN 503
Query: 293 --CPNFERLPDE-LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLE 336
N L L +L+ L I L L
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL--QHFPKSLA 548
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-29
Identities = 91/550 (16%), Positives = 200/550 (36%), Gaps = 76/550 (13%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
NL L + ++ + +D Q+ L + L + L + + +L+ + L+ L
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQTG 116
Query: 123 SLTETH-SSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTS 179
++ + LE L L ++S+ ++ LK L + + L K
Sbjct: 117 -ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDM 173
Query: 180 CHLRS----TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235
L+ +L L G I + + L N + L + ++
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL---------NFGGTQNLLVIFKGLKN 224
Query: 236 HRCPNLQFLEMPSCNIDG-TRSKEQPSSELKLKKCP----RPESLPSGQCMFKSLTSLEI 290
+L + + + + + E+ ++ ++ S F + L+
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN--TFHCFSGLQE 282
Query: 291 IDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYIS 347
+D LP L L L +L++ L + L+ L +K ++ +
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 348 SSIFK-LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL 406
+ + L+++ +++S+ +++ CN+ + + L L+ + SL +
Sbjct: 343 TGCLENLENLRELDLSHD-DIET---SDCCNLQLRNLSHL--QSLNLSYN-EPLSLKTEA 395
Query: 407 CMFKSLTSLEIIDCK--KLERLPDE--LGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462
FK LE++D +L+ + NL L+ L + + + + L
Sbjct: 396 --FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--------- 444
Query: 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCK---NFMRLPDEIGNLEYLKVLTIKGTAIREV 519
F+ LP+ L L + ++ + + L L++L + + +
Sbjct: 445 ------FDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 520 P-ESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLK 576
+ L + + LS N L E+L+ L + L L++N++ I L LS +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550
Query: 577 YLDLFENNLD 586
++L +N LD
Sbjct: 551 TINLRQNPLD 560
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 8e-25
Identities = 89/506 (17%), Positives = 156/506 (30%), Gaps = 99/506 (19%)
Query: 101 LTKLPDLSLAQNLEILDLGYCSSLTETHS-SIQYLNKLEVLDLDRCKSLTSLPTSIHSKY 159
L ++P +L + E L+ + L + + L L LDL RC+ + +
Sbjct: 24 LNEIPG-TLPNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIH------- 73
Query: 160 LKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN 219
+ L L +T+ L + +++ + L + +
Sbjct: 74 --EDTFQSQHRLDTL-VLTANPLIF-MA---------ETALSGPKALKHLFFIQT-GISS 119
Query: 220 ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279
I H L+ L + N
Sbjct: 120 IDFIPL----------HNQKTLESLYL-GSN----------------------------- 139
Query: 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELK 338
++S++ + + L L AI L + + L + L L
Sbjct: 140 ----HISSIK----------LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185
Query: 339 -NCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCS 397
N +++ I F +S+ NL + F + S I+ + +
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLWLGTFEDMDDE 241
Query: 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL- 456
+ S+ S+ + + L+EL + T + E+P L L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301
Query: 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID----CKNFMRLPDEIGNLEYLKVLTIK 512
L KL L FE+L + + SL + K + NLE L+ L +
Sbjct: 302 TLKKLVLSAN-KFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358
Query: 513 GTAIREVP---ESLGQLSSLEWLVLSDNNL-QIIPESLNQLSSLVSLKLSNNNLERIPER 568
I L LS L+ L LS N + E+ + L L L+ L+ +
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
Query: 569 --LDPLSSLKYLDLFENNLDRIPEYL 592
L LK L+L + LD E L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQL 444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 34/314 (10%)
Query: 295 NFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK- 352
+P L N L + + +L L+ L+L C ++ +I F+
Sbjct: 23 GLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQS 79
Query: 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS--VLKLNKCSKLESLPSSLCMFK 410
++++ ++ L E P + L + + S+
Sbjct: 80 QHRLDTLVLTANP-LIFMAETALSG---------PKALKHLFFIQT-GISSIDFI--PLH 126
Query: 411 SLTSLEIIDCK--KLERLPD-ELGNLEALEELRVEGTGIREVPK----SLAQLALSKLKL 463
+ +LE + + + + E L+ L + I + K SL Q L L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGN--LEYLKVLTIKGTAIREVPE 521
+ + S SL +N + + + N ++ L + T + ++
Sbjct: 187 NGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245
Query: 522 SL---GQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKY 577
++ S+E + L + I + + S L L L+ +L +P L LS+LK
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305
Query: 578 LDLFENNLDRIPEY 591
L L N + + +
Sbjct: 306 LVLSANKFENLCQI 319
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 91/541 (16%), Positives = 184/541 (34%), Gaps = 82/541 (15%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
L L + ++ + D Q+L L + L + + L + + +L+ L +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN 111
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKNLPKMTS 179
+ + I +L L+ L++ + S + L+ L L ++++
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169
Query: 180 CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239
L + + L S + I FK L + +
Sbjct: 170 RVLHQ------------------MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-- 209
Query: 240 NLQFLEMPSCNIDG-TRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDC----- 293
N L + I G + + + E + L +L I +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS--ALEGLCNLTIEEFRLAYL 267
Query: 294 -PNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK 352
+ + D L ++ + I + + + ++ K
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGWQHLELVNCKFGQFPTLK 323
Query: 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSL 412
LKS++ + ++ F E+ ++ L L++ L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSL----------EFLDLSRN-GLSFKGCCSQSDFGT 372
Query: 413 TSLEIIDC--KKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFE 470
TSL+ +D + + LE LE L + + ++++ + S F
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--------------SVFL 418
Query: 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREV--PESLGQLS 527
SL + L L+I + + I L L+VL + G + +E P+ +L
Sbjct: 419 SLRN-------LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 528 SLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNL 585
+L +L LS L+ + + N LSSL L +++N L+ +P+ D L+SL+ + L N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 586 D 586
D
Sbjct: 531 D 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 89/507 (17%), Positives = 172/507 (33%), Gaps = 81/507 (15%)
Query: 146 KSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPS-SIKC 202
+ +P ++ K L L L++L + L L I+ + + +
Sbjct: 17 LNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSS 262
LS++ L++ +++++ F +LQ L N+
Sbjct: 75 LSHLSTLILTGNP-IQSLALGAFS----------GLSSLQKLVAVETNL----------- 112
Query: 263 ELKLKKCPRPESLPSGQCMFKSLTSLEIID----CPNFERLPDELGNLQALNRLIIDGTA 318
SL + L +L+ ++ +LP+ NL L L +
Sbjct: 113 ----------ASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 319 IRELPEG----LGQL-ALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI 373
I+ + L Q+ L L+L + +I FK + + + N + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
Query: 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK------KLERLP 427
+ G + R+ + LE S + L +L I + + L+ +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNE--GNLEKFDKSA--LEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 428 DELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT--SL 485
D L + + I V L+L C + +L K LT S
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335
Query: 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES 545
+ + + + LP +LE+L + + +S +SL++L LS N + + +
Sbjct: 336 KGGNAFSEVDLP----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 546 LNQLSSLVSLKLSNNNLERIPER--LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEF 603
L L L ++NL+++ E L +L YLD+ + R I +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-------TRVAFNGIFNGL 444
Query: 604 TSLRLSVDLRNCLKLDPNELSEIIKDG 630
+SL + LK+ N E
Sbjct: 445 SSLEV-------LKMAGNSFQENFLPD 464
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 98/547 (17%), Positives = 172/547 (31%), Gaps = 99/547 (18%)
Query: 89 SLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCK 146
S K +DL ++ L L S L++LDL C T + Q L+ L L L
Sbjct: 29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 147 SLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNI 206
+ SL G S+L+ L +L S L I L +
Sbjct: 88 -IQSLALG---------AFSGLSSLQKL-VAVETNLAS-LE---------NFPIGHLKTL 126
Query: 207 GELLIYSCK-RLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELK 265
EL + + + L LE + + + + ++ + L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN---KIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG 325
L P + G FK + ++ NF+ L +Q L L
Sbjct: 184 LSLNPM-NFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL------------- 227
Query: 326 LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385
++ L E +N LE S +G + + ++
Sbjct: 228 --EVHRLVLGEFRNEGNLEKFDKSAL----------------EGLCNLTIEEFRLAYLDY 269
Query: 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE--LGNLEALEELRVEG 443
+ +++S ++ +ER+ D + LE + +
Sbjct: 270 YLD------------DIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKF 316
Query: 444 TGIREV-PKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGN 502
+ KSL +L + K S LPS ++ S L C
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC-----SQSDFG 371
Query: 503 LEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES--LNQLSSLVSLKLSNN 560
LK L + + + + L LE L +NL+ + E L +L+ L +S+
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 561 NLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLD 619
+ + LSSL+ L + N+ +F I +E +L L L
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQ------ENFLPDIFTELRNLTF-------LDLS 478
Query: 620 PNELSEI 626
+L ++
Sbjct: 479 QCQLEQL 485
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 32/200 (16%)
Query: 55 PLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ--- 111
+ + +L L + + V + + L L+ +D ++S L ++ + S+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 421
Query: 112 NLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNL 171
NL LD+ + + + L+ LEVL + + NL
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQEN--------FLPDIFTELRNL 472
Query: 172 KNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK-LQFL 230
L ++ C L L P++ LS++ L + S +L+++ IF L L
Sbjct: 473 TFL-DLSQCQLEQ-LS---------PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSL 520
Query: 231 ESIRIHR------CPNLQFL 244
+ I +H CP + +L
Sbjct: 521 QKIWLHTNPWDCSCPRIDYL 540
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-28
Identities = 76/412 (18%), Positives = 123/412 (29%), Gaps = 88/412 (21%)
Query: 226 KLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSL 285
+ ++ +R L + + +LP C+ +
Sbjct: 27 RAAVVQKMRACLNNGNAVLNVGESGL---------------------TTLPD--CLPAHI 63
Query: 286 TSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY 345
T+L I D N LP L+ L + G + LP L LS + L
Sbjct: 64 TTLVIPDN-NLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPL-THLPA 118
Query: 346 ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCS----KLES 401
+ S + KL I G+ + +P L + S +L S
Sbjct: 119 LPSGLCKL-----------------------WIFGNQLTSLPVLPPGLQELSVSDNQLAS 155
Query: 402 LPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461
LP+ L L + + L LP L+ EL V + +P ++L KL
Sbjct: 156 LPALPS---ELCKLWAYNNQ-LTSLPMLPSGLQ---ELSVSDNQLASLPTLPSEL--YKL 206
Query: 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDEIGNLEYLKVLTIKGTAIREV 519
SLP+ + L+ + LP L+ L + G + +
Sbjct: 207 WAYNNR-LTSLPA------LPSGLKELIVSGNRLTSLPVLPSELKEL---MVSGNRLTSL 256
Query: 520 PESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLD 579
P L L + N L +PESL LSS ++ L N L + +
Sbjct: 257 PMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL--REITSAP 311
Query: 580 LFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGW 631
+ + F + S R + E D W
Sbjct: 312 GYSGP-------IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 1e-14
Identities = 62/367 (16%), Positives = 110/367 (29%), Gaps = 57/367 (15%)
Query: 133 YLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVG 192
N VL++ LT+LP + + + LV+ NL +LP + LR+ L + G
Sbjct: 38 LNNGNAVLNVGESG-LTTLPDCLPAH-ITTLVIPDN-NLTSLPALPP-ELRT-LEVSGNQ 92
Query: 193 IEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP----NLQFLEMPS 248
+ LP L + + L + S + KL + ++ P LQ L +
Sbjct: 93 LTSLPVLPPGLLEL-SIFSNPLTHLPALPSGLCKLW-IFGNQLTSLPVLPPGLQELSVSD 150
Query: 249 CNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQA 308
+ SLP+ L L + LP LQ
Sbjct: 151 NQL---------------------ASLPAL---PSELCKLWAYNN-QLTSLPMLPSGLQE 185
Query: 309 LNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLK 368
L+ + + LP +L L + L + + LK + +S L
Sbjct: 186 LS---VSDNQLASLPTLPSELYKLWAYNNR----LTSLPALPSGLKE---LIVSGN-RLT 234
Query: 369 GFPEIPFC----NIDGSGIERIPSSVLKLNKCS----KLESLPSSLCMFKSLTSLEIIDC 420
P +P + G+ + +P L S +L LP SL S T++ +
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294
Query: 421 KKLERLPDEL-GNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479
L + + + S + + + +
Sbjct: 295 -PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353
Query: 480 KSLTSLE 486
Sbjct: 354 DRWHMFG 360
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 67/415 (16%), Positives = 119/415 (28%), Gaps = 87/415 (20%)
Query: 56 LKTLNILHWE---------NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPD 106
+ TL I L +L++ G+++T L L+ L + L LP
Sbjct: 63 ITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPS 121
Query: 107 LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLR 166
L L + LT L+ L + + L SLP L +L
Sbjct: 122 -----GLCKLWIFGN-QLTSLPVLP---PGLQELSVSDNQ-LASLPALPSE--LCKLWAY 169
Query: 167 GCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226
L +LP + S L+ L + + LP+ L L RL ++ +
Sbjct: 170 NN-QLTSLPMLPS-GLQE-LSVSDNQLASLPTLPSELYK----LWAYNNRLTSLPALP-- 220
Query: 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
L+ L + + SLP +
Sbjct: 221 ------------SGLKELIVSGNRL---------------------TSLPV------LPS 241
Query: 287 SLEIIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELE 344
L+ + LP L +L+ + + LPE L L+ + + L+ E
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298
Query: 345 YISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPS 404
++ ++ S S I ++ G+ R ++ + +
Sbjct: 299 RTLQALREITSAP-----GYSG-----PIIRFDMAGASAPRETRALHLAAADWLVPAREG 348
Query: 405 SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALS 459
+ L L E + ++ LAQLA
Sbjct: 349 EPAPADRWHMFG--QEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAED 401
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-27
Identities = 94/536 (17%), Positives = 185/536 (34%), Gaps = 80/536 (14%)
Query: 85 QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLTETHSSIQYLNKLEVLDL 142
Q+L L + L + + L + + +L+ L + + + I +L L+ L++
Sbjct: 73 QSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 143 DRCKSLTSLPTSI---HSKYLKRLVLRGC-------SNLKNLPKMTSCHLRSTLPLLGVG 192
+ S + L+ L L ++L+ L +M +L +L L
Sbjct: 132 AHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--SLDLSLNP 188
Query: 193 IEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNID 252
+ + + +L + + N+ + L+ +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI----------QGLAGLEVHRLVLGEFR 238
Query: 253 GTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRL 312
+ E+ E L + L L+ + + D L ++
Sbjct: 239 NEGNLEKFDKSA-------LEGLCNLTIEEFRLAYLDYY----LDDIIDLFNCLTNVSSF 287
Query: 313 IIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPE 372
+ I + + LEL NC + K S++ + ++ F E
Sbjct: 288 SLVSVTIERVKD-FSYNFGWQHLELVNCK-FGQFPTLKLK--SLKRLTFTSNKGGNAFSE 343
Query: 373 IPFCNIDGSGIERIPSSVLKL--NKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDEL 430
+ ++ L L N S S SL L++ + +
Sbjct: 344 VDLPSL----------EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 392
Query: 431 GNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490
LE LE L + + ++++ + S F SL + L L+I
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEF--------------SVFLSLRN-------LIYLDISHT 431
Query: 491 KNFMRLPDEIGNLEYLKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQ-IIPESLN 547
+ L L+VL + G + +E +P+ +L +L +L LS L+ + P + N
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 548 QLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNL-DRIPEYLRSFPTSIPS 601
LSSL L +S+NN + L+SL+ LD N++ + L+ FP+S+
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 88/540 (16%), Positives = 166/540 (30%), Gaps = 130/540 (24%)
Query: 101 LTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYL 160
K+PD +L + + LDL + S +L+VLDL RC+ T +
Sbjct: 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---- 73
Query: 161 KRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENI 220
+L +++ L
Sbjct: 74 ------------SLSHLSTLILTGN----------------------------------- 86
Query: 221 SSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC 280
+Q L +LQ L N+ + +
Sbjct: 87 -----PIQSLALGAFSGLSSLQKLVAVETNL----ASLENFP------------------ 119
Query: 281 MFKSLTSLEIID----CPNFERLPDELGNLQALNRLIIDGTAIREL-PEGLGQLALLSKL 335
L +L+ ++ +LP+ NL L L + I+ + L L + L
Sbjct: 120 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 336 ELK-NCSE--LEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLK 392
L + S + +I FK + + + N + + + G + R+ + +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL--VLGE 236
Query: 393 LNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS 452
LE S + L +L I + L L+ + + +
Sbjct: 237 FRNEGNLEKFDKSA--LEGLCNLTIEEF-----------RLAYLDYYLDDIIDLFNCLTN 283
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIK 512
++ +L + +++ F LE+++CK ++ +L+ L + K
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFG-------WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 513 GTAIREVPESLGQLSSLEWLVLSDNNLQ---IIPESLNQLSSLVSLKLSNNNLERIPERL 569
G S L SLE+L LS N L +S +SL L LS N + +
Sbjct: 337 GGN----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 570 DPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKD 629
L L++LD +NL ++ S+ +L +D+ +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMS------EFSVFLSLRNLI-YLDISH------THTRVAFNG 439
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 9e-26
Identities = 85/515 (16%), Positives = 168/515 (32%), Gaps = 100/515 (19%)
Query: 101 LTKLPDLSLAQNLEILDLGYCSSLTE-THSSIQYLNKLEVLDLDRCKSLTSLPTSI--HS 157
T +P L ++ LDL + +T H ++ L+VL L + + ++
Sbjct: 17 FTSIPS-GLTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSL 73
Query: 158 KYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL 217
L+ L L +L +L S LS++ L +
Sbjct: 74 GSLEHLDLSDN-HLSSLS---------------------SSWFGPLSSLKYLNLMGNPYQ 111
Query: 218 ENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPS 277
+S+F NLQ L + + +
Sbjct: 112 TLGVTSLF----------PNLTNLQTLRIGNVETF--------------------SEIRR 141
Query: 278 GQCMFKSLTSLEIIDCPN--FERLPDE-LGNLQALNRLIIDGTAIRELPEGLGQ-LALLS 333
F LTSL ++ + L +++ ++ L + + L E L+ +
Sbjct: 142 I--DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 334 KLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKL 393
LEL++ + L S + V S + F + + S ++
Sbjct: 200 YLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 394 NKCSKLESLPSSLCMFKSLTSLEIIDCKKLERL-----------PDELGNLEALEELRVE 442
+ C+ + ++ L ++ + RL LE ++ + VE
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318
Query: 443 GTGIREVPKSLAQLALSKLKLKKCSSFESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDE 499
+ + VP CS + L S L +S+ + + + P
Sbjct: 319 NSKVFLVP---------------CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-- 361
Query: 500 IGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559
+L+ L + ++++ E L L +L L +S N +P+S + L LS+
Sbjct: 362 --SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419
Query: 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRS 594
+ + + +L+ LD+ NNLD +L
Sbjct: 420 TGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPR 452
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 89/525 (16%), Positives = 175/525 (33%), Gaps = 72/525 (13%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
NL L + S++ + D +L SL+ +DL + L + L +L+ L+L
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNP 109
Query: 123 -SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTS 179
S L L+ L + ++ + + L L ++ +L+N +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSL 168
Query: 180 CHLRS--TLPLLGVGIEELPSSI-KCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236
+R L L L LS++ L + S + + ++
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNF 296
+ + SE++ C L +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-----------LNGLGDFNPSESDVV 277
Query: 297 ERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK-LK 354
L ++ + + RL I + L + ++ ++N + + S + LK
Sbjct: 278 SELG-KVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLK 334
Query: 355 SVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLT 413
S+E +++S E N S + S+ L + L S+ + + +L
Sbjct: 335 SLEFLDLSENL----MVEEYLKN---SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 414 SLEIIDCK--KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFES 471
+L +D +PD E + L + TGIR V +
Sbjct: 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI------------------ 429
Query: 472 LPSRLYVSKSLTSLEIIDCKN--FMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSL 529
+LE++D N L L+ L I ++ +P++ L
Sbjct: 430 ----------PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDA-SLFPVL 475
Query: 530 EWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPERLDPLS 573
+ +S N L+ +P+ ++L+SL + L N + R+D LS
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 23/183 (12%)
Query: 5 NSEIQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEW---------HQFP 55
+S + +++ + +K V + L+ E+ ++
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITV--ENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 56 LKTLNILHWENLVSLKMPGSKVTQLWDDV---QNLVSLKRIDLKYSKLLTKLPDLSLAQN 112
+ W +L +L + + + + L +L +D+ + +
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411
Query: 113 LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172
+ L+L + + I LEVLD+ L S + L+ L + LK
Sbjct: 412 MRFLNLSST-GIRVVKTCI--PQTLEVLDVSNNN-LDSFSLFLPR--LQELYISRN-KLK 464
Query: 173 NLP 175
LP
Sbjct: 465 TLP 467
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 61/320 (19%), Positives = 119/320 (37%), Gaps = 45/320 (14%)
Query: 300 PDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESI 359
L+++ +L++ G + + G+ L L L L ++ IS + L + ++
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNL 93
Query: 360 EISNC-----SNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL----------PS 404
I S L+ + ++ I I L +K+ SL S
Sbjct: 94 YIGTNKITDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS 149
Query: 405 SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP-----KSLAQLALS 459
L L L + + K ++ + + NL L L + I ++ SL
Sbjct: 150 PLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207
Query: 460 KLKLKKCSSFESLPS--RLYVS----------KSLTSLEIIDC-KNFMRLPDEIGNLEYL 506
++ + ++ L + +L+ L ++ N + + + +L L
Sbjct: 208 VNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKL 267
Query: 507 KVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLERI 565
K+L + I ++ L LS L L L++N L E + L++L +L LS N++ I
Sbjct: 268 KMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 566 PERLDPLSSLKYLDLFENNL 585
L LS + D +
Sbjct: 327 RP-LASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-19
Identities = 59/315 (18%), Positives = 114/315 (36%), Gaps = 65/315 (20%)
Query: 285 LTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELE 344
+L + P + PD +L R ++ ++ ++ +L ++KL +
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE---- 54
Query: 345 YISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL-- 402
K+ S++ I +NL+ N++G+ I I L+ KL +L
Sbjct: 55 -------KVASIQ--GIEYLTNLEYL------NLNGNQITDISP----LSNLVKLTNLYI 95
Query: 403 -------PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQ 455
S+L +L L + + + + L NL + L + L+
Sbjct: 96 GTNKITDISALQNLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDLSPLSN 153
Query: 456 LALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTA 515
+ L L + + K ++ I NL L L++
Sbjct: 154 M-----------------------TGLNYLTVTESK--VKDVTPIANLTDLYSLSLNYNQ 188
Query: 516 IREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSL 575
I ++ L L+SL + N + I + ++ L SLK+ NN + + L LS L
Sbjct: 189 IEDI-SPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQL 245
Query: 576 KYLDLFENNLDRIPE 590
+L++ N + I
Sbjct: 246 TWLEIGTNQISDINA 260
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 9e-19
Identities = 59/316 (18%), Positives = 117/316 (37%), Gaps = 41/316 (12%)
Query: 282 FKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNC 340
+ L S+ + + + L L L ++G I ++ L L L+ L +
Sbjct: 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN 98
Query: 341 SELEYISSSIFKLKSVESIEISNC-----SNLKGFPEIPFCNIDGSGIERIPSSVLKLNK 395
++ IS+ + L ++ + ++ S L ++ N+ + S L+
Sbjct: 99 -KITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP---LSN 153
Query: 396 CSKLESLP------SSLCMFKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTGIR 447
+ L L + +LT L + ++E + L +L +L I
Sbjct: 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQIT 212
Query: 448 EVP-----KSLAQLALSKLKLKKCSSFESLPS--RLYVS----------KSLTSLEIIDC 490
++ L L + K+ S +L L + K LT L++++
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272
Query: 491 -KNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQIIPESLNQ 548
N + + NL L L + + E E +G L++L L LS N++ I L
Sbjct: 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS 331
Query: 549 LSSLVSLKLSNNNLER 564
LS + S +N +++
Sbjct: 332 LSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 6e-16
Identities = 61/414 (14%), Positives = 132/414 (31%), Gaps = 89/414 (21%)
Query: 146 KSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSN 205
+L +LP I+ +L + L+ + ++ + + L +
Sbjct: 3 ATLATLPAPINQ----------IFPDADLAEGIRAVLQKA------SVTDVVT-QEELES 45
Query: 206 IGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELK 265
I +L++ ++ +I I NL++L + I
Sbjct: 46 ITKLVVAGE-KVASIQG------------IEYLTNLEYLNLNGNQI-------------- 78
Query: 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCP-NFERLPDELGNLQALNRLIIDGTAIRELPE 324
+ +L L + N L NL L L ++ I ++
Sbjct: 79 -------TDISP----LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP 127
Query: 325 GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNC-----SNLKGFPEIPFCNID 379
L L + L L L +S + + + + ++ + + ++ +++
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185
Query: 380 GSGIERIPSSVLKLNKCSKLESLP------SSLCMFKSLTSLEIIDCK--KLERLPDELG 431
+ IE I L + L + + ++T L + K+ L L
Sbjct: 186 YNQIEDISP----LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-PLA 240
Query: 432 NLEALEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486
NL L L + I ++ L L + ++ S +L L SL
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNL-------SQLNSLF 293
Query: 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540
+ + + + IG L L L + I ++ L LS ++ ++ ++
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 54/336 (16%), Positives = 117/336 (34%), Gaps = 77/336 (22%)
Query: 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKL--------LTKLPDLSLAQNL--E 114
E++ L + G KV + ++ L +L+ ++L +++ L KL +L + N +
Sbjct: 44 ESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 115 ILDLGYCSSLTE--------TH-SSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLV 164
I L ++L E + S + L K+ L+L S + + + L L
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLT 161
Query: 165 LRGC-----SNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN 219
+ + + NL + S L IE++ S + L+++ Y + + +
Sbjct: 162 VTESKVKDVTPIANLTDLYSLSLNYN------QIEDI-SPLASLTSLHYFTAYVNQ-ITD 213
Query: 220 ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279
I+ + L L++ + I L
Sbjct: 214 ITP------------VANMTRLNSLKIGNNKI---------------------TDLSP-- 238
Query: 280 CMFKSLTSLEIIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLEL 337
+L+ L ++ + + +L L L + I ++ L L+ L+ L L
Sbjct: 239 --LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFL 294
Query: 338 KNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI 373
N I L ++ ++ +S ++ +
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPL 329
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 42/282 (14%), Positives = 91/282 (32%), Gaps = 58/282 (20%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT 125
NL L + ++ + + NL + ++L + L+ L LS L L + +
Sbjct: 111 NLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVK 168
Query: 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC-----SNLKNLPKMTSC 180
+ + I L L L L+ + + + L + + N+ ++ S
Sbjct: 169 DV-TPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226
Query: 181 HLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPN 240
+ + I +L + LS + L I + + + +I++ +
Sbjct: 227 KIGNN------KITDLS-PLANLSQLTWLEIGTNQ-ISDINA------------VKDLTK 266
Query: 241 LQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN---FE 297
L+ L + S I + +L+ L + N
Sbjct: 267 LKMLNVGSNQI---------------------SDISV----LNNLSQLNSLFLNNNQLGN 301
Query: 298 RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
+ +G L L L + I ++ L L+ + + N
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 45/298 (15%), Positives = 97/298 (32%), Gaps = 53/298 (17%)
Query: 299 LPDELGNLQALNRLIIDGTAIRELPEGLGQ-LALLSKLELKNCSELEYISSSIFKLKSVE 357
+ + N + +++++ L Q + +L+L L +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-----------PLSQIS 50
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
+ +++ + L+ +L L+ L +SL++L
Sbjct: 51 AADLAPFTKLE---------------------LLNLSSN-VLYETLD----LESLSTLRT 84
Query: 418 IDCK--KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSR 475
+D ++ L ++E L I V S Q + L L
Sbjct: 85 LDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQG-KKNIYLANNK-ITMLRDL 138
Query: 476 LYVSKSLTSLEIIDCKN----FMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEW 531
+ ++ +D K + + + + L+ L ++ I +V + + L+
Sbjct: 139 DE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKT 195
Query: 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIP 589
L LS N L + + + + L NN L I + L +L++ DL N
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 24/208 (11%)
Query: 398 KLESLPSSLCMFKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTGIREVP--KSL 453
L + ++ T LE+++ L D L +L L L + ++E+ S+
Sbjct: 45 PLSQISAAD--LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSI 101
Query: 454 AQLALSKLKLKK--CSSFESLPSRLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLT 510
L + + + CS + +Y++ +T L + G ++ L
Sbjct: 102 ETLHAANNNISRVSCSRGQGK-KNIYLANNKITMLR----------DLDEGCRSRVQYLD 150
Query: 511 IKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568
+K I V E +LE L L N + + + + L +L LS+N L +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE 209
Query: 569 LDPLSSLKYLDLFENNLDRIPEYLRSFP 596
+ + ++ L N L I + LR
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQ 237
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 37/323 (11%), Positives = 105/323 (32%), Gaps = 30/323 (9%)
Query: 281 MFKSLTSLEIIDCPN--FERLPDELG-NLQALNRLIIDGTAIRELPEG-LGQLALLSKLE 336
+ ++ +I + ++ L + + L + G + ++ L L L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 337 LKNCSELEYISSSIFKLKSVESIEISNC--SNLKGFPEIPFCNIDGSGIERIPSSV---- 390
L + L + L ++ +++++N L P I + + I R+ S
Sbjct: 65 LSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGK 122
Query: 391 --LKLNKCSKLESLPSSLCMFKSLTSLEIIDCK--KLERLP--DELGNLEALEELRVEGT 444
+ L K+ L + ++ +D K +++ + + + + LE L ++
Sbjct: 123 KNIYLANN-KITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 445 GIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDEIGN 502
I +V + L L L + +S + I +N + + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF---QSAAGVTWISLRNNKLVLIEKALRF 235
Query: 503 LEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562
+ L+ ++G + ++ ++ + + ++ +L
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 563 ERIPERLDPLSSLKYLDLFENNL 585
+ + + L ++
Sbjct: 296 CEDL---PAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 36/307 (11%), Positives = 84/307 (27%), Gaps = 68/307 (22%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSL 124
N+ L + G+ ++Q+ L+ ++L + L + DL L LDL +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNN-YV 92
Query: 125 TETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRS 184
E + +E L ++ + S K + L + L
Sbjct: 93 QE----LLVGPSIETLHAANNN-ISRVSCSRGQG-KKNIYLANN-KITMLR--------- 136
Query: 185 TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFL 244
C S + L + ++ ++ + L+ L
Sbjct: 137 ------------DLDEGCRSRVQYLDLKLN-EIDTVNFAEL---------AASSDTLEHL 174
Query: 245 EMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELG 304
+ I + L +L++ + E
Sbjct: 175 NLQYNFI---------------------YDVKGQVVF-AKLKTLDLSSN-KLAFMGPEFQ 211
Query: 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN----CSELEYISSSIFKLKSVESIE 360
+ + + + + + + L L +L+ C L S ++++V
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 361 ISNCSNL 367
+ +
Sbjct: 272 VKKLTGQ 278
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 41/365 (11%), Positives = 99/365 (27%), Gaps = 86/365 (23%)
Query: 128 HSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRS- 184
H Q N+ ++ + L S+ + +K L L G L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60
Query: 185 -TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQF 243
L L + E ++ LS + L + + + + P+++
Sbjct: 61 ELLNLSSNVLYETL-DLESLSTLRTLDLNNNY----VQE------------LLVGPSIET 103
Query: 244 LEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD-E 302
L + NI + + ++ + + L D +
Sbjct: 104 LHAANNNI---------------------SRVSCS--RGQGKKNIYLANN-KITMLRDLD 139
Query: 303 LGNLQALNRLIIDGTAIRELPEG--LGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360
G + L + I + L L L+ + + + +++++
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLD 197
Query: 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDC 420
+S+ KL + +T + + +
Sbjct: 198 LSSN---------------------------------KLAFMGPEFQSAAGVTWISLRNN 224
Query: 421 KKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480
KL + L + LE + G G +++ + + L +
Sbjct: 225 -KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 481 SLTSL 485
++ +L
Sbjct: 284 TVPTL 288
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 63/372 (16%), Positives = 124/372 (33%), Gaps = 57/372 (15%)
Query: 284 SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSE 342
+ FE + L + + +R+LP L + L L + +
Sbjct: 27 HIDMQTQDVYFGFEDI-----TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-Q 80
Query: 343 LEYISSSIFK-LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS-SVLKLNKCSKLE 400
+E I + F +++ + + ++ P F N+ P +VL L + L
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV--------PLLTVLVLERN-DLS 130
Query: 401 SLPSSLCMFKSLTSLEIIDCK--KLERLPDE-LGNLEALEELRVEGTGIREVP----KSL 453
SLP + F + L + LER+ D+ +L+ L++ + V SL
Sbjct: 131 SLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
Query: 454 AQLALSKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFMRL---------PDEIGNL 503
+S L + ++ L S S+ + L + N
Sbjct: 189 FHANVSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247
Query: 504 EYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562
L + + + ++ ++ LE L +S+N L + + +L L LS+N+L
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
Query: 563 ERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNE 622
+ L+ L L N++ + S +L+ L L N+
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLK----------LSTHHTLKN-------LTLSHND 350
Query: 623 LSEIIKDGWMKQ 634
+
Sbjct: 351 WDCNSLRALFRN 362
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 49/323 (15%), Positives = 112/323 (34%), Gaps = 52/323 (16%)
Query: 59 LNILHWENLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEI 115
+ N + S + +L + + ++ ++L + + ++ + A ++
Sbjct: 39 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQK 97
Query: 116 LDLGYCSSLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLK 172
L +G+ ++ + Q + L VL L+R L+SLP I ++ L L + NL+
Sbjct: 98 LYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLE 154
Query: 173 NLPKMTSCHLRS--TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFL 230
+ T S L L + + S+ + ++ + S L ++ I ++ L
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANV-SYNLLSTLAIPIA-VEEL 210
Query: 231 -------ESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFK 283
+R L L++ N+
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNL---------------------TDTAW----LL 245
Query: 284 SLTSLEIIDCPN--FERLPDE-LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNC 340
+ L +D E++ +Q L RL I + L + L L+L +
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305
Query: 341 SELEYISSSIFKLKSVESIEISN 363
L ++ + + +E++ + +
Sbjct: 306 -HLLHVERNQPQFDRLENLYLDH 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 40/256 (15%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEW--------HQFPLKTLN 60
+I+ Y F+ ++ L N + L F + P +
Sbjct: 83 EIDTYAFAYAHTIQKLYM--GFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138
Query: 61 ILHWENLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKL-------LTKLPDLSLAQN 112
L +L M + + ++ DD Q SL+ + L ++L + L +++ N
Sbjct: 139 NTP--KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 113 ----------LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKR 162
+E LD + S + + +L +L L LT ++ L
Sbjct: 197 LLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNN-LTDTAWLLNYPGLVE 252
Query: 163 LVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENI 220
+ L L+ + ++ L + + L + + + L + L ++
Sbjct: 253 VDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHV 310
Query: 221 SSSIFKLQFLESIRIH 236
+ + LE++ +
Sbjct: 311 ERNQPQFDRLENLYLD 326
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-23
Identities = 103/556 (18%), Positives = 200/556 (35%), Gaps = 73/556 (13%)
Query: 85 QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGY-CSSLTETHSSIQYLNKLEVLD 141
Q L + +R+ L ++ + + S + L++L+LG + LT + + L L +LD
Sbjct: 21 QVLNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 142 LDRCKSLTSLPTSI--HSKYLKRLVLRGCS-NLKNLPKMTSCHLRS--TLPLLGVGIEEL 196
L K + L +L L L C + L +L++ L L I L
Sbjct: 80 LGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 197 P--SSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGT 254
S L+++ + S + + + + L+ L F + + ++
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQ-IFLVCEHEL--EPLQG------KTLSFFSLAANSL--- 186
Query: 255 RSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNF--ERLPDELGNLQALNRL 312
K R L T + N + L +
Sbjct: 187 -YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 313 IIDGTAIRELP----EGLGQLALLSKLELKNCSELEYISSSIFK-LKSVESIEISNCSNL 367
I++ GL + ++ L+L + + ++S +F+ LK ++ + ++ +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRH-LDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KI 302
Query: 368 KGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK--KLER 425
+ F + ++ VL L+ L L SS F L + ID + +
Sbjct: 303 NKIADEAFYGL--DNLQ-----VLNLSYN-LLGELYSS--NFYGLPKVAYIDLQKNHIAI 352
Query: 426 LPDE-LGNLEALEELRVEGTGIREVP--KSLAQLALSKLKLKKCSSFESLPSRLYVSKSL 482
+ D+ LE L+ L + + + S+ + LS KL + +++S+
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE-- 410
Query: 483 TSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES--LGQLSSLEWLVLSDNNLQ 540
LE +D F+ + +L++L + + SLE L L +N LQ
Sbjct: 411 NRLENLDILYFLL------RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Query: 541 ------IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLR 593
+ + LS L L L++N L +P L++L+ L L N L +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-- 522
Query: 594 SFPTSIPSEFTSLRLS 609
P ++ L +S
Sbjct: 523 DLPANL----EILDIS 534
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 8e-21
Identities = 101/616 (16%), Positives = 204/616 (33%), Gaps = 131/616 (21%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWENLV 68
+ +F + +L+LL+ ++ +++ F L NL
Sbjct: 38 TVTASSFPFLEQLQLLEL---GSQYTPLTIDKEAFRNLP------------------NLR 76
Query: 69 SLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKL-LTKLPDLSLA--QNLEILDLGYCSSL 124
L + SK+ L D Q L L + L + L L D + L LDL
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136
Query: 125 T-ETHSSIQYLNKLEVLDLDRCKSLTSLP----TSIHSKYLKRLVLRGCSNLKNLPKMTS 179
+ H S LN L+ +D + + + + K L L +L + +
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDW 194
Query: 180 CHLR--------STLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLE 231
L + G G + + I + +S +I + F ++
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 232 SIRIH-----RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
+ +++ L++ + SL S +F++L
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFV---------------------FSLNSR--VFETLK 290
Query: 287 SLEIIDCPN--FERLPDE-LGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSE 342
L++++ ++ DE L L L + + EL L ++ ++L+
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH- 349
Query: 343 LEYISSSIFK-LKSVESIEISNC--SNLKGFPEIPFCNIDGSGIERIPSSVLKLNK---- 395
+ I FK L+ ++++++ + + + P IP + G+ + +P L N
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
Query: 396 CSKLESLPSSLCMFKSLTSLEIIDCK--KLERLPDE--LGNLEALEELRVEGTGIREVPK 451
++LE+L L + L+I+ + + +LE+L + ++ +
Sbjct: 410 ENRLENLD-ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 452 SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTI 511
+ L D L +L+VL +
Sbjct: 469 T------------------ELC-----------------------WDVFEGLSHLQVLYL 487
Query: 512 KGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLD 570
+ +P L++L L L+ N L ++ + ++L L +S N L D
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNP--D 544
Query: 571 PLSSLKYLDLFENNLD 586
SL LD+ N
Sbjct: 545 VFVSLSVLDITHNKFI 560
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-10
Identities = 46/286 (16%), Positives = 87/286 (30%), Gaps = 54/286 (18%)
Query: 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEII 418
I+ ++P ++ ++ +L + + ++ +S F L L+++
Sbjct: 7 RIAFYRFC-NLTQVP----------QVLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLL 53
Query: 419 D----CKKLERLPDELGNLEALEELRVEGTGIREVP-------KSLAQLALSKLKLKKCS 467
+ L + NL L L + + I + L +L L L
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 468 SFESLPSRLYVSKSLTSLEIIDCK-NFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQ 525
+ L K+LT L++ + + L G L LK + I V L
Sbjct: 114 LKDGYFRNL---KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Query: 526 LS--SLEWLVLSDNNLQIIPE-------SLNQLSSLVSLKLSNNNLERIPE--------- 567
L +L + L+ N+L + + L L +S N
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230
Query: 568 ----RLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLS 609
L + +N+ + +F S L LS
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQ--NTFAGLARSSVRHLDLS 274
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 5e-22
Identities = 60/346 (17%), Positives = 119/346 (34%), Gaps = 35/346 (10%)
Query: 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG 325
+ P + + S + I E L + + +R+LP
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 326 -LGQLALLSKLELKNCSELEYISSSIF-KLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383
L + L L + ++E I + F +++ + + ++ P F N+
Sbjct: 70 LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV----- 122
Query: 384 ERIPS-SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK--KLERLPDE-LGNLEALEEL 439
P +VL L + L SLP + F + L + LER+ D+ +L+ L
Sbjct: 123 ---PLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 440 RVEGTGIREVP----KSLAQLALSKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFM 494
++ + V SL +S L + ++ L S S+ +
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELT 235
Query: 495 RL---------PDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE 544
L + N L + + + ++ ++ LE L +S+N L +
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
+ +L L LS+N+L + L+ L L N++ +
Sbjct: 296 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 7e-12
Identities = 80/541 (14%), Positives = 166/541 (30%), Gaps = 104/541 (19%)
Query: 59 LNILHWENLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEI 115
+ N + S + +L + + ++ ++L + + ++ + A ++
Sbjct: 45 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQK 103
Query: 116 LDLGYCSSLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLK 172
L +G+ ++ + Q + L VL L+R L+SLP I ++ L L + NL+
Sbjct: 104 LYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLE 160
Query: 173 NLPKMTSCHLRS--TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFL 230
+ T S L L + + S+ + ++ + L ++ I ++ L
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYN-LLSTLAIPIA-VEEL 216
Query: 231 -------ESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFK 283
+R L L++ N+
Sbjct: 217 DASHNSINVVRGPVNVELTILKLQHNNL---------------------TDTAW----LL 251
Query: 284 SLTSLEIIDCPN--FERLPDE-LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNC 340
+ L +D E++ +Q L RL I + L + L L+L +
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311
Query: 341 SELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLE 400
L ++ + + +E++ + + +
Sbjct: 312 -HLLHVERNQPQFDRLENLYLDHN---------------------------------SIV 337
Query: 401 SLPSSLCMFKSLTSLEI----IDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL 456
+L S +L +L + DC L L + + + +
Sbjct: 338 TLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPA-----------VDDADQHCKID 384
Query: 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI 516
+ L S + RL +LTS+ + R + ++ L+ T
Sbjct: 385 YQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS-ATDTINSVQSLSHYITQQ 443
Query: 517 REVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN-NLERIPERLDPLSSL 575
VP + E L Q+ E + Q L L + NL R D L+
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS 503
Query: 576 K 576
Sbjct: 504 S 504
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 56/365 (15%), Positives = 113/365 (30%), Gaps = 24/365 (6%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWENLV 68
+I TF T L+ L+ S N+ + ++ L + L TL I +
Sbjct: 161 RIEDDTFQATTSLQNLQL--SSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIP--IAVE 214
Query: 69 SLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETH 128
L + + + V L + L+++ L T L L +DL Y +
Sbjct: 215 ELDASHNSINVV--RGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMY 271
Query: 129 SSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLVLRGCSNLKNLPKMTSCHLRS--T 185
+ +LE L + + L +L LK L L +L ++ +
Sbjct: 272 HPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLEN 328
Query: 186 LPLLGVGIEELPSSIKCLSNIGELLIY----SCKRLENISSSIFKLQFLESIRIHRCPNL 241
L L I L S + L + C L + ++ + ++ + +
Sbjct: 329 LYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID-Y 385
Query: 242 QFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301
Q C ++ + L E + Q + ++ + +
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSV--VEKVQRAQGRCSATDTINSVQSLSHYITQQ 443
Query: 302 ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361
LQ +L + +R + L + + L+ + ++L
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS 503
Query: 362 SNCSN 366
S+ N
Sbjct: 504 SDNLN 508
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 68/291 (23%)
Query: 322 LPEGLGQLALLSKLELKNCSE--LEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNID 379
L + Q ++ L+L + I SS+ L + + I +NL G
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG---------- 91
Query: 380 GSGIERIPSSVLKLNKCSKLESL-----------PSSLCMFKSLTSLEIIDCKKLE-RLP 427
IP + + K ++L L P L K+L +L+ L LP
Sbjct: 92 -----PIPPA---IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP 142
Query: 428 DELGNLEALEELRVEG---TGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK-SLT 483
+ +L L + +G +G +P S + L + + +S+ LT
Sbjct: 143 PSISSLPNLVGITFDGNRISG--AIPDSYGSFS-------------KLFTSMTISRNRLT 187
Query: 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ-I 541
++P NL L + + + + G + + + L+ N+L
Sbjct: 188 G----------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 542 IPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPE 590
+ + +L L L NN + +P+ L L L L++ NNL IP+
Sbjct: 237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 48/207 (23%), Positives = 70/207 (33%), Gaps = 46/207 (22%)
Query: 426 LPDELGNLEALEELRVEG---TGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSL 482
L D + L + G +P SLA L L
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL-----------------------PYL 78
Query: 483 TSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ 540
L I N + +P I L L L I T + +P+ L Q+ +L L S N L
Sbjct: 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 541 -IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSL-KYLDLFENNLDRIPEYLRSFPT 597
+P S++ L +LV + N + IP+ S L + + N L
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---------- 188
Query: 598 SIPSEFTSLRLSVDLRNCLKLDPNELS 624
IP F +L L+ + L N L
Sbjct: 189 KIPPTFANLNLAF-----VDLSRNMLE 210
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 59/308 (19%), Positives = 107/308 (34%), Gaps = 69/308 (22%)
Query: 299 LPDELGNLQALNRLIIDGTAIR---ELPEGLGQLALLSKLELKNCSELE-YISSSIFKLK 354
L D +N L + G + +P L L L+ L + + L I +I KL
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 355 SVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL-----------P 403
+ + I++ N+ G+ IP L++ L +L P
Sbjct: 102 QLHYLYITHT------------NVSGA----IPDF---LSQIKTLVTLDFSYNALSGTLP 142
Query: 404 SSLCMFKSLTSLEIIDCKKLERLPDELGNLEAL-EELRVEG---TGIREVPKSLAQLALS 459
S+ +L + + +PD G+ L + + TG ++P + A L L+
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLNLA 200
Query: 460 KLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-E 518
+ L + L G+ + + + + ++ +
Sbjct: 201 FVDLSRNM--------------LEG----------DASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 519 VPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLK 576
+ +G +L L L +N + +P+ L QL L SL +S NNL IP+ L
Sbjct: 237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFD 294
Query: 577 YLDLFENN 584
N
Sbjct: 295 VSAYANNK 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 3e-20
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIIDCK 421
C+ +G E+P + IPS+ LN + ++ + + F+ L LE++
Sbjct: 60 VCTR-RGLSEVP---------QGIPSNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLG 107
Query: 422 --KLERLPDE-LGNLEALEELRVEGTGIREVPK-------SLAQLALSKLKLKK--CSSF 469
+ ++ L +L L + + +P L +L L ++ +F
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167
Query: 470 ESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPESLGQLSS 528
+PS L L++ + K + + L LK L + I+++P +L L
Sbjct: 168 NRVPS-------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVG 219
Query: 529 LEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586
LE L +S N+ I S + LSSL L + N+ + I D L+SL L+L NNL
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 587 RIPE 590
+P
Sbjct: 280 SLPH 283
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 60/271 (22%), Positives = 94/271 (34%), Gaps = 68/271 (25%)
Query: 300 PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK-LKSVE 357
D +L L L + +IR++ G LA L+ LEL + L I S F+ L +
Sbjct: 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLR 150
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
+ + N IE IPS +PS L L++
Sbjct: 151 ELWLRNNP-----------------IESIPSYAF--------NRVPS-------LMRLDL 178
Query: 418 IDCKKLERLPDE-LGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPS-- 474
+ KKLE + + L L+ L + I+++P + L
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------------NLTPLVGLE 221
Query: 475 RLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWL 532
L +S + P L LK L + + + + + L+SL L
Sbjct: 222 ELEMSGNHFPEIR----------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 533 VLSDNNLQIIPES-LNQLSSLVSLKLSNNNL 562
L+ NNL +P L LV L L +N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 37/123 (30%)
Query: 527 SSLEWLVLSDNNLQIIPESL-----------NQ-----------LSSLVSLKLSNNNLER 564
+ +V + L +P+ + N L L L+L N++ +
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 565 IPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNEL 623
I + L+SL L+LF+N L IP F L LR L L N +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIP----------SGAFEYLS---KLRE-LWLRNNPI 159
Query: 624 SEI 626
I
Sbjct: 160 ESI 162
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
+L L++ + + Q+ L SL ++L + LT +P + L L L
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLRNNP 158
Query: 123 SLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTS 179
+ S + L LDL K L + LK L L C N+K++P +T
Sbjct: 159 -IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTP 216
Query: 180 CHLRSTLPLLGVGIEELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238
L + G E+ S LS++ +L + + ++ I + F
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAF----------DGL 265
Query: 239 PNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIID 292
+L L + N+ SLP +F L L +
Sbjct: 266 ASLVELNLAHNNL---------------------SSLPHD--LFTPLRYLVELH 296
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 5e-20
Identities = 47/298 (15%), Positives = 97/298 (32%), Gaps = 51/298 (17%)
Query: 299 LPDELGNLQALNRLIIDGTAIRELPEGLGQ-LALLSKLELKNCSELEYISSSIFKLKSVE 357
+ + N + +++++ L Q + +L+L L +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-----------PLSQIS 50
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
+ +++ + L+ +L L+ L +SL++L
Sbjct: 51 AADLAPFTKLE---------------------LLNLSSN-VLYETLD----LESLSTLRT 84
Query: 418 IDCKKLER-LPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRL 476
+D L EL ++E L I V S Q + L L
Sbjct: 85 LD---LNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-KKNIYLANNK-ITMLRDLD 139
Query: 477 YVSKSLTSLEIIDCKN----FMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWL 532
+ ++ +D K + + + + L+ L ++ I +V + + L+ L
Sbjct: 140 E--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTL 196
Query: 533 VLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
LS N L + + + + L NN L I + L +L++ DL N
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-18
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 24/208 (11%)
Query: 398 KLESLPSSLCMFKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTGIREVP--KSL 453
L + ++ T LE+++ L D L +L L L + ++E+ S+
Sbjct: 45 PLSQISAAD--LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSI 101
Query: 454 AQLALSKLKLKK--CSSFESLPSRLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLT 510
L + + + CS + +Y++ +T L + G ++ L
Sbjct: 102 ETLHAANNNISRVSCSRGQGK-KNIYLANNKITMLR----------DLDEGCRSRVQYLD 150
Query: 511 IKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568
+K I V E +LE L L N + + + + L +L LS+N L +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE 209
Query: 569 LDPLSSLKYLDLFENNLDRIPEYLRSFP 596
+ + ++ L N L I + LR
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQ 237
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 8e-16
Identities = 42/417 (10%), Positives = 120/417 (28%), Gaps = 61/417 (14%)
Query: 282 FKSLTSLEIIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
T LE+++ + D L +L L L ++ ++EL + L N
Sbjct: 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN 108
Query: 340 CSELEYISSSIF-----------KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388
+ + +S S K+ + ++ S ++ + ++ + I+ +
Sbjct: 109 NN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ------YLDLKLNEIDTVNF 161
Query: 389 S----------VLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEE 438
+ L L + + + L +L++ K L + E + +
Sbjct: 162 AELAASSDTLEHLNLQYN-FIYDVKGQVVF-AKLKTLDLSSNK-LAFMGPEFQSAAGVTW 218
Query: 439 LRVEGTGIREVPKSLAQLA-LSKLKLK----KCSSFESLPSRLYVSKSLTSLEIIDCKNF 493
+ + + + K+L L L+ C + S+ ++ + +
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN------QRVQTVAKQTV 272
Query: 494 MRLPDEIG-NLEYLKVLTIKGTAIREVPESLGQ------LSSLEWLVLSDNNLQIIPESL 546
+L + + ++P L + + +
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332
Query: 547 NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTS 605
+ + + +++ + L+ + LD R +
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392
Query: 606 LRLSVDL-RNCLKLDPNELSEIIKDGWMKQSVNGETYITKSMYFPG---NEIPKWFR 658
++L + P +L I + + V ++ ++ ++ +
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 56/524 (10%), Positives = 139/524 (26%), Gaps = 98/524 (18%)
Query: 131 IQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TL 186
Q N+ ++ + L S+ + +K L L G L + L
Sbjct: 6 KQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63
Query: 187 PLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEM 246
L + E ++ LS + L + + + + P+++ L
Sbjct: 64 NLSSNVLYETL-DLESLSTLRTLDLNNNY----VQE------------LLVGPSIETLHA 106
Query: 247 PSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD-ELGN 305
+ NI + + ++ + + L D + G
Sbjct: 107 ANNNI---------------------SRVSCS--RGQGKKNIYLANN-KITMLRDLDEGC 142
Query: 306 LQALNRLIIDGTAIRELPEG--LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISN 363
+ L + I + L L L+ + + + ++++++S+
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSS 200
Query: 364 CSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKL 423
KL + +T + + + KL
Sbjct: 201 N---------------------------------KLAFMGPEFQSAAGVTWISLRNN-KL 226
Query: 424 ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKS-- 481
+ L + LE + G G +++ + + L + +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 482 -LTSLEIIDCKNF-MRLPDEIGNL--EYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDN 537
L C++ D + L + +L+ +G+ + + +
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346
Query: 538 NLQIIP-ESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFP 596
+ + + + + ++L+ L+ + +L + +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQV----SNGRRAHAELDGTLQQAVGQIELQHA 402
Query: 597 TSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGWMKQSVNGET 640
T S LR V R + + + ET
Sbjct: 403 TEEQSPLQLLRAIVK-RYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 72/513 (14%), Positives = 158/513 (30%), Gaps = 67/513 (13%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCS 122
K+ S + Q + Q+ ++K +DL + L +++ LA LE+L+L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNV 69
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHL 182
L ET ++ L+ L LDL+ + L ++ L N+ +
Sbjct: 70 -LYET-LDLESLSTLRTLDLNNNY-VQELLVGPS---IETLHAANN-NISRVSCSRGQGK 122
Query: 183 RSTLPLLGVGIEELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNL 241
++ + L I L C S + L + ++ ++ + L
Sbjct: 123 KN-IYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAEL---------AASSDTL 171
Query: 242 QFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301
+ L + I + L +L++ +
Sbjct: 172 EHLNLQYNFI---------------------YDVKGQVVF-AKLKTLDLSSN-KLAFMGP 208
Query: 302 ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN----CSELEYISSSIFKLKSVE 357
E + + + + + + + L L +L+ C L S ++++V
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV- 267
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
+K + + + + L + + + +L
Sbjct: 268 -----AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA---LKRKEHALLS 319
Query: 418 IDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLK----KCSSFESLP 473
+ ERL E N E+ R V + +K+ L+ S
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
Query: 474 SRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLV 533
R + T + + +E L+ L+ + +K V + Q +++
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI-VKRYEEMYVEQQSVQNNAIRDWD 438
Query: 534 LSDNNLQIIPES---LNQLSSLVSLKLSNNNLE 563
+ + + E L +L+ L L++ N
Sbjct: 439 MYQHKETQLAEENARLKKLNGEADLALASANAT 471
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 66/447 (14%), Positives = 126/447 (28%), Gaps = 52/447 (11%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVP----FTELRYFEWHQFPLKTLNILHW 64
QI+ + T+L LL S N L + LR + + ++ L +
Sbjct: 48 QISAADLAPFTKLELLNL--SSNV-----LYETLDLESLSTLRTLDLNNNYVQELLVGP- 99
Query: 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCS 122
++ +L + ++++ K I L +K +T L DL ++ LDL
Sbjct: 100 -SIETLHAANNNISRV--SCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 123 -SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC------SNLKNLP 175
+ LE L+L + + + LK L L ++
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 176 KMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCK-RLENISSSIFKLQFLESIR 234
+T LR+ + + +++ N+ + + K Q ++++
Sbjct: 215 GVTWISLRNNK------LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
Query: 235 IHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCP 294
L C + + P P + + +L
Sbjct: 269 KQTVKKLTGQNEEECTVP----TLGHYGAYCCEDLPAP-FADRLIALKRKEHALLSGQGS 323
Query: 295 NFERLPDELGNLQALNRLIIDGTAIRELPEGLGQ-LALLSKLELKNCSELEYISSSIFKL 353
ERL E N + R + + + LE K L
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK-----------AL 372
Query: 354 KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLT 413
S + L G + I+ S + L K
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432
Query: 414 SLEIIDCK--KLERLPDELGNLEALEE 438
++ D K +L +E L+ L
Sbjct: 433 AIRDWDMYQHKETQLAEENARLKKLNG 459
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 6e-20
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 32/242 (13%)
Query: 370 FPEIPFCNIDGSGIERIPSSV------LKLNKCSKLESLPSSLCMFKSLTSLEIIDCK-- 421
+ + +P + L L++ +++ + + FK L LEI+
Sbjct: 42 SNQFSKVICVRKNLREVPDGISTNTRLLNLHEN-QIQIIKVN--SFKHLRHLEILQLSRN 98
Query: 422 KLERLPDE-LGNLEALEELRVEGTGIREVP-------KSLAQLALSKLKLKK--CSSFES 471
+ + L L L + + +P L +L L ++ +F
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 472 LPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPESLGQLSSLE 530
+PS L L++ + K + + L L+ L + +RE+P +L L L+
Sbjct: 159 IPS-------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210
Query: 531 WLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRI 588
L LS N+L I S L L L + + ++ I D L SL ++L NNL +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 589 PE 590
P
Sbjct: 271 PH 272
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 7e-17
Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 390 VLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK--KLERLPDE-LGNLEALEELRVEGTGI 446
+L+L++ + ++ F L +L ++ +L +P+ L L+EL + I
Sbjct: 92 ILQLSRN-HIRTIEIGA--FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 447 REVPKSL-AQL-ALSKLKLKKCSSFESLPSRLYVS-KSLTSLEIIDCKNFMRLPDEIGNL 503
+P ++ +L +L L + + + +L L + C N +P+ + L
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPL 206
Query: 504 EYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNN 561
L L + G + + S L L+ L + + +Q+I + + L SLV + L++NN
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
Query: 562 LERIPER-LDPLSSLKYLDLFENNLD 586
L +P PL L+ + L N +
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 47/263 (17%)
Query: 98 SKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-- 155
K L ++PD ++ N +L+L +S ++L LE+L L R + ++
Sbjct: 52 RKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFN 109
Query: 156 HSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPSSI-KCLSNIGELLIY 212
L L L L +P +L L L IE +PS + ++ L +
Sbjct: 110 GLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Query: 213 SCKRLENISSSIFK-LQFLESIRIHRC-----------PNLQFLEMPSCNIDGTRSKEQP 260
KRL IS F+ L L + + C L L++ ++
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL--------- 219
Query: 261 SSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FERLPDE-LGNLQALNRLIIDGT 317
++ G F+ L L+ + + + NLQ+L + +
Sbjct: 220 ------------SAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 318 AIRELPEG-LGQLALLSKLELKN 339
+ LP L L ++ L +
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 44/234 (18%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
+L L++ + + + L +L ++L ++L T +P+ + L+ L L
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNP 147
Query: 123 SLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTS 179
+ S + L LDL K L+ + L+ L L C NL+ +P +T
Sbjct: 148 -IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTP 205
Query: 180 CHLRSTLPLLGVGIEELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238
L L G + + S + L ++ +L + +++ I + F
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF----------DNL 254
Query: 239 PNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIID 292
+L + + N+ LP +F L LE I
Sbjct: 255 QSLVEINLAHNNL---------------------TLLPHD--LFTPLHHLERIH 285
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 6e-20
Identities = 45/312 (14%), Positives = 100/312 (32%), Gaps = 41/312 (13%)
Query: 321 ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380
+ + + + + + + ++++ NL P+
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL-NLSSLPD-------- 76
Query: 381 SGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEEL 439
+P + L + L SLP SL L+ D + L LP+ +L+ L
Sbjct: 77 ----NLPPQITVLEITQNALISLPELPA---SLEYLDACDNR-LSTLPELPASLK---HL 125
Query: 440 RVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLP 497
V+ + +P+ A L + LP TSLE++ +N LP
Sbjct: 126 DVDNNQLTMLPELPALL--EYINADNNQ-LTMLPE------LPTSLEVLSVRNNQLTFLP 176
Query: 498 DEIGNLEYLKVLTIKGTAIREVPESLGQLSSLE----WLVLSDNNLQIIPESLNQLSSLV 553
+ +LE L V + +P + E + +N + IPE++ L
Sbjct: 177 ELPESLEALDV---STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 554 SLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLR 613
++ L +N L + + + + ++ ++ + + +
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293
Query: 614 NCLKLDPNELSE 625
+ + +
Sbjct: 294 SDVSQIWHAFEH 305
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 1e-19
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 27/217 (12%)
Query: 422 KLERLPDELGN-LEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSS--FESLPSRLYV 478
+ + + + E+ + G E L + +++ + + SLP L
Sbjct: 21 TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL-- 78
Query: 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNN 538
+T LEI + LP+ +LEYL + +PE L L+ + +N
Sbjct: 79 PPQITVLEITQNA-LISLPELPASLEYLDAC---DNRLSTLPELPASLKHLD---VDNNQ 131
Query: 539 LQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRS---- 594
L ++PE L + NN L +PE +SL+ L + N L +PE S
Sbjct: 132 LTMLPELPALLEYI---NADNNQLTMLPELP---TSLEVLSVRNNQLTFLPELPESLEAL 185
Query: 595 -----FPTSIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
S+P+ S + + N ++ I
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 2e-17
Identities = 49/307 (15%), Positives = 93/307 (30%), Gaps = 43/307 (14%)
Query: 298 RLPDELGN-LQALNRLIIDGTAIRELPEGLGQLAL--LSKLELKNCSELEYISSSIFKLK 354
+ + + + G E L + + S+L+L + L + ++
Sbjct: 24 GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLPP-- 80
Query: 355 SVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCS-KLESLPSSLCMFKSLT 413
+ +EI+ L PE+P +S+ L+ C +L +LP SL
Sbjct: 81 QITVLEITQN-ALISLPELP-------------ASLEYLDACDNRLSTLPELPA---SLK 123
Query: 414 SLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLP 473
L++ + + L LP+ LE + + + +P+ L L ++ LP
Sbjct: 124 HLDVDNNQ-LTMLPELPALLE---YINADNNQLTMLPELPTSL--EVLSVRNNQ-LTFLP 176
Query: 474 SRLYVSKSLTSLEIIDCKN--FMRLPDEIGNL----EYLKVLTIKGTAIREVPESLGQLS 527
SLE +D LP E + I +PE++ L
Sbjct: 177 E------LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230
Query: 528 SLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR 587
++L DN L + + + D
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290
Query: 588 IPEYLRS 594
+ S
Sbjct: 291 NKQSDVS 297
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 44/269 (16%), Positives = 80/269 (29%), Gaps = 37/269 (13%)
Query: 79 QLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLE 138
+ ++ ++ L + + L L + L+ ++ ++
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLN-LSSLPDNL--PPQIT 83
Query: 139 VLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPS 198
VL++ + L SLP S L+ L L LP+ L+ L + + LP
Sbjct: 84 VLEITQNA-LISLPELPAS--LEYLDACDN-RLSTLPE-LPASLKH-LDVDNNQLTMLPE 137
Query: 199 SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE 258
L E + +L + L+ L N Q +P E
Sbjct: 138 LPALL----EYINADNNQLTMLPELPTSLEVL------SVRNNQLTFLP----------E 177
Query: 259 QPSS--ELKLKKCPRPESLPSGQCMFKSLTSLEII-DCPN--FERLPDELGNLQALNRLI 313
P S L + ESLP+ EI C +P+ + +L +I
Sbjct: 178 LPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236
Query: 314 IDGTAIRELPEG-LGQLALLSKLELKNCS 341
++ + L Q
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 3e-19
Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 54/293 (18%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIID-- 419
CS+L G ++P + +P L+ + +K+ + FK+L +L +
Sbjct: 37 QCSDL-GLEKVP---------KDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILI 84
Query: 420 CKKLERLPDE-LGNLEALEELRVEGTGIREVP----KSLAQLALSKLKLKK--CSSFESL 472
K+ ++ L LE L + ++E+P K+L +L + + ++ K S F L
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144
Query: 473 PS--RLYVS--------------KSLTSLEIIDCK--NFMRLPDEIGNLEYLKVLTIKGT 514
+ + + + L I N +P G L L + G
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGN 202
Query: 515 AIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPERLDPL 572
I +V SL L++L L LS N++ + SL L L L+NN L ++P L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262
Query: 573 SSLKYLDLFENNLDRIPEYLRSF-PTSIPSEFTSLRLSVDLRNCLKLDPNELS 624
++ + L NN+ I F P ++ S + L N +
Sbjct: 263 KYIQVVYLHNNNISAIGS--NDFCPPGYNTKKASYSG-------VSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 63/334 (18%), Positives = 132/334 (39%), Gaps = 61/334 (18%)
Query: 270 PRPESLPSGQ-CMFKSLTSLEIIDC--PNFERLPDEL-GNLQALNRLIIDGTAIRELPEG 325
PE P G C F+ L ++ C E++P +L + L+ + I E+ +G
Sbjct: 14 EVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDG 70
Query: 326 -LGQLALLSKLELKNCSELEYISSSIF-KLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383
L L L L +++ IS F L +E + +S + LK PE +
Sbjct: 71 DFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMPKTL----- 123
Query: 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID----CKKLERLPDE-LGNLEALEE 438
L++++ ++ + S+ F L + +++ K + + ++ L
Sbjct: 124 -----QELRVHEN-EITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 439 LRVEGTGIREVPK----SLAQLALSKLKLKK--CSSFESLPS--RLYVS----------- 479
+R+ T I +P+ SL +L L K+ K +S + L + +L +S
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 480 -KSLTSLEIIDCKN--FMRLPDEIGNLEYLKVLTIKGTAIREVPES-------LGQLSSL 529
+ L + N +++P + + +Y++V+ + I + + + +S
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295
Query: 530 EWLVLSDNNLQ---IIPESLNQLSSLVSLKLSNN 560
+ L N +Q I P + + +++L N
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 40/289 (13%), Positives = 101/289 (34%), Gaps = 85/289 (29%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC--S 122
NL +L + +K++++ LV L+R+ L ++L +LP+ + + L+ L + +
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPE-KMPKTLQELRVHENEIT 134
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHL 182
+ + S LN++ V++L + S ++ +G L + ++ ++
Sbjct: 135 KVRK--SVFNGLNQMIVVELGTNP--------LKSSGIENGAFQGMKKLSYI-RIADTNI 183
Query: 183 RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQ 242
+ +P + ++ EL + ++ + ++ K NL
Sbjct: 184 TT-----------IPQGL--PPSLTELHLDGN-KITKVDAASLK----------GLNNLA 219
Query: 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDE 302
L + +I ++ +G + L +
Sbjct: 220 KLGLSFNSI---------------------SAVDNG--SLANTPHLRELH---------- 246
Query: 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIF 351
++ + ++P GL + + L N + + I S+ F
Sbjct: 247 -----------LNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDF 283
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 4e-19
Identities = 85/512 (16%), Positives = 172/512 (33%), Gaps = 60/512 (11%)
Query: 97 YSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI- 155
L +P L+Q IL++ S I L+KL +L + + + L S+
Sbjct: 8 SKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVF 65
Query: 156 -HSKYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPSS--IKCLSNIGELL 210
++ L+ L L L + + L L + LP +S + L
Sbjct: 66 KFNQELEYLDLSHN-KLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121
Query: 211 IYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCP 270
+ + LE S + + + E P ++ + L +
Sbjct: 122 LSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL------QDFNTESLHIVFPT 174
Query: 271 RPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLA 330
E K++ +LE+ N + + ++ L+ L L
Sbjct: 175 NKEFHFILDVSVKTVANLELS---NIKCVLEDNKCSYFLSILA-----------KLQTNP 220
Query: 331 LLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSV 390
LS L L N I +L ++ + SN+K ++ F + D SG + +
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG-TSLKALS 279
Query: 391 LKLNKCSKLESLPSSLCMFKSLTSLEI--IDCKKLERLPDEL-GNLEALEELRVEGTGIR 447
+ S + ++ +++ I + + L +
Sbjct: 280 IHQVVSDVFGFPQSYI--YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 448 EVP-------KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN----FMRL 496
+ L L L +LK L ++ + SL+ +D +
Sbjct: 338 DTVFENCGHLTELETLILQMNQLK------ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 497 PDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSL 555
+ + L L + + + + L ++ L L N ++ IP+ + +L +L L
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 556 KLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586
+++N L+ +P+ D L+SL+ + L N D
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 61/341 (17%), Positives = 120/341 (35%), Gaps = 30/341 (8%)
Query: 274 SLPSGQCMFKSLTSLEIID--CPNFERLP-DELGNLQALNRLIIDGTAIRELPEGLGQLA 330
+LP + F +++ L+ + + E+ + +L L++ G E E L
Sbjct: 104 ALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE-KEDPEGLQ 161
Query: 331 LLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSV 390
+ L SV+++ SN+K E C+ S + ++ ++
Sbjct: 162 DFNTESLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Query: 391 LKLNKCSKLESLPS-------SLCMFKSLTSLEIIDCKKLERLPDELGNL--EALEELRV 441
N L ++ I + K +L + +L+ L +
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280
Query: 442 EGTGIRE--VPKSLAQLALSKLKLKK--CSSFESLPSRLYVSKSLTSLEIIDCKN--FMR 495
P+S S + +K S + ++ +D N
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD 338
Query: 496 LPDEI-GNLEYLKVLTIKGTAIREVPESLG---QLSSLEWLVLSDNNLQII--PESLNQL 549
E G+L L+ L ++ ++E+ + Q+ SL+ L +S N++ +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 550 SSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
SL+SL +S+N L R +K LDL N + IP+
Sbjct: 399 KSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPK 438
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 52/398 (13%), Positives = 122/398 (30%), Gaps = 73/398 (18%)
Query: 226 KLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSL 285
+ L + I L+ L + I + L +FK
Sbjct: 32 YISELWTSDILSLSKLRILIISHNRI---------------------QYLDIS--VFKFN 68
Query: 286 TSLEIIDCPN--FERLP-DELGNLQALNRLIIDGTAIRELPEG--LGQLALLSKLELKNC 340
LE +D + ++ NL+ L+ + A LP G ++ L L L
Sbjct: 69 QELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 341 SELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLE 400
L+ + I++ + K + + E + +
Sbjct: 126 -----------HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174
Query: 401 SLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSK 460
+ + S+ ++ ++ ++ + ++ L L T + +L + +
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234
Query: 461 LKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520
+ + Y S ++++++ +F +L+ L + +
Sbjct: 235 NSFIRILQLVWHTTVWYFS--ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 521 ESL-------------------------GQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVS 554
+ ++S L S+N L + E+ L+ L +
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 555 LKLSNNNLERIPER---LDPLSSLKYLDLFENNLDRIP 589
L L N L+ + + + SL+ LD+ +N++
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 81/566 (14%), Positives = 160/566 (28%), Gaps = 132/566 (23%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF---TELRYFEWHQFPLKTLNILHWE 65
++ +++LR+L + L+ F EL Y + L ++
Sbjct: 35 ELWTSDILSLSKLRILIISH----NRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV 90
Query: 66 NLVSLKMPGSKVTQLWDD--VQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSS 123
NL L + + L N+ LK + L + L K L +A L
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGE 149
Query: 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLR 183
+ L L I +K + SN+K + + C
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 184 STLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQF 243
+ + + ++ + L + + + N I +L + ++ N++
Sbjct: 210 LS----------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 244 LEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FERLPD 301
SL +L I + F
Sbjct: 260 QGQLDFRDFDYS--------------------------GTSLKALSIHQVVSDVFGFPQS 293
Query: 302 EL-GNLQALNRLIIDGTAIRELPEGL-GQLALLSKLELKNCSELEYISSSIFKLKSVESI 359
+ +N + R + +++ L+ N L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-----------LLTDTVFE 342
Query: 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID 419
+ + L+ L L ++L+ L M + SL+ +D
Sbjct: 343 NCGHLTELE---------------------TLILQ-MNQLKELSKIAEMTTQMKSLQQLD 380
Query: 420 C--KKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477
+ + G KSL L +S L + F LP R
Sbjct: 381 ISQNSVSYDEKK---------------GDCSWTKSLLSLNMSSNILTD-TIFRCLPPR-- 422
Query: 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDN 537
+KVL + I+ +P+ + +L +L+ L ++ N
Sbjct: 423 ----------------------------IKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454
Query: 538 NLQIIPE-SLNQLSSLVSLKLSNNNL 562
L+ +P+ ++L+SL + L N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 449 VPKSLAQLALSKLKLKK--CSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYL 506
+ + L +S+ + + S SL + S ++ +D F + L
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-------L 71
Query: 507 KVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES--LNQLSSLVSLKLSNNNLER 564
+ L + + ++ +L+ L LS N +P +S L L LS +LE+
Sbjct: 72 EYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 565 IPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616
++ + L E + + + +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 80/546 (14%), Positives = 149/546 (27%), Gaps = 164/546 (30%)
Query: 91 KRIDLKYSKLLTKLPDLSLAQNLEILDLGYC--SSLTETHSSIQYLNKLEVLDLDRCKSL 148
+ + T L LD + +T I+ L L L +
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG----IEKLTGLTKLICTSNN-I 76
Query: 149 TSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGE 208
T+L S ++ L L L NL + L+ +
Sbjct: 77 TTLDLSQNTN-LTYLACDSN-KLTNLD------------------------VTPLTKLTY 110
Query: 209 LLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKK 268
L + K L + + + P L +L +
Sbjct: 111 LNCDTNK--------------LTKLDVSQNPLLTYLNCARNTL----------------- 139
Query: 269 CPRPESLPSGQCMFKSLTSLEIIDCPNFERL-PDELGNLQALNRLIIDGTAIRELPEGLG 327
+ T L +DC +++ ++ L L I EL +
Sbjct: 140 ----TEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188
Query: 328 QLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIP 387
Q LL++L ++ ++++ L
Sbjct: 189 QNKLLNRLNCDTN--------------NITKLDLNQNIQLT------------------- 215
Query: 388 SSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTG 445
L + KL + LT L DC L L + L L L T
Sbjct: 216 --FLDCSSN-KLTEID-----VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD 265
Query: 446 IREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505
+ E+ L+ L + C+ L ++ +
Sbjct: 266 LLEID-------LTHN------------------TQLIYFQAEGCRKIKEL--DVTHNTQ 298
Query: 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565
L +L + I E+ L Q L +L L++ L + ++ + L SL N +++
Sbjct: 299 LYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354
Query: 566 PERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLR-NCLKLDPNELS 624
+ + +L E +P T+ L++ + + L N ++
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMP----------KETLTNNSLTIAVSPDLLDQFGNPMN 403
Query: 625 EIIKDG 630
DG
Sbjct: 404 IEPGDG 409
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 1e-17
Identities = 71/503 (14%), Positives = 141/503 (28%), Gaps = 116/503 (23%)
Query: 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCS- 169
N S + L L LD +T + L +L+ +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNI 76
Query: 170 ---NLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226
+L +T S + L + +L ++ K
Sbjct: 77 TTLDLSQNTNLTYLACDSN-------------------KLTNLDVTPLTKLTYLNCDTNK 117
Query: 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
L + + + P L +L + + T
Sbjct: 118 L---TKLDVSQNPLLTYLNCARNTL---------------------TEID-----VSHNT 148
Query: 287 SLEIIDCPNFERL-PDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY 345
L +DC +++ ++ L L I EL + Q LL++L +
Sbjct: 149 QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN---- 202
Query: 346 ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSS 405
+ ++++ L L + KL +
Sbjct: 203 ----------ITKLDLNQNIQLT---------------------FLDCSSN-KLTEID-- 228
Query: 406 LCMFKSLTSLEIIDCK--KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKL 463
LT L DC L L + L L L T + E+ + L +
Sbjct: 229 ---VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLT-HNTQLIYFQA 282
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523
+ C + L T L ++DC+ ++ L L + T + E+ +
Sbjct: 283 EGCRKIKELDV-----THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--V 335
Query: 524 GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSL------KY 577
+ L+ L + ++Q + ++ +L + + +P+ +SL
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394
Query: 578 LDLFENNLDRIPEYLRSFPTSIP 600
LD F N ++ P + +
Sbjct: 395 LDQFGNPMNIEPGDGGVYDQATN 417
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 74/519 (14%), Positives = 139/519 (26%), Gaps = 174/519 (33%)
Query: 60 NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLG 119
I L L + +T L D+ +L + +K LT L L L L+
Sbjct: 59 GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNK-LTNLDVTPL-TKLTYLNCD 114
Query: 120 YCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTS 179
NKL LD+ + LT L + L + + + L L
Sbjct: 115 T--------------NKLTKLDVSQNPLLTYL--NCARNTLTEIDVSHNTQLTEL----D 154
Query: 180 CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239
CHL + L + + + L K + + + +
Sbjct: 155 CHLNKKITKL---------DVTPQTQLTTLDCSFNK--------------ITELDVSQNK 191
Query: 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FE 297
L L + NI L L +DC +
Sbjct: 192 LLNRLNCDTNNI---------------------TKLD-----LNQNIQLTFLDCSSNKLT 225
Query: 298 RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVE 357
+ + L L + EL S+L + L
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLTELDVS-------------TLSKLTTLHCIQTDLL--- 267
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
I++++ + L + C K++ L T L +
Sbjct: 268 EIDLTHNTQLI---------------------YFQAEGCRKIKELD-----VTHNTQLYL 301
Query: 418 IDCK--KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSR 475
+DC+ + L L L L + T
Sbjct: 302 LDCQAAGITELD--LSQNPKLVYLYLNNT------------------------------- 328
Query: 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLS 535
LT L++ + LK L+ I++ +G++ +L +
Sbjct: 329 -----ELTELDV-------------SHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEA 369
Query: 536 DNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSS 574
+ +P+ +SL ++ +S + L++ ++
Sbjct: 370 EGQTITMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEPG 407
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-18
Identities = 61/311 (19%), Positives = 109/311 (35%), Gaps = 70/311 (22%)
Query: 290 IIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYI 346
+ C F +P+ + L + I+ L + L +LEL + +
Sbjct: 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAV 71
Query: 347 SSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL 406
F +N NL+ L L +L+ +P
Sbjct: 72 EPGAF----------NNLFNLR---------------------TLGLRSN-RLKLIPLG- 98
Query: 407 CMFKSLTSLEIIDCK--KLERLPDEL-GNLEALEELRVEGTGIREVPKSLAQLALSKLKL 463
+F L++L +D K+ L D + +L L+ L V + +
Sbjct: 99 -VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR----------- 146
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPE- 521
+F L S L L + C N +P E +L L VL ++ I + +
Sbjct: 147 ----AFSGLNS-------LEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 522 SLGQLSSLEWLVLSDNN-LQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLD 579
S +L L+ L +S L + + +L SL +++ NL +P + L L++L+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254
Query: 580 LFENNLDRIPE 590
L N + I
Sbjct: 255 LSYNPISTIEG 265
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 56/292 (19%), Positives = 108/292 (36%), Gaps = 37/292 (12%)
Query: 300 PDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK-LKSVE 357
DE + L L ++ + + G L L L L++ L+ I +F L ++
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLT 107
Query: 358 SIEISNCSNLKGFPEIPFCN--------IDGSGIERIPSS---------VLKLNKCSKLE 400
++IS + + F + + + + I L L KC L
Sbjct: 108 KLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLT 165
Query: 401 SLPSSLCMFKSLTSLEIID--CKKLERLPDE-LGNLEALEELRVEGTGIREV--PKSLAQ 455
S+P+ L L ++ + + D L L+ L + + P L
Sbjct: 166 SIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Query: 456 LALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLTIK 512
L L+ L + C+ ++P + L L ++ + + L L+ + +
Sbjct: 224 LNLTSLSITHCN-LTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 513 GTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNL 562
G + V + L+ L L +S N L + ES+ + + +L +L L +N L
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 53/336 (15%), Positives = 103/336 (30%), Gaps = 77/336 (22%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
L + +++ L D + L+ ++L + + + + + NL L L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNR 91
Query: 123 SLTETHSSI-QYLNKLEVLDLDRCKSLTSLP--------------------TSIHS---- 157
L + L+ L LD+ K + L I
Sbjct: 92 -LKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 158 --KYLKRLVLRGCSNLKNLPKMTSCHLRS--TLPLLGVGIEELPSSI-KCLSNIGELLIY 212
L++L L C NL ++P HL L L + I + K L + L I
Sbjct: 150 GLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 213 SCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRP 272
L+ ++ + NL L + CN+
Sbjct: 209 HWPYLDTMTPNCL-----------YGLNLTSLSITHCNL--------------------- 236
Query: 273 ESLPSGQCMFKSLTSLEIIDCPN--FERLPDE-LGNLQALNRLIIDGTAIRELPEG-LGQ 328
++P + L L ++ + L L L + + G + +
Sbjct: 237 TAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 329 LALLSKLELKNCSELEYISSSIFK-LKSVESIEISN 363
L L L + L + S+F + ++E++ + +
Sbjct: 295 LNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 35/240 (14%)
Query: 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWENLV 68
+ Y F + L+ L+ N + + F+ L +L
Sbjct: 118 ILLDYMFQDLYNLKSLEV--GDND--LVYISHRAFSGLN------------------SLE 155
Query: 69 SLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLT 125
L + +T + + +L L + L++ + + D S L++L++ + L
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLR 183
+ Y L L + C LT++P H YL+ L L + + + L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELL 272
Query: 184 S--TLPLLGVGIEELPSSI-KCLSNIGELLIYSCKRLENISSSIFK-LQFLESIRIHRCP 239
+ L+G + + + L+ + L + + L + S+F + LE++ + P
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 5e-18
Identities = 69/356 (19%), Positives = 129/356 (36%), Gaps = 50/356 (14%)
Query: 274 SLPSGQCMFKSLTSLEIIDCPNFERL----PDELGNLQALNRLIIDGTAIRELPEG-LGQ 328
L F L L+ + + L +L L +D +L G
Sbjct: 44 ELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101
Query: 329 LALLSKLELKNCS-ELEYISSSIF-KLKSVESIEISNCSNLKGF-PEIPFCN-------- 377
LA L L L C+ + +S + F L S+E + + + +N+K P F N
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLD 160
Query: 378 IDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN---LE 434
+ + ++ I L + L L+S+ + D + ++ GN
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLL--------RLSSITLQDMNEYWLGWEKCGNPFKNT 212
Query: 435 ALEELRVEGTGIREVPKSLAQLALSKLKLKK--------------CSSFESLPSRLYVSK 480
++ L + G G +E A++ K++ ++F+ + +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 481 SLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSD 536
+ ++ D L + + L+ LT+ I ++ + + L+ L L LS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 537 NNLQIIPE-SLNQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N L I L L L LS N++ + ++ L +LK L L N L +P+
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 70/502 (13%), Positives = 148/502 (29%), Gaps = 125/502 (24%)
Query: 98 SKLLTKLPDLSLAQNLEILDLGYCSSLTE-THSSIQYLNKLEVLDLDRCKSLTSLPTSI- 155
++ L ++P+L ++ +DL +S+ E +S L L+ L +++ + +
Sbjct: 19 NRGLHQVPELP--AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 156 -HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSC 214
L L L + L + L+N+ L + C
Sbjct: 76 RGLSSLIILKLDY-NQFLQLE---------------------TGAFNGLANLEVLTLTQC 113
Query: 215 K-RLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPE 273
+S + FK +L+ L + NI +
Sbjct: 114 NLDGAVLSGNFFK----------PLTSLEMLVLRDNNI---------------------K 142
Query: 274 SLPSGQCMFKSLTSLEIIDCPN--FERLP-DELGNLQALNRLIIDGTAIRELPEGLGQLA 330
+ F ++ ++D + + ++L N Q + ++ ++I L
Sbjct: 143 KIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 331 LLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSV 390
+ + + S K + + + N G
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----- 256
Query: 391 LKLNKCSKLESLPSSLCMFKSLTSLEIIDC--KKLERLPDEL-GNLEALEELRVEGTGIR 447
+ + + + ++ D K+ L + + LE+L + I
Sbjct: 257 ----GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 448 EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK 507
++ ++F L L
Sbjct: 313 KIDD---------------NAFWGLTH-------------------------------LL 326
Query: 508 VLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERI 565
L + + + L LE L LS N+++ + + S L +L L L N L+ +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 566 PER-LDPLSSLKYLDLFENNLD 586
P+ D L+SL+ + L N D
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 20/192 (10%)
Query: 444 TGIREVPKSLAQLALSKLKLKK--CSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI- 500
+ E+P + + LS + + +SF L L L++ + + +
Sbjct: 23 HQVPELPAHVNYVDLSLNSIAELNETSFSRLQD-------LQFLKVEQQTPGLVIRNNTF 75
Query: 501 GNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQ--IIPE-SLNQLSSLVSLK 556
L L +L + ++ L++LE L L+ NL ++ L+SL L
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 557 LSNNNLERIPER--LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRN 614
L +NN+++I + LDL N + I E FT LRLS
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLSSI--T 191
Query: 615 CLKLDPNELSEI 626
++ L
Sbjct: 192 LQDMNEYWLGWE 203
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 57/351 (16%), Positives = 117/351 (33%), Gaps = 41/351 (11%)
Query: 85 QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYC--SSLTETHSSIQYLNKLEVL 140
+ L SL + L Y++ +L + NLE+L L C + + + L LE+L
Sbjct: 76 RGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134
Query: 141 DLDRCKSLTSLPTSI---HSKYLKRLVLRG----CSNLKNLPKMTSCHLRSTLPLLGVGI 193
L + + + + + L L ++L H L L + +
Sbjct: 135 VLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT-LLRLSSITL 192
Query: 194 EELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDG 253
+++ G + + S + + R ++ +
Sbjct: 193 QDMNEYWLGWEKCGNPF--KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250
Query: 254 TRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FERLPDEL-GNLQALN 310
+ K + + ++ D L + + L
Sbjct: 251 NMGSSFGHTNFK--------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302
Query: 311 RLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIF-KLKSVESIEISNCSNLK 368
+L + I ++ + L L KL L + L I S +F L +E +++S +++
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYN-HIR 360
Query: 369 GFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIID 419
+ F G+ + L L+ +L+S+P + F LTSL+ I
Sbjct: 361 ALGDQSF-----LGLPNL--KELALDTN-QLKSVPDGI--FDRLTSLQKIW 401
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 48/298 (16%), Positives = 98/298 (32%), Gaps = 57/298 (19%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKL----NKCSKLESLPSSLCMFKSLTSLEII 418
C N +G ++P +P+ V + N ++L +S + L L++
Sbjct: 16 ICIN-RGLHQVP----------ELPAHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVE 62
Query: 419 DCKKLERLPDEL-GNLEALEELRVEGTGIREVPK-------SLAQLALSKLKLKKCS--- 467
+ + L +L L+++ ++ +L L L++ L
Sbjct: 63 QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
Query: 468 -SFESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPES 522
F+ L S L + ++ ++ P N+ VL + ++ + E
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQ----------PASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 523 L---GQLSSLEWLVLSDNNLQIIPE---------SLNQLSSLVSLKLSNNNLERIPER-- 568
Q L LS LQ + E + + +S+ +L LS N + +
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
Query: 569 LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
D ++ K L +N + P FT L L +++ +
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 8e-18
Identities = 64/268 (23%), Positives = 105/268 (39%), Gaps = 45/268 (16%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIID-- 419
C++ KG +P IPSS +L + +KL+SLP +F LT L +
Sbjct: 13 RCNS-KGLTSVP---------TGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLS 60
Query: 420 ---CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL-ALSKLKLKKC--------S 467
+L+ L + G+ + + L L L + S
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120
Query: 468 SFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKG-TAIREVPE-SLG 524
F SL + L L+I + + I L L+VL + G +
Sbjct: 121 VFLSLRN-------LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 525 QLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
+L +L +L LS L+ + + N LSSL L +S+NN + L+SL+ LD
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 583 NNLDRIPEY-LRSFPTSIPSEFTSLRLS 609
N++ + L+ FP+S+ L L+
Sbjct: 233 NHIMTSKKQELQHFPSSL----AFLNLT 256
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 21/149 (14%)
Query: 484 SLEIIDC--KNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQ 540
S I C K +P I L ++ ++ +P +L+ L L LS N L
Sbjct: 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 541 II---PESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPT 597
+S +SL L LS N + + L L++LD +NL ++ E
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------- 118
Query: 598 SIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
S F SLR +L L +
Sbjct: 119 --FSVFLSLR---NLIY-LDISHTHTRVA 141
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDE--LGNLEALEELRVEGTGIREVPK-SLA 454
+ ++ S+ + L L+ L+++ + +L L L + T R
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 455 QL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLT 510
L +L LK+ S E+ ++ L +L +D +L +L L+VL
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 511 IKGTAIREVPES-LGQLSSLEWLVLSDNNLQIIPESL--NQLSSLVSLKLSNNNL 562
+ + L+SL+ L S N++ + + SSL L L+ N+
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 64/288 (22%)
Query: 101 LTKLPDLSLAQNLEILDLGYCSSLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSIHSKY 159
LT +P + + L+L L + L +L L L + K
Sbjct: 19 LTSVPT-GIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG--------LSFKG 68
Query: 160 LKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN 219
G ++LK L L G+ + S+ L + L +
Sbjct: 69 CCSQSDFGTTSLKYL------DLSFN------GVITMSSNFLGLEQLEHLDFQHSNLKQM 116
Query: 220 ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279
S+F NL +L++ + +G
Sbjct: 117 SEFSVF----------LSLRNLIYLDISHTHT---------------------RVAFNG- 144
Query: 280 CMFKSLTSLEIID---CPNFERLPDE-LGNLQALNRLIIDGTAIRELPEG-LGQLALLSK 334
+F L+SLE++ E + L+ L L + + +L L+ L
Sbjct: 145 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 335 LELKNCSELEYISSSIFK-LKSVESIEISNCSNLKGFPEIPFCNIDGS 381
L + + + + + +K L S++ ++ S +++ + + S
Sbjct: 204 LNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSS 249
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 30/189 (15%)
Query: 7 EIQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWEN 66
+ F + +L L F + S V F LR N
Sbjct: 89 GVITMSSNFLGLEQLEHLDF--QHSNLKQMSEFSV-FLSLR------------------N 127
Query: 67 LVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSS 123
L+ L + + ++ + L SL+ + + + +NL LDL C
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q 186
Query: 124 LTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSIHS--KYLKRLVLRGCSNLKNLPKMTSC 180
L + + L+ L+VL++ SL T + L+ L +++ K
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQ 244
Query: 181 HLRSTLPLL 189
H S+L L
Sbjct: 245 HFPSSLAFL 253
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 69/337 (20%), Positives = 117/337 (34%), Gaps = 65/337 (19%)
Query: 270 PRPESLP---SGQCMFKSLTSLEIIDC--PNFERLPDEL-GNLQALNRLIIDGTAIRELP 323
P +SLP S C F L ++ C + +P E+ + L+ + I EL
Sbjct: 14 PDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD---LQNNDISELR 70
Query: 324 EG-LGQLALLSKLELKNCSELEYISSSIF-KLKSVESIEISNCSNLKGFPEIPFCNIDGS 381
+ L L L L N ++ I F L+ ++ + IS
Sbjct: 71 KDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK------------------ 111
Query: 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE-LGNLEALEELR 440
N L +P +L SL L I D + + ++P L + +
Sbjct: 112 ------------NH---LVEIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIE 153
Query: 441 VEGTGIREV---PKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP 497
+ G + P + L L+ L++ + +P L ++L L + K +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNK-IQAIE 209
Query: 498 DEI-GNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSL 555
E L L + IR + SL L +L L L +N L +P L L L +
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269
Query: 556 KLSNNNLERIPE-------RLDPLSSLKYLDLFENNL 585
L NN+ ++ + + LF N +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 40/310 (12%), Positives = 96/310 (30%), Gaps = 71/310 (22%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSL 124
+L +L + +K++++ + L L+++ + + L ++P +L +L L +
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPP-NLPSSLVELRIHDNRIR 136
Query: 125 TETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRS 184
L + +++ + + + G L L +++ L
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNP--------LENSGFEPGAFDGL-KLNYL-RISEAKLTG 186
Query: 185 TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFL 244
+P + + EL + K ++ I R L L
Sbjct: 187 -----------IPKDL--PETLNELHLDHNK-IQAIELEDLL----------RYSKLYRL 222
Query: 245 EMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN--FERLPDE 302
+ I + +G L +L + N R+P
Sbjct: 223 GLGHNQI---------------------RMIENG--SLSFLPTLRELHLDNNKLSRVPAG 259
Query: 303 LGNLQALNRLIIDGTAIRELPEG-------LGQLALLSKLEL-KNCSELEYISSSIFK-L 353
L +L+ L + + I ++ + A + + L N + + F+ +
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Query: 354 KSVESIEISN 363
+I+ N
Sbjct: 320 TDRLAIQFGN 329
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 12/204 (5%)
Query: 396 CS--KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-S 452
C L+++P + + + + + L L + + + +
Sbjct: 18 CPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 453 LAQL-ALSKLKLKKCSSFESLPSRLYVS-KSLTSLEIIDCKNFMRLPDEI-GNLEYLKVL 509
L L +L L + S+ + L +L + C L + L L+ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYL 134
Query: 510 TIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPE 567
++ A++ +P+ + L +L L L N + +PE + L SL L L N + +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 568 R-LDPLSSLKYLDLFENNLDRIPE 590
L L L LF NNL +P
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPT 218
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 34/205 (16%)
Query: 390 VLKLNKCSKLESLPSSLCMFKSLTSLEIIDC---KKLERLPDE-LGNLEALEELRVEGTG 445
+L L+ L + ++ F L LE +D +L + L L L ++ G
Sbjct: 60 ILWLHSN-VLARIDAAA--FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 446 IREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLE 504
++E+ L F L + L L + D LPD+ +L
Sbjct: 117 LQELGPGL---------------FRGLAA-------LQYLYLQDNA-LQALPDDTFRDLG 153
Query: 505 YLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNL 562
L L + G I VPE + L SL+ L+L N + + + L L++L L NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 563 ERIPER-LDPLSSLKYLDLFENNLD 586
+P L PL +L+YL L +N
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCS 122
NL L + + + ++ L L+++DL + L + + L L L C
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC- 115
Query: 123 SLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTS 179
L E + + L L+ L L L +LP L L L G + + ++P+
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG-NRISSVPERAF 173
Query: 180 CHLRS--TLPLLGVGIEELPSSI-KCLSNIGELLIYSCKRLENISSSIFK-LQFLESIRI 235
L S L L + + + L + L +++ L + + L+ L+ +R+
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRL 232
Query: 236 HRCP 239
+ P
Sbjct: 233 NDNP 236
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 86/508 (16%), Positives = 178/508 (35%), Gaps = 54/508 (10%)
Query: 97 YSKLLTKLPDLSLAQNLEILDLGYCSSLTE-THSSIQYLNKLEVLDLDRCKSLTSLPTSI 155
++ LT +P L + L L +S++E I +L++L VL L + + SL +
Sbjct: 39 SNRNLTHVPK-DLPPRTKALSL-SQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHV 95
Query: 156 --HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSS--IKCLSNIGELLI 211
++ L+ L + + L+N+ LR L L + LP L+ + L +
Sbjct: 96 FLFNQDLEYLDVS-HNRLQNISCCPMASLRH-LDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
Query: 212 YSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPR 271
+ + + L I + +L + + + ++ L L P
Sbjct: 154 SA-AKFRQLDLLPVAHLHLSCILL----DLVSYHIKGGETE--SLQIPNTTVLHLVFHPN 206
Query: 272 PESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLAL 331
+L L+ L + + + L +
Sbjct: 207 SLFSVQVNMSVNALGHLQ----------------LSNIKLNDENCQRLMTFLSELTRGPT 250
Query: 332 LSKLELKNCSELEYISSSIFKL---KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388
L + L++ S +F+ + VE + I N + + + ++ +
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMI 309
Query: 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE 448
+K + S+ ++ L I D + + + + L +
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP--PSPSSFTFLNFTQNVFTD 367
Query: 449 VP----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCK----NFMRLPDEI 500
+L +L L+ +F + K+++SLE +D N
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMT---KNMSSLETLDVSLNSLNSHAYDRTC 424
Query: 501 GNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559
E + VL + + V L ++ L L +N + IP+ + L +L L +++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQELNVAS 482
Query: 560 NNLERIPE-RLDPLSSLKYLDLFENNLD 586
N L+ +P+ D L+SL+Y+ L +N D
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 85/516 (16%), Positives = 162/516 (31%), Gaps = 104/516 (20%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGY--CS 122
L L++ +++ L V L+ +D+ +++L + + +L LDL +
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCCPM-ASLRHLDLSFNDFD 134
Query: 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLP-TSIHSKYLKRLVLRGCSN-LKNLPKMTSC 180
L L KL L L L + +L ++L S +K +
Sbjct: 135 VLPV-CKEFGNLTKLTFLGLSA-AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192
Query: 181 HLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPN 240
+T+ L L S +S + +L NI + Q L +
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMS----VNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248
Query: 241 LQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLP 300
L + +I+ T + + E L ++ +L I + + E
Sbjct: 249 PTLLNVTLQHIETTW--KCSVKLFQFFWPRPVEYL--------NIYNLTITERIDREEFT 298
Query: 301 DELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360
L++L + E L + +++ +K S
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSV--FAEMNIKMLS------------------- 337
Query: 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIID 419
S+ + PSS LN + +L L+ +
Sbjct: 338 ---ISDTPFIHMVCP---------PSPSSFTFLNFTQNVFTDSVFQ--GCSTLKRLQTLI 383
Query: 420 C-----KKLERLPDELGNLEALEELRVEGTGIREV--------PKSLAQLALSKLKLKKC 466
K ++ N+ +LE L V + +S+ L LS L
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG- 442
Query: 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQL 526
S F LP ++ KVL + I +P+ + L
Sbjct: 443 SVFRCLPPKV------------------------------KVLDLHNNRIMSIPKDVTHL 472
Query: 527 SSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNN 561
+L+ L ++ N L+ +P+ ++L+SL + L +N
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 57/355 (16%), Positives = 116/355 (32%), Gaps = 56/355 (15%)
Query: 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELK 338
++LT + + LP +AL+ + +I EL + L+ L L L
Sbjct: 38 YSNRNLTHV-------PKDLPP---RTKALS---LSQNSISELRMPDISFLSELRVLRLS 84
Query: 339 NCSELEYISSSIF-KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCS 397
+ + + +F + +E +++S+ + L+ P ++ L L+ +
Sbjct: 85 HN-RIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCCPMASL----------RHLDLS-FN 131
Query: 398 KLESLPSSLCMFKSLTSLEIID--CKKLERLP----------DELGNLEALEELRVEGTG 445
+ LP F +LT L + K +L L +L + E
Sbjct: 132 DFDVLPVC-KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190
Query: 446 IREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505
++ ++ L L S+ + ++ S L +C+ M E+
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250
Query: 506 LKVLTIKGTAIREVPE----SLGQLSSLEWLVLSDNNLQIIPE------SLNQLSSLVSL 555
L +T++ +E+L + + + + S L SL+
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
Query: 556 KLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLS 609
+ N E L + + L ++ I PS FT L +
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH----MVCPPSPSSFTFLNFT 361
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 58/297 (19%), Positives = 108/297 (36%), Gaps = 61/297 (20%)
Query: 300 PDELGNLQALNRLIIDGTAIRELPEGL-GQLALLSKLELKNCSELEYISSSIF-KLKSVE 357
+L L L++ I + E L L L+L L +SSS F L S+
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLT 127
Query: 358 SIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEI 417
+ + ++L + +F LT L+I
Sbjct: 128 FLNLLGN---------------------------------PYKTLGETS-LFSHLTKLQI 153
Query: 418 I---DCKKLERLPDE-LGNLEALEELRVEGTGIREVPK-SLAQL-ALSKLKLKKCSSFES 471
+ + ++ + L LEEL ++ + ++ SL + +S L L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HIL 212
Query: 472 LPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLE 530
L +S+E ++ L + T + + SL + +
Sbjct: 213 LLEIFV--DVTSSVECLE-------------LRDTDLDTFHFSELSTGETNSLIKKFTFR 257
Query: 531 WLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586
+ ++D +L + + LNQ+S L+ L+ S N L+ +P+ D L+SL+ + L N D
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-14
Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 21/211 (9%)
Query: 398 KLESLPSSLCMFKSLTSLEIIDCK--KLERLPDEL-GNLEALEELRVEGTGIREVPKSLA 454
+ ++ F SL SLE +D L L L +L L + G + + ++
Sbjct: 87 GINTIEEDS--FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 455 ---QLALSKLKLKKCSSFESLPSRLYVS-KSLTSLEIIDCKNFMRLPDEI-GNLEYLKVL 509
L L++ +F + + + L LEI + + +++ + L
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHL 203
Query: 510 TIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIP---------ESLNQLSSLVSLKLSN 559
+ + E + SS+E L L D +L SL + + ++K+++
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263
Query: 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
+L ++ + L+ +S L L+ N L +P+
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 53/297 (17%), Positives = 101/297 (34%), Gaps = 59/297 (19%)
Query: 88 VSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCSSLTETHSSI-QYLNKLEVLDLDR 144
++K +DL +++ T + + L + NL+ L L + L LE LDL
Sbjct: 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSY 109
Query: 145 CKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSI--KC 202
L++L +S + S+L L +L + L +
Sbjct: 110 NY-LSNLSSS---------WFKPLSSLTFL------NLLGNP------YKTLGETSLFSH 147
Query: 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNI----DGTRSKE 258
L+ + L + + I F L+ LE+ + ++ +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDF----------AGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 259 QPSSELKLKKCPRPESLPSGQCMFKSLTSLEI-------IDCPNFERLP----DELGNLQ 307
Q S L L L +S+E +D +F L + L
Sbjct: 198 QNVSHLILHMKQ-HILLLEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 308 ALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK-LKSVESIEISN 363
+ I ++ ++ + L Q++ L +LE L+ + IF L S++ I +
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 26/202 (12%)
Query: 66 NLVSLKMPGSKVTQLWDDV--QNLVSLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYC 121
+L L + G+ L + +L L+ + + TK+ A LE L++
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLP-------TSIHSKYLKRLVLRGCSNLKNL 174
+ S++ + + L L + L +S+ L+ L + L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTF-HFSEL 242
Query: 175 PKMTSCHLR-----STLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK-LQ 228
+ L + + + ++ + +S + EL +L+++ IF L
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT 301
Query: 229 FLESIRIHR------CPNLQFL 244
L+ I +H CP + +L
Sbjct: 302 SLQKIWLHTNPWDCSCPRIDYL 323
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 44/193 (22%), Positives = 66/193 (34%), Gaps = 40/193 (20%)
Query: 407 CMFKSLTSLEIIDC--KKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLK 464
C + S ++C + L LP + PK L LS+ L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALP----------------PDL---PKDTTILHLSENLLY 44
Query: 465 KCSS--FESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV 519
S +L + + LT L++ L L L + ++ +
Sbjct: 45 TFSLATLMPYTRLTQLNLDRAELTKLQVDG------------TLPVLGTLDLSHNQLQSL 92
Query: 520 PESLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKY 577
P L +L L +S N L +P L L L L N L+ +P L P L+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 578 LDLFENNLDRIPE 590
L L NNL +P
Sbjct: 153 LSLANNNLTELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 25/201 (12%)
Query: 396 CS--KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP--- 450
C L +LP L K T L + + L L +L ++ + ++
Sbjct: 17 CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 451 --KSLAQLALSKLKLKKCSS-FESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEIGNLE 504
L L LS +L+ ++LP+ L VS LTSL + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP----------LGALRGLG 124
Query: 505 YLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNL 562
L+ L +KG ++ +P L LE L L++NNL +P L N L +L +L L N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 563 ERIPERLDPLSSLKYLDLFEN 583
IP+ L + L N
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 9e-15
Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 6/206 (2%)
Query: 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLA 457
K L S L K L LE + L + + L+ L + + K++ +
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMR 418
Query: 458 LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR 517
+ L + + L + + + + L + L + +R
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHL--AHKDLTVLCHLEQLLLVTHLDLSHNRLR 476
Query: 518 EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPE--RLDPLSSL 575
+P +L L LE L SDN L+ + + L L L L NN L++ L L
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 576 KYLDLFENNLDRIPEYLRSFPTSIPS 601
L+L N+L + +PS
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPS 561
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 1e-13
Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 14/207 (6%)
Query: 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR----EVPK 451
+ E + L E+ +K L EL + + L+EL E + +
Sbjct: 335 KDRPECWCRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393
Query: 452 SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTI 511
+L L K L+ S+ +++ L+ + K + ++VL +
Sbjct: 394 ALDPLLYEKETLQYFSTLKAV-----DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 512 KGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDP 571
+ + L QL + L LS N L+ +P +L L L L+ S+N LE + +
Sbjct: 449 AHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VAN 506
Query: 572 LSSLKYLDLFENNLDRIPE--YLRSFP 596
L L+ L L N L + L S P
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCP 533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-08
Identities = 44/283 (15%), Positives = 76/283 (26%), Gaps = 40/283 (14%)
Query: 272 PESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLAL 331
P+ ++ E + + L R + L L
Sbjct: 314 PQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKE 373
Query: 332 LSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVL 391
L +LE +N L I + L + E + R
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRSK---- 428
Query: 392 KLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK 451
L + + L + K L L L L + L + +R +P
Sbjct: 429 ------FLLENSVLKMEYADVRVLHL-AHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPP 480
Query: 452 SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTI 511
+LA L + L L+ D N + D + NL L+ L +
Sbjct: 481 ALAAL-----------------------RCLEVLQASD--NALENVDGVANLPRLQELLL 515
Query: 512 KGTAIREVPE--SLGQLSSLEWLVLSDNNLQIIPESLNQLSSL 552
+++ L L L L N+L +L+ +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 394 NKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP--- 450
++ + F + K + L +++++ + I+ V
Sbjct: 9 TPIKQIFPDDA----FAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQ 62
Query: 451 --KSLAQLALSKLKLKKCSSFESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEY 505
++ +L L+ KL +L + L++ + + L + +L+
Sbjct: 63 YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS------------SLKDLKK 110
Query: 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565
LK L+++ I ++ L L LE L L +N + I L++L+ L +L L +N + I
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 168
Query: 566 PERLDPLSSLKYLDLFENNLDRIPE 590
L L+ L+ L L +N++ +
Sbjct: 169 VP-LAGLTKLQNLYLSKNHISDLRA 192
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 3e-08
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 35/214 (16%)
Query: 54 FPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNL 113
FP + + VT L S+ +I + + + + N+
Sbjct: 15 FPDDAF-----AETIKDNLKKKSVTDA-VTQNELNSIDQIIA-NNSDIKSVQGIQYLPNV 67
Query: 114 EILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC----- 168
L L LT+ + L L L LD K + L + K LK L L
Sbjct: 68 TKLFLNGN-KLTDI-KPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGISDI 124
Query: 169 SNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQ 228
+ L +LP++ S +L + I ++ + + L+ + L + + + +I + L
Sbjct: 125 NGLVHLPQLESLYLGNN------KITDI-TVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLT 175
Query: 229 FLESIR-----------IHRCPNLQFLEMPSCNI 251
L+++ + NL LE+ S
Sbjct: 176 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 431 GNLEALEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485
+ +L + + + ++ ++ L ++ + + L +L L
Sbjct: 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGL-------SNLERL 93
Query: 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE 544
I+ + L L +L I +A + + L + + LS N
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153
Query: 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNL 585
L L L SL + + + ++ L L F +
Sbjct: 154 PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 17/168 (10%)
Query: 427 PDELGNLEALEELRVEGTGIREVPKS----LAQLALSKLKLKKCSSFESLPSRLYVSKSL 482
PD +A + + + ++ L + L+ + + + E ++
Sbjct: 18 PDS--TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYA-------HNI 68
Query: 483 TSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI 541
L I + + I L L+ L I G + + +L L+SL L +S +
Sbjct: 69 KDLTINNIH--ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 542 I-PESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRI 588
+N L + S+ LS N L L LK L++ + +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL 539
SLT + + + N L I +K LTI + LS+LE L + ++
Sbjct: 44 NSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDV 100
Query: 540 Q-IIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLDRIPEYLRSFP 596
+L+ L+SL L +S++ + I +++ L + +DL N L++ P
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLT-KLPDLSLAQNLEILDLGYCSSL 124
N+ L + T + + L +L+R+ + + + K+P+LS +L +LD+ + +
Sbjct: 67 NIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 125 TETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC-----SNLKNLPKMTS 179
+ I L K+ +DL ++T + LK L ++ +++ PK+
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQ 185
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 22/169 (13%)
Query: 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCS 341
SLT + + + N L + + L I+ + L+ L +L +
Sbjct: 43 MNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99
Query: 342 ELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS----SVLKLNKCS 397
++ L S+ ++IS+ D S + +I + + + L+
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISH------------SAHDDSILTKINTLPKVNSIDLSYNG 147
Query: 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGI 446
+ + L L SL I + + + L +L I
Sbjct: 148 AITDI-MPLKTLPELKSLNIQFD-GVHDYRG-IEDFPKLNQLYAFSQTI 193
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 27/227 (11%)
Query: 404 SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP-----KSLAQLAL 458
+ S+ + + ++ + + L + +L + G + ++ K+L L L
Sbjct: 40 VTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL 97
Query: 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE 518
+ K+K SS + L L SL + N + + + +L L+ L + I +
Sbjct: 98 DENKVKDLSSLKDLKK-------LKSLSLEH--NGISDINGLVHLPQLESLYLGNNKITD 148
Query: 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYL 578
+ L +L+ L+ L L DN + I L L+ L +L LS N++ + L L +L L
Sbjct: 149 I-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 205
Query: 579 DLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSE 625
+LF P +S +V + + P +S+
Sbjct: 206 ELFSQECLNKPINHQSNLVVPN--------TVKNTDGSLVTPEIISD 244
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 39/210 (18%), Positives = 85/210 (40%), Gaps = 29/210 (13%)
Query: 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE 448
++ ++ S + F + K + L +++++ + I+
Sbjct: 7 TITVPTPIKQIFSDDA----FAETIKDNL-KKKSVTDAVT-QNELNSIDQIIANNSDIKS 60
Query: 449 VP-----KSLAQLALSKLKLKKCSSFESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEI 500
V ++ +L L+ KL +L + L++ + + L +
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS------------SL 108
Query: 501 GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560
+L+ LK L+++ I ++ L L LE L L +N + I L++L+ L +L L +N
Sbjct: 109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 166
Query: 561 NLERIPERLDPLSSLKYLDLFENNLDRIPE 590
+ I L L+ L+ L L +N++ +
Sbjct: 167 QISDIVP-LAGLTKLQNLYLSKNHISDLRA 195
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 33/213 (15%)
Query: 54 FPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNL 113
F + + VT L S+ +I + + + + N+
Sbjct: 18 FSDDAF-----AETIKDNLKKKSVTDA-VTQNELNSIDQIIA-NNSDIKSVQGIQYLPNV 70
Query: 114 EILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC----- 168
L L LT+ + L L L LD K + L + K LK L L
Sbjct: 71 TKLFLNGN-KLTDI-KPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 169 SNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS--SSIFK 226
+ L +LP++ S +L + I ++ + + L+ + L + + + +I + + K
Sbjct: 128 NGLVHLPQLESLYLGNN------KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTK 179
Query: 227 LQFL-------ESIR-IHRCPNLQFLEMPSCNI 251
LQ L +R + NL LE+ S
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 43/246 (17%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIIDC- 420
C F +IP + +P S L+ + L L S F S L+++D
Sbjct: 13 QCME-LNFYKIP---------DNLPFSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLS 60
Query: 421 -KKLERLPDEL-GNLEALEELRVEGTGIREVP-------KSLAQLALSKLKLKKCSS--F 469
+++ + D +L L L + G I+ + SL +L + L +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 470 ESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE----S 522
L + L V+ + S ++ + F L + L+ L + I+ +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEY--FSNLTN-------LEHLDLSSNKIQSIYCTDLRV 171
Query: 523 LGQLSSLEW-LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDL 580
L Q+ L L LS N + I + L L L N L+ +P+ D L+SL+ + L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Query: 581 FENNLD 586
N D
Sbjct: 232 HTNPWD 237
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 19/154 (12%)
Query: 481 SLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSD 536
S L+++D + D +L +L L + G I+ + LSSL+ LV +
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 537 NNLQIIPESL-NQLSSLVSLKLSNNNLERIPER--LDPLSSLKYLDLFENNLDRIPEYLR 593
NL + L +L L +++N ++ L++L++LDL N +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-------- 161
Query: 594 SFPTSIPSE-FTSLRLSVDLRNCLKLDPNELSEI 626
SI L L L L N ++ I
Sbjct: 162 ---QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 9e-13
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 484 SLEIIDC--KNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNL 539
+ I+ C + +P + + Y +L + + + + +L++L L+LS N+L
Sbjct: 19 ASNILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 540 QIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPT 597
I + + +L L LS+N+L + E L +L+ L L+ N++ +
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA----- 131
Query: 598 SIPSEFTSLRLSVDLRNCLKLDPNELSEIIKD 629
F + L+ L L N++S +
Sbjct: 132 -----FEDM---AQLQK-LYLSQNQISRFPVE 154
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 502 NLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSN 559
+ L+ L + + + L +LE L+L +N++ ++ + ++ L L LS
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 560 NNLERIPER----LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSL 606
N + R P + L L LDL N L ++P + L
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-12
Identities = 85/459 (18%), Positives = 142/459 (30%), Gaps = 167/459 (36%)
Query: 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLL--TKL 104
R + + L +L +VQN + +L K+L T+
Sbjct: 236 RLLKSKPYE-NCLLVL-------------------LNVQNAKAWNAFNLS-CKILLTTR- 273
Query: 105 PDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLV 164
+ L S+ T TH S+ + + L D KSL KYL
Sbjct: 274 -FKQVTDFL--------SAATTTHISLDHHSM--TLTPDEVKSLL-------LKYL---- 311
Query: 165 LRGCSNLKNLPK-MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLI-----------Y 212
C ++LP+ + + + P LS I E +
Sbjct: 312 --DCR-PQDLPREVLTTN-----PRR-------------LSIIAESIRDGLATWDNWKHV 350
Query: 213 SCKRLEN-ISSSIFKLQ-------------FLESIRIHRCPNLQFLEMPSCNIDGTRSKE 258
+C +L I SS+ L+ F S I P L + ++ K
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---P-TILLSLIWFDVI----KS 402
Query: 259 QPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD-------ELGNLQALNR 311
+ + K + SL +E + +P +L N AL+R
Sbjct: 403 DV--MVVVNKLHK-----------YSL--VEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 312 LIIDGTAIRELPEGLGQLALLSKLELKNCSELE---YISSSI-FKLKSVESIEISNCSNL 367
I+D + + + Y S I LK++E E +
Sbjct: 448 SIVD------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-----RM 490
Query: 368 KGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLE-----IID-CK 421
F + F +D +E+ K+ S + S+ +L L+ I D
Sbjct: 491 TLFRMV-F--LDFRFLEQ------KIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDP 539
Query: 422 KLERLPDELGN-LEALEELRVEGTGIREVPKSLAQLALS 459
K ERL + + + L +EE I L ++AL
Sbjct: 540 KYERLVNAILDFLPKIEE-----NLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 3e-11
Identities = 105/679 (15%), Positives = 192/679 (28%), Gaps = 227/679 (33%)
Query: 125 TETHSSIQYLNK--LEVL------DLDRCKSLTSLPTSIHSK--------------YLKR 162
ET QY K L V + D CK + +P SI SK R
Sbjct: 9 FET-GEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 163 LVLRGCSNLKNLPK--------------MTSCHLRSTLPLLGVGIEELPSSIKCLSNIGE 208
L S + + + M+ P + L N +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQ 124
Query: 209 LLI-YSCKRLE---NISSSIFKLQFLESIRIHRCPNLQFLEMPSCN-----IDGTRSKE- 258
+ Y+ RL+ + ++ +L+ +++ I + +D S +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID--------GVLGSGKTWVALDVCLSYKV 176
Query: 259 QPSSE-----LKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNL------- 306
Q + L LK C PE++ + L L PN+ D N+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 307 -QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCS 365
L RL+ + L L L N V++ + N
Sbjct: 231 QAELRRLLKS----KPYENCL--------LVLLN----------------VQNAKAWNAF 262
Query: 366 NLKGFPEIPFCNI-----DGSGIERIPSSVLK---LNKCSKLESLPSSLCMFKSLTSLEI 417
NL C I + + ++ L+ S + + L+
Sbjct: 263 NLS-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKY 310
Query: 418 IDCKKLERLPDE--LGNLEALEELRVEGTGIREVP---KSLAQLALSKLKLKKCSSFESL 472
+DC + + LP E N L + IR+ + + KL
Sbjct: 311 LDC-RPQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTI-------- 358
Query: 473 PSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTI--KGTAIREVPESLGQLSSLE 530
+ SL LE P E + L++ I P L LS +
Sbjct: 359 -----IESSLNVLE----------PAEY--RKMFDRLSVFPPSAHI---PTIL--LSLI- 395
Query: 531 WLVLSDNNLQIIPESLNQLSSL---------------VSLKLSNNNL----ERIPERLDP 571
W + +++ ++ L++ S + + LK+ N I + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 572 LSSLKYLDLFENNLDRIPEYLRSF---------PTSIPSEFTSLRLSVDLRNCLKLDPNE 622
+ DL LD +Y S + F + L D R
Sbjct: 456 PKTFDSDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFL--DFR--------- 501
Query: 623 LSEIIKDGWMKQSVNGETYITKSMYFPGN---EIPKWFRHQSTGSTISLKTPQPTGY-NK 678
+++Q + ++ + N ++ + + I P+ N
Sbjct: 502 --------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDNDPKYERLVNA 547
Query: 679 LMGFAFCVVVACSVSECCR 697
++ F + S+
Sbjct: 548 ILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 80/532 (15%), Positives = 153/532 (28%), Gaps = 191/532 (35%)
Query: 339 NCSELEYISSSIFKLKSVESI--EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKC 396
+C +++ + SI + ++ I S + +++ VL++N
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYK 92
Query: 397 SKLESLPSSLCMFKSLTSLEIIDCKKLERL--------------PDELGNL-EALEELRV 441
+ + + S+ + I+ + +RL L +AL ELR
Sbjct: 93 FLMSPI-KTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 442 E---------GTGIREVPKS-LAQLALSK-------------LKLKKCSSFESLP---SR 475
G+G K+ +A L LK C+S E++ +
Sbjct: 150 AKNVLIDGVLGSG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 476 LY--VSKSLTSLEIIDCKNFMRLPDEIGNL-EYLKVLTIKGTAIREVPESLGQLSSLEWL 532
L + + TS + + I ++ L+ L + L L
Sbjct: 205 LLYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKS----KPYENCL--------L 248
Query: 533 VLSD-NNLQIIPESLN-QLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
VL + N + + N L+ R + D LS+ + +
Sbjct: 249 VLLNVQNAKAW-NAFNLSCKILL--------TTRFKQVTDFLSAATTTHISLD------H 293
Query: 591 YLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNEL---------------SEIIKDG---W- 631
+ + + L L L P +L +E I+DG W
Sbjct: 294 HSMTL-----TPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 632 -------------MKQSVNG-ETYITKSMY-----FPGN-EIPKWFRHQSTGSTISLKTP 671
++ S+N E + M+ FP + IP +SL
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--------ILLSLIWF 397
Query: 672 QPTGYNKLMGFAFCVVVACSVSECCRHESVEDDRK---CNLFDVVCDRRS---------- 718
V V++ ++ VE K ++ + + +
Sbjct: 398 DVIKS----------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 719 ---EGY----------------DSYTSSYLG----KISHVESDHVFLGSSIF 747
+ Y D Y S++G I H E +F +F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVF 497
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 30/211 (14%)
Query: 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE 448
S+ + +++ P + + + + L L ++ + + I+
Sbjct: 2 SIQRPTPINQVFPDPG----LANAVKQNLGK-QSVTDLVS-QKELSGVQNFNGDNSNIQS 55
Query: 449 VP-----KSLAQLALSKLKLKKCSSFESLPS--RLYVSK-SLTSLEIIDCKNFMRLPDEI 500
+ +L +L LS ++ S + L L V++ L +L I
Sbjct: 56 LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-------- 107
Query: 501 GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560
L L + +R+ +SL L +LE L + +N L+ I L LS L L L N
Sbjct: 108 -----LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160
Query: 561 NLERIPERLDPLSSLKYLDLFENNLDRIPEY 591
+ L L + ++DL P
Sbjct: 161 EITNTGG-LTRLKKVNWIDLTGQKCVNEPVK 190
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 49/235 (20%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSS--VLKLNKCSKLESLPSSLCMFKSLTSLEIIDC 420
+CS+ K IP IP+ L L +KL SLPS F LT L ++
Sbjct: 22 DCSS-KKLTAIP---------SNIPADTKKLDLQS-NKLSSLPSKA--FHRLTKLRLLYL 68
Query: 421 --KKLERLPDEL-GNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPS--R 475
KL+ LP + L+ LE L V ++ +P + F+ L +
Sbjct: 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV---------------FDQLVNLAE 113
Query: 476 LYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLV 533
L + + L SL P +L L L++ ++ +P+ + +L+SL+ L
Sbjct: 114 LRLDRNQLKSLP----------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 534 LSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLD 586
L +N L+ +PE ++L+ L +LKL NN L+R+PE D L LK L L EN D
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 452 SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN--FMRLPDEI-GNLEYLKV 508
L L L+ KL+ +LP+ + K L +LE + + LP + L L
Sbjct: 62 KLRLLYLNDNKLQ------TLPAG--IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 509 LTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIP 566
L + ++ +P + L+ L +L L N LQ +P+ + ++L+SL L+L NN L+R+P
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 567 ERL-DPLSSLKYLDLFENNLDRIPE 590
E D L+ LK L L N L R+PE
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPE 198
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 481 SLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSD 536
LT L ++ + LP I L+ L+ L + ++ +P + QL +L L L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 537 NNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N L+ +P + + L+ L L L N L+ +P+ + D L+SLK L L+ N L R+PE
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFE 582
+L+ L L L+DN LQ +P + +L +L +L +++N L+ +P + D L +L L L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 583 NNLDRIPEYLRSFPTSIPSE-FTSLRLSVDLRNCLKLDPNELSEI 626
N L S+P F SL L L L NEL +
Sbjct: 119 NQL-----------KSLPPRVFDSL---TKLTY-LSLGYNELQSL 148
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 44/235 (18%)
Query: 376 CNIDGSGIERIPS-----SVLKLNKCSKLESLPSSLCMFKSLTSLEIID---CKKLERLP 427
+ I+RIPS LKL + L ++PS F +L ++ I L++L
Sbjct: 16 FRVTCKDIQRIPSLPPSTQTLKLIET-HLRTIPSHA--FSNLPNISRIYVSIDVTLQQLE 72
Query: 428 DEL-GNLEALEELRVEGT-GIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485
NL + + + T + + + LP L L
Sbjct: 73 SHSFYNLSKVTHIEIRNTRNLTYIDPDA---------------LKELPL-------LKFL 110
Query: 486 EIIDCKNFMRLPDE--IGNLEYLKVLTIKG-TAIREVPESL--GQLSSLEWLVLSDNNLQ 540
I + PD + + + +L I + +P + G + L L +N
Sbjct: 111 GIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169
Query: 541 IIPESLNQLSSLVSLKLSNNN-LERIPERL--DPLSSLKYLDLFENNLDRIPEYL 592
+ + L ++ L+ N L I + S LD+ + ++ +P
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 11/171 (6%)
Query: 66 NLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCS 122
+ +LK+ + + + NL ++ RI + L +L S + +++
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 123 SLTETHSSI-QYLNKLEVLDLDRCKSLTSLP--TSIHS-KYLKRLVLRGCSNLKNLPKMT 178
+LT + L L+ L + L P T ++S L + + ++P
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 179 SCHLRS---TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226
L + TL L G + + + + + K L I F
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 26/167 (15%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 89 SLKRIDLKYSKLLTKLPDLSLA--QNLEILDLGYCSSLTETHSSI-QYLNKLEVLDLDRC 145
S + + L + L +P + + N+ + + +L + S L+K+ +++
Sbjct: 32 STQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 146 KSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVG----IEELPS- 198
++LT + LK L + LK P +T + +L + + +P
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 199 SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLE 245
+ + L N L ++ F L+++ +++ L ++
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 37/214 (17%)
Query: 414 SLEIIDC--KKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQL-ALSKLKLKKCSSF 469
S + C K+ +P +L ELR T +R + K + + L K+++ +
Sbjct: 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 470 ESLPSRLYVS-KSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPE----SL 523
E + + ++ + L + I N + + E NL L+ L I T I+ +P+
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 524 GQLSSLE-----------------------WLVLSDNNLQIIPES-LNQLSSLVSLKLSN 559
Q L+ L L+ N +Q I S N N
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
Query: 560 NNLERIPER-LDPLSSLKYLDLFENNLDRIPEYL 592
NNLE +P S LD+ + +P Y
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 63/233 (27%)
Query: 85 QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDR 144
NL L I ++ + L + + L L+ L +
Sbjct: 76 SNLPKLHEIRIEKANNLLYINPEAFQN----------------------LPNLQYLLISN 113
Query: 145 CKSLTSLP--TSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGV---GIEELPSS 199
+ LP IHS L ++ N+ + + + L +L + GI+E+ +S
Sbjct: 114 TG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172
Query: 200 IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQ 259
+ + EL + LE + + +F H L++ I
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVF----------HGASGPVILDISRTRI-------- 214
Query: 260 PSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLP--DELGNLQALN 310
SLPS ++L L N ++LP ++L L +
Sbjct: 215 -------------HSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 507 KVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERI 565
L + G VP+ L L + LS+N + + + ++ L++L LS N L I
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 566 PERL-DPLSSLKYLDLFENNLDRIPE 590
P R D L SL+ L L N++ +PE
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPE 119
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 479 SKSLTSL--EI--------IDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL-GQLS 527
+K L L I +D F +P E+ N ++L ++ + I + ++
Sbjct: 19 NKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 528 SLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNL 585
L L+LS N L+ IP + L SL L L N++ +PE + LS+L +L + N L
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Query: 586 D 586
Sbjct: 139 Y 139
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 507 KVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER 564
+ ++ I+ +P + L + LS+N + + + L SL SL L N +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 565 IPERL-DPLSSLKYLDLFENNLDRIPE 590
+P+ L + L SL+ L L N ++ +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRV 121
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 502 NLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSN 559
+ L+ + + I E+ + L SL LVL N + +P+SL L SL L L+
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113
Query: 560 NNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N + + L +L L L++N L I +
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 503 LEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNN 560
L L L + G I E+P+SL L SL+ L+L+ N + + + L +L L L +N
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138
Query: 561 NLERIPER-LDPLSSLKYLDLFENNLD 586
L+ I + PL +++ + L +N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 532 LVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIP 589
+ L N +++IP + + L + LSNN + + L SL L L+ N
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----- 91
Query: 590 EYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
+ P S+ SL+L L L+ N+++ +
Sbjct: 92 --ITELPKSLFEGLFSLQL-------LLLNANKINCL 119
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 502 NLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSN 559
L L+ + I ++ E + S + ++L+ N L+ + + L SL +L L +
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 560 NNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N + + LSS++ L L++N + +
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 507 KVLTIKGTAIREVPES--LGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLE 563
L + + + +L L + S+N + I E + S + + L++N LE
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 564 RIPERL-DPLSSLKYLDLFENNLDRIPE 590
+ ++ L SLK L L N + +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGN 122
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 503 LEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNN 560
+ + + + V + L SL+ L+L N + + S LSS+ L L +N
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Query: 561 NLERIPER-LDPLSSLKYLDLFENNLD 586
+ + D L SL L+L N +
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 53/280 (18%)
Query: 313 IIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPE 372
I TAI + LA K+ +++
Sbjct: 3 ITQPTAINVI-FPDPALANAIKIAAGKS-------------------NVTDTVTQADLDG 42
Query: 373 IPFCNIDGSGIERIPSSVLKLNKCSKLESLP------SSLCMFKSLTSLEIIDCK--KLE 424
I + G+G+ I + + L L + L K+LT + ++ L+
Sbjct: 43 ITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98
Query: 425 RLPDELGNLEALEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPS--RLY 477
+ + L++++ L + T I +V +L L L ++ S L + L
Sbjct: 99 NV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157
Query: 478 VS----------KSLTSLEIIDC-KNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQL 526
+ +L+ L + N + + +L L + +K I +V L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANT 216
Query: 527 SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP 566
S+L + L++ + P + +V + + I
Sbjct: 217 SNLFIVTLTNQTITNQPV-FYNNNLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 45/295 (15%), Positives = 88/295 (29%), Gaps = 68/295 (23%)
Query: 54 FPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNL 113
FP L N + + S VT +L + + + +T + + NL
Sbjct: 13 FPDPAL-----ANAIKIAAGKSNVTDT-VTQADLDGITTLSA-FGTGVTTIEGVQYLNNL 65
Query: 114 EILDLGYC--SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC--- 168
L+L + L + ++ L K+ L+L L ++ + +K L L
Sbjct: 66 IGLELKDNQITDL----APLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQIT 120
Query: 169 --SNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226
+ L L + +L I + S + L+N+ L I + + + +++
Sbjct: 121 DVTPLAGLSNLQVLYLDLN------QITNI-SPLAGLTNLQYLSIGNAQ-VSDLTP---- 168
Query: 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLT 286
+ L L+ I + SL
Sbjct: 169 --------LANLSKLTTLKADDNKI---------------------SDISP----LASLP 195
Query: 287 SLEIIDCPN--FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKN 339
+L + N + L N L + + I P L+ +K
Sbjct: 196 NLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV-FYNNNLVVPNVVKG 248
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 55/239 (23%)
Query: 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSLCMFKSLTSLEIIDC- 420
S P + + +K N K + + L S++ I
Sbjct: 4 TVST-PIKQIFP---------DDAFAETIKANLKKKSVTDAVT----QNELNSIDQIIAN 49
Query: 421 -KKLERLP--DELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477
++ + L N+ LAL KL S+ + L
Sbjct: 50 NSDIKSVQGIQYLPNVR--------------------YLALGGNKLHDISALKEL----- 84
Query: 478 VSKSLTSLEIIDCKN--FMRLPDEI-GNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLV 533
T+L + LP+ + L LK L + ++ +P+ + +L++L +L
Sbjct: 85 -----TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 534 LSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
L+ N LQ +P+ + ++L++L L LS N L+ +PE + D L+ LK L L++N L +P+
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 78/492 (15%), Positives = 161/492 (32%), Gaps = 83/492 (16%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKL----LTKLPDLSLAQNLEILDLGYC 121
NL+ G + + NL LK + + + L +L + A +LE L L C
Sbjct: 90 NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK-ARADDLETLKLDKC 148
Query: 122 SSLTET--HSSIQYLNKLEVLDLDRC-------KSLTSLPTSIHSKYLKRLVLRGCSN-- 170
S T S + + K++ L ++ K L L S + + +
Sbjct: 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208
Query: 171 ---LKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKL 227
L+ + + +C ++ + I EL K +N+ E S + L
Sbjct: 209 PKDLETIAR--NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266
Query: 228 QFLESIR---------------IHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRP 272
F + ++ L++ ++ ++KCP
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL------IQKCPNL 320
Query: 273 ESLPSGQCMFKSLTSLEII--DCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLA 330
E L + + LE++ C +RL + + + + + GL LA
Sbjct: 321 EVLETRNVI--GDRGLEVLAQYCKQLKRL--RIERGADEQGMEDEEGLVSQ--RGLIALA 374
Query: 331 LLSKLELKNCSELEYISSSIFKL--KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388
+ C ELEY++ + + +S+ESI + NL F + + + +
Sbjct: 375 -------QGCQELEYMAVYVSDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDN 426
Query: 389 SVLKL-NKCSKLESLP-SSLCMFKSLTSLEII--DCKKLERL------------PDELGN 432
V L C KL + L I + + +
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486
Query: 433 LEALEELRVEGTGIREVPKSLAQLA-----LSKLKLKKCSSFESLPSRLYVSKSLTSLEI 487
L++L + G E +++A L L ++ + + + +++ ++E+
Sbjct: 487 CPNLQKLEMRGCCFSE--RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544
Query: 488 IDCKNFMRLPDE 499
I + + +
Sbjct: 545 IPSRRVPEVNQQ 556
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 45/394 (11%), Positives = 109/394 (27%), Gaps = 39/394 (9%)
Query: 179 SCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI--- 235
R + + + N+ L + R + + +
Sbjct: 48 DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107
Query: 236 -HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEII--D 292
+ L+ + + + L + E+L +C + L I
Sbjct: 108 SNNLRQLKSVHFRRMIVS-----DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162
Query: 293 CPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSEL--EYISSSI 350
C + L ++ + DG + EL + L +L+ + +++ + + +
Sbjct: 163 CRKIKTL-----LMEESSFSEKDGKWLHELAQHNTSLEVLN-FYMTEFAKISPKDLETIA 216
Query: 351 FKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFK 410
+S+ S+++ + L+ + +E L + + +
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAA----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272
Query: 411 SLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFE 470
L + ++ L + L+ L L L+ +
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332
Query: 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLE 530
L K L L I + + DE G + ++ + LE
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-----------AQGCQELE 381
Query: 531 WLVLSDNN-----LQIIPESLNQLSSLVSLKLSN 559
++ + ++ L+ I L L + L
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 3e-10
Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 20/197 (10%)
Query: 411 SLTSLEIIDCKKLERLPDELGNL--EALEELRVEGTGIREVPKSLAQL------ALSKLK 462
L L + + + P L L L + LA+L L L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 463 LKKCSSFESLPSRLYVSKSLTSLEI-------IDCKNFMRLPDEIGNLEYLKVLTIKGTA 515
+ + S ++ V +L++L++ P + L+ L +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 516 I-REVPESLGQLSSLEWLVLSDNNLQIIPESLNQ--LSSLVSLKLSNNNLERIPERLDPL 572
L+ L LS N+L+ + + S L SL LS L+++P+ L
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--P 273
Query: 573 SSLKYLDLFENNLDRIP 589
+ L LDL N LDR P
Sbjct: 274 AKLSVLDLSYNRLDRNP 290
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 38/280 (13%)
Query: 294 PNFERLPDELGNLQALNRLIIDGTAI--RELPEGLGQLAL--LSKLELKNCSELEYISSS 349
+ + D + +L L RL + I R L L L + L +L L+N
Sbjct: 56 ADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114
Query: 350 IFKL--KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPSSL 406
+ + + + + N S + + + + L+ + +
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLA------ELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466
+ +L +D L + L E + +L LAL ++
Sbjct: 169 --VRVFPALSTLD----------LSDNPELGERGLISALCPLKFPTLQVLALRNAGME-- 214
Query: 467 SSFESLPSRLYVSKSLTSLEIID--CKNFMRLPDEIG--NLEYLKVLTIKGTAIREVPES 522
+ + S L + + L+ +D + L L + T +++VP+
Sbjct: 215 -TPSGVCSAL--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271
Query: 523 LGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562
L L L LS N L P +L + +L L N
Sbjct: 272 LPA--KLSVLDLSYNRLDRNPSPD-ELPQVGNLSLKGNPF 308
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 9e-10
Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID----CKNFMRLPDEIGNLEYLKV 508
+A+ K ++ +S+ T E ++ ++ + L+ K
Sbjct: 1 MAKATTIKDAIRIFEERKSV--------VATEAEKVELHGMIPPIEKMDATLSTLKACKH 52
Query: 509 LTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568
L + I ++ SL + +L L L N ++ I +L L +S N + +
Sbjct: 53 LALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SG 110
Query: 569 LDPLSSLKYLDLFENNLDRIPE--YLRSFP 596
++ L +L+ L + N + E L +
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALD 140
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 500 IGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559
+ +E L++L++ I+++ +LE L +S N + + + +L +L L +SN
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN 124
Query: 560 NNLERIPE--RLDPLSSLKYLDLFENNLDRIPEYLRSFP 596
N + E +L L L+ L L N L + +
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 488 IDC--KNFMRLPDEIGNLEYLKVLTIKG-TAIREVP-ESLGQLSSLEWLVLSDNNLQII- 542
+ C + + E L L I+ ++ + L L L L + + L+ +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 543 PESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586
P++ + L L LS N LE + + SL+ L L N L
Sbjct: 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 18/109 (16%)
Query: 518 EVPESLGQLSSLEWLVLSDNN-LQIIP-ESLNQLSSLVSLKLSNNNLERIPER-LDPLSS 574
+ L +L L + + LQ + L L L +L + + L +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 575 LKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNEL 623
L L+L N L+ + L L L L N L
Sbjct: 82 LSRLNLSFNALESLS----------WKTVQGLSLQE-----LVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 535 SDNNLQIIPESLNQLSSLVSLKLSNNN-LERIPER-LDPLSSLKYLDLFENNLDRIPEYL 592
+ + L +L L + N L+ + R L L L+ L + ++ L +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-- 73
Query: 593 RSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEI 626
+F L L L N L +
Sbjct: 74 DAF-----HFTPRLSR-------LNLSFNALESL 95
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 77/469 (16%), Positives = 147/469 (31%), Gaps = 77/469 (16%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLA------QNLEILDLG 119
NLV G + + L+ I LK + D L +N ++L L
Sbjct: 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV----TDDCLELIAKSFKNFKVLVLS 138
Query: 120 YCSSLTET--HSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKM 177
C + + L+ LDL + +L ++L +L +
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDV-----DDVSGHWLSHF-PDTYTSLVSL-NI 191
Query: 178 TSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHR 237
+ + +E L + N+ L + LE +++ + + LE +
Sbjct: 192 SCLASEVS----FSALERL---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244
Query: 238 CPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCP--- 294
++ S + S + L P LP+ + LT+L +
Sbjct: 245 YTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303
Query: 295 -NFERLPDELGNLQALN--RLIIDGTAIRELPEGLGQLAL----LSKLELKNCSELEYIS 347
+ +L + LQ L I D GL LA L +L +
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIED--------AGLEVLASTCKDLRELRVFPSEPFVMEP 355
Query: 348 SSIFKLKSVESIEISNCSNLK---GFPEIPFCNIDGSGIERIPSSVLKLNK---CSKLES 401
+ + + S+ C L+ F + + + I + + + C
Sbjct: 356 NVALTEQGLVSV-SMGCPKLESVLYF----CRQMTNAALITIARNRPNMTRFRLCIIEPK 410
Query: 402 LPSSLCMFKSLTSLEII--DCKKLERL----------PDELG-NLEALEELRVEGTGIRE 448
P L + I CK L RL + +G + +E L V G +
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470
Query: 449 VPKSLAQLA-----LSKLKLKKCSSF-ESLPSRLYVSKSLTSLEIIDCK 491
+ + L KL+++ C ++L + +++ SL + C
Sbjct: 471 --LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 6e-08
Identities = 74/489 (15%), Positives = 156/489 (31%), Gaps = 71/489 (14%)
Query: 140 LDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGV------GI 193
+ + C +++ ++ + L+G + + + P + +
Sbjct: 48 VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107
Query: 194 EELPSSIKCLSNIG-ELLIYSCKRLENIS-SSIFKL--QFLESIRIHRCPNLQFLEMPSC 249
EE+ +++ EL+ S K + + SS L +I C NL+ L++
Sbjct: 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRES 166
Query: 250 NIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF--------------KSLTSLEIIDCPN 295
++D SL +L SL++
Sbjct: 167 DVDDVSGH---WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223
Query: 296 FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS 355
E+L L L L G P+ L++ L C EL +S + +
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSGCKELRCLSGFWDAVPA 279
Query: 356 VESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSL 415
S CS L + + + + ++ L +C KL+ L + + L
Sbjct: 280 YLPAVYSVCSRLTTL-NLSYATVQSYDLVKL------LCQCPKLQRL--WVLDYIEDAGL 330
Query: 416 EIID--CKKLERLP-DELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSF--E 470
E++ CK L L + + G+ V +L + L C
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL---ESVLYFCRQMTNA 387
Query: 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLE--------------YLKVLTIKGTAI 516
+L + ++++ ++ + LE L+ L++ G
Sbjct: 388 AL---ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444
Query: 517 REVPESLGQ-LSSLEWLVLSDNNL--QIIPESLNQLSSLVSLKLSNNNL--ERIPERLDP 571
+V E +G +E L ++ + L+ SL L++ + + +
Sbjct: 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504
Query: 572 LSSLKYLDL 580
L +++ L +
Sbjct: 505 LETMRSLWM 513
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 56/336 (16%), Positives = 96/336 (28%), Gaps = 62/336 (18%)
Query: 268 KCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLG 327
S + F + S+E+ P+F NL I +
Sbjct: 51 GNCYAVSPATVIRRFPKVRSVELKGKPHFADF-----NLVPDGWGGYVYPWIEAMSSSYT 105
Query: 328 QLALLSKLELKNC----SELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383
L ++ LK LE I+ S K+ + + +S+C G+
Sbjct: 106 W---LEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCE-----------GFSTDGL 148
Query: 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEG 443
I C L+ L ++ + +L L +
Sbjct: 149 AAI------AATCRNLKELDLRESDVDDVSGHWLSHFPD---------TYTSLVSLNISC 193
Query: 444 TGIREVPKSLAQLA-----LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMR--- 495
+L +L L LKL + E L + L + L L +R
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253
Query: 496 ---LPDEIGNLEYLKVLT-IKGTAIREVPESLGQLSSLEWLVLS-----DNNLQIIPESL 546
L + + L+ L+ +P S L L LS +L +
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313
Query: 547 NQLSSL-VSLKLSNNNLERIPERLDPLSSLKYLDLF 581
+L L V + + LE + L+ L +F
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLAST---CKDLRELRVF 346
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 502 NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNN 561
N + L ++G I + L + + SDN ++ + + L L +L ++NN
Sbjct: 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75
Query: 562 LERIPERLDP-LSSLKYLDLFENNLDRIPE--YLRSFP 596
+ RI E LD L L L L N+L + + L S
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 502 NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQ-LSSLVSLKLSNN 560
L+ + IR++ + L L+ L++++N + I E L+Q L L L L+NN
Sbjct: 40 TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98
Query: 561 NLERIPE--RLDPLSSLKYLDLFENNLDRIPEY 591
+L + + L L SL YL + N + Y
Sbjct: 99 SLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDL 580
L L + +I L ++ S+N + ++ + L LK L +
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71
Query: 581 FENNLDRIPEYLRSFPTSI 599
N + RI E L +
Sbjct: 72 NNNRICRIGEGLDQALPDL 90
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 480 KSLTSLEIIDCK-NFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNN 538
+ L + + + N +L E L+ L+ + + +L +L+ L+ L LSDN
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75
Query: 539 LQIIPESLNQ-LSSLVSLKLSNNNLERIPE--RLDPLSSLKYLDLFENNLDRIPEY 591
+ E L + +L L LS N ++ + L L +LK LDLF + + +Y
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 526 LSSLEWLVLSDNNLQI--IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFEN 583
S ++ LVL ++ + ++ L L N L I L L+ LK L+L +N
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74
Query: 584 NLDRIPEYLRSFPTSI 599
+ E L ++
Sbjct: 75 RVSGGLEVLAEKCPNL 90
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 481 SLTSLEIIDCKN-FMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL 539
++ L + +CK+ ++ L+ L++ + V +L +L L+ L LS+N +
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRI 83
Query: 540 QIIPESLNQ-LSSLVSLKLSNNNLERIPE--RLDPLSSLKYLDLFENNLDRIPEY 591
+ L + L +L L LS N L+ I L L LK LDLF + + +Y
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 508 VLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPE 567
VL + ++ + +LE+L L + L + +L +L L L+LS N + +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88
Query: 568 RL-DPLSSLKYLDLFENNLDRIPE--YLRSFP 596
L + L +L +L+L N L I L+
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 526 LSSLEWLVLSDNNLQI--IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFEN 583
+++ LVL + I + +L L L N L + L L LK L+L EN
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN 81
Query: 584 NLDRIPEYLRSFPTSI 599
+ + L ++
Sbjct: 82 RIFGGLDMLAEKLPNL 97
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFE 582
+L L L L N L I + S + L+L N ++ I ++ L LK L+L++
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 583 NNLDRIPE 590
N + +
Sbjct: 112 NQISCVMP 119
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
S ++ L L +N ++ I + L L +L L +N + + + L+SL L+L
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Query: 583 NNLD 586
N +
Sbjct: 136 NPFN 139
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFE 582
+L+ L L LS N +Q +P+ + ++L+ L L L N L+ +P + D L+ LK L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 583 NNLDRIPE 590
N L +P+
Sbjct: 110 NQLKSVPD 117
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
+L+ L L L +N LQ +P + ++L+ L L L N L+ +P+ D L+SL+ + L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Query: 583 N 583
N
Sbjct: 134 N 134
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 502 NLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSN 559
L L L + ++ + + L+ L L L++N L +P + + L+ L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 560 NNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N L+ +P + D L+ LK L L N L IP
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 444 TGIREVPKSLAQLALSKLKLKKCSS--FESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG 501
+GI P +L L L S F L +++ L+ + F L +
Sbjct: 31 SGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE--- 84
Query: 502 NLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSN 559
L L + + +P + L+ L+ L L N L+ +P + ++L+ L L+L+
Sbjct: 85 ----LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 560 NNLERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N L+ IP D L++L+ L L N L +P
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 437 EELRVEGTGIREVPKSLAQLALSKLKLKKCSS--FESLPSRLYVSKSLTSLEIIDCKN-- 492
E+L ++ TG+ + + L+KL ++L + V LT L + N
Sbjct: 38 EKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQ 94
Query: 493 FMRLPDEI-GNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPESL-NQL 549
LP + +L L L + G ++ +P + +L+ L+ L L+ N LQ IP ++L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 550 SSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586
++L +L LS N L+ +P D L L+ + LF N D
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 507 KVLTIKGTAIREVPESLGQ-LSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLER 564
+ L ++ T + + ++ + L+ L WL L N LQ + + + L+ L +L L+NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 565 IPERL-DPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNEL 623
+P + D L+ L L L N L +P F L L+ L+L+ N+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLP----------SGVFDRL---TKLKE-LRLNTNQL 143
Query: 624 SEI 626
I
Sbjct: 144 QSI 146
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 526 LSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFEN 583
L +L+ L L N L +P + + L+ L L L N L +P + D L LK L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 584 NLDRIPE 590
L +P
Sbjct: 123 KLTELPR 129
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFEN 583
L+ L L L N L ++P ++ ++L L L + N L +P ++ L+ L +L L +N
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145
Query: 584 NLDRIPE 590
L IP
Sbjct: 146 QLKSIPH 152
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 525 QLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFEN 583
+L L+ L + N L +P + +L+ L L L N L+ IP D LSSL + LF N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 507 KVLTIKGTAIREVPESLGQ-LSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLER 564
L ++ +++ +P + L+SL L L N LQ +P + N+L+SL L LS N L+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 565 IPERL-DPLSSLKYLDLFENNLDRIPE 590
+P + D L+ LK L L N L +P+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPD 117
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFE 582
+L+SL +L LS N LQ +P + ++L+ L L L+ N L+ +P+ + D L+ LK L L++
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 583 NNLDRIPE 590
N L +P+
Sbjct: 134 NQLKSVPD 141
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
+L+ L+ L L+ N LQ +P+ + ++L+ L L+L N L+ +P+ D L+SL+Y+ L +
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 583 NNLD 586
N D
Sbjct: 158 NPWD 161
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 20/193 (10%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTK--LPDLSLAQNLEILDLGYCSS 123
+++ + P S + Q + + ++ +DL S + LS L+ L L
Sbjct: 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130
Query: 124 LTETHSSIQYLNKLEVLDLDRCKSLT--SLPT-SIHSKYLKRLVLRGCSNL--------- 171
+++ + L L+L C + +L T L L L C +
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190
Query: 172 -KNLPKMTSCHLRSTLPLLG-VGIEELPSSIKCLSNIGELLIYSCKRLENIS-SSIFKLQ 228
+T +L L + L ++ N+ L + L+N F+L
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247
Query: 229 FLESIRIHRCPNL 241
+L+ + + RC ++
Sbjct: 248 YLQHLSLSRCYDI 260
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 84 VQNLVSLKRIDLKYSKLLTKLPDLSLAQ----NLEILDL-GYCSSLTETH--SSIQYLNK 136
+ + L ++L + T+ + L+L GY +L ++ + ++
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 137 LEVLDLDRCKSLT--SLPTSIHSKYLKRLVLRGCSN--------LKNLPKMTSCHLRSTL 186
L LDL L YL+ L L C + L +P + + + +
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283
Query: 187 PLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEM 246
P ++ L ++ L +C I+ + + I +C L+
Sbjct: 284 P--DGTLQLLKEALPHLQ-------INCSHFTTIARPTIGNKKNQEIWGIKC--RLTLQK 332
Query: 247 PSC 249
PSC
Sbjct: 333 PSC 335
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
+L+ L L L +N L ++P + ++L+ L L L++N L+ IP D L SL ++ L
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
Query: 583 N 583
N
Sbjct: 112 N 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 524 GQLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLF 581
G ++ + L L DN + + + ++L+ L L L NN L +P + D L+ L L L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 582 ENNLDRIPE 590
+N L IP
Sbjct: 87 DNQLKSIPR 95
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 527 SSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENN 584
+ + L L++N + + + + L +L L ++N L IP + D L+ L LDL +N+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 585 LDRIPE 590
L IP
Sbjct: 93 LKSIPR 98
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 525 QLSSLEWLVLSDNNLQIIPESL-NQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFE 582
L +L+ L + N L IP + ++L+ L L L++N+L+ IP D L SL ++ L+
Sbjct: 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 583 N 583
N
Sbjct: 115 N 115
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 86/320 (26%)
Query: 292 DCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCS----ELEYIS 347
+ E E ++ A+R L + L + L + L + + E +
Sbjct: 58 SKKDLEIA--EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115
Query: 348 SSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLC 407
+ K +E + + N + +I ++ +L K ++ P
Sbjct: 116 DFLSKHTPLEHLYLHNN------------GLGPQAGAKIARALQELAVNKKAKNAPP--- 160
Query: 408 MFKSLTSLEIIDCKKLERLPDE--------LGNLEALEELRVEGTGIREVPKSLAQLALS 459
L S+ RL + + L +++ GIR + L
Sbjct: 161 ----LRSIICGRN----RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLL 209
Query: 460 KLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV 519
+ L + L L++ D T +
Sbjct: 210 EG--------------LAYCQELKVLDLQDN-------------------TFTHLGSSAL 236
Query: 520 PESLGQLSSLEWLVLSDNNL-----QIIPESLNQLS--SLVSLKLSNNNLER-----IPE 567
+L +L L L+D L + ++ ++L L +L+L N +E +
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296
Query: 568 RL-DPLSSLKYLDLFENNLD 586
+ + + L +L+L N
Sbjct: 297 VIDEKMPDLLFLELNGNRFS 316
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 35/212 (16%)
Query: 394 NKCSKLESLPSSLCMFKSLTSLEIIDCKKLER---------LPDELGNLEALEELRVEGT 444
+ + + + F L D E+ L L + L L+++GT
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182
Query: 445 GIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK--SLTSLEIIDCKNFMRLPDEIGN 502
+ K + L L++ +S+ + S +L L + ++
Sbjct: 183 NNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241
Query: 503 LEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ-IIPESL---NQLSSLVSLKLS 558
L S + +L+WL + D Q ++ E + L L ++ +S
Sbjct: 242 FRPLF--------------SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 559 NNNL-----ERIPERLDPLSSLKYLDLFENNL 585
L + + +D + LK++++ N L
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 99/542 (18%), Positives = 189/542 (34%), Gaps = 149/542 (27%)
Query: 89 SLKRIDLKYSKL----LTKLPDLSLAQNLEILDLGYCSSLTETH-----SSIQYLNKLEV 139
++ +D++ +L +L L L Q +++ L C LTE S+++ L
Sbjct: 4 DIQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAE 60
Query: 140 LDLDRC-------KSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVG 192
L+L + + K +++L L+ C L G G
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCC------------------LTGAG 101
Query: 193 IEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNID 252
L S+++ L + EL + + + +L L + L+ L++ C++
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDN----LLGDAGLQL--LCEGLLDPQCRLEKLQLEYCSLS 155
Query: 253 GTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRL 312
S + + L + P+F+ L + N N +
Sbjct: 156 AA----------------------SCEPLASVLRA-----KPDFKEL--TVSN----NDI 182
Query: 313 IIDGTAIRELPEGLGQLAL-LSKLELKNCS----ELEYISSSIFKLKSVESIEISNCSNL 367
G +R L +GL L L+L++C + + S+ + + +
Sbjct: 183 NEAG--VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN--- 237
Query: 368 KGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP 427
+ G+ + +L + +L +L C + C L R+
Sbjct: 238 ---------KLGDVGMAELCPGLLHPSS--RLRTLWIWEC------GITAKGCGDLCRV- 279
Query: 428 DELGNLEALEEL-----RVEGTGIREVPKSLAQ--LALSKLKLKKCS----SFESLPSRL 476
L E+L+EL + G R + ++L + L L +K CS S L
Sbjct: 280 --LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337
Query: 477 YVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQ-LSSLEWLVLS 535
++ L L+I + + ++ +RE+ + LGQ S L L L+
Sbjct: 338 AQNRFLLELQISNNR-------------------LEDAGVRELCQGLGQPGSVLRVLWLA 378
Query: 536 DNNL-----QIIPESLNQLSSLVSLKLSNNNLE-----RIPERL-DPLSSLKYLDLFENN 584
D ++ + +L SL L LSNN L ++ E + P L+ L L++
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Query: 585 LD 586
Sbjct: 439 WS 440
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.98 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.93 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.9 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.89 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.89 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.88 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.88 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.88 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.88 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.88 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.86 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.85 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.83 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.82 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.81 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.8 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.79 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.78 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.78 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.77 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.76 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.75 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.73 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.72 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.72 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.72 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.71 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.67 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.67 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.63 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.63 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.62 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.6 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.6 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.59 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.59 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.58 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.56 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.56 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.53 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.47 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.47 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.45 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.44 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.42 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.4 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.4 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.35 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.32 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.31 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.25 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.24 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.23 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.2 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.19 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.18 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.14 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.04 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.04 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.01 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.94 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.85 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.72 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.43 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.39 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.28 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.08 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.97 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.94 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.91 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.85 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.83 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.54 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.32 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.12 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.9 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=512.33 Aligned_cols=559 Identities=18% Similarity=0.214 Sum_probs=372.0
Q ss_pred HHHhcccccceeeeecCCCccccccCC--CCCC-CceEEEEecCCCCc-cccc---ccccCceEEEcCCCCcccc-ccc-
Q 003936 13 YTFSKMTELRLLKFCGSKNKCMVHSLE--GVPF-TELRYFEWHQFPLK-TLNI---LHWENLVSLKMPGSKVTQL-WDD- 83 (785)
Q Consensus 13 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~--~~~~-~~L~~L~l~~~~l~-~lp~---~~l~~L~~L~L~~~~i~~l-~~~- 83 (785)
..|.++++||+|++++|.+.+ .+|. .+.. ++|++|++++|.+. .+|. ..+++|++|++++|.++.. +..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEE--EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred hhhccCCCCCEEECCCCcCCC--cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 456777777777777777642 2444 5555 77788888777765 3333 4677788888888877744 333
Q ss_pred --ccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccc
Q 003936 84 --VQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL 160 (785)
Q Consensus 84 --~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L 160 (785)
+.++++|++|++++|.+....+ +..+++|++|++++|.+.+.+|. ++++++|++|++++|...+.+|..+ .+++|
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 6777888888888887654443 47788888888888887776666 8888888888888887777777777 78888
Q ss_pred cEEeccCCcCCCCCCCcccccccccccccccccc-ccCcchhcc-ccccceeccccccccccchhhhcccccccccccCC
Q 003936 161 KRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE-ELPSSIKCL-SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 161 ~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~-~lp~~l~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (785)
++|++++|...+.+|.....+|+ +|++++|.+. .+|..+... ++|++|++++|.+.+.+|..++.+++|+.|+++++
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~-~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQ-YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCC-EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCccCccccCCCC-EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 88888888766677766557788 8888888886 788887764 88889999888888888888888888888877653
Q ss_pred --------------CCCccccCCCcccCCCCCccC-----CcccccccCCCCCCCCCCCccC--CCCCcEEecccCCCCC
Q 003936 239 --------------PNLQFLEMPSCNIDGTRSKEQ-----PSSELKLKKCPRPESLPSGQCM--FKSLTSLEIIDCPNFE 297 (785)
Q Consensus 239 --------------~~L~~L~l~~n~~~~~~~~~~-----~~~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~ 297 (785)
++|++|++++|.+++.....+ ....+++++|...+.+|..+.. +++|+.|++.+|...+
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 456666666666653322211 2233555566555555555444 5566666666665555
Q ss_pred CCCccccCccccceeeccCcccc-cCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCC-------C
Q 003936 298 RLPDELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLK-------G 369 (785)
Q Consensus 298 ~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-------~ 369 (785)
.+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.... .
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 56666666666666666666665 455556666666666666666666666666666666666666654221 1
Q ss_pred CCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-c
Q 003936 370 FPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-E 448 (785)
Q Consensus 370 lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~ 448 (785)
++.|+.+++++|.+. +.+|.+++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.++ .
T Consensus 489 l~~L~~L~L~~N~l~---------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 489 CTNLNWISLSNNRLT---------------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CTTCCEEECCSSCCC---------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCEEEccCCccC---------------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 223333333333222 234444555555555555555555555555555555555555555554 4
Q ss_pred cChhhhhhh-hcccccccCC----------------------CCccCCccccCCCCCCEEEeeCCcCcccCCCccccccc
Q 003936 449 VPKSLAQLA-LSKLKLKKCS----------------------SFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505 (785)
Q Consensus 449 lp~~~~~l~-L~~L~l~~~~----------------------~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 505 (785)
+|..+.... +..+.+.... ..+..+..+..++.++.+++..+...+.+|..++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 554443321 1111111100 01111222223334444455556666777888888999
Q ss_pred cceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCC
Q 003936 506 LKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFE 582 (785)
Q Consensus 506 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~ 582 (785)
|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +|..++.+++|+.|+|++|++++ +|..+..+++|++|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999998 679999999999999999999984 89999999999999999999985 799999999999999999
Q ss_pred CCCC-CCccc
Q 003936 583 NNLD-RIPEY 591 (785)
Q Consensus 583 n~l~-~lp~~ 591 (785)
|+++ .+|+.
T Consensus 714 N~l~g~iP~~ 723 (768)
T 3rgz_A 714 NNLSGPIPEM 723 (768)
T ss_dssp SEEEEECCSS
T ss_pred CcccccCCCc
Confidence 9964 66653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-53 Score=498.93 Aligned_cols=532 Identities=22% Similarity=0.247 Sum_probs=290.8
Q ss_pred ceEEEEecCCCCcc----ccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC---CCccccccce
Q 003936 45 ELRYFEWHQFPLKT----LNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP---DLSLAQNLEI 115 (785)
Q Consensus 45 ~L~~L~l~~~~l~~----lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~L~~ 115 (785)
+++.|+++++.+.. +|. ..+++|+.++++.+.+..+|.+++.+++|++|+|++|.+...+| .++.+++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCE
Confidence 44455555544432 333 44445555555554444444445555555555555554433332 2444455555
Q ss_pred eccccccCcccccccc-ccCCcccEEecCCCCCCCcCCCc---c-ccccccEEeccCCcCCCCCCCcccccccccccccc
Q 003936 116 LDLGYCSSLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTS---I-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLG 190 (785)
Q Consensus 116 L~Ls~n~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~p~~---~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~ 190 (785)
|+|++|.+.+..|..+ .++++|++|++++|...+..|.. + ++++|++|++++|......|.....+|+ +|++++
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~-~L~Ls~ 209 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE-FLDVSS 209 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC-EEECCS
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC-EEECcC
Confidence 5555554444444333 44455555555554433333332 2 4444555555554433333322223444 555555
Q ss_pred ccccccCcchhccccccceeccccccccccchhhhcccccccccccCC-----------CCCccccCCCcccCCCCCccC
Q 003936 191 VGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC-----------PNLQFLEMPSCNIDGTRSKEQ 259 (785)
Q Consensus 191 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l~~n~~~~~~~~~~ 259 (785)
|.+...+..++++++|++|++++|.+.+..|..+..+++|+.|++++| ++|++|++++|.+++.....+
T Consensus 210 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp SCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred CcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 554433333555555555555555555555555555555555544443 344445555554443222111
Q ss_pred -----CcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCcc-ccCccccceeeccCcccc-cCCccccCcc-c
Q 003936 260 -----PSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDE-LGNLQALNRLIIDGTAIR-ELPEGLGQLA-L 331 (785)
Q Consensus 260 -----~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~ 331 (785)
....+++++|...+.+|..++.+++|++|++.+|...+.+|.. +..+++|++|++++|.++ .+|..+..++ +
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 1122444444444444444444455555555444444344433 444455555555554444 4444444443 4
Q ss_pred cceecccCccCCccccccccC--CCCCCEEEeeCCC-------CCCCCCCCceeccCCCCCcccCccccccCCCCCCccC
Q 003936 332 LSKLELKNCSELEYISSSIFK--LKSVESIEISNCS-------NLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL 402 (785)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~-------~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l 402 (785)
|++|++++|.+.+.+|..+.. +++|+.|++++|. .+..++.|+.+++++|.+. +.+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---------------~~~ 434 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS---------------GTI 434 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---------------SCC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---------------Ccc
Confidence 555555554444444444433 4444555544443 1222334444444444433 344
Q ss_pred CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhh-hcccccccCCCCccCCccccCCC
Q 003936 403 PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSK 480 (785)
Q Consensus 403 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~ 480 (785)
|..++.+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+. |+.|++++|...+.+|..+..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 555666666666666666666666666666666666666666666 4555555544 66666666666666666666666
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccC---------------------------------------
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVP--------------------------------------- 520 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp--------------------------------------- 520 (785)
+|++|++++|++.+.+|..++.+++|+.|++++|.++ .+|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 6666666666666666666666666666666666554 333
Q ss_pred -------------------------------cccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCC
Q 003936 521 -------------------------------ESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPE 567 (785)
Q Consensus 521 -------------------------------~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~ 567 (785)
..++.+++|+.|||++|++++ +|..++.+++|+.|+|++|++++ +|+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 345557889999999999985 88999999999999999999985 899
Q ss_pred cCcCCCCCCEEeCCCCCCC-CCcccc
Q 003936 568 RLDPLSSLKYLDLFENNLD-RIPEYL 592 (785)
Q Consensus 568 ~l~~l~~L~~L~l~~n~l~-~lp~~~ 592 (785)
.++.+++|++||+++|+++ .+|+.+
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred HHhCCCCCCEEECCCCcccCcCChHH
Confidence 9999999999999999976 666553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=448.72 Aligned_cols=542 Identities=18% Similarity=0.194 Sum_probs=410.7
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
+.++.+++++ ..+|..+. +++++|++++|.++.++. ..+++|++|++++|.++.+ |..+.++++|++|+|++
T Consensus 7 ~~~~cs~~~L---~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKL---TQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCC---SSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCc---cccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 4577777766 56776654 789999999999988876 7788999999999998876 55688899999999999
Q ss_pred CccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp 175 (785)
|.+....+ .|..+++|++|++++|.+.+..|..|+++++|++|++++|...+..|..+ ++++|++|++++|......+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 97665444 48899999999999998766666788999999999999987766666666 78899999998874322222
Q ss_pred Ccc----ccccccccccccccccccC-cchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcc
Q 003936 176 KMT----SCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCN 250 (785)
Q Consensus 176 ~~~----~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~ 250 (785)
... ..+|+ .+++++|.+..++ ..+..+++|+.|++.++.+.......+... -..++|+.+++++|.
T Consensus 163 ~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--------l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 163 EELDIFANSSLK-KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--------LANTSIRNLSLSNSQ 233 (680)
T ss_dssp HHHGGGTTCEES-EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--------HTTSCCCEEECTTSC
T ss_pred HHhhcccccccc-EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--------hhhccccEEEccCCc
Confidence 211 13455 6666666665443 345556666666666555443222111100 012456666677776
Q ss_pred cCCCCCccCC------cccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc----
Q 003936 251 IDGTRSKEQP------SSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR---- 320 (785)
Q Consensus 251 ~~~~~~~~~~------~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~---- 320 (785)
+.+.....+. ...+++++|...+..+..++.+++|+.|++.+|...+..|..+.++++|++|+++++...
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 6554333221 344777888777777777888899999999988877777888889999999999876443
Q ss_pred --cCCc----cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCC-CCCC----------CCCceeccCCCCC
Q 003936 321 --ELPE----GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSN-LKGF----------PEIPFCNIDGSGI 383 (785)
Q Consensus 321 --~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l----------p~l~~l~l~~~~i 383 (785)
.+|. .++.+++|++|++++|.+.+..+..+.++++|+.|++++|.. +..+ +.++.+++++|.+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 3443 577888999999999988888888888899999999988751 2111 3566666666655
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCccccccCh-hhhhhh-hcc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGTGIREVPK-SLAQLA-LSK 460 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~ 460 (785)
..+ .|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.++.++. .+..+. ++.
T Consensus 394 ~~~---------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 394 SKI---------------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp CEE---------------CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CeE---------------ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 433 34567788999999999999887766 678999999999999999886653 444443 899
Q ss_pred cccccCCCC--ccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc---------ccCCCCCC
Q 003936 461 LKLKKCSSF--ESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE---------SLGQLSSL 529 (785)
Q Consensus 461 L~l~~~~~~--~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---------~~~~l~~L 529 (785)
|++.+|... +.+|..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.++.++. .+.++++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 999988754 6788899999999999999999988888889999999999999999987632 37889999
Q ss_pred cEEEccCCccccccc-cccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccc
Q 003936 530 EWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 530 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++|+|++|+++.+|. .|.++++|+.|++++|+++.+|.. +..+++|+.|++++|+++.+|+.
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 999999999999986 589999999999999999998765 57899999999999999888753
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=432.63 Aligned_cols=522 Identities=17% Similarity=0.163 Sum_probs=372.3
Q ss_pred cceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecC
Q 003936 21 LRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLK 96 (785)
Q Consensus 21 Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls 96 (785)
.++++.+++.+ ..+|.++. +++++|++++|.++.++. ..+++|++|++++|.++.+ |..|.++++|++|+|+
T Consensus 13 ~~~~~c~~~~l---~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKL---SKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCC---SSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCc---ccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 35678888777 67787665 789999999999998876 7899999999999999987 5568999999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~ 173 (785)
+|.+....| .++.+++|++|++++|.+.+..+..++++++|++|++++|...+ .+|..+ ++++|++|++++|.....
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999877767 59999999999999998777666889999999999999987665 678888 899999999999854443
Q ss_pred CCCccc--cc----cccccccccccccccCcchhccccccceeccccccc-cccchhhhcccccccccccCC--CCCccc
Q 003936 174 LPKMTS--CH----LRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL-ENISSSIFKLQFLESIRIHRC--PNLQFL 244 (785)
Q Consensus 174 lp~~~~--~~----L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~L~~L 244 (785)
.|.... .+ +. .+++++|.++.++.......+|+.|++++|... ...+..+.+++.|+.+++... .....+
T Consensus 169 ~~~~~~~l~~L~~~l~-~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCC-EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred Chhhhhhhhccccccc-eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 343332 22 33 799999999999988777779999999999876 456677788888777665421 111100
Q ss_pred cCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-CCCccccCccccceeeccCcccccCC
Q 003936 245 EMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIRELP 323 (785)
Q Consensus 245 ~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~lp 323 (785)
.. . ....+.....+ .++.+.+..+..+. .+|. +..+++|+.|+++++.+..+|
T Consensus 248 ~~-------~-----------------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 248 EI-------F-----------------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp SC-------C-----------------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC
T ss_pred cc-------c-----------------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh
Confidence 00 0 00001111111 35555554444443 3444 777888888888888888877
Q ss_pred ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC
Q 003936 324 EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP 403 (785)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~ 403 (785)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|......
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--------------------------------- 344 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--------------------------------- 344 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---------------------------------
T ss_pred -hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---------------------------------
Confidence 677888888888888877 6777 34 7888888888887522211
Q ss_pred ccccCCCCCcEEEeccccCCCc--CCcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-ccccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLER--LPDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SRLYVS 479 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~~~~~ 479 (785)
.+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.++.+|..+..+. |+.|++++|...+..| ..+..+
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 223445555555555554433 24445555555555555555555554444433 5555555555544444 455566
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc--cCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+..|..+.++++|+.|++++|.++. +|..++.+++|++|++++|+++++ |..++.+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 888888888888888888888888888888888888875 577788888888888888888774 46688888888888
Q ss_pred cccCCCCCC-CCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeeccc
Q 003936 557 LSNNNLERI-PERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 557 L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
+++|+++++ |..+..+++|++|++++|+++.+|+.+..+ |.+|+.++++-+...|
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l----~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF----PKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS----CTTCCEEECCSCCCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh----cccCcEEEccCCCccc
Confidence 888888875 777888888888888888888887654332 5567764443333333
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=428.26 Aligned_cols=537 Identities=16% Similarity=0.167 Sum_probs=415.6
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-cccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 92 (785)
+++++|++++|.+ ..++. .+.. ++|++|++++|.+..++. ..+++|++|++++|.++.+|. .|..+++|++
T Consensus 25 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQL---RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCC---CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCC---CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 6899999999988 44554 3444 899999999999998755 789999999999999999987 4999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCC
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGC 168 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~ 168 (785)
|+|++|.+....| .++.+++|++|++++|.+.+..|..++.+++|++|++++|...+..+..+ .+++|++|++++|
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999998766655 58999999999999999888888889999999999999976555444433 4689999999998
Q ss_pred cCCCCCCCccc--cccccccccccccccc-----cCcchhccccccceeccccccccccchhhhcccc--cccccccCCC
Q 003936 169 SNLKNLPKMTS--CHLRSTLPLLGVGIEE-----LPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF--LESIRIHRCP 239 (785)
Q Consensus 169 ~~l~~lp~~~~--~~L~~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 239 (785)
......|.... .+++ .+.+.++.+.. ++..+ ..++|+.|++++|.+.+..+..+..++. |+.|++++
T Consensus 182 ~l~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~-- 257 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY-- 257 (680)
T ss_dssp CCCCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT--
T ss_pred cccccChhhhhhhhhhh-hhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCC--
Confidence 54444443332 4566 77777776542 11111 3488999999999998888887777654 66665554
Q ss_pred CCccccCCCcccCCCCCcc----CCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-----CCCc----cccCc
Q 003936 240 NLQFLEMPSCNIDGTRSKE----QPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-----RLPD----ELGNL 306 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~----~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~lp~----~l~~l 306 (785)
|.+.+..... .....+++++|...+..|..+..+++|+.|++.++.... .+|. .+..+
T Consensus 258 ---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 258 ---------NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp ---------SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred ---------CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4443322111 122346777777777777778888888888888654322 3443 57788
Q ss_pred cccceeeccCcccccCCc-cccCccccceecccCccCCc-cccc-cccC--CCCCCEEEeeCCC-------CCCCCCCCc
Q 003936 307 QALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELE-YISS-SIFK--LKSVESIEISNCS-------NLKGFPEIP 374 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~-~~~~--l~~L~~L~l~~~~-------~l~~lp~l~ 374 (785)
++|++|++++|.++.++. .+..+++|++|++++|.... .++. .+.. .++|+.|++++|. .+..+++++
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 888888888888886654 47888888888888876432 2222 2222 3578888888875 344566777
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc---ccC
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR---EVP 450 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~---~lp 450 (785)
.+++++|.+.. .+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|
T Consensus 409 ~L~L~~N~l~~---------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 409 VLDLGLNEIGQ---------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp EEECCSSCCEE---------------ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred EEeCCCCcCcc---------------ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 88888876642 122 35678889999999999888888888899999999999999875 467
Q ss_pred hhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC--------CccccccccceEEecCeeccccCc
Q 003936 451 KSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP--------DEIGNLEYLKVLTIKGTAIREVPE 521 (785)
Q Consensus 451 ~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~lp~ 521 (785)
..+..+. |+.|++++|...+..+..+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.++.+|.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 7776665 8999999988777667778889999999999999876422 247889999999999999999975
Q ss_pred -ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCc-Cc-CCCCCCEEeCCCCCCC
Q 003936 522 -SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPER-LD-PLSSLKYLDLFENNLD 586 (785)
Q Consensus 522 -~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l~-~l~~L~~L~l~~n~l~ 586 (785)
.|.++++|++|+|++|+++.+|.. +..+++|+.|++++|+++.++.. +. .+++|+.|++++|++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 589999999999999999998865 78999999999999999998654 44 6899999999999865
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=424.86 Aligned_cols=498 Identities=19% Similarity=0.167 Sum_probs=302.5
Q ss_pred eeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCC
Q 003936 23 LLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYS 98 (785)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n 98 (785)
.++.++..+ ..+|..+. ..+++|++++|.++.++. ..+++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 16 ~~~c~~~~l---~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGL---NEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCC---SSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCc---ccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 445444444 45555444 456777777777766643 6667777777777776655 455677777777777777
Q ss_pred ccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCccccccccEEeccCCcCCCCCCC
Q 003936 99 KLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSIHSKYLKRLVLRGCSNLKNLPK 176 (785)
Q Consensus 99 ~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~~l~~L~~L~ls~~~~l~~lp~ 176 (785)
.+....| .++.+++|++|++++|.+.+..+..++.+++|++|++++|...+ ..|....+++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------- 164 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA------- 164 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-------
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-------
Confidence 6655555 46677777777777776555545666777777777777755444 23444466667777766653
Q ss_pred cccccccccccccccccccc-Ccchhcccccc--ceeccccccccccchhhhcccccccccccCCCCCccc--cCCCccc
Q 003936 177 MTSCHLRSTLPLLGVGIEEL-PSSIKCLSNIG--ELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFL--EMPSCNI 251 (785)
Q Consensus 177 ~~~~~L~~~L~l~~~~i~~l-p~~l~~l~~L~--~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L--~l~~n~~ 251 (785)
+..+ |..++.+++|+ .|++++|.+.+..+..+.. ..|+.|+++++..+... .+....+
T Consensus 165 ----------------l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l 227 (606)
T 3t6q_A 165 ----------------IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTI 227 (606)
T ss_dssp ----------------CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEE
T ss_pred ----------------ccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccch
Confidence 3333 22344455555 4555555544444333322 34444444443211100 0000000
Q ss_pred CCCCCccCCcccccccCC---CCCCCCCCCccCCC--CCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccc
Q 003936 252 DGTRSKEQPSSELKLKKC---PRPESLPSGQCMFK--SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGL 326 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~---~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l 326 (785)
..+.+... .....-+..+..+. +|+.|++.++...+..+..+..+++|++|++++|.++.+|..+
T Consensus 228 ----------~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l 297 (606)
T 3t6q_A 228 ----------QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL 297 (606)
T ss_dssp ----------EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC
T ss_pred ----------hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh
Confidence 00000000 00000011111122 6778888887665555666888888888888888888888888
Q ss_pred cCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc
Q 003936 327 GQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL 406 (785)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~ 406 (785)
+.+++|++|++++|.+.+..|..+..+++|+.|++++|.....++ +..+
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------------------~~~~ 346 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-------------------------------TGCL 346 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC-------------------------------SSTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc-------------------------------hhhh
Confidence 888888888888888887777788888888888888875221110 1123
Q ss_pred cCCCCCcEEEeccccCCCcC--CcccCCcccchhhhccCcccccc-Chhhhhhh-hcccccccCCCCccCCc-cccCCCC
Q 003936 407 CMFKSLTSLEIIDCKKLERL--PDELGNLEALEELRVEGTGIREV-PKSLAQLA-LSKLKLKKCSSFESLPS-RLYVSKS 481 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~-L~~L~l~~~~~~~~lp~-~~~~~~~ 481 (785)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.+ |..+..+. |+.|++++|...+..|. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 34455555555555444332 44444555555555555554433 22333322 55555555544443332 3555688
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeeccc--c--CcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEE
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--V--PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLK 556 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--l--p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 556 (785)
|++|++++|.+.+..|..++.+++|++|++++|.++. + +..+..+++|++|++++|+++++ |..++.+++|+.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 8888888888887778888888888888888888774 2 24577888888888888888875 56788888888888
Q ss_pred cccCCCCC-CCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 557 LSNNNLER-IPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 557 L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+++|+++. .|..+..+++| +|++++|+++.+|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 88888876 46778888888 88888888776653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=414.34 Aligned_cols=503 Identities=16% Similarity=0.152 Sum_probs=391.3
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~ 92 (785)
++|++|++++|.+ ..++. .+.. ++|++|++++|.++.++. ..+++|++|++++|.++.+ |..++++++|++
T Consensus 32 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPL---KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCc---CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 6899999999998 44554 5555 999999999999998855 7899999999999999988 778999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-cccccc----EEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLK----RLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~----~L~l 165 (785)
|+|++|.+....+ .++.+++|++|++++|.+.+ .+|..++++++|++|++++|......|..+ .+.+|+ +|++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999998766664 69999999999999998765 679999999999999999987766666666 566654 8999
Q ss_pred cCCcCCCCCCCccc--ccccccccccccccc--ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCC
Q 003936 166 RGCSNLKNLPKMTS--CHLRSTLPLLGVGIE--ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNL 241 (785)
Q Consensus 166 s~~~~l~~lp~~~~--~~L~~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L 241 (785)
++|. ++.++.... .+|+ .+++++|.+. .+|.++++++.|+.+.+......... .+..+.-.....+
T Consensus 189 ~~n~-l~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~~~~~~~~l 258 (606)
T 3vq2_A 189 SLNP-IDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIFEPSIMEGL 258 (606)
T ss_dssp TTCC-CCEECTTTTTTCEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCCCGGGGTTG
T ss_pred cCCC-cceeCcccccCceee-eeeccCCccchhHHHHHhccccccccccccccccccCC--------cccccChHHhhhh
Confidence 9985 444544333 4788 9999999884 67888999999999888655433211 1111111111111
Q ss_pred ccccCCCcccCCCCCccCCcccccc-cCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc
Q 003936 242 QFLEMPSCNIDGTRSKEQPSSELKL-KKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR 320 (785)
Q Consensus 242 ~~L~l~~n~~~~~~~~~~~~~~L~l-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 320 (785)
..+.+. .+.+ ..+...+..|. +..+++|+.|++.++.. ..+| .+..+++|++|++++|.+.
T Consensus 259 ~~l~l~---------------~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 259 CDVTID---------------EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp GGSEEE---------------EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCS
T ss_pred hhccHh---------------heeccccccccccccc-cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccCc
Confidence 111110 0111 11222233344 56688999999988875 5566 7888999999999999998
Q ss_pred cCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCc
Q 003936 321 ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLE 400 (785)
Q Consensus 321 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~ 400 (785)
.+|. + .+++|++|++++|...+.. .+..+++|+.|++++|.. + ...
T Consensus 321 ~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~-----------------------------~~~ 366 (606)
T 3vq2_A 321 QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL-S-----------------------------FSG 366 (606)
T ss_dssp SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE-E-----------------------------EEE
T ss_pred cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc-C-----------------------------CCc
Confidence 8884 5 8899999999998766654 566888899999888741 0 011
Q ss_pred cCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhhh-hcccccccCCCCccCCcccc
Q 003936 401 SLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQLA-LSKLKLKKCSSFESLPSRLY 477 (785)
Q Consensus 401 ~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~-L~~L~l~~~~~~~~lp~~~~ 477 (785)
.+|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..++. .+..+. |+.|++++|...+..|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 124566777888888888887443 55777788888888888888876543 444443 88888888887777888888
Q ss_pred CCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccc-cccccCCCCCCE
Q 003936 478 VSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVS 554 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 554 (785)
.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|+++++ |..+..+++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 88999999999999988 4788999999999999999999977 67799999999999999999985 788999999999
Q ss_pred EEcccCCCCCCCCcCcCCC-CCCEEeCCCCCCCC
Q 003936 555 LKLSNNNLERIPERLDPLS-SLKYLDLFENNLDR 587 (785)
Q Consensus 555 L~L~~n~l~~lp~~l~~l~-~L~~L~l~~n~l~~ 587 (785)
|++++|+++.+|..+..++ +|++|++++|++..
T Consensus 526 L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 9999999999999998887 59999999999764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=407.55 Aligned_cols=475 Identities=18% Similarity=0.155 Sum_probs=368.6
Q ss_pred eEEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccC
Q 003936 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~ 123 (785)
-+.++.++..++.+|..-.+++++|++++|.++.+ |..|.++++|++|+|++|.+....| .|..+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 35788899999999985566899999999999988 5679999999999999999877767 589999999999999998
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
.+..|..++.+++|++|++++|......|..+ ++++|++|++++|... .++ .| .+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~--------------------~~-~~~~ 151 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIK--------------------LP-KGFP 151 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCC--------------------CC-TTCC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccC--------------------cc-cccC
Confidence 88889999999999999999976555445556 7889999999887422 111 12 2334
Q ss_pred cccccceeccccccccccchhhhcccccc--cccccCCCCCccccCCCcccCCCCCccCC---cccccccCCCCCCCCCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLE--SIRIHRCPNLQFLEMPSCNIDGTRSKEQP---SSELKLKKCPRPESLPS 277 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~~L~l~~~~~~~~~~~ 277 (785)
+++|++|++++|.+.+..+..++.+++|+ .|++++ |.+.+.....+. ...+++++|. .++.
T Consensus 152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-----------n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~ 217 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-----------NDIAGIEPGAFDSAVFQSLNFGGTQ---NLLV 217 (606)
T ss_dssp CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-----------CCCCEECTTTTTTCEEEEEECTTCS---CHHH
T ss_pred CcccCEEEcccCcccccChhhhhhhcccceeEEecCC-----------CccCccChhHhhhccccccccCCch---hHHH
Confidence 88999999999999988888888888777 444444 444332222211 1123444433 1111
Q ss_pred CccCCCC--CcEEecccCCCCC--CC-CccccCcc--ccceeeccCcccccCCcc-ccCccccceecccCccCCcccccc
Q 003936 278 GQCMFKS--LTSLEIIDCPNFE--RL-PDELGNLQ--ALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 278 ~~~~l~~--L~~L~l~~~~~~~--~l-p~~l~~l~--~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
.+..+.+ ++.+.+..+.... .+ +..+..+. +|+.|++++|.++.++.. ++.+++|++|++++|.+. .+|..
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~ 296 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh
Confidence 1122222 2222222222221 11 22333333 789999999999987765 888999999999998755 77888
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc-
Q 003936 350 IFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD- 428 (785)
Q Consensus 350 ~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~- 428 (785)
+..+++|++|++++|. .....|..+..+++|+.|++++|.+.+.+|.
T Consensus 297 l~~l~~L~~L~l~~n~--------------------------------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANK--------------------------------FENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CCSCTTCCEEECTTCC--------------------------------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred hcccccCCEEECccCC--------------------------------cCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 8889999999998875 1112345678899999999999998877765
Q ss_pred ccCCcccchhhhccCcccccc---Chhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccc
Q 003936 429 ELGNLEALEELRVEGTGIREV---PKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNL 503 (785)
Q Consensus 429 ~~~~l~~L~~L~L~~n~i~~l---p~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l 503 (785)
.+..+++|++|++++|.++.+ +..+..+. |+.|++++|...+..|..+..+++|++|++++|.+.+..+. .+..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 489999999999999999866 55566654 99999999998888899999999999999999999887654 48999
Q ss_pred cccceEEecCeecccc-CcccCCCCCCcEEEccCCcccc--cc--ccccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCE
Q 003936 504 EYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQI--IP--ESLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKY 577 (785)
Q Consensus 504 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~ 577 (785)
++|+.|++++|.++.. |..+..+++|++|++++|.+++ +| ..+..+++|+.|++++|+++++ |..+..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999999876 6778999999999999999986 33 5689999999999999999986 788999999999
Q ss_pred EeCCCCCCCCCc
Q 003936 578 LDLFENNLDRIP 589 (785)
Q Consensus 578 L~l~~n~l~~lp 589 (785)
|++++|+++.++
T Consensus 505 L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 505 VDLSHNRLTSSS 516 (606)
T ss_dssp EECCSSCCCGGG
T ss_pred EECCCCccCcCC
Confidence 999999987554
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=402.35 Aligned_cols=512 Identities=15% Similarity=0.102 Sum_probs=298.1
Q ss_pred eeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCC-cccc-cccccCCCCCcEEecCC
Q 003936 23 LLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSK-VTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~-i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
..+.+++++ ..+|. ..++|++|++++|.++.++. ..+++|++|++++|. +..+ |..|.++++|++|+|++
T Consensus 8 ~~dcs~~~L---~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNL---TQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCS---SCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCC---CCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 344455444 44555 12567777777777765543 666777777777763 3344 45567777777777777
Q ss_pred CccccCCC-CCccccccceeccccccCccccccc--cccCCcccEEecCCCCCCCcCC-Ccc-ccccccEEeccCCcCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSS--IQYLNKLEVLDLDRCKSLTSLP-TSI-HSKYLKRLVLRGCSNLK 172 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~p-~~~-~l~~L~~L~ls~~~~l~ 172 (785)
|.+....| .+..+++|++|+|++|.+.+.+|.. ++++++|++|++++|...+..+ ..+ ++++|++|++++|....
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 76655555 4667777777777777655545444 6677777777777765544433 234 66777777777664333
Q ss_pred CCCCccc----cccccccccccccccc-cCcchhcccc------ccceeccccccccccchhhhcc---cccccccccCC
Q 003936 173 NLPKMTS----CHLRSTLPLLGVGIEE-LPSSIKCLSN------IGELLIYSCKRLENISSSIFKL---QFLESIRIHRC 238 (785)
Q Consensus 173 ~lp~~~~----~~L~~~L~l~~~~i~~-lp~~l~~l~~------L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~ 238 (785)
..+.... .+|+ .+++++|.+.. .|..++.+.+ |+.|++++|.+....+..+... ..++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLS-FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSC-CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccc-eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 3333222 3455 66666666542 3344444433 7788888877766665554432 33444444321
Q ss_pred CCCccccCCCcccCCCCCcc------CCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCcccccee
Q 003936 239 PNLQFLEMPSCNIDGTRSKE------QPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRL 312 (785)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~------~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 312 (785)
........+.+.+..... .....+++++|...+..+..+..+++|+.|++.+|...+..|..|..+++|++|
T Consensus 242 --~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 242 --IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp --CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred --cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 011111112221111110 112224555555555555555666666666666666555555566666666666
Q ss_pred eccCcccccC-CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcccc
Q 003936 313 IIDGTAIREL-PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVL 391 (785)
Q Consensus 313 ~L~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l 391 (785)
++++|.++.+ |..++.+++|++|++++|.+....+..+..+++|+.|++++|. +..+
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----------------l~~i----- 377 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-----------------LTTI----- 377 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-----------------SCCC-----
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-----------------CCcc-----
Confidence 6666666644 4456666666666666666555555556666666666666664 2211
Q ss_pred ccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhh--hhh-hhcccccccCCC
Q 003936 392 KLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSL--AQL-ALSKLKLKKCSS 468 (785)
Q Consensus 392 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~--~~l-~L~~L~l~~~~~ 468 (785)
..+++|+.|++++|.+. .+|.. ..+++.|++++|.++.++... ..+ .|+.|++++|..
T Consensus 378 ---------------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 378 ---------------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ---------------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ---------------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 12455666666666544 33332 344555666666665544321 122 245555555544
Q ss_pred CccCCc-cccCCCCCCEEEeeCCcCc-----ccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccc
Q 003936 469 FESLPS-RLYVSKSLTSLEIIDCKNF-----MRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 469 ~~~lp~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~ 541 (785)
.+..+. .+..+++|+.|++++|.+. +..+..+.++++|+.|+|++|.++.+| ..+..+++|+.|+|++|+++.
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 332221 2333578888888888875 334456778888888888888888774 457888888888888888888
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|..... ++|+.|+|++|+++++++. .+.+|+.|++++|++.
T Consensus 519 l~~~~~~-~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 519 LSHNDLP-ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCC-SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred cChhhhh-ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence 7755333 7888888888888875332 2457888888888754
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=401.21 Aligned_cols=516 Identities=17% Similarity=0.126 Sum_probs=370.2
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCC-C-CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~Ls~n~~ 123 (785)
+..+.+++.++.+|. .+++|++|+|++|.|+.+ +..+.++++|++|+|++|.....+ | .|..+++|++|+|++|.+
T Consensus 7 ~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 578899999999998 778999999999999977 567999999999999999665555 4 599999999999999998
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCc--c-ccccccEEeccCCcCCCCCCC-ccc--ccccccccccccccccc-
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTS--I-HSKYLKRLVLRGCSNLKNLPK-MTS--CHLRSTLPLLGVGIEEL- 196 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~--~-~l~~L~~L~ls~~~~l~~lp~-~~~--~~L~~~L~l~~~~i~~l- 196 (785)
.+..|..|+++++|++|+|++|.....+|.. + .+++|++|++++|...+..+. .+. .+|+ .|++++|.+..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCCeeC
Confidence 8888999999999999999998777766654 5 899999999999864443332 222 5666 777777777543
Q ss_pred Ccchhcc--ccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcc-------ccccc
Q 003936 197 PSSIKCL--SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSS-------ELKLK 267 (785)
Q Consensus 197 p~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~L~l~ 267 (785)
+..+..+ ++|+.|++++|.+.+..+..++.+++.- ....|+.+++++|.+++.....+... .+.+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF-----RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT-----TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCcc-----ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 4556655 6777777777777666655444443200 01125555666665544332222111 12221
Q ss_pred C---------CCCCCCCCCCccC--CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccC-CccccCcccccee
Q 003936 268 K---------CPRPESLPSGQCM--FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIREL-PEGLGQLALLSKL 335 (785)
Q Consensus 268 ~---------~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L 335 (785)
. +.........+.. .++|+.|++.+|...+..|..+..+++|+.|++++|.++.+ |..++.+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1 1111111111222 25677777777665555566667777777777777777654 3346667777777
Q ss_pred cccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEE
Q 003936 336 ELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSL 415 (785)
Q Consensus 336 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L 415 (785)
++++|.+.+..+..+..+++|+.|++++|. +..+ .+..+..+++|+.|
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-----------------i~~~---------------~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNH-----------------IAII---------------QDQTFKFLEKLQTL 367 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCC-----------------CCCC---------------CSSCSCSCCCCCEE
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCC-----------------CCcc---------------ChhhhcCCCCCCEE
Confidence 777776666666666667777777776663 2221 12356789999999
Q ss_pred EeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCcc-CCccccCCCCCCEEEeeCCcCcc
Q 003936 416 EIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFES-LPSRLYVSKSLTSLEIIDCKNFM 494 (785)
Q Consensus 416 ~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~-lp~~~~~~~~L~~L~l~~~~~~~ 494 (785)
++++|.+.+ +..+++|+.|++++|.++.+|... ..++.+++++|...+. .+..+..+++|+.|++++|++.+
T Consensus 368 ~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~--~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 368 DLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp EEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCC--TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred ECCCCCCCc-----ccCCCCcchhccCCCCcccccccc--cccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 999998754 233788999999999999988653 3478888988876542 22334578999999999999886
Q ss_pred cCCC-ccccccccceEEecCeecccc------CcccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccCCCCCCC
Q 003936 495 RLPD-EIGNLEYLKVLTIKGTAIREV------PESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 495 ~~~~-~~~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp 566 (785)
..+. .+..+++|+.|++++|.++.+ +..+.++++|+.|+|++|+++++| ..+..+++|+.|+|++|+++.+|
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 5443 456789999999999999743 356889999999999999999976 45899999999999999999987
Q ss_pred CcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 567 ERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 567 ~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
..... ++|+.|++++|+++.+++.. -.+++.++++-+...|.
T Consensus 521 ~~~~~-~~L~~L~Ls~N~l~~~~~~~-------~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 521 HNDLP-ANLEILDISRNQLLAPNPDV-------FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCC-SCCCEEEEEEECCCCCCSCC-------CSSCCEEEEEEECCCCS
T ss_pred hhhhh-ccccEEECCCCcCCCCChhH-------hCCcCEEEecCCCcccc
Confidence 65444 89999999999988665431 23677766666777663
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=387.24 Aligned_cols=492 Identities=18% Similarity=0.181 Sum_probs=333.9
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-ccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~ 97 (785)
++++.++..+ ..+|..+. +++++|++++|.++.++. ..+++|++|++++|+++.++ ..|.++++|++|+|++
T Consensus 10 ~~~~c~~~~l---~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNF---YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCC---SSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCc---cccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 3445554444 55666543 678888888888887765 77888889999888888775 4588888899999988
Q ss_pred CccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~l 174 (785)
|.+....| .+..+++|++|++++|.+....+..++.+++|++|++++|.... .+|..+ ++++|++|++++|......
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 88666555 58888888999988887555444468888889999988876555 467777 7888888888887433222
Q ss_pred CCccc--ccc----ccccccccccccccCcchhccccccceeccccccc-cccchhhhcccccccccccC--CC---CCc
Q 003936 175 PKMTS--CHL----RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL-ENISSSIFKLQFLESIRIHR--CP---NLQ 242 (785)
Q Consensus 175 p~~~~--~~L----~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~--~~---~L~ 242 (785)
+.... .++ + .+++++|.+..++.......+|+.|++++|... ..++..+..++.++.+.+.. .. .++
T Consensus 166 ~~~~~~l~~L~~~~~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCC-EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhh-hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 22222 233 3 667777777776655444447888888776432 23344455555544433221 00 000
Q ss_pred cccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCC--CCcEEecccCCC-CCCCCccccCccccceeeccCccc
Q 003936 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFK--SLTSLEIIDCPN-FERLPDELGNLQALNRLIIDGTAI 319 (785)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~L~~n~i 319 (785)
.+. ...+..+. .++.+.+.++.. .+..|..+..+++|+.|++++|.+
T Consensus 245 ~~~------------------------------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 245 KFD------------------------------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp ECC------------------------------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred hcc------------------------------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 000 00011111 245555555532 345667777788888888888888
Q ss_pred ccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCC
Q 003936 320 RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399 (785)
Q Consensus 320 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l 399 (785)
+.+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.....+
T Consensus 295 ~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~----------------------------- 341 (570)
T 2z63_A 295 ERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF----------------------------- 341 (570)
T ss_dssp CSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC-----------------------------
T ss_pred hhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc-----------------------------
Confidence 8888777777 8888888887765 4444 46777888888877522111
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcC--CcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-cc
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERL--PDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SR 475 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~ 475 (785)
+. ..+++|+.|++++|.+.+.. |..+..+++|++|++++|.++.+|..+..+. |+.|++++|...+..| ..
T Consensus 342 ---~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 342 ---SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp ---CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ---cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 11 34555666666665544332 4445555666666666666555554443332 5555555555444433 34
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc--ccCcccCCCCCCcEEEccCCccccc-cccccCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR--EVPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSL 552 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 552 (785)
+..+++|++|++++|.+.+..|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|+++++ |..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 556689999999999998888888999999999999999987 5788899999999999999999886 7788999999
Q ss_pred CEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 553 VSLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 553 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.|++++|+++++| ..+..+++|+.|++++|+++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999999998874 45788999999999999855
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=380.64 Aligned_cols=266 Identities=18% Similarity=0.218 Sum_probs=188.3
Q ss_pred CCcEEecccCCCCCCCCc--cccCccccceeeccCcccc-cCCccccCccccceecccCccCCccccccccCCCC-CCEE
Q 003936 284 SLTSLEIIDCPNFERLPD--ELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS-VESI 359 (785)
Q Consensus 284 ~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L 359 (785)
+|+.|++.+|... .+|. .++++++|++|++++|.++ .+| .++.+++|++|++++|.+. .+|..+..+++ |+.|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 3333333333332 4555 5666666666666666666 666 5666666666666666554 56666666666 6666
Q ss_pred EeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC--CCCcEEEeccccCCCcCCcccC------
Q 003936 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF--KSLTSLEIIDCKKLERLPDELG------ 431 (785)
Q Consensus 360 ~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l--~~L~~L~l~~~~~~~~~p~~~~------ 431 (785)
++++|. +..+|..+..+ ++|+.|++++|.+.+..|..+.
T Consensus 383 ~Ls~N~---------------------------------l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 383 SFAHNK---------------------------------LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp ECCSSC---------------------------------CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EccCCc---------------------------------CcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 666663 22333333333 3677777777776666666666
Q ss_pred -CcccchhhhccCccccccChhhhh-h-hhcccccccCCCCccCCccccC--------CCCCCEEEeeCCcCcccCCCcc
Q 003936 432 -NLEALEELRVEGTGIREVPKSLAQ-L-ALSKLKLKKCSSFESLPSRLYV--------SKSLTSLEIIDCKNFMRLPDEI 500 (785)
Q Consensus 432 -~l~~L~~L~L~~n~i~~lp~~~~~-l-~L~~L~l~~~~~~~~lp~~~~~--------~~~L~~L~l~~~~~~~~~~~~~ 500 (785)
.+++|+.|++++|.++.+|..+.. + .|+.|++++|... .+|..... +++|+.|++++|++. .+|..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 566677777777777766665543 2 3666777666655 55544332 238999999999988 688877
Q ss_pred c--cccccceEEecCeeccccCcccCCCCCCcEEEcc------CCccc-cccccccCCCCCCEEEcccCCCCCCCCcCcC
Q 003936 501 G--NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLS------DNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDP 571 (785)
Q Consensus 501 ~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls------~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 571 (785)
. .+++|+.|++++|.++.+|..+..+++|++|+|+ +|++. .+|..++.+++|+.|+|++|+++.+|..+.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~- 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-
Confidence 6 8999999999999999999999999999999995 45555 489999999999999999999988998866
Q ss_pred CCCCCEEeCCCCCCCCCc
Q 003936 572 LSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp 589 (785)
++|+.|++++|++..++
T Consensus 587 -~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 587 -PNISVLDIKDNPNISID 603 (636)
T ss_dssp -TTCCEEECCSCTTCEEE
T ss_pred -CcCCEEECcCCCCcccc
Confidence 79999999999987664
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.96 Aligned_cols=449 Identities=20% Similarity=0.226 Sum_probs=218.9
Q ss_pred EEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccc
Q 003936 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTE 126 (785)
Q Consensus 49 L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~ 126 (785)
.+.+++.++.+|..-.++|++|++++|+++.+ |..+..+++|++|+|++|++....| .+..+++|++|++++|.+.+.
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 45555556666652235666666666666655 3446666666666666666554444 356666666666666665554
Q ss_pred cccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccc---cccccccccccccccc-cCcch
Q 003936 127 THSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS---CHLRSTLPLLGVGIEE-LPSSI 200 (785)
Q Consensus 127 ~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~---~~L~~~L~l~~~~i~~-lp~~l 200 (785)
.+..++.+++|++|++++|.... ..|..+ ++++|++|++++|..++.+|.... .+|+ +|++++|.+.. .|.++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcccccChhhh
Confidence 44456666666666666654433 234444 566666666666543333332110 1222 33333333332 34455
Q ss_pred hccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCcc
Q 003936 201 KCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC 280 (785)
Q Consensus 201 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~ 280 (785)
+.+++|++|++++|.........+..+++|+.|++ ++|.+++...... ....
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L-----------~~n~l~~~~~~~~-----------------~~~~ 220 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL-----------RDTNLARFQFSPL-----------------PVDE 220 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE-----------ESCBCTTCCCCCC-----------------SSCC
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEc-----------cCCcccccccccc-----------------chhh
Confidence 56666666666665543221111223333333333 3333322110000 0111
Q ss_pred CCCCCcEEecccCCCCC----CCCccccCccccceeeccCcccccCCc-------cccCccccceecccCccCCcc----
Q 003936 281 MFKSLTSLEIIDCPNFE----RLPDELGNLQALNRLIIDGTAIRELPE-------GLGQLALLSKLELKNCSELEY---- 345 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~lp~-------~l~~l~~L~~L~l~~~~~~~~---- 345 (785)
.+++|+.|++.++...+ .++..+..+++|+.+++++|.+..++. .+..+++|+.|++.++.+...
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 300 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence 23445555554443221 112223334445555555544432211 123344444444444332211
Q ss_pred -ccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-cCCCCCcEEEeccccCC
Q 003936 346 -ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-CMFKSLTSLEIIDCKKL 423 (785)
Q Consensus 346 -~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~ 423 (785)
++.......+|+.|++++| . +..+|..+ ..+++|+.|++++|.+.
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n-----------------~----------------l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENS-----------------K----------------VFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESS-----------------C----------------CCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cchhhhhhcccceEEEeccC-----------------c----------------cccCCHHHHhcCccccEEEccCCccc
Confidence 0111112234444444443 2 33445444 46788888888888877
Q ss_pred CcCC---cccCCcccchhhhccCccccccCh---hhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC
Q 003936 424 ERLP---DELGNLEALEELRVEGTGIREVPK---SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP 497 (785)
Q Consensus 424 ~~~p---~~~~~l~~L~~L~L~~n~i~~lp~---~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 497 (785)
+.+| ..++.+++|+.|++++|.++.++. .+..+ ++|++|++++|++. .+|
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-----------------------~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-----------------------KNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-----------------------TTCCEEECTTCCCC-CCC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcC-----------------------CCCCEEECCCCCCc-cCC
Confidence 7654 336778888888888888887653 23333 45555555555443 344
Q ss_pred CccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCE
Q 003936 498 DEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 498 ~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
..+..+++|++|++++|.++.+|..+ .++|++|++++|++++++ ..+++|+.|++++|+++.+|+ ...+++|++
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLV 477 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCE
T ss_pred hhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCE
Confidence 44445555555555555555444322 134555555555554433 244455555555555555544 234455555
Q ss_pred EeCCCCCCCCCc
Q 003936 578 LDLFENNLDRIP 589 (785)
Q Consensus 578 L~l~~n~l~~lp 589 (785)
|++++|+++.+|
T Consensus 478 L~Ls~N~l~~~~ 489 (549)
T 2z81_A 478 MKISRNQLKSVP 489 (549)
T ss_dssp EECCSSCCCCCC
T ss_pred EecCCCccCCcC
Confidence 555555544443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=380.23 Aligned_cols=351 Identities=15% Similarity=0.192 Sum_probs=223.6
Q ss_pred CccccCCC-CCccccccceeccccccCccc-----------------cccccc--cCCcccEEecCCCCCCCcCCCcc-c
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTE-----------------THSSIQ--YLNKLEVLDLDRCKSLTSLPTSI-H 156 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~l~--~l~~L~~L~L~~~~~~~~~p~~~-~ 156 (785)
|.+.. +| .++.+++|++|+|++|.+.+. +|+.++ ++++|++|++++|...+.+|..+ +
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34444 55 477788888888888876664 777777 88888888888877777778777 7
Q ss_pred cccccEEeccCCcCCC--CCCCccc--------cccccccccccccccccCc--chhccccccceeccccccccccchhh
Q 003936 157 SKYLKRLVLRGCSNLK--NLPKMTS--------CHLRSTLPLLGVGIEELPS--SIKCLSNIGELLIYSCKRLENISSSI 224 (785)
Q Consensus 157 l~~L~~L~ls~~~~l~--~lp~~~~--------~~L~~~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~l 224 (785)
+++|++|++++|..++ .+|...+ .+|+ .|++++|.+..+|. .++.+++|++|++++|.+.+.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 7888888888775232 2332221 2333 44444444444454 45555555555555555544444 34
Q ss_pred hcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCcccc
Q 003936 225 FKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELG 304 (785)
Q Consensus 225 ~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 304 (785)
..+++|+.|++++ |.. ..+|..+.
T Consensus 350 ~~l~~L~~L~L~~-------------------------------------------------------N~l-~~lp~~l~ 373 (636)
T 4eco_A 350 GSEIKLASLNLAY-------------------------------------------------------NQI-TEIPANFC 373 (636)
T ss_dssp EEEEEESEEECCS-------------------------------------------------------SEE-EECCTTSE
T ss_pred CCCCCCCEEECCC-------------------------------------------------------Ccc-ccccHhhh
Confidence 4444333333332 211 13455566
Q ss_pred Cccc-cceeeccCcccccCCccccCcc--ccceecccCccCCcccccccc-------CCCCCCEEEeeCCCCCCCCCCCc
Q 003936 305 NLQA-LNRLIIDGTAIRELPEGLGQLA--LLSKLELKNCSELEYISSSIF-------KLKSVESIEISNCSNLKGFPEIP 374 (785)
Q Consensus 305 ~l~~-L~~L~L~~n~i~~lp~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~l~~lp~l~ 374 (785)
.+++ |++|++++|.++.+|..++.++ +|++|++++|.+.+..|..+. .+++|+.|++++|.
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--------- 444 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--------- 444 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC---------
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc---------
Confidence 6666 6666666666666666555443 666666666666666665555 45555555555552
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCCcc-ccCCCCCcEEEeccccCCCcCCcccC--------CcccchhhhccCcc
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLPSS-LCMFKSLTSLEIIDCKKLERLPDELG--------NLEALEELRVEGTG 445 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~--------~l~~L~~L~L~~n~ 445 (785)
+..+|.. +..+++|+.|++++|.+. .+|.... ++++|+.|++++|.
T Consensus 445 ------------------------l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 445 ------------------------ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ------------------------CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred ------------------------cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc
Confidence 2223332 234566666666666655 4443221 12266666666666
Q ss_pred ccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecC------eecc-c
Q 003936 446 IREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG------TAIR-E 518 (785)
Q Consensus 446 i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~-~ 518 (785)
++.+|..+.. ..+++|+.|++++|++.+ +|..+..+++|+.|++++ |.+. .
T Consensus 500 l~~lp~~~~~---------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 500 LTKLSDDFRA---------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp CCBCCGGGST---------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred CCccChhhhh---------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 6666654430 034889999999998887 888888899999999954 5444 6
Q ss_pred cCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 519 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
+|..+..+++|++|+|++|++..+|..+. ++|+.|++++|++..+
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 78899999999999999999988998866 7999999999988764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=368.82 Aligned_cols=456 Identities=20% Similarity=0.230 Sum_probs=257.3
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcEE
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRI 93 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L 93 (785)
++|++|++++|.+. ...|..+.. ++|++|++++|.++.++. ..+++|++|++++|.++.++.. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 46666777766653 112334444 667777777776666553 5666677777777766665443 6666777777
Q ss_pred ecCCCccccC-CC-CCccccccceeccccccCccccc-cccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 94 DLKYSKLLTK-LP-DLSLAQNLEILDLGYCSSLTETH-SSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 94 ~Ls~n~~~~~-~~-~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
+|++|.+... .| .++.+++|++|++++|...+.+| ..++.+++|++|++++|...+..|..+ .+++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 7777665432 22 46666677777777666444444 456666777777777666555566555 56666667666653
Q ss_pred CCCCCCCcc---ccccccccccccccccccC---cc-hhccccccceeccccccccccchhhhcccccccccccCCCCCc
Q 003936 170 NLKNLPKMT---SCHLRSTLPLLGVGIEELP---SS-IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQ 242 (785)
Q Consensus 170 ~l~~lp~~~---~~~L~~~L~l~~~~i~~lp---~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~ 242 (785)
...+|... ..+|+ .+++++|.+..++ .. ...+++|+.|++++|.+.+..+..+... +..+++++
T Consensus 184 -~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-------~~~~~~L~ 254 (549)
T 2z81_A 184 -SAFLLEIFADILSSVR-YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-------LRYILELS 254 (549)
T ss_dssp -STTHHHHHHHSTTTBS-EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG-------GGGCTTCC
T ss_pred -ccccchhhHhhccccc-EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH-------hhhhcccc
Confidence 22333222 13455 6666666655542 11 2335556666666665544333222110 01122333
Q ss_pred cccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-----CCCccccCccccceeeccCc
Q 003936 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-----RLPDELGNLQALNRLIIDGT 317 (785)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~l~~l~~L~~L~L~~n 317 (785)
.+++++|.+.+.... + ......+..+++++.|.+.++..-. .++..+...++|+.|++++|
T Consensus 255 ~l~l~~~~~~~~~~~--~------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 255 EVEFDDCTLNGLGDF--N------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp EEEEESCEEECCSCC--C------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred ccccccccccccccc--c------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 333333333221100 0 0001122345666666666554221 12222233456677777777
Q ss_pred ccccCCccc-cCccccceecccCccCCccccc---cccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcccccc
Q 003936 318 AIRELPEGL-GQLALLSKLELKNCSELEYISS---SIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKL 393 (785)
Q Consensus 318 ~i~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l 393 (785)
.+..+|..+ +.+++|++|++++|.+.+.+|. .+..+++|+.|++++|.
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---------------------------- 372 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---------------------------- 372 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC----------------------------
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc----------------------------
Confidence 776666654 4566777777777666655432 24455555555555552
Q ss_pred CCCCCCccCC---ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCc
Q 003936 394 NKCSKLESLP---SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFE 470 (785)
Q Consensus 394 ~~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~ 470 (785)
+..++ ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+|.
T Consensus 373 -----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~------------------- 427 (549)
T 2z81_A 373 -----LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT------------------- 427 (549)
T ss_dssp -----CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-------------------
T ss_pred -----ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-------------------
Confidence 11111 12444555555555555443 344444444455555555444443332
Q ss_pred cCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCC
Q 003936 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLS 550 (785)
Q Consensus 471 ~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 550 (785)
.+ .++|+.|++++|.++.++ ..+++|++|+|++|+++.+|. ...++
T Consensus 428 ----------------------------~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~ 473 (549)
T 2z81_A 428 ----------------------------CI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFP 473 (549)
T ss_dssp ----------------------------TS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCT
T ss_pred ----------------------------hh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCc
Confidence 11 135666666666666554 467888899999998888886 46788
Q ss_pred CCCEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 551 SLVSLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|+.|+|++|+++++| ..+..+++|+.|++++|++.
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 9999999999998864 45889999999999999854
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=374.58 Aligned_cols=414 Identities=18% Similarity=0.204 Sum_probs=264.5
Q ss_pred cCceEEEcCCCCcc-cccccccCCCCCcEEec-CCCccccCCC-C-----------------------------------
Q 003936 65 ENLVSLKMPGSKVT-QLWDDVQNLVSLKRIDL-KYSKLLTKLP-D----------------------------------- 106 (785)
Q Consensus 65 ~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L-s~n~~~~~~~-~----------------------------------- 106 (785)
.+++.|+|+++.+. .+|..+++|++|++|+| ++|.+....+ .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999988 77888999999999999 7776433321 0
Q ss_pred ----------------Cccccccceecccc--ccCccccccccccCCcccEEecCCCCCCC-----------------cC
Q 003936 107 ----------------LSLAQNLEILDLGY--CSSLTETHSSIQYLNKLEVLDLDRCKSLT-----------------SL 151 (785)
Q Consensus 107 ----------------l~~l~~L~~L~Ls~--n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~ 151 (785)
......++.+.+.. |.+.+ +|..++++++|++|+|++|...+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01122334444433 44444 77778888888888888766555 16
Q ss_pred CCcc---ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccc-ccc-ccchhhhc
Q 003936 152 PTSI---HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCK-RLE-NISSSIFK 226 (785)
Q Consensus 152 p~~~---~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~-~~~-~~~~~l~~ 226 (785)
|..+ ++++|++|++++|... ..+|..++++++|+.|++++|+ +.+ .+|..++.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~----------------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~ 539 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNM----------------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTC----------------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH
T ss_pred ChhhhhccCCCCCEEECcCCCCC----------------------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHh
Confidence 6654 4666777776666433 2345566677777777777776 665 66766665
Q ss_pred ccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc--ccc
Q 003936 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD--ELG 304 (785)
Q Consensus 227 l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~ 304 (785)
++. .+..++ +|+.|++.+|... .+|. .+.
T Consensus 540 L~~----~~~~l~--------------------------------------------~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 540 LAD----DEDTGP--------------------------------------------KIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp HHH----CTTTTT--------------------------------------------TCCEEECCSSCCC-BCCCHHHHT
T ss_pred hhh----cccccC--------------------------------------------CccEEEeeCCcCC-ccCChhhhh
Confidence 541 112223 3333333333322 4454 555
Q ss_pred CccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCC-CCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS-VESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
++++|+.|++++|.++.+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~------------------ 630 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK------------------ 630 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC------------------
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC------------------
Confidence 5566666666666665555 4555666666666665544 55555555555 6666655553
Q ss_pred cccCccccccCCCCCCccCCccccCCC--CCcEEEeccccCCCcCCcc---cC--CcccchhhhccCccccccChhhh-h
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFK--SLTSLEIIDCKKLERLPDE---LG--NLEALEELRVEGTGIREVPKSLA-Q 455 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~p~~---~~--~l~~L~~L~L~~n~i~~lp~~~~-~ 455 (785)
+..+|..+..++ +|+.|++++|.+.+.+|.. +. .+++|+.|++++|.++.+|..+. .
T Consensus 631 ---------------L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~ 695 (876)
T 4ecn_A 631 ---------------LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695 (876)
T ss_dssp ---------------CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred ---------------CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence 112233333332 2555555555555443321 11 22355555566655555555443 2
Q ss_pred h-hhcccccccCCCCccCCccccC--------CCCCCEEEeeCCcCcccCCCccc--cccccceEEecCeeccccCcccC
Q 003936 456 L-ALSKLKLKKCSSFESLPSRLYV--------SKSLTSLEIIDCKNFMRLPDEIG--NLEYLKVLTIKGTAIREVPESLG 524 (785)
Q Consensus 456 l-~L~~L~l~~~~~~~~lp~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~lp~~~~ 524 (785)
+ .|+.|++++|... .+|..+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|.++.+|..+.
T Consensus 696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp TCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred CCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence 2 2555555555433 44443332 238999999999887 6787776 89999999999999999998899
Q ss_pred CCCCCcEEEccC------Cccc-cccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 525 QLSSLEWLVLSD------NNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 525 ~l~~L~~L~Ls~------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
.+++|+.|+|++ |++. .+|..+..+++|+.|+|++|++..+|..+. ++|+.|+|++|++..+.
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccC
Confidence 999999999977 5555 488899999999999999999988998765 69999999999987664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=368.32 Aligned_cols=476 Identities=18% Similarity=0.158 Sum_probs=363.5
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-ccccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW-DDVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~ 92 (785)
++++.|++++|.+ ..++. .+.. ++|++|++++|.++.++. ..+++|++|++++|.++.++ ..|..+++|++
T Consensus 28 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCC---CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcc---CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5789999999988 34443 4444 999999999999998875 77999999999999999886 56999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc----cEEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL----KRLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L----~~L~l 165 (785)
|++++|.+....+ .++.+++|++|++++|.+.. .+|..++++++|++|++++|......|..+ .+++| +.|++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999998655544 48999999999999998766 579999999999999999987665556666 77888 89999
Q ss_pred cCCcCCCCCCCccc-cccccccccccccc--cccCcchhccccccceecccccccc-----cc-chhhhccccccccccc
Q 003936 166 RGCSNLKNLPKMTS-CHLRSTLPLLGVGI--EELPSSIKCLSNIGELLIYSCKRLE-----NI-SSSIFKLQFLESIRIH 236 (785)
Q Consensus 166 s~~~~l~~lp~~~~-~~L~~~L~l~~~~i--~~lp~~l~~l~~L~~L~L~~~~~~~-----~~-~~~l~~l~~L~~L~l~ 236 (785)
++|......|.... ..|+ .+++.+|.. ..++..+..++.++.+.+....... .+ ...+..++++ .
T Consensus 185 ~~n~l~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l---~-- 258 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL---T-- 258 (570)
T ss_dssp TTCCCCEECTTTTTTCEEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS---E--
T ss_pred CCCCceecCHHHhccCcce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc---c--
Confidence 99864444343333 3577 888887643 3566677788887776665332211 11 1111122111 1
Q ss_pred CCCCCccccCCCcccCCCCCccCCcccccccCC-CCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKC-PRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 237 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
++.++ +..+ ...+..+..+..+++|+.|++.++.. ..+|..+..+ +|++|+++
T Consensus 259 ----l~~l~--------------------l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 259 ----IEEFR--------------------LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp ----EEEEE--------------------EEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEE
T ss_pred ----hhhhh--------------------hhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeec
Confidence 11111 2222 22344566677789999999988864 4688888888 99999999
Q ss_pred CcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCC
Q 003936 316 GTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNK 395 (785)
Q Consensus 316 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~ 395 (785)
+|.+..+|. ..+++|++|++++|...+..+. ..+++|+.|++++|.. .
T Consensus 313 ~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l-~--------------------------- 360 (570)
T 2z63_A 313 NCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL-S--------------------------- 360 (570)
T ss_dssp SCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC-B---------------------------
T ss_pred cCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc-C---------------------------
Confidence 999998886 5788999999999987766654 6788899999888751 0
Q ss_pred CCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhhh-hcccccccCCCCccC
Q 003936 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQLA-LSKLKLKKCSSFESL 472 (785)
Q Consensus 396 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~-L~~L~l~~~~~~~~l 472 (785)
.....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.++..+. .+..+. |+.|++++|...+..
T Consensus 361 --~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 361 --FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp --EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred --ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 0111244566778888888888876554333 7778888888888888775543 344443 788888888877777
Q ss_pred CccccCCCCCCEEEeeCCcCc-ccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNF-MRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQL 549 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l 549 (785)
|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|+++++| ..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 888888899999999999987 57899999999999999999999988 788999999999999999999976 458999
Q ss_pred CCCCEEEcccCCCCC
Q 003936 550 SSLVSLKLSNNNLER 564 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~ 564 (785)
++|+.|++++|.++.
T Consensus 518 ~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 518 TSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cCCcEEEecCCcccC
Confidence 999999999999875
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=362.91 Aligned_cols=437 Identities=17% Similarity=0.167 Sum_probs=315.6
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
++|++++|.+ ..+|..+. ++|++|++++|.++.++. ..+++|++|++++|+++.+ |..+..+++|++|+|++
T Consensus 3 ~~l~ls~n~l---~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGL---IHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCC---SSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCc---cccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 5789999888 56787666 899999999999998874 7899999999999999977 66799999999999999
Q ss_pred CccccCCCCCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc--cEEeccCCcC--C
Q 003936 98 SKLLTKLPDLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL--KRLVLRGCSN--L 171 (785)
Q Consensus 98 n~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L--~~L~ls~~~~--l 171 (785)
|++. .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.... ..+ .+++| ++|++++|.. .
T Consensus 79 N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Ccee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9865 45644 89999999999998776 578899999999999999976544 233 67777 9999998865 3
Q ss_pred CCCCCcccc---cccccccccccccc-ccC-cchhccccccceeccccc-------cccccchhhhcccccccccccCCC
Q 003936 172 KNLPKMTSC---HLRSTLPLLGVGIE-ELP-SSIKCLSNIGELLIYSCK-------RLENISSSIFKLQFLESIRIHRCP 239 (785)
Q Consensus 172 ~~lp~~~~~---~L~~~L~l~~~~i~-~lp-~~l~~l~~L~~L~L~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~ 239 (785)
...|..... ... .+++.+|.+. .++ ..+..+++|+.+++++|. ..+.++ .+..+++|+.|+
T Consensus 154 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~----- 226 (520)
T 2z7x_B 154 KEDPEGLQDFNTESL-HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT----- 226 (520)
T ss_dssp SCCTTTTTTCCEEEE-EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE-----
T ss_pred ccccccccccccceE-EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc-----
Confidence 333332221 111 2334444432 122 234455666666666554 222222 233333333333
Q ss_pred CCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCC----CCccccCccccceeecc
Q 003936 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFER----LPDELGNLQALNRLIID 315 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~ 315 (785)
+.++...+. ++..+ ..++|++|+++
T Consensus 227 --------------------------------------------------l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~ 255 (520)
T 2z7x_B 227 --------------------------------------------------LNNIETTWNSFIRILQLV-WHTTVWYFSIS 255 (520)
T ss_dssp --------------------------------------------------EEEEEEEHHHHHHHHHHH-HTSSCSEEEEE
T ss_pred --------------------------------------------------ccccccCHHHHHHHHHHh-hhCcccEEEee
Confidence 332221110 00001 12467777777
Q ss_pred Ccccc-cCCccc-----cCccccceecccCccCCcccc-ccccCC---CCCCEEEeeCCCCCCCCCCCceeccCCCCCcc
Q 003936 316 GTAIR-ELPEGL-----GQLALLSKLELKNCSELEYIS-SSIFKL---KSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385 (785)
Q Consensus 316 ~n~i~-~lp~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~ 385 (785)
+|.++ .+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|..
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l------------------- 314 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM------------------- 314 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-------------------
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-------------------
Confidence 77777 677666 7777777777777766 444 333333 5678888877741
Q ss_pred cCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccC---hhhhhhhhcccc
Q 003936 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP---KSLAQLALSKLK 462 (785)
Q Consensus 386 lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp---~~~~~l~L~~L~ 462 (785)
...+ ....+++|+.|++++|.+.+..|..++.+++|++|++++|.++.++ ..+..+
T Consensus 315 --------------~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l------ 373 (520)
T 2z7x_B 315 --------------VHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM------ 373 (520)
T ss_dssp --------------CCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC------
T ss_pred --------------cccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC------
Confidence 1111 1147789999999999998888989999999999999999988654 334333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
++|++|++++|.+.+.+|. .+..+++|+.|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 374 -----------------~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 374 -----------------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp -----------------TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred -----------------CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 8999999999999885665 4788899999999999986 4455443 79999999999999
Q ss_pred cccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 541 IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 541 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
.+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++|+++
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 9999888999999999999999999886 889999999999999865
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=370.85 Aligned_cols=427 Identities=14% Similarity=0.151 Sum_probs=253.9
Q ss_pred CceEEEEecCCCCc-cccc--ccccCceEEEc-CCCCcccc-ccc-----------------------------------
Q 003936 44 TELRYFEWHQFPLK-TLNI--LHWENLVSLKM-PGSKVTQL-WDD----------------------------------- 83 (785)
Q Consensus 44 ~~L~~L~l~~~~l~-~lp~--~~l~~L~~L~L-~~~~i~~l-~~~----------------------------------- 83 (785)
.++..|+|+++.+. .+|. ..+++|++|+| ++|.+... +-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888888888886 6666 78888888888 66654311 000
Q ss_pred --------------c--cCCCCCcEEecCC--CccccCCC-CCccccccceeccccccCcc-----------------cc
Q 003936 84 --------------V--QNLVSLKRIDLKY--SKLLTKLP-DLSLAQNLEILDLGYCSSLT-----------------ET 127 (785)
Q Consensus 84 --------------~--~~l~~L~~L~Ls~--n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-----------------~~ 127 (785)
+ .....++.+.+.. |.+.. +| .++.+++|++|+|++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 55444 55 58888888888888888766 37
Q ss_pred ccccc--cCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccc
Q 003936 128 HSSIQ--YLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLS 204 (785)
Q Consensus 128 ~~~l~--~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~ 204 (785)
|..++ ++++|++|+|++|...+.+|..+ ++++|++|++++|..+.. ..+|..++.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg--------------------~~iP~~i~~L~ 541 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA--------------------AQLKADWTRLA 541 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH--------------------HHHHHHHHHHH
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc--------------------ccchHHHHhhh
Confidence 88877 88888888888888888888777 788888888888742321 02333333333
Q ss_pred -------cccceeccccccccccch--hhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCC
Q 003936 205 -------NIGELLIYSCKRLENISS--SIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESL 275 (785)
Q Consensus 205 -------~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~ 275 (785)
+|+.|++++|.+. .+|. .++++++|+.|+++++ .++ .+
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-----------~l~---------------------~l 588 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-----------KVR---------------------HL 588 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-----------CCC---------------------BC
T ss_pred hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-----------Ccc---------------------cc
Confidence 6666666666665 5555 5555555555544443 110 11
Q ss_pred CCCccCCCCCcEEecccCCCCCCCCccccCccc-cceeeccCcccccCCccccCccc--cceecccCccCCccccccc--
Q 003936 276 PSGQCMFKSLTSLEIIDCPNFERLPDELGNLQA-LNRLIIDGTAIRELPEGLGQLAL--LSKLELKNCSELEYISSSI-- 350 (785)
Q Consensus 276 ~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~~--L~~L~l~~~~~~~~~~~~~-- 350 (785)
| .++.+++|+.|++.+|... .+|..+..+++ |+.|++++|.++.+|..++.++. |+.|++++|.+.+.+|...
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 2 2223344444444444332 44555555555 55566655555555555444432 5555555555544333211
Q ss_pred -c--CCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-cCCCCCcEEEeccccCCCcC
Q 003936 351 -F--KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-CMFKSLTSLEIIDCKKLERL 426 (785)
Q Consensus 351 -~--~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~~ 426 (785)
. .+++|+.|++++|. +..+|..+ ..+++|+.|++++|.+. .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~---------------------------------L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE---------------------------------IQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp TTTCCCCCEEEEECCSSC---------------------------------CCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred hccccCCCcCEEEccCCc---------------------------------CCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 1 12244444444432 12233322 24555555555555444 33
Q ss_pred CcccC--------CcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC
Q 003936 427 PDELG--------NLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD 498 (785)
Q Consensus 427 p~~~~--------~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~ 498 (785)
|..+. ++++|+.|+|++|.++.+|..+.. ..+++|+.|++++|.+.+ +|.
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~---------------------~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA---------------------TTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST---------------------TTCTTCCEEECCSSCCSS-CCC
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhh---------------------ccCCCcCEEEeCCCCCCc-cch
Confidence 33221 122555555555555555544330 044888888888888877 687
Q ss_pred ccccccccceEEecC------eecc-ccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC-CCcCc
Q 003936 499 EIGNLEYLKVLTIKG------TAIR-EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI-PERLD 570 (785)
Q Consensus 499 ~~~~l~~L~~L~L~~------n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 570 (785)
.+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|.+..+|..+. ++|+.|+|++|++..+ +..+.
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 888888888888876 5544 668889999999999999999988998765 6999999999998875 33333
Q ss_pred CCCCCCEEeCCCCC
Q 003936 571 PLSSLKYLDLFENN 584 (785)
Q Consensus 571 ~l~~L~~L~l~~n~ 584 (785)
....+..+.+.+|+
T Consensus 849 ~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 849 PYIEAGMYVLLYDK 862 (876)
T ss_dssp HHHHTTCCEEECCT
T ss_pred ccccchheeecCCC
Confidence 33334444455554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.24 Aligned_cols=443 Identities=16% Similarity=0.141 Sum_probs=275.7
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccc-ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSL 124 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~ 124 (785)
++|++++|.++.+|..-.++|++|++++|.++.++ ..+..+++|++|+|++|++....| .+..+++|++|+|++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 46788888888888722278888888888887765 457788888888888887666555 5777888888888887644
Q ss_pred cccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 125 TETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 125 ~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
.+|.. .+++|++|++++|...+ .+|..+ ++++|++|++++|... . ..+..
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-----------------------~--~~~~~ 134 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-----------------------K--SSVLP 134 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-----------------------G--GGGGG
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-----------------------h--hhccc
Confidence 56655 77788888888766554 456666 6777777777776311 1 12344
Q ss_pred cccc--cceecccccc--ccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCC
Q 003936 203 LSNI--GELLIYSCKR--LENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSG 278 (785)
Q Consensus 203 l~~L--~~L~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~ 278 (785)
+++| +.|++++|.+ .+..|..+..+.. +.++ +++++|.+ .+.++
T Consensus 135 l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~---------l~l~~n~~--------------------~~~~~-- 182 (520)
T 2z7x_B 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLH---------IVFPTNKE--------------------FHFIL-- 182 (520)
T ss_dssp GTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEE---------EECCSSSC--------------------CCCCC--
T ss_pred cccceeeEEEeeccccccccccccccccccc-ceEE---------EEeccCcc--------------------hhhhh--
Confidence 5555 7777777766 4444544443321 1111 11222221 11111
Q ss_pred ccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcc-------cccCCccccCccccceecccCccCCcccccccc
Q 003936 279 QCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTA-------IRELPEGLGQLALLSKLELKNCSELEYISSSIF 351 (785)
Q Consensus 279 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~-------i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 351 (785)
+..+.++++|+.|++++|. +......++.+++|+.|++++|.+.+..+..+.
T Consensus 183 ---------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 183 ---------------------DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp ---------------------CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ---------------------hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 1223444555555555543 221112344455555555555444332211111
Q ss_pred ---CCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-----cCCCCCcEEEeccccCC
Q 003936 352 ---KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-----CMFKSLTSLEIIDCKKL 423 (785)
Q Consensus 352 ---~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-----~~l~~L~~L~l~~~~~~ 423 (785)
..++|+.|++++|... +.+|..+ ..+++|+.+++++|.+
T Consensus 242 ~~~~~~~L~~L~l~~n~l~--------------------------------~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQ--------------------------------GQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEE--------------------------------SCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred HHhhhCcccEEEeeccccc--------------------------------CccccchhhcccccCceeEeccccccce-
Confidence 1235555555554310 1222222 4455555555555554
Q ss_pred CcCC-cccCCc---ccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--cCC
Q 003936 424 ERLP-DELGNL---EALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM--RLP 497 (785)
Q Consensus 424 ~~~p-~~~~~l---~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~--~~~ 497 (785)
.+| ..+..+ .+|+.|++++|.+..++..-....++.|++++|...+.+|..+..+++|++|++++|++.+ .+|
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 333 222222 3455555555555443311111125555666665555566666777999999999999986 667
Q ss_pred CccccccccceEEecCeeccc-cCcc-cCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCCCCcCcCCCC
Q 003936 498 DEIGNLEYLKVLTIKGTAIRE-VPES-LGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERIPERLDPLSS 574 (785)
Q Consensus 498 ~~~~~l~~L~~L~L~~n~l~~-lp~~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 574 (785)
..++.+++|+.|++++|.++. +|.. +..+++|++|++++|++++ +|..+. ++|+.|++++|+++.+|..+..+++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEA 445 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCC
Confidence 788999999999999999997 8764 7889999999999999965 666554 7999999999999999999999999
Q ss_pred CCEEeCCCCCCCCCccc-cccCCCCCCcccccccceee
Q 003936 575 LKYLDLFENNLDRIPEY-LRSFPTSIPSEFTSLRLSVD 611 (785)
Q Consensus 575 L~~L~l~~n~l~~lp~~-~~~~~~~ip~~l~~l~~~l~ 611 (785)
|++|++++|+++.+|.. +.. .++|+.++++-+
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~l~~N 478 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDR-----LTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcc-----CCcccEEECcCC
Confidence 99999999999999865 211 345666444333
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=351.59 Aligned_cols=515 Identities=18% Similarity=0.155 Sum_probs=327.0
Q ss_pred cccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-cccCCCCCcEEecCCCccccCCC-CCcc
Q 003936 35 VHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKRIDLKYSKLLTKLP-DLSL 109 (785)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~~-~l~~ 109 (785)
..+|.++. .++++|++++|.++.+|. ..+++|++|+|++|+|+.++. .|.++++|++|+|++|++....+ .|..
T Consensus 44 ~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 44 YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 56777665 678999999999999986 778999999999999998865 48999999999999998665554 4889
Q ss_pred ccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccc--ccc---
Q 003936 110 AQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHL--- 182 (785)
Q Consensus 110 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L--- 182 (785)
+++|++|+|++|.+.+..+..|+++++|++|++++|.... ..|..+ .+++|++|++++|...+..+.... ..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999998766556678999999999999976544 456666 789999999999853332232221 111
Q ss_pred ccccccccccccccCcchhccccccceeccccccccc-cchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCc
Q 003936 183 RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN-ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPS 261 (785)
Q Consensus 183 ~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 261 (785)
...++++.|.+..++........++.+++.++..... .+..+..+..++...+..........+.
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~-------------- 268 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-------------- 268 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS--------------
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc--------------
Confidence 1156677888888887777777777888877755432 2334445555444333211000000000
Q ss_pred ccccccCCCCCCCCCCCccCCCCCcEEecccCCC---CCCCCccccCccccceeeccCcccccCCccccCccccceeccc
Q 003936 262 SELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN---FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELK 338 (785)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~ 338 (785)
......+.....+....+..+.. ....+..+..+.+++.+.+.++.+..++. +....+|+.|++.
T Consensus 269 -----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 269 -----------KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELV 336 (635)
T ss_dssp -----------CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEE
T ss_pred -----------cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcc
Confidence 00011111222233222222111 11223334455566666666665554443 3445566666666
Q ss_pred CccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEec
Q 003936 339 NCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEII 418 (785)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~ 418 (785)
+|.+....+ ..+..|+.+++.++.... +.....+++|+.|+++
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~----------------------------------~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGGN----------------------------------AFSEVDLPSLEFLDLS 379 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSCC----------------------------------BCCCCBCTTCCEEECC
T ss_pred cccccCcCc---ccchhhhhcccccccCCC----------------------------------Ccccccccccccchhh
Confidence 665443322 234556666666553110 0111234445555555
Q ss_pred cccCCC--cCCcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-ccccCCCCCCEEEeeCCcCcc
Q 003936 419 DCKKLE--RLPDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SRLYVSKSLTSLEIIDCKNFM 494 (785)
Q Consensus 419 ~~~~~~--~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~~~~~~~L~~L~l~~~~~~~ 494 (785)
+|.+.. ..+..+..+.+|+.+++..+.+..++..+..+. ++.+++.++......+ ..+..+++++.++++.|.+.+
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 544322 223333344445555555554444333333222 4444444444433332 234556889999999999888
Q ss_pred cCCCccccccccceEEecCeecc-c-cCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCCC-CcCc
Q 003936 495 RLPDEIGNLEYLKVLTIKGTAIR-E-VPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERIP-ERLD 570 (785)
Q Consensus 495 ~~~~~~~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 570 (785)
..+..+..+++|+.|++++|.+. . +|..+..+++|++|+|++|+++++ |..|+++++|+.|+|++|++++++ ..+.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 88888888999999999988754 3 478888999999999999999886 567889999999999999999874 4578
Q ss_pred CCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 571 PLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 571 ~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
.+++|++|++++|+|+.+|+. ....+|.+|+.++++-+.+.|.
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSS---CTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCCHH---HHHhhhCcCCEEEeeCCCCccc
Confidence 899999999999998877543 1123467788866666666663
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=343.69 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=165.5
Q ss_pred cccceeeccCcccc-cCCccc-----cCccccceecccCccCCcccc-ccccC---CCCCCEEEeeCCCCCCCCCCCcee
Q 003936 307 QALNRLIIDGTAIR-ELPEGL-----GQLALLSKLELKNCSELEYIS-SSIFK---LKSVESIEISNCSNLKGFPEIPFC 376 (785)
Q Consensus 307 ~~L~~L~L~~n~i~-~lp~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~---l~~L~~L~l~~~~~l~~lp~l~~l 376 (785)
++|++|++++|.++ .+|..+ +.++.|+.+++..+.. .+| ..+.. ..+|+.|++++|.
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~----------- 342 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP----------- 342 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-----------
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-----------
Confidence 36777777777776 666655 5555666666555544 333 12221 2567777777764
Q ss_pred ccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhh
Q 003936 377 NIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL 456 (785)
Q Consensus 377 ~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l 456 (785)
+. ..+ ....+++|+.|++++|.+.+..|..++.+++|++|++++|.++.++...
T Consensus 343 ------~~----------------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--- 396 (562)
T 3a79_B 343 ------FI----------------HMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA--- 396 (562)
T ss_dssp ------CC----------------CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH---
T ss_pred ------cc----------------ccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch---
Confidence 11 111 1146789999999999998888888999999999999999988765311
Q ss_pred hhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccccccceEEecCeeccc-cCcccCCCCCCcEEEc
Q 003936 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVL 534 (785)
Q Consensus 457 ~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L 534 (785)
..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.++. +|..+. ++|++|++
T Consensus 397 -----------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 397 -----------------LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp -----------------HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred -----------------hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 1223348999999999998885554 57888999999999999864 344333 68999999
Q ss_pred cCCccccccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 535 SDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 535 s~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++.+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 458 ~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999998888999999999999999999887 888999999999999854
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=331.00 Aligned_cols=395 Identities=24% Similarity=0.273 Sum_probs=187.3
Q ss_pred cccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEe
Q 003936 63 HWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 63 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
...+|++|++++|.+..+|.+++++++|++|++++|.+.+.+| .++.+++|+.+++++|.. .++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 3456666777777776667667777777777777776665555 466666665555555431 3456666
Q ss_pred cCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccc
Q 003936 142 LDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS 221 (785)
Q Consensus 142 L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 221 (785)
+++|. ++.+|.. .++|++|++++|. ++.+|... .+|+ .+++++|.+..+|... ++|++|++++|.+.+ +|
T Consensus 78 l~~~~-l~~lp~~--~~~L~~L~l~~n~-l~~lp~~~-~~L~-~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 78 LNNLG-LSSLPEL--PPHLESLVASCNS-LTELPELP-QSLK-SLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CTTSC-CSCCCSC--CTTCSEEECCSSC-CSSCCCCC-TTCC-EEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CC
T ss_pred ecCCc-cccCCCC--cCCCCEEEccCCc-CCcccccc-CCCc-EEECCCCccCcccCCC---CCCCEEECcCCCCCC-Cc
Confidence 66643 3344431 2456666665553 33344322 4455 5555555555554321 466666666665543 33
Q ss_pred hhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc
Q 003936 222 SSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301 (785)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 301 (785)
.++.+++|+.|++++ |.+++ +|.. .++|+.|++.+|... .+|
T Consensus 148 -~~~~l~~L~~L~l~~-----------N~l~~---------------------lp~~---~~~L~~L~L~~n~l~-~l~- 189 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDN-----------NSLKK---------------------LPDL---PPSLEFIAAGNNQLE-ELP- 189 (454)
T ss_dssp -CCTTCTTCCEEECCS-----------SCCSC---------------------CCCC---CTTCCEEECCSSCCS-SCC-
T ss_pred -ccCCCCCCCEEECCC-----------CcCcc---------------------cCCC---cccccEEECcCCcCC-cCc-
Confidence 233333333333333 22211 1111 235566666555332 244
Q ss_pred cccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 302 ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 302 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
.++++++|++|++++|.++.+|.. .++|++|++++|.+. .+|. +..+++|+.|++++|.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~---------------- 248 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL---------------- 248 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC----------------
T ss_pred cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc----------------
Confidence 466666777777777766666543 246666777766544 4553 5566666666666653
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L 461 (785)
+..+|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|..
T Consensus 249 -----------------l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~--------- 295 (454)
T 1jl5_A 249 -----------------LKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL--------- 295 (454)
T ss_dssp -----------------CSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---------
T ss_pred -----------------CCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---------
Confidence 111221 12456666666665443 3332 25566666666665554421
Q ss_pred ccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccc-cccceEEecCeeccccCcccCCCCCCcEEEccCCccc
Q 003936 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNL-EYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
| ++|+.|++++|++.+ ++ .+ ++|+.|++++|.++.+|.. +++|++|++++|+++
T Consensus 296 -----------~------~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 296 -----------P------PNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp -----------C------TTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred -----------C------CcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc
Confidence 1 466666666666554 11 12 3667777777777766653 466777777777777
Q ss_pred cccccccCCCCCCEEEcccCCCCC---CCCcCcCC-------------CCCCEEeCCCCCCCCCccccccCCCCCCcccc
Q 003936 541 IIPESLNQLSSLVSLKLSNNNLER---IPERLDPL-------------SSLKYLDLFENNLDRIPEYLRSFPTSIPSEFT 604 (785)
Q Consensus 541 ~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l-------------~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~ 604 (785)
.+|. .+++|+.|++++|++++ +|.++..+ ++|++|++++|+++.+|.. |++++
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i--------P~sl~ 419 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI--------PESVE 419 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc--------hhhHh
Confidence 7666 35677777777777665 45555555 7899999999998877765 88888
Q ss_pred cc
Q 003936 605 SL 606 (785)
Q Consensus 605 ~l 606 (785)
.+
T Consensus 420 ~L 421 (454)
T 1jl5_A 420 DL 421 (454)
T ss_dssp --
T ss_pred he
Confidence 73
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=334.38 Aligned_cols=498 Identities=18% Similarity=0.143 Sum_probs=317.1
Q ss_pred cccceeeeecCCCccccccCCC-CCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLEG-VPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~-~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~ 92 (785)
+++++|+|++|++ ..++.. +.. ++|++|++++|.++.+|. ..+++|++|+|++|+++.+|.+ |.++++|++
T Consensus 52 ~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4789999999998 566654 444 999999999999999987 6799999999999999999754 899999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc----cEEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL----KRLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L----~~L~l 165 (785)
|+|++|.+....+ .|+.+++|++|++++|.+.. ..|..++.+++|++|++++|...+..|..+ .+.++ ..+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999998766555 48999999999999998755 568889999999999999987666556555 44443 46777
Q ss_pred cCCcCCCCCCCccc--ccccccccccccccc--ccCcchhccccccceecccccccc------ccchhhhcccccccccc
Q 003936 166 RGCSNLKNLPKMTS--CHLRSTLPLLGVGIE--ELPSSIKCLSNIGELLIYSCKRLE------NISSSIFKLQFLESIRI 235 (785)
Q Consensus 166 s~~~~l~~lp~~~~--~~L~~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~------~~~~~l~~l~~L~~L~l 235 (785)
+.|. +..++.... ..++ .+.+.+|... ..+..+..+..++...+..+.... .....+..+..+....+
T Consensus 209 s~n~-l~~i~~~~~~~~~~~-~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 209 SLNP-MNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp TTCC-CCEECTTTTTTCEEE-EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred ccCc-ccccCcccccchhhh-hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 7764 343333322 2233 5555555432 233455666766666554332211 11112222222222222
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
... .... ........+..+.+++.+...++..... ..+.....|+.|++.
T Consensus 287 ~~~-----------~~~~-----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 287 RLA-----------YLDY-----------------YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELV 336 (635)
T ss_dssp EEE-----------CCCS-----------------CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEE
T ss_pred hhh-----------hhcc-----------------cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcc
Confidence 111 0000 0011112222344555555554432211 123344556666666
Q ss_pred CcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCC
Q 003936 316 GTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNK 395 (785)
Q Consensus 316 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~ 395 (785)
++.+..++. ..++.|+.+++.++...... ....+++|+.+++++|...
T Consensus 337 ~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~---------------------------- 384 (635)
T 4g8a_A 337 NCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS---------------------------- 384 (635)
T ss_dssp SCEESSCCC--CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB----------------------------
T ss_pred cccccCcCc--ccchhhhhcccccccCCCCc--ccccccccccchhhccccc----------------------------
Confidence 666665543 23455666666665433321 2334566666666655310
Q ss_pred CCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhh-hhcccccccCCCCccC
Q 003936 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQL-ALSKLKLKKCSSFESL 472 (785)
Q Consensus 396 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l-~L~~L~l~~~~~~~~l 472 (785)
.....+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++.....+. .+..+ .++.+++++|......
T Consensus 385 --~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 385 --FKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp --EEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred --cccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 001112222333444444444443222 22233444444444444443332211 11111 1444444444444444
Q ss_pred CccccCCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQL 549 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l 549 (785)
+..+..+++|+.|++++|.... ..|..+..+++|++|+|++|.++.+ |..|.++++|++|+|++|+++.++ ..+..+
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 5555566999999999998654 5788899999999999999999988 678999999999999999999976 568999
Q ss_pred CCCCEEEcccCCCCCC-CCcCcCC-CCCCEEeCCCCCCC
Q 003936 550 SSLVSLKLSNNNLERI-PERLDPL-SSLKYLDLFENNLD 586 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~l-p~~l~~l-~~L~~L~l~~n~l~ 586 (785)
++|+.|+|++|+++++ |..+..+ ++|++|++++|++.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999999986 6678877 68999999999976
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=336.43 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=283.0
Q ss_pred CceEEEEecCCCCcccccccccCceEEEcCCCCccccc-ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n 121 (785)
...++++++++.++.+|..-.++|++|++++|.++.++ ..+..+++|++|+|++|.+....| .|..+++|++|+|++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 44588899999888888833478999999999888775 468888999999999988776666 4888889999999988
Q ss_pred cCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcc
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSS 199 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~ 199 (785)
.+. .+|.. .+++|++|++++|...+ .+|..+ ++++|++|++++|.. .. ..
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~------------------------~~ 162 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ------------------------LD 162 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT------------------------TT
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc------------------------Cc
Confidence 754 67766 78888999998876544 344566 788888888887632 11 12
Q ss_pred hhccccc--cceecccccc--ccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCC
Q 003936 200 IKCLSNI--GELLIYSCKR--LENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESL 275 (785)
Q Consensus 200 l~~l~~L--~~L~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~ 275 (785)
+..+++| ++|++++|.+ .+..+..+..+.. +.+.+ +++.|.+. ..+
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l---------~l~~n~~~--------------------~~~ 212 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHL---------VFHPNSLF--------------------SVQ 212 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEE---------EECSSSCC--------------------CCC
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCc-ceEEE---------EecCccch--------------------hhh
Confidence 2333444 7777777776 5555544443321 11111 12222221 111
Q ss_pred CC-CccCCCCCcEEecccCCC----CCCCCccccCccccceeeccCcccc-----cCCccccCccccceecccCccCCcc
Q 003936 276 PS-GQCMFKSLTSLEIIDCPN----FERLPDELGNLQALNRLIIDGTAIR-----ELPEGLGQLALLSKLELKNCSELEY 345 (785)
Q Consensus 276 ~~-~~~~l~~L~~L~l~~~~~----~~~lp~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~ 345 (785)
+. ....+++|+.|++.++.. +......+..+++|+.++++++.+. .++..+ ..++|++|++++|.+.+.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITER 291 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSC
T ss_pred hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeecc
Confidence 11 112344455555544421 1111223444555555555554433 122211 123566666666665555
Q ss_pred ccccc-----cCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC-cccc---CCCCCcEEE
Q 003936 346 ISSSI-----FKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLC---MFKSLTSLE 416 (785)
Q Consensus 346 ~~~~~-----~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~---~l~~L~~L~ 416 (785)
+|..+ ..++.|+.+++..+. + .+| ..+. ...+|+.|+
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~~~~~---------------------------------~-~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHVKNQV---------------------------------F-LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEEEECC---------------------------------C-SSCHHHHHHHHHTCCCSEEE
T ss_pred ccchhhhcccccchheehhhcccce---------------------------------e-ecChhhhhhhhccCcceEEE
Confidence 55544 222222222222221 0 111 0111 124566666
Q ss_pred eccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--
Q 003936 417 IIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM-- 494 (785)
Q Consensus 417 l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~-- 494 (785)
+++|.+..... ...+++|++|++++|.++ +.+|..+..+++|++|++++|++.+
T Consensus 338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFT----------------------DSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCC----------------------TTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred ccCCCcccccC--ccCCCCceEEECCCCccc----------------------cchhhhhcccCCCCEEECCCCCcCCcc
Confidence 66665432211 145556666666666555 3344445556999999999999876
Q ss_pred cCCCccccccccceEEecCeeccc-cCc-ccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCCCCcCcC
Q 003936 495 RLPDEIGNLEYLKVLTIKGTAIRE-VPE-SLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERIPERLDP 571 (785)
Q Consensus 495 ~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 571 (785)
.+|..+.++++|+.|++++|.++. +|. .+..+++|++|++++|++++ +|..+. ++|+.|++++|+++.+|..+..
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~ 471 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTS
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcC
Confidence 445678999999999999999997 875 47889999999999999975 555544 7999999999999999999999
Q ss_pred CCCCCEEeCCCCCCCCCccc-cccCCCCCCcccccccceeeeccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY-LRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~-~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
+++|++|++++|+++.+|+. +.. .++|+.++++-+...|
T Consensus 472 l~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 472 LQALQELNVASNQLKSVPDGVFDR-----LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SCCCSEEECCSSCCCCCCTTSTTT-----CTTCCCEECCSCCBCC
T ss_pred CCCCCEEECCCCCCCCCCHHHHhc-----CCCCCEEEecCCCcCC
Confidence 99999999999999999875 221 3566664444443333
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=309.21 Aligned_cols=374 Identities=18% Similarity=0.178 Sum_probs=236.0
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC--CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~Ls~n~~ 123 (785)
+.++.+++.++.+|. -.++|++|++++|.++.+ |..+.++++|++|+|++|.+...++ .+..+++|++|+|++|.+
T Consensus 13 ~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 346667777777776 346788888888887766 5567788888888888887654443 477788888888888776
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCc--c-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcc-
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTS--I-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSS- 199 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~--~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~- 199 (785)
.+..|..++.+++|++|++++|...+..|.. + .+++|++|++++|...... |..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~ 149 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----------------------PASF 149 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC----------------------CCGG
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC----------------------cccc
Confidence 6666777788888888888876554433332 3 5666666666665321111 222
Q ss_pred hhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCc
Q 003936 200 IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279 (785)
Q Consensus 200 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~ 279 (785)
+..+++|++|++++|.+.+..+..+..+.
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--------------------------------------------------- 178 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQ--------------------------------------------------- 178 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------------------------------------
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccc---------------------------------------------------
Confidence 45566666666666655544443332220
Q ss_pred cCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc---------ccCccccceecccCccCCccccccc
Q 003936 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG---------LGQLALLSKLELKNCSELEYISSSI 350 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~---------l~~l~~L~~L~l~~~~~~~~~~~~~ 350 (785)
..+|+.|++++|.+..++.. +..+++|++|++++|.+.+..|..+
T Consensus 179 --------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 179 --------------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp --------------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred --------------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 12344444444444433321 2244667777777777666666555
Q ss_pred cCC---CCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC
Q 003936 351 FKL---KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP 427 (785)
Q Consensus 351 ~~l---~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p 427 (785)
... ++|+.|++++|....... ..+.+.. .....-.-...++|+.|++++|.+.+..|
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSF-------GHTNFKD-------------PDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCT-------TCCSSCC-------------CCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred hccccccceeeEeecccccccccc-------chhhhcc-------------CcccccccccccCceEEEecCccccccch
Confidence 443 667777777665222110 0000000 00000000123455666666655554444
Q ss_pred cccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc
Q 003936 428 DELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK 507 (785)
Q Consensus 428 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (785)
..++.+ ++|++|++++|.+.+..|..+.++++|+
T Consensus 293 ~~~~~l----------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 293 SVFSHF----------------------------------------------TDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTTTTC----------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhcccC----------------------------------------------CCCCEEECCCCcccccChhHhcCcccCC
Confidence 444443 5666666666666666666777778888
Q ss_pred eEEecCeecccc-CcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCC
Q 003936 508 VLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENN 584 (785)
Q Consensus 508 ~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~ 584 (785)
.|++++|.++.+ |..+..+++|++|+|++|+++.+ |..+..+++|+.|++++|+++++|. .+..+++|++|++++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 888888888777 56778899999999999999886 6788999999999999999999865 45889999999999998
Q ss_pred CC
Q 003936 585 LD 586 (785)
Q Consensus 585 l~ 586 (785)
++
T Consensus 407 l~ 408 (455)
T 3v47_A 407 WD 408 (455)
T ss_dssp BC
T ss_pred cc
Confidence 65
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=310.13 Aligned_cols=376 Identities=23% Similarity=0.234 Sum_probs=238.4
Q ss_pred cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcccccc
Q 003936 81 WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKY 159 (785)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~ 159 (785)
|+.+ ..++|++|++++|.+ +.+| +++.+++|++|++++|.+.+.+|.+++.+.+|+.+++++|. ..+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~ 72 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQ 72 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHT
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccC
Confidence 3334 358999999999987 6777 69999999999999999888999999999999988888764 256
Q ss_pred ccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCC
Q 003936 160 LKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (785)
+++|++++|. ++.+|... .+++ .+++++|.++.+|.. .++|++|++++|.+.+
T Consensus 73 l~~L~l~~~~-l~~lp~~~-~~L~-~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~--------------------- 125 (454)
T 1jl5_A 73 AHELELNNLG-LSSLPELP-PHLE-SLVASCNSLTELPEL---PQSLKSLLVDNNNLKA--------------------- 125 (454)
T ss_dssp CSEEECTTSC-CSCCCSCC-TTCS-EEECCSSCCSSCCCC---CTTCCEEECCSSCCSC---------------------
T ss_pred CCEEEecCCc-cccCCCCc-CCCC-EEEccCCcCCccccc---cCCCcEEECCCCccCc---------------------
Confidence 8888888874 55555532 3445 555555555555532 2444555554443322
Q ss_pred CCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCccc
Q 003936 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAI 319 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 319 (785)
. +.. .++|++|++.+|... .+| .++++++|++|++++|++
T Consensus 126 --------------l---------------------~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 126 --------------L---------------------SDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp --------------C---------------------CSC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred --------------c---------------------cCC---CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcC
Confidence 1 000 135555555555433 355 477777788888888777
Q ss_pred ccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCC
Q 003936 320 RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399 (785)
Q Consensus 320 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l 399 (785)
+.+|..+ ++|++|++++|.+.+ +| .+.++++|+.|++++|. +++
T Consensus 166 ~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~-l~~------------------------------ 209 (454)
T 1jl5_A 166 KKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS-LKK------------------------------ 209 (454)
T ss_dssp SCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSS------------------------------
T ss_pred cccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc-CCc------------------------------
Confidence 7776543 477788888776655 45 46777777777777764 111
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
+|.. .++|+.|++++|.+. .+|. ++.+++|++|++++|.++.+|... ..++.|++++|...+ +|.. .
T Consensus 210 --l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 210 --LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp --CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC---C
T ss_pred --CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc---c
Confidence 1211 136666666666554 4553 666666666666666666665432 236666666665433 4432 2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|++|++++|.+.+. |.. .++|+.|++++|.++.++.. .++|++|++++|+++++|.. +++|+.|++++
T Consensus 277 ~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASF 346 (454)
T ss_dssp TTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCC
Confidence 7899999999998762 211 26899999999999987642 25899999999999998875 58999999999
Q ss_pred CCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCccccc
Q 003936 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTS 605 (785)
Q Consensus 560 n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~ 605 (785)
|+++++|. .+++|++|++++|+++.+|.. |.++..
T Consensus 347 N~l~~lp~---~l~~L~~L~L~~N~l~~l~~i--------p~~l~~ 381 (454)
T 1jl5_A 347 NHLAEVPE---LPQNLKQLHVEYNPLREFPDI--------PESVED 381 (454)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSSCCCC--------CTTCCE
T ss_pred Cccccccc---hhhhccEEECCCCCCCcCCCC--------hHHHHh
Confidence 99999998 478999999999999887765 666655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=307.99 Aligned_cols=219 Identities=24% Similarity=0.360 Sum_probs=151.7
Q ss_pred CccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCc
Q 003936 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIE 384 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~ 384 (785)
++++|++|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~------------------- 232 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ------------------- 232 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-------------------
T ss_pred cCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-------------------
Confidence 34444555555554444432 4455555555555555444333 4445556666655553
Q ss_pred ccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccc
Q 003936 385 RIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLK 464 (785)
Q Consensus 385 ~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~ 464 (785)
+..+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+
T Consensus 233 --------------l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l-------- 286 (466)
T 1o6v_A 233 --------------LKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGL-------- 286 (466)
T ss_dssp --------------CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTC--------
T ss_pred --------------cccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCC--------
Confidence 1111 134556677777777776655433 6677777777777777776554 2222
Q ss_pred cCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc
Q 003936 465 KCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE 544 (785)
Q Consensus 465 ~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 544 (785)
++|+.|++++|++.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++
T Consensus 287 ---------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 287 ---------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp ---------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred ---------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-
Confidence 788888888888766443 6788889999999998888765 788999999999999998874
Q ss_pred cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
.+..+++|+.|++++|+++++++ +..+++|+.|++++|+++.+|..
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 68899999999999999998755 88999999999999998877654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=297.02 Aligned_cols=347 Identities=21% Similarity=0.313 Sum_probs=231.7
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++++.|+++++.++.+|. ..+++|++|++++|.++.++. +..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 678888888888888888 888899999999998888876 8888999999999887655444 8888899999999887
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
+.. ++. +..+++|++|++++|. +..++....+++|++|+++++ +.. ++ .+.+
T Consensus 124 l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~----------------------~~-~~~~ 175 (466)
T 1o6v_A 124 ITD-IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTD----------------------LK-PLAN 175 (466)
T ss_dssp CCC-CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCC----------------------CG-GGTT
T ss_pred CCC-ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccC----------------------ch-hhcc
Confidence 544 343 8888999999998865 344554337777887777531 111 11 1455
Q ss_pred cccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l 282 (785)
+++|+.|++++|.+... +
T Consensus 176 l~~L~~L~l~~n~l~~~-~------------------------------------------------------------- 193 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI-S------------------------------------------------------------- 193 (466)
T ss_dssp CTTCCEEECCSSCCCCC-G-------------------------------------------------------------
T ss_pred CCCCCEEECcCCcCCCC-h-------------------------------------------------------------
Confidence 56666666666643321 0
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
.+..+++|++|++++|.+..++. ++.+++|++|++++|.+.+. ..+..+++|+.|+++
T Consensus 194 -------------------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 194 -------------------VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp -------------------GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred -------------------hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 12223334444444444443332 33444444444444443321 123444455555554
Q ss_pred CCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhcc
Q 003936 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVE 442 (785)
Q Consensus 363 ~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~ 442 (785)
+|. +..++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 252 ~n~---------------------------------l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 252 NNQ---------------------------------ISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp SSC---------------------------------CCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCc---------------------------------cccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 442 111111 4455666666666665554332 5666777777777
Q ss_pred CccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc
Q 003936 443 GTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES 522 (785)
Q Consensus 443 ~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 522 (785)
+|.++.++. +..+ ++|+.|++++|++.+..| +..+++|+.|++++|.++.++ .
T Consensus 296 ~n~l~~~~~-~~~l-----------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~ 348 (466)
T 1o6v_A 296 ENQLEDISP-ISNL-----------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-S 348 (466)
T ss_dssp SSCCSCCGG-GGGC-----------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-G
T ss_pred CCcccCchh-hcCC-----------------------CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-h
Confidence 777666543 2222 788888888888776655 678888999999999888874 5
Q ss_pred cCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCc
Q 003936 523 LGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 523 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 568 (785)
+..+++|+.|++++|++++++. +..+++|+.|++++|+++.+|..
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 8889999999999999988665 88999999999999999988764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=290.67 Aligned_cols=370 Identities=16% Similarity=0.131 Sum_probs=279.6
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcc-cc-cccccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVT-QL-WDDVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~Ls 96 (785)
+.++.+++.+ ..+|. +. ++|++|++++|.++.++. ..+++|++|++++|.+. .+ +..+..+++|++|+|+
T Consensus 13 ~~~~c~~~~l---~~lp~-l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGL---HQVPE-LP-AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCC---SSCCC-CC-TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCc---ccCCC-CC-CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3455566555 55666 22 789999999999987743 78999999999999886 55 4558899999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccc--cccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCcCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSS--IQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~~l 171 (785)
+|.+....| .+..+++|++|++++|.+.+..+.. ++.+++|++|++++|...+..|.. + ++++|++|++++|...
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 998777766 5889999999999999877656555 889999999999998776666765 4 8899999999998655
Q ss_pred CCCCCccc----cccccccccccccccccCcc---------hhccccccceeccccccccccchhhhcc---cccccccc
Q 003936 172 KNLPKMTS----CHLRSTLPLLGVGIEELPSS---------IKCLSNIGELLIYSCKRLENISSSIFKL---QFLESIRI 235 (785)
Q Consensus 172 ~~lp~~~~----~~L~~~L~l~~~~i~~lp~~---------l~~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l 235 (785)
...|.... ..++ .++++++.+..++.. +..+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccChhhhhcccccccc-ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 54444332 4666 888888888877643 3466899999999999998888777655 66666666
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCcc--CCCCCcEEecccCCCCCCCCccccCccccceee
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC--MFKSLTSLEIIDCPNFERLPDELGNLQALNRLI 313 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 313 (785)
+++..... .+..+.+. ...+..+. ..++|+.|++.+|...+..|..+..+++|++|+
T Consensus 247 ~~~~~~~~-~~~~~~~~--------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 247 SNSYNMGS-SFGHTNFK--------------------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305 (455)
T ss_dssp TTCTTTSC-CTTCCSSC--------------------CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccc-ccchhhhc--------------------cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence 65532211 11111110 11111111 246899999999888888888899999999999
Q ss_pred ccCcccccC-CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccc
Q 003936 314 IDGTAIREL-PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLK 392 (785)
Q Consensus 314 L~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~ 392 (785)
+++|.++.+ |..++.+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------------------------- 358 (455)
T 3v47_A 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH--------------------------- 358 (455)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC---------------------------
T ss_pred CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc---------------------------
Confidence 999999866 4468889999999999998877778888889999999998885
Q ss_pred cCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccC
Q 003936 393 LNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVP 450 (785)
Q Consensus 393 l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp 450 (785)
.....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ ..|
T Consensus 359 -----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 -----IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 11123556778899999999999888766667888999999999999988 444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=293.01 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=137.9
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++|++|++++|.++.+|. ..+++|++|++++|.++.++ +..+++|++|++++|.+.. ++ ++.+++|++|++++|.
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCCc
Confidence 667777777777777766 77777777777777777764 6777777777777776544 33 7777777777777776
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
+.+ ++ ++.+++|++|++++|...+ ++ ...+++|++|++++|..++.++ ++.
T Consensus 118 l~~-l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~------------------------~~~ 168 (457)
T 3bz5_A 118 LTK-LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLD------------------------VTP 168 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCC------------------------CTT
T ss_pred CCe-ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccc------------------------ccc
Confidence 544 33 7777777777777754333 43 1267777777777775444331 344
Q ss_pred cccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l 282 (785)
+++|+.|++++|.+.+ ++ +..+++|+.+++++|.+++.
T Consensus 169 l~~L~~L~ls~n~l~~-l~-------------l~~l~~L~~L~l~~N~l~~~---------------------------- 206 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD-------------VSQNKLLNRLNCDTNNITKL---------------------------- 206 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC-------------CTTCTTCCEEECCSSCCSCC----------------------------
T ss_pred CCcCCEEECCCCccce-ec-------------cccCCCCCEEECcCCcCCee----------------------------
Confidence 5566666666665433 11 22333333333333333211
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
.++.+++|++|++++|+++.+| ++.+++|++|++++|.+.+.. ...+++|+.|+++
T Consensus 207 -------------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 207 -------------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCI 262 (457)
T ss_dssp -------------------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECT
T ss_pred -------------------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEecc
Confidence 1445566777777777777766 666777777777777655532 3455666666655
Q ss_pred CC
Q 003936 363 NC 364 (785)
Q Consensus 363 ~~ 364 (785)
++
T Consensus 263 ~n 264 (457)
T 3bz5_A 263 QT 264 (457)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=287.74 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=63.7
Q ss_pred ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEe
Q 003936 62 LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
..+++|++|++++|.++.+| ++..+++|++|+|++|.+.. +| ++.+++|++|++++|.+.+ ++ ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 55677777777777777765 57777777777777776544 33 6777777777777776444 32 66777777777
Q ss_pred cCCCCCCCcCCCccccccccEEeccCC
Q 003936 142 LDRCKSLTSLPTSIHSKYLKRLVLRGC 168 (785)
Q Consensus 142 L~~~~~~~~~p~~~~l~~L~~L~ls~~ 168 (785)
+++|.. +.+| ...+++|++|++++|
T Consensus 113 L~~N~l-~~l~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 113 CDTNKL-TKLD-VSQNPLLTYLNCARN 137 (457)
T ss_dssp CCSSCC-SCCC-CTTCTTCCEEECTTS
T ss_pred CCCCcC-Ceec-CCCCCcCCEEECCCC
Confidence 777533 3333 115555666655554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=271.44 Aligned_cols=103 Identities=29% Similarity=0.352 Sum_probs=80.0
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLS 558 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 558 (785)
++|++|++++|.+... ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.. |..++.+++|+.|+++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 5666666666655442 34667778888888888888774 478889999999999999874 5668899999999999
Q ss_pred cCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 559 NNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 559 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|+++.+++ +..+++|++|++++|+++
T Consensus 320 ~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCccccccC-hhhhhccceeehhhhccc
Confidence 999998765 888999999999999875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=269.60 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++|++|+++++.+..++. ..+++|++|++++|.++.++. +..+++|++|++++|.+. .++.+..+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcCCc
Confidence 455555555555555555 555556666666655555544 555555556655555432 23445555555555555554
Q ss_pred CccccccccccCCcccEEecCCCCCCC
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLT 149 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~ 149 (785)
+.. ++. +..+++|++|++++|....
T Consensus 122 i~~-~~~-~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 122 ISD-ISP-LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp CCC-CGG-GTTCTTCCEEECTTCTTCC
T ss_pred ccC-chh-hccCCceeEEECCCCCCcc
Confidence 322 222 4455555555555544333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=279.79 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
++|+.|++++|.+.+..+..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+++.+|. .+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 5666666666666655556666777777777777777766 5667777777888888887777664 4677778888888
Q ss_pred ccCCCCC
Q 003936 558 SNNNLER 564 (785)
Q Consensus 558 ~~n~l~~ 564 (785)
++|.+..
T Consensus 328 ~~N~l~c 334 (477)
T 2id5_A 328 DSNPLAC 334 (477)
T ss_dssp CSSCEEC
T ss_pred cCCCccC
Confidence 8887763
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=277.10 Aligned_cols=108 Identities=27% Similarity=0.337 Sum_probs=87.3
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 557 (785)
.+|+.|++++|.+....+..+..+++|+.|+|++|.++.++ ..+..+++|++|+|++|+++.+ |..+..+++|+.|+|
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 46667777777665443356778899999999999998874 5688899999999999999885 577889999999999
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 587 (785)
++|+++.+|. .+..+++|+.|++++|++..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999998765 46788999999999998654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=269.32 Aligned_cols=260 Identities=20% Similarity=0.205 Sum_probs=151.5
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
+++|++|++.+|...+..|..+.++++|++|++++|.++.+|.. ++.+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 44444444444443344455577788888888888888877766 47788888888888877776677777788888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..+ .+..+++|+.|++++|.+.+ +...++|++|+
T Consensus 172 l~~n~---------------------------------l~~~--~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~ 211 (390)
T 3o6n_A 172 LSSNR---------------------------------LTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211 (390)
T ss_dssp CCSSC---------------------------------CSBC--CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred CCCCc---------------------------------CCcc--ccccccccceeecccccccc-----cCCCCcceEEE
Confidence 87774 1111 13345666666666665433 22234566666
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 520 (785)
+++|.++.+|.... ..++.|++++|...+. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|
T Consensus 212 l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 212 ASHNSINVVRGPVN-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp CCSSCCCEEECCCC-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred CCCCeeeecccccc-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence 66666665543221 1233333333332221 22333455666666666555555555555666666666666665555
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+| +..+++|+.|++++|+++
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 5555555666666666665555555555556666666666655554 445555666666665543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=277.57 Aligned_cols=260 Identities=20% Similarity=0.201 Sum_probs=165.9
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
+++|+.|++.+|...+..|..|+++++|++|++++|.++.+|.. |+.+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 44444444444443344455577788888888888888877765 57788888888888887777777778888888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..++ +..+++|+.|++++|.+.+ +...++|+.|+
T Consensus 178 L~~N~---------------------------------l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 178 LSSNR---------------------------------LTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTSC---------------------------------CSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CcCCC---------------------------------CCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 87774 11111 3355667777777765443 23345677777
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 520 (785)
+++|.++.++..+. ..|+.|++++|...+ +..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.++.+|
T Consensus 218 ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 294 (597)
T 3oja_B 218 ASHNSINVVRGPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294 (597)
T ss_dssp CCSSCCCEEECSCC-SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE
T ss_pred ccCCcccccccccC-CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC
Confidence 77777665554322 234444444444333 233444566777777776666666666666666777777776666666
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++.+| +..+++|+.|++++|++.
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 6666666677777777766666666666666777777776666664 455666666776666643
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=262.40 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=66.3
Q ss_pred ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccE
Q 003936 62 LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEV 139 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~ 139 (785)
..+.++++|+++++.++.+|.. +..+++|++|+|++|.+....+ .+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4456666666666666666654 4666667777776666554444 4666667777777766655555556666777777
Q ss_pred EecCCCCCCCcCCCcc--ccccccEEeccCC
Q 003936 140 LDLDRCKSLTSLPTSI--HSKYLKRLVLRGC 168 (785)
Q Consensus 140 L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~ 168 (785)
|++++|. ++.+|..+ .+++|++|++++|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCC
Confidence 7777653 33455443 5666777666665
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=272.28 Aligned_cols=82 Identities=26% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|+.|++++|.+.+ +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| +..+++|+.|++++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 555666666655544 344455677788888888888888877888888888888888888775 66778888888888
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|.+..
T Consensus 355 N~~~~ 359 (597)
T 3oja_B 355 NDWDC 359 (597)
T ss_dssp SCEEH
T ss_pred CCCCC
Confidence 88763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=242.59 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=86.0
Q ss_pred ccCCCCCcEEEeccccCC--CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 406 LCMFKSLTSLEIIDCKKL--ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
+..+++|+.|++++|.+. +..+..+..+ +|+.|++++|.++.+|..+. ++|+
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-------------------------~~L~ 196 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-------------------------ETLN 196 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-------------------------SSCS
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc-------------------------CCCC
Confidence 456666667777666653 2455556555 67777777777666664432 3455
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 562 (785)
+|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC
Confidence 5555555555544455555555555555555555543 245555555555555555555555555555555555555555
Q ss_pred CCCCC-cCcC------CCCCCEEeCCCCCCC
Q 003936 563 ERIPE-RLDP------LSSLKYLDLFENNLD 586 (785)
Q Consensus 563 ~~lp~-~l~~------l~~L~~L~l~~n~l~ 586 (785)
+.+|. .+.. ..+|+.|++++|++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccChhHccccccccccccccceEeecCccc
Confidence 55432 1221 244555555555543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-27 Score=248.08 Aligned_cols=250 Identities=20% Similarity=0.288 Sum_probs=177.3
Q ss_pred CCCcEEecccCCCCC--CCCccccCccccceeeccC-cccc-cCCccccCccccceecccCccCCccccccccCCCCCCE
Q 003936 283 KSLTSLEIIDCPNFE--RLPDELGNLQALNRLIIDG-TAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVES 358 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 358 (785)
.+++.|++.++...+ .+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666555 5666666677777777764 5555 55666666677777777776666666666666666666
Q ss_pred EEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcc-cch
Q 003936 359 IEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLE-ALE 437 (785)
Q Consensus 359 L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~ 437 (785)
|++++|. ....+|..+..+++|+.|++++|.+.+.+|..+..++ +|+
T Consensus 130 L~Ls~N~--------------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 130 LDFSYNA--------------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp EECCSSE--------------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred EeCCCCc--------------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 6666653 1113445566666666666666666666666666665 666
Q ss_pred hhhccCcccc-ccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec
Q 003936 438 ELRVEGTGIR-EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI 516 (785)
Q Consensus 438 ~L~L~~n~i~-~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 516 (785)
.|++++|.++ .+|..+..+ + |++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l-----------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANL-----------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EEECCSSEEEEECCGGGGGC-----------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EEECcCCeeeccCChHHhCC-----------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6666666665 445444433 5 88888888888888888888888888888888888
Q ss_pred cccCcccCCCCCCcEEEccCCccc-cccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCC-CCCCc
Q 003936 517 REVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENN-LDRIP 589 (785)
Q Consensus 517 ~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~-l~~lp 589 (785)
+..++.+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +|.. ..+++|+.|++++|+ +...|
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 866555788888888888888888 478888888888888888888884 6665 778888888888887 65433
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=237.44 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=103.6
Q ss_pred ccCCCCCcEEEeccccCCC--cCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 406 LCMFKSLTSLEIIDCKKLE--RLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|..+. ++|+
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------------------~~L~ 195 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-------------------------PSLT 195 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-------------------------TTCS
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-------------------------ccCC
Confidence 4556666666666666532 445556666666666666666665554321 5677
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 562 (785)
+|++++|.+.+..|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 7777777776666667777777777777777777664 356777777777777777777777777777777777777777
Q ss_pred CCCCCc-Cc------CCCCCCEEeCCCCCCC
Q 003936 563 ERIPER-LD------PLSSLKYLDLFENNLD 586 (785)
Q Consensus 563 ~~lp~~-l~------~l~~L~~L~l~~n~l~ 586 (785)
+.+|.. +. ..+.|+.|++++|+++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CccChhhcCCcccccccccccceEeecCccc
Confidence 766432 22 2356777777777765
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=233.66 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=168.1
Q ss_pred cccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEe
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRID 94 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 94 (785)
.+|+.++++++.+ ..+|..+. +.+++|++++|.++.++. ..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l---~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGL---EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCC---CSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCc---cccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3566666666555 44554433 566667777776666654 5566677777777766655 55566677777777
Q ss_pred cCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCcc-ccccccEEeccCCcC
Q 003936 95 LKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSI-HSKYLKRLVLRGCSN 170 (785)
Q Consensus 95 Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~-~l~~L~~L~ls~~~~ 170 (785)
|++|.+. .+| .+. ++|++|++++|.+....+..++.+++|++|++++|.... ..+..+ ++++|++|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-
Confidence 7766644 333 232 567777777766555555556666777777776655432 334444 56666666666652
Q ss_pred CCCCCCcccccccccccccccccccc-CcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCc
Q 003936 171 LKNLPKMTSCHLRSTLPLLGVGIEEL-PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSC 249 (785)
Q Consensus 171 l~~lp~~~~~~L~~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n 249 (785)
++.+|.....+|+ .+++++|.+..+ |..+..+++|+.|++++|.+.+..+..+
T Consensus 183 l~~l~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------- 236 (330)
T 1xku_A 183 ITTIPQGLPPSLT-ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL------------------------- 236 (330)
T ss_dssp CCSCCSSCCTTCS-EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-------------------------
T ss_pred cccCCccccccCC-EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc-------------------------
Confidence 3444443334444 444444444433 2334444444444444444433333233
Q ss_pred ccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-cc-
Q 003936 250 NIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LG- 327 (785)
Q Consensus 250 ~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~- 327 (785)
..+++|+.|++.+|. +..+|..+..+++|++|++++|.++.++.. +.
T Consensus 237 ------------------------------~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 237 ------------------------------ANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ------------------------------GGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ------------------------------cCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 334555555555553 346677788888899999999998877653 32
Q ss_pred -----CccccceecccCccCCc--cccccccCCCCCCEEEeeCCC
Q 003936 328 -----QLALLSKLELKNCSELE--YISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 328 -----~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 365 (785)
..+.|+.|++++|+... ..|..+..+.+++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 24678889999988753 456677778888888888763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=234.42 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=149.6
Q ss_pred ccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEec
Q 003936 20 ELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDL 95 (785)
Q Consensus 20 ~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L 95 (785)
+|+.++++++.+ ..+|..+. ++|++|++++|.++.++. ..+++|++|++++|.++.+ |..+..+++|++|+|
T Consensus 34 ~l~~l~~~~~~l---~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL---KAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC---SSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc---cccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 445555554444 33343332 345555555555544432 4445555555555555444 334455555555555
Q ss_pred CCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCcc-ccccccEEeccCCcCC
Q 003936 96 KYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSI-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 96 s~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~-~l~~L~~L~ls~~~~l 171 (785)
++|.+. .+| .+. ++|++|++++|.+....+..++.+++|++|++++|.... ..|..+ .+ +|+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~---------- 175 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN---------- 175 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS----------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC----------
Confidence 555433 222 222 445555555554333333334455555555555543321 222222 22 444
Q ss_pred CCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCccc
Q 003936 172 KNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNI 251 (785)
Q Consensus 172 ~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~ 251 (785)
.+++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++ |.+
T Consensus 176 -------------~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-----------N~l 229 (332)
T 2ft3_A 176 -------------YLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-----------NQI 229 (332)
T ss_dssp -------------CCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-----------SCC
T ss_pred -------------EEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-----------CcC
Confidence 45555555555554433 4566666666655554444444444444333333 222
Q ss_pred CCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccC--
Q 003936 252 DGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQ-- 328 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~-- 328 (785)
.+ ..+..+..+++|+.|++.+|.. ..+|..+..+++|++|++++|.++.++.. +..
T Consensus 230 ~~--------------------~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 230 RM--------------------IENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp CC--------------------CCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred Cc--------------------CChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 11 1122334456666666666643 46777888899999999999999977653 332
Q ss_pred ----ccccceecccCccCC--ccccccccCCCCCCEEEeeCCC
Q 003936 329 ----LALLSKLELKNCSEL--EYISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 329 ----l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 365 (785)
.++|+.|++++|+.. +..|..+..+++|+.+++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467899999999876 5667778889999999998875
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-28 Score=273.32 Aligned_cols=107 Identities=27% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccccceEEecCeecccc-Cc----ccCC-CCCCcEEEccCCccc-----cccc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIREV-PE----SLGQ-LSSLEWLVLSDNNLQ-----IIPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~l-p~----~~~~-l~~L~~L~Ls~n~l~-----~lp~ 544 (785)
++|++|++++|.+.+. ++..+..+++|++|++++|.++.. +. .+.. .++|++|++++|.++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4666666666665543 344555667777777777776643 22 2222 568888888888887 4777
Q ss_pred cccCCCCCCEEEcccCCCCCC-----CCcC-cCCCCCCEEeCCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERI-----PERL-DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~l-----p~~l-~~l~~L~~L~l~~n~l~ 586 (785)
.+..+++|+.|++++|+++.. ...+ ....+|+.|++.++...
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 788888888888888888742 1112 22456888888877654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=234.46 Aligned_cols=225 Identities=24% Similarity=0.384 Sum_probs=147.5
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
++++.|++++|.++.+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~--------------------- 138 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP--------------------- 138 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC---------------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc---------------------
Confidence 5667777777777777777777777777777777665 666667777777777777763
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC---------cccchhhhccCccccccChhhhhhh
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN---------LEALEELRVEGTGIREVPKSLAQLA 457 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------l~~L~~L~L~~n~i~~lp~~~~~l~ 457 (785)
+..+|..+..+++|+.|++++|...+.+|..+.. +++|++|++++|.++.+|..+..+
T Consensus 139 ------------l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l- 205 (328)
T 4fcg_A 139 ------------LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL- 205 (328)
T ss_dssp ------------CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC-
T ss_pred ------------cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC-
Confidence 3345566677777777777777777777765543 666666666666666555554444
Q ss_pred hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccC
Q 003936 458 LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSD 536 (785)
Q Consensus 458 L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~ 536 (785)
++|++|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+++|++|+|++
T Consensus 206 ----------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 206 ----------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp ----------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred ----------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 666666666666553 4445666666666666665443 4466666677777777777
Q ss_pred Ccccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 537 NNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 537 n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
|++.+ +|..++.+++|+.|+|++|++.+ +|+.+.++++|+.+++..+.+..++
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 65543 66667777777777777766543 6777777777777777666555444
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-28 Score=271.67 Aligned_cols=161 Identities=24% Similarity=0.139 Sum_probs=113.7
Q ss_pred ccccCCCCCcEEEeccccCCCcC-----CcccCCcccchhhhccCccccc-----cChhhhhhhhcccccccCCCCccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERL-----PDELGNLEALEELRVEGTGIRE-----VPKSLAQLALSKLKLKKCSSFESLP 473 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~L~~L~l~~~~~~~~lp 473 (785)
..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++. ++..+..+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~----------------- 283 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK----------------- 283 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-----------------
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-----------------
Confidence 34445566666666666543321 1222345667777777776664 44444443
Q ss_pred ccccCCCCCCEEEeeCCcCcccCCCccc-----cccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCccccc-
Q 003936 474 SRLYVSKSLTSLEIIDCKNFMRLPDEIG-----NLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQII- 542 (785)
Q Consensus 474 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~l- 542 (785)
++|++|++++|.+....+..+. ..++|+.|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 284 ------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 284 ------ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp ------TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred ------CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 7888888888877543333232 23699999999999884 466778889999999999998763
Q ss_pred c----ccccC-CCCCCEEEcccCCCC-----CCCCcCcCCCCCCEEeCCCCCCCC
Q 003936 543 P----ESLNQ-LSSLVSLKLSNNNLE-----RIPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 543 p----~~l~~-l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
+ ..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 2 33332 789999999999998 578888899999999999999874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-26 Score=236.68 Aligned_cols=229 Identities=23% Similarity=0.317 Sum_probs=199.0
Q ss_pred cccceeeccCcccc---cCCccccCccccceecccC-ccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 307 QALNRLIIDGTAIR---ELPEGLGQLALLSKLELKN-CSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 307 ~~L~~L~L~~n~i~---~lp~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
.+++.|+++++.++ .+|..++.+++|++|++++ |.+.+.+|..+.++++|++|++++|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----------------- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----------------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence 46889999999988 5888899999999999995 78888888888889999999998874
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhhhccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLALSKL 461 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~L~~L 461 (785)
....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 113 ---------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l----- 172 (313)
T 1ogq_A 113 ---------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF----- 172 (313)
T ss_dssp ---------------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----
T ss_pred ---------------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-----
Confidence 11256677888889999999999888888888888889999999888887 677666554
Q ss_pred ccccCCCCccCCccccCCC-CCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcc
Q 003936 462 KLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNL 539 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l 539 (785)
+ +|++|++++|.+.+.+|..+..+. |+.|++++|.++.. |..+..+++|+.|++++|.+
T Consensus 173 ------------------~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 173 ------------------SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------------CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------------hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6 999999999999999999999987 99999999999854 77899999999999999999
Q ss_pred ccccccccCCCCCCEEEcccCCCC-CCCCcCcCCCCCCEEeCCCCCCC-CCccc
Q 003936 540 QIIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPEY 591 (785)
Q Consensus 540 ~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~lp~~ 591 (785)
+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|+.
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 986666899999999999999998 58999999999999999999976 66654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-27 Score=269.26 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=115.7
Q ss_pred CCCCCcEEecCCCccccCCC-CCcc-cc-ccceeccccccCcc--ccccccccCCcccEEecCCCCCCCc----CCCcc-
Q 003936 86 NLVSLKRIDLKYSKLLTKLP-DLSL-AQ-NLEILDLGYCSSLT--ETHSSIQYLNKLEVLDLDRCKSLTS----LPTSI- 155 (785)
Q Consensus 86 ~l~~L~~L~Ls~n~~~~~~~-~l~~-l~-~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~----~p~~~- 155 (785)
.+++|++|+|++|.+....+ .+.. ++ +|++|+|++|.... .++.....+++|++|+|++|..... ++...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56666666666664332222 2333 22 36666666664211 1222234566666666666543222 11112
Q ss_pred ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccc
Q 003936 156 HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235 (785)
Q Consensus 156 ~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 235 (785)
.+++|++|++++|..- . .....++..+.++++|++|++++|.+.+ ++..+..+++|+.|++
T Consensus 190 ~~~~L~~L~L~~n~~~-~-----------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFA-K-----------------ISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HCCCCCEEECTTCCCS-S-----------------CCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred cCCCccEEEeeccCCC-c-----------------cCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence 4556666666554210 0 0112344456677888888888876654 5566777777777776
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
+.+..... ....+..+..+++|+.|.+.++ ....+|..+..+++|++|+++
T Consensus 251 ~~~~~~~~----------------------------~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 251 GSLNEDIG----------------------------MPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CBCCCCTT----------------------------CTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred cccccccc----------------------------hHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence 64211100 0111222334556666666553 223455555566666666666
Q ss_pred Ccccc--cCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 316 GTAIR--ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 316 ~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
+|.++ .++..++.+++|++|+++++-..+.++.....+++|++|+++
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 66544 122224556666666666332222333333445666666666
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=228.33 Aligned_cols=235 Identities=23% Similarity=0.330 Sum_probs=198.5
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
..+++.|++.++.. ..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57899999998765 48888899999999999999999999999999999999999999877 78999999999999999
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhc
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L 441 (785)
++|..+..+|.- +.. ..++..+..+++|+.|++++|.+. .+|..++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~----------------~~~-------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 158 RACPELTELPEP----------------LAS-------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp EEETTCCCCCSC----------------SEE-------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred CCCCCccccChh----------------Hhh-------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 998755554421 000 012233556999999999999876 88999999999999999
Q ss_pred cCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec-cccC
Q 003936 442 EGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI-REVP 520 (785)
Q Consensus 442 ~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp 520 (785)
++|.++.+|..+..+ ++|++|++++|.+.+.+|..++.+++|+.|++++|.+ +.+|
T Consensus 214 ~~N~l~~l~~~l~~l-----------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 214 RNSPLSALGPAIHHL-----------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ESSCCCCCCGGGGGC-----------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred cCCCCCcCchhhccC-----------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 999999988776666 8899999999999888898899999999999998655 4678
Q ss_pred cccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
..+..+++|++|+|++|++.+ +|..++.+++|+.+++..+.+..+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 889999999999999987664 899999999999999988766544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=222.40 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=147.9
Q ss_pred ccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCcccc-ccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 301 DELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYIS-SSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 301 ~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
..+.++++|++|++++|.++.+|.. ++.+++|++|++++|.+.+..+ ..+..+++|+.|++++|..++.+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------- 165 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------- 165 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------
Confidence 3455666777777777777777665 6677777777777776554322 35666777777777776422211
Q ss_pred CCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhh
Q 003936 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLAL 458 (785)
Q Consensus 379 ~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L 458 (785)
.+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.+|..+...
T Consensus 166 -----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-- 220 (353)
T 2z80_A 166 -----------------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-- 220 (353)
T ss_dssp -----------------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--
T ss_pred -----------------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh--
Confidence 1234667788888888888887777888888888888888888887776544321
Q ss_pred cccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCc
Q 003936 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNN 538 (785)
Q Consensus 459 ~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 538 (785)
+++|+.|++++|.+.+..+..+.. ....+.++.++++++.
T Consensus 221 --------------------~~~L~~L~L~~n~l~~~~~~~l~~--------------------~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 221 --------------------TSSVECLELRDTDLDTFHFSELST--------------------GETNSLIKKFTFRNVK 260 (353)
T ss_dssp --------------------TTTEEEEEEESCBCTTCCCC--------------------------CCCCCCEEEEESCB
T ss_pred --------------------cccccEEECCCCcccccccccccc--------------------ccccchhhcccccccc
Confidence 167777777777665543322211 1234456666666666
Q ss_pred cc-----cccccccCCCCCCEEEcccCCCCCCCCcC-cCCCCCCEEeCCCCCCCCC
Q 003936 539 LQ-----IIPESLNQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 539 l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~l 588 (785)
+. .+|..+..+++|+.|++++|+++.+|..+ ..+++|++|++++|++..-
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 54 47888899999999999999999998875 8899999999999996643
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=217.53 Aligned_cols=233 Identities=23% Similarity=0.290 Sum_probs=143.9
Q ss_pred CCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCc--cccccccCCCCCCEEEeeCCCCCCCCCCC
Q 003936 297 ERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELE--YISSSIFKLKSVESIEISNCSNLKGFPEI 373 (785)
Q Consensus 297 ~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~l 373 (785)
+.+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 20 ~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------- 89 (306)
T 2z66_A 20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------- 89 (306)
T ss_dssp SSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS--------
T ss_pred ccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc--------
Confidence 4445433 24677777777777776654 5677777777777766542 224455556666666666653
Q ss_pred ceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCccccccChh
Q 003936 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGTGIREVPKS 452 (785)
Q Consensus 374 ~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~ 452 (785)
+..+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.++
T Consensus 90 -------------------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 142 (306)
T 2z66_A 90 -------------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-- 142 (306)
T ss_dssp -------------------------EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--
T ss_pred -------------------------cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--
Confidence 23344445566666666666665544433 34555666666666666555332
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCc
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLE 530 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~ 530 (785)
+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ |..+..+++|+
T Consensus 143 --------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 143 --------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp --------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --------------------hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 1222233667777777776655 4566667777777777777777666 55666777777
Q ss_pred EEEccCCccccccc-cccCCCCCCEEEcccCCCCC-CCCcCcCCC-CCCEEeCCCCCCC
Q 003936 531 WLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER-IPERLDPLS-SLKYLDLFENNLD 586 (785)
Q Consensus 531 ~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~-~L~~L~l~~n~l~ 586 (785)
+|++++|.++.++. .+..+++|+.|++++|++++ .|..+..++ +|++|++++|+++
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 77777777776553 46667777777777777766 355566663 6777777777654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=229.78 Aligned_cols=138 Identities=30% Similarity=0.317 Sum_probs=96.5
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++|+.|++++|.+.+ +| ..+++|+.|++++|.++.+|..+ ++|+.|++++
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~~--------------------------~~L~~L~L~~ 210 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTLP--------------------------SELYKLWAYN 210 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCC--------------------------TTCCEEECCS
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCcc--------------------------chhhEEECcC
Confidence 455556666655433 33 23455666666666666555321 5677777777
Q ss_pred CcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERL 569 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 569 (785)
|.+.. +|. .+++|+.|++++|.++.+| ..+++|+.|++++|+++.+|. .+++|+.|+|++|+++.+|..+
T Consensus 211 N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 211 NRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp SCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred Ccccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 76553 332 2467888888888888877 456788888888888888877 5678888888888888888888
Q ss_pred cCCCCCCEEeCCCCCCCC
Q 003936 570 DPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~~ 587 (785)
..+++|+.|++++|+++.
T Consensus 281 ~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp GGSCTTCEEECCSCCCCH
T ss_pred hhccccCEEEecCCCCCC
Confidence 888888888888888663
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-25 Score=229.39 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=159.8
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccc--cCCcccc-------CccccceecccCccCCccccccc--
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR--ELPEGLG-------QLALLSKLELKNCSELEYISSSI-- 350 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~-------~l~~L~~L~l~~~~~~~~~~~~~-- 350 (785)
.++|+.|++.++.. .+|..+... |+.|++++|.++ .+|..+. .+++|++|++++|.+.+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555555555 455544333 666666666664 3444333 46666666666666666666554
Q ss_pred cCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC-----CCCcEEEeccccCCCc
Q 003936 351 FKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF-----KSLTSLEIIDCKKLER 425 (785)
Q Consensus 351 ~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l-----~~L~~L~l~~~~~~~~ 425 (785)
..+++|+.|++++|. +..+|..+..+ ++|++|++++|.+.+.
T Consensus 118 ~~l~~L~~L~Ls~N~---------------------------------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS---------------------------------WATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp CCSCCCSEEEEESCB---------------------------------CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred hcCCCccEEEccCCC---------------------------------CcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 556666666666653 11223333333 6777777777776666
Q ss_pred CCcccCCcccchhhhccCccccc---cChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--cCC-Cc
Q 003936 426 LPDELGNLEALEELRVEGTGIRE---VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM--RLP-DE 499 (785)
Q Consensus 426 ~p~~~~~l~~L~~L~L~~n~i~~---lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~--~~~-~~ 499 (785)
.|..++.+++|++|++++|.+.. +|..+ .+..+++|++|++++|++.+ .++ ..
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISAL---------------------CPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---------------------CTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHH---------------------HhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 66667777777777777776542 12111 01334788888888888763 222 33
Q ss_pred cccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCE
Q 003936 500 IGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
+..+++|+.|++++|.++..+ ..+..+++|++|++++|+++.+|..+. ++|+.|++++|+++++|. +..+++|++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 456788888888888888754 455667888888888888888887766 788888888888888876 888888888
Q ss_pred EeCCCCCCCC
Q 003936 578 LDLFENNLDR 587 (785)
Q Consensus 578 L~l~~n~l~~ 587 (785)
|++++|+++.
T Consensus 301 L~L~~N~l~~ 310 (312)
T 1wwl_A 301 LSLKGNPFLD 310 (312)
T ss_dssp EECTTCTTTC
T ss_pred EeccCCCCCC
Confidence 8888888763
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-24 Score=226.07 Aligned_cols=244 Identities=20% Similarity=0.197 Sum_probs=159.9
Q ss_pred ccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 308 ALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
+|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------------- 111 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--------------------- 111 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---------------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc---------------------
Confidence 45555555555554444 35555555555555555444444445555555555555442
Q ss_pred CccccccCCCCCCccCCcc-ccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCc-cccccChhhhhhhhccccc
Q 003936 387 PSSVLKLNKCSKLESLPSS-LCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGT-GIREVPKSLAQLALSKLKL 463 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n-~i~~lp~~~~~l~L~~L~l 463 (785)
+..+|.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++| .++.++
T Consensus 112 ------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------------- 166 (353)
T 2z80_A 112 ------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------------- 166 (353)
T ss_dssp ------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------
T ss_pred ------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-------------
Confidence 1222222 4445555555555554432222 24455555555555554 233332
Q ss_pred ccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccc
Q 003936 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 464 ~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l 542 (785)
+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+
T Consensus 167 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 167 ---------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ---------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ---------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 34455569999999999999998899999999999999999999988754 34589999999999999875
Q ss_pred cc-c---ccCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCCCCcccc-ccCCCCCCcccccccceee
Q 003936 543 PE-S---LNQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLDRIPEYL-RSFPTSIPSEFTSLRLSVD 611 (785)
Q Consensus 543 p~-~---l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~lp~~~-~~~~~~ip~~l~~l~~~l~ 611 (785)
+. . ....+.++.++++++.+.. +|+.+..+++|++|++++|+++.+|+.. .. .++|+.++++-+
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-----l~~L~~L~L~~N 311 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR-----LTSLQKIWLHTN 311 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc-----CCCCCEEEeeCC
Confidence 42 2 3456789999999998874 6888999999999999999999998753 21 356777444333
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-25 Score=255.58 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=109.5
Q ss_pred HHHHhcccccceeeeecCCCc-cccccCCCCC------------C-CceEEEEecCCCCccc--cc-cc-c-cCceEEEc
Q 003936 12 PYTFSKMTELRLLKFCGSKNK-CMVHSLEGVP------------F-TELRYFEWHQFPLKTL--NI-LH-W-ENLVSLKM 72 (785)
Q Consensus 12 ~~~f~~l~~Lr~L~l~~~~~~-~~~~~~~~~~------------~-~~L~~L~l~~~~l~~l--p~-~~-l-~~L~~L~L 72 (785)
+..+.++++|+.|+++++..- ....+|.... . ++|++|+++++.+... .. .. + .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 567889999999999886421 1112232222 2 7899999999977632 22 22 3 44999999
Q ss_pred CCCC-cc--cccccccCCCCCcEEecCCCccccCC----C-CCccccccceeccccccCc----cccccccccCCcccEE
Q 003936 73 PGSK-VT--QLWDDVQNLVSLKRIDLKYSKLLTKL----P-DLSLAQNLEILDLGYCSSL----TETHSSIQYLNKLEVL 140 (785)
Q Consensus 73 ~~~~-i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~----~-~l~~l~~L~~L~Ls~n~~~----~~~~~~l~~l~~L~~L 140 (785)
+++. ++ .++.....+++|++|+|++|.+...- + -...+++|++|++++|... ..++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 9886 22 23333457899999999999764432 1 1357889999999998865 3556667789999999
Q ss_pred ecCCCCCCCcCCCcc-ccccccEEeccCC
Q 003936 141 DLDRCKSLTSLPTSI-HSKYLKRLVLRGC 168 (785)
Q Consensus 141 ~L~~~~~~~~~p~~~-~l~~L~~L~ls~~ 168 (785)
++++|.. ..+|..+ .+++|++|+++.+
T Consensus 226 ~L~~~~~-~~l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 226 KVGDFEI-LELVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp ECSSCBG-GGGHHHHHHCTTCCEEEECBC
T ss_pred eccCccH-HHHHHHHhhhhHHHhhccccc
Confidence 9999654 4466555 7899999999864
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-23 Score=213.97 Aligned_cols=244 Identities=23% Similarity=0.301 Sum_probs=197.2
Q ss_pred cceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCc
Q 003936 309 LNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388 (785)
Q Consensus 309 L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~ 388 (785)
-+.++.+++.++.+|..+ .++|++|++++|.+....+..+.++++|+.|++++|.. +
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l-~-------------------- 65 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-S-------------------- 65 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-C--------------------
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc-C--------------------
Confidence 357889999999999865 47999999999987754444578899999999988741 0
Q ss_pred cccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCC
Q 003936 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSS 468 (785)
Q Consensus 389 ~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~ 468 (785)
.....+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.++..
T Consensus 66 ---------~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~---------------- 119 (306)
T 2z66_A 66 ---------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF---------------- 119 (306)
T ss_dssp ---------EEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTT----------------
T ss_pred ---------cccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccc----------------
Confidence 11122445667899999999999765 4677788999999999999999877641
Q ss_pred CccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc--cCcccCCCCCCcEEEccCCccccc-ccc
Q 003936 469 FESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQII-PES 545 (785)
Q Consensus 469 ~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~l-p~~ 545 (785)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|+++++ |..
T Consensus 120 -----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 120 -----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp -----TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred -----hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 122334899999999999999999999999999999999999986 799999999999999999999986 678
Q ss_pred ccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCCCCc-cccccCCCCCCccccccccee
Q 003936 546 LNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLDRIP-EYLRSFPTSIPSEFTSLRLSV 610 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~lp-~~~~~~~~~ip~~l~~l~~~l 610 (785)
+..+++|+.|++++|++++++. .+..+++|++|++++|+++..+ ..+. ..|++|+.++++-
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~~~L~~L~L~~ 257 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSSLAFLNLTQ 257 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC----CCCTTCCEEECTT
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH----hhhccCCEEEccC
Confidence 9999999999999999999755 6889999999999999987544 3332 3356788744433
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=224.47 Aligned_cols=78 Identities=31% Similarity=0.329 Sum_probs=57.1
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|+.|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 456666666665544 33 344677777777777777776 56778888888888888888888888888888888
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|.+++
T Consensus 294 N~l~~ 298 (622)
T 3g06_A 294 NPLSE 298 (622)
T ss_dssp CCCCH
T ss_pred CCCCC
Confidence 88875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=221.21 Aligned_cols=240 Identities=23% Similarity=0.337 Sum_probs=139.2
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
..++.++..++.+|..+. +++++|++++|.+.+..+..+.++++|+.|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------------------ 110 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------------------------ 110 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------------------------
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------------------------
Confidence 344455555555554332 455555555555555555555555555555555542
Q ss_pred ccccCCCCCCcc-CCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhh-hcccccccC
Q 003936 390 VLKLNKCSKLES-LPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLA-LSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~L~l~~~ 466 (785)
+.. .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|. .+..+. |+.|++++|
T Consensus 111 ---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 111 ---------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred ---------cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 111 12334455556666666655554444445556666666666666555543 222221 444444444
Q ss_pred CCCccCCc-cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccc-c
Q 003936 467 SSFESLPS-RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-P 543 (785)
Q Consensus 467 ~~~~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p 543 (785)
+.++.++. .+..+++|++|++++|.+.+. | .+..+++|+.|++++|.++.+ |..|.++++|+.|++++|+++.+ |
T Consensus 182 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp TTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred CCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 44443333 344557777777777776543 3 366677777777777777766 55677777777777777777764 4
Q ss_pred ccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|++.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 557777777777777777777643 3566777777777777644
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=219.51 Aligned_cols=239 Identities=22% Similarity=0.370 Sum_probs=120.1
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++..+..++.+|..+. ++++.|++++|.+.+..+..+.++++|+.|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------------------ 99 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------------------------ 99 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC------------------------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc------------------------
Confidence 344444455555554332 445555555555544444455555555555555542
Q ss_pred ccccCCCCCCccC-CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhh-hcccccccC
Q 003936 390 VLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLA-LSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~L~l~~~ 466 (785)
+..+ +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++.+|. .+..+. |+.|++++|
T Consensus 100 ---------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 100 ---------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp ---------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred ---------CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 1111 1234455555555555555444444445555555555555555555443 122221 222222222
Q ss_pred CCCccCCc-cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-
Q 003936 467 SSFESLPS-RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP- 543 (785)
Q Consensus 467 ~~~~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp- 543 (785)
+.+..++. .+..+++|++|++++|.+.. +| .+..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|+++.++
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 22222222 23334566666666665442 23 255556666666666666555 455566666666666666665543
Q ss_pred ccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l 585 (785)
..|..+++|+.|+|++|+++.+|. .+..+++|+.|++++|++
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 345566666666666666665533 345556666666666653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=205.87 Aligned_cols=219 Identities=23% Similarity=0.307 Sum_probs=155.2
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------------------------ 67 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------------------------ 67 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------------------------
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------------------------
Confidence 45566666666666433 4566666666666655555556666666666666653
Q ss_pred ccccCCCCCCccC-CccccCCCCCcEEEecccc-CCCcCCcccCCcccchhhhccCccccccC-hhhhhhhhcccccccC
Q 003936 390 VLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCK-KLERLPDELGNLEALEELRVEGTGIREVP-KSLAQLALSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~L~~L~l~~~ 466 (785)
+..+ |..+..+++|+.|++++|. +....|..+..+++|++|++++|.++.++ ..+.
T Consensus 68 ---------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 126 (285)
T 1ozn_A 68 ---------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------------ 126 (285)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred ---------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh------------
Confidence 1111 3445566677777777776 33333566667777777777777666543 2222
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PE 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~ 544 (785)
.+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..+++|++|++++|.++.+ |.
T Consensus 127 -----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 127 -----------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp -----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred -----------CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 23778888888888776666678888889999999988888865 588899999999999999885 77
Q ss_pred cccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
.+..+++|+.|++++|+++++|. .+..+++|++|++++|++.
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88899999999999999998764 4788999999999999854
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-25 Score=254.70 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=92.0
Q ss_pred ccccCceEEEcCCCC-cccc---c------------ccccCCCCCcEEecCCCccccCCC-CCc-cccccceeccccccC
Q 003936 62 LHWENLVSLKMPGSK-VTQL---W------------DDVQNLVSLKRIDLKYSKLLTKLP-DLS-LAQNLEILDLGYCSS 123 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~-i~~l---~------------~~~~~l~~L~~L~Ls~n~~~~~~~-~l~-~l~~L~~L~Ls~n~~ 123 (785)
..+++|++|+++++. +..+ | .-...+++|++|+|++|.+....+ .+. .+++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 556778888887764 2111 1 112456777888887776433322 233 567778888877743
Q ss_pred ccc--cccccccCCcccEEecCCCCCCCc----CCCcc-ccccccEEeccCCcCCCCCCCcccccccccccccccccccc
Q 003936 124 LTE--THSSIQYLNKLEVLDLDRCKSLTS----LPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEEL 196 (785)
Q Consensus 124 ~~~--~~~~l~~l~~L~~L~L~~~~~~~~----~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~l 196 (785)
.+. ++..+..+++|++|++++|..... ++... .+++|++|++++|. ..+. ...+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~-----------------~~~l 203 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVS-----------------FSAL 203 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCC-----------------HHHH
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCC-----------------HHHH
Confidence 332 444455777777887777653222 22222 45677777777663 1110 0122
Q ss_pred CcchhccccccceeccccccccccchhhhcccccccccccCC
Q 003936 197 PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 197 p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (785)
+..+..+++|++|++++|...+.++..+..+++|+.|++..+
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 223345688888888888555556777777777777776654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=217.78 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=143.5
Q ss_pred ccccceeeccCcccc-cCCccc--cCccccceecccCccCCccccccccCC-----CCCCEEEeeCCCCCCCCCCCceec
Q 003936 306 LQALNRLIIDGTAIR-ELPEGL--GQLALLSKLELKNCSELEYISSSIFKL-----KSVESIEISNCSNLKGFPEIPFCN 377 (785)
Q Consensus 306 l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~lp~l~~l~ 377 (785)
+++|++|++++|.++ .+|..+ +.+++|++|++++|.+.+. |..+..+ ++|++|++++|.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~------------ 160 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH------------ 160 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS------------
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC------------
Confidence 445555556555555 344443 5566666666666555544 4444444 666666666664
Q ss_pred cCCCCCcccCccccccCCCCCCccC-CccccCCCCCcEEEeccccCCCc--CCccc--CCcccchhhhccCccccccChh
Q 003936 378 IDGSGIERIPSSVLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLER--LPDEL--GNLEALEELRVEGTGIREVPKS 452 (785)
Q Consensus 378 l~~~~i~~lp~~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~L~~n~i~~lp~~ 452 (785)
+..+ |..++.+++|+.|++++|.+.+. .+..+ ..+++|++|++++|.++.++..
T Consensus 161 ---------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 161 ---------------------SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp ---------------------CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred ---------------------CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence 1122 24566777788888887776554 23333 7788888888888888755432
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC-CccccccccceEEecCeeccccCcccCCCCCCcE
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP-DEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEW 531 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 531 (785)
...+ +..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+. ++|++
T Consensus 220 ~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 220 CSAL-------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp HHHH-------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred HHHH-------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 2111 1123899999999999888775 456778999999999999999998776 89999
Q ss_pred EEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 532 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|++++|+++++|. +..+++|+.|++++|++++
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999987 9999999999999999875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=218.69 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=68.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+.++++|++|++++|.++.+|. +..+++|++|++++|.+.+..|..+.++++|+.|++++|..
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l---------------- 254 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV---------------- 254 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC----------------
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC----------------
Confidence 3445555666666666665543 55566666666666666666666666666666666666530
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR 447 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~ 447 (785)
-...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 255 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 255 ----------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ----------------ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 0112334556677777777777666555566677777777777777665
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-24 Score=225.75 Aligned_cols=218 Identities=16% Similarity=0.164 Sum_probs=120.8
Q ss_pred ccCccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
+..+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~---------------- 91 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY---------------- 91 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE----------------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc----------------
Confidence 344556777777777776655 346667777777777766655443 6666666676666663
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhhhcc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLALSK 460 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~L~~ 460 (785)
+..+ ...++|+.|++++|.+.+..+. .+++|++|++++|.++.++. .+..+
T Consensus 92 -----------------l~~l----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l---- 143 (317)
T 3o53_A 92 -----------------VQEL----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR---- 143 (317)
T ss_dssp -----------------EEEE----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGG----
T ss_pred -----------------cccc----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhcc----
Confidence 1111 1224555555555554443322 23445555555555554432 22222
Q ss_pred cccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCcc-ccccccceEEecCeeccccCcccCCCCCCcEEEccCCcc
Q 003936 461 LKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL 539 (785)
Q Consensus 461 L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l 539 (785)
++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|. ...+++|++|++++|++
T Consensus 144 -------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 144 -------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp -------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCC
T ss_pred -------------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcC
Confidence 455555555555554444433 245556666666666555543 22356666666666666
Q ss_pred ccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 540 QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 540 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++.
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 66655566666666666666666666665666666666666666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=217.61 Aligned_cols=225 Identities=22% Similarity=0.279 Sum_probs=169.3
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
++++.|++.+|......+..|.++++|++|+|++|.++.++ ..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56666776666655555566667777777777777776555 34666777777777776655554555666666666666
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc-ccCCcccchhhh
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD-ELGNLEALEELR 440 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 440 (785)
++|. +..++ +..+..+++|+.|++++|...+.++. .|..+++|++|+
T Consensus 144 ~~N~-----------------i~~~~---------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 144 RNNP-----------------IESIP---------------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSCC-----------------CCEEC---------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCCc-----------------ccccC---------------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6653 22111 12466778888888888766666554 577888888888
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV- 519 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l- 519 (785)
+++|.++.+|. +..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+
T Consensus 192 L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 192 LAMCNLREIPN------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CTTSCCSSCCC------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccccc------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 88888887763 22348999999999999998899999999999999999999988
Q ss_pred CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCC
Q 003936 520 PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 520 p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 563 (785)
+..|..+++|++|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5678999999999999999999875 4788999999999999875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=208.75 Aligned_cols=213 Identities=22% Similarity=0.299 Sum_probs=179.5
Q ss_pred CCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCc
Q 003936 296 FERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP 374 (785)
Q Consensus 296 ~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~ 374 (785)
+..+|..+ .++|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|..++.+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~---- 96 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV---- 96 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC----
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc----
Confidence 34556533 4689999999999998775 5889999999999999888877888999999999999998633322
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChh-h
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS-L 453 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~ 453 (785)
.|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.++.. +
T Consensus 97 ---------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 97 ---------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp ---------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 145577889999999999998888888899999999999999999877643 3
Q ss_pred hhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEE
Q 003936 454 AQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWL 532 (785)
Q Consensus 454 ~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L 532 (785)
.. +++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|++|
T Consensus 150 ~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 150 RD-----------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TT-----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cc-----------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 33 38999999999998877777789999999999999999977 7889999999999
Q ss_pred EccCCccccccc-cccCCCCCCEEEcccCCCCC
Q 003936 533 VLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 533 ~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 564 (785)
++++|+++.+|. .+..+++|+.|++++|.+..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999999874 58999999999999998874
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-23 Score=217.08 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=182.4
Q ss_pred ccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 308 ALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
+++..+++.+.+...+.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------------- 69 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--------------------- 69 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC---------------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc---------------------
Confidence 356667777766644433 4567789999999998888777888888888888888874
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
+...+. +..+++|+.|++++|.+.+. ...++|++|++++|.++.++..
T Consensus 70 ------------l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~-------------- 117 (317)
T 3o53_A 70 ------------LYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS-------------- 117 (317)
T ss_dssp ------------CEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC--------------
T ss_pred ------------CCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc--------------
Confidence 222222 66788888888888875432 2337788888888887765532
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-Cccc-CCCCCCcEEEccCCccccccc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESL-GQLSSLEWLVLSDNNLQIIPE 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~Ls~n~l~~lp~ 544 (785)
.+++|++|++++|++.+..+..+..+++|+.|++++|.++.+ +..+ ..+++|++|++++|.++.+|.
T Consensus 118 -----------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 118 -----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp -----------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred -----------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 127899999999999988888899999999999999999987 4444 478999999999999999864
Q ss_pred cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccc
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~ 608 (785)
. ..+++|+.|++++|+++++|..+..+++|+.|++++|+++.+|+.+.. .++|+.+++
T Consensus 187 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-----l~~L~~L~l 244 (317)
T 3o53_A 187 Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-----SQNLEHFDL 244 (317)
T ss_dssp C-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-----CTTCCEEEC
T ss_pred c-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-----CCCCCEEEc
Confidence 4 359999999999999999988899999999999999999999876432 456777443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-24 Score=249.09 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=51.3
Q ss_pred ccccccceEEecCeeccc-cCcccCC-CCCCcEEEccCCcccc--ccccccCCCCCCEEEcccCCCCC--CCCcCcCCCC
Q 003936 501 GNLEYLKVLTIKGTAIRE-VPESLGQ-LSSLEWLVLSDNNLQI--IPESLNQLSSLVSLKLSNNNLER--IPERLDPLSS 574 (785)
Q Consensus 501 ~~l~~L~~L~L~~n~l~~-lp~~~~~-l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~ 574 (785)
..+++|+.|++++ .++. .+..+.. +++|+.|+|++|.++. ++.....+++|+.|+|++|.++. ++..+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666655 3321 1222332 6778888888877754 22222557788888888887754 2334455778
Q ss_pred CCEEeCCCCCC
Q 003936 575 LKYLDLFENNL 585 (785)
Q Consensus 575 L~~L~l~~n~l 585 (785)
|++|++++|++
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 88888888876
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=222.99 Aligned_cols=221 Identities=16% Similarity=0.175 Sum_probs=165.5
Q ss_pred CccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 305 NLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
.+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..| +..+++|+.|++++|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~------------------ 91 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY------------------ 91 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE------------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc------------------
Confidence 3456777777777777665 357777777777777777665544 6667777777777663
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccC-hhhhhhhhcccc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP-KSLAQLALSKLK 462 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~L~~L~ 462 (785)
+..+| ..++|+.|++++|.+.+..+. .+++|+.|++++|.++.++ ..+..+
T Consensus 92 ---------------l~~l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l------ 143 (487)
T 3oja_A 92 ---------------VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR------ 143 (487)
T ss_dssp ---------------EEEEE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGG------
T ss_pred ---------------CCCCC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCC------
Confidence 11111 226777777777776654443 3456777777777776543 233333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccc-cccccceEEecCeeccccCcccCCCCCCcEEEccCCcccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG-NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~ 541 (785)
++|+.|++++|.+.+..|..+. .+++|+.|+|++|.++.+|. ...+++|+.|+|++|.+++
T Consensus 144 -----------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 144 -----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp -----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE
T ss_pred -----------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC
Confidence 7888888888888887777765 78899999999999988865 4469999999999999999
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC--CCccc
Q 003936 542 IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD--RIPEY 591 (785)
Q Consensus 542 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~ 591 (785)
+|..+..+++|+.|++++|.++++|..+..+++|+.|++++|++. .+|..
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 988899999999999999999999999999999999999999976 55544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=225.17 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=198.5
Q ss_pred CCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 281 MFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
.+++|+.|++.+|...+..|..+..+++|++|+|++|.++..++ ++.+++|++|++++|.+.+.. ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 45689999999998777777889999999999999999997666 899999999999999765432 237888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..++. ..+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus 106 L~~N~---------------------------------l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 106 AANNN---------------------------------ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp CCSSC---------------------------------CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred CcCCc---------------------------------CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 88874 112222 2468899999999999998888999999999999
Q ss_pred ccCcccccc-Chhhh-hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc
Q 003936 441 VEGTGIREV-PKSLA-QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE 518 (785)
Q Consensus 441 L~~n~i~~l-p~~~~-~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 518 (785)
+++|.++.+ |..+. .+ ++|+.|++++|.+.+..+ ...+++|+.|+|++|.++.
T Consensus 151 Ls~N~l~~~~~~~l~~~l-----------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASS-----------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CTTSCCCEEEGGGGGGGT-----------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCcChHHHhhhC-----------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC
Confidence 999999864 44433 33 899999999999877633 3358999999999999999
Q ss_pred cCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC--CCCCcCcCCCCCCEEeCC
Q 003936 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE--RIPERLDPLSSLKYLDLF 581 (785)
Q Consensus 519 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~ 581 (785)
+|+.+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .+|.++..++.|+.++++
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 998899999999999999999999999999999999999999998 578888888888887775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=195.61 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=114.7
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++.. .+..+++|++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L 129 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----------------------PIGHLKTLKEL 129 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----------------------CCTTCTTCCEE
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch----------------------hcccCCCCCEE
Confidence 44556666666666665555555566666666666666666554431 12223777777
Q ss_pred EeeCCcCcc-cCCCccccccccceEEecCeeccccC-cccCCCCCCc----EEEccCCccccccccccCCCCCCEEEccc
Q 003936 486 EIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLE----WLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 486 ~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++++|.+.+ .+|..+..+++|+.|++++|.++.++ ..+..+++|+ +|++++|.++.++.......+|+.|++++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 777777765 35777788888888888888888774 4566666666 89999999998887766667899999999
Q ss_pred CCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 560 NNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 560 n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
|+++.+|.. +..+++|+.|++++|+++
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CceeecCHhHhcccccccEEEccCCccc
Confidence 999998665 588999999999999865
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=194.42 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=147.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+.+++++++++++++.++.+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----------------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----------------
Confidence 5677889999999999998887653 688889999888777666667777777777776653
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..++.. ..+++|+.|+ +++|.++.+|..+..+
T Consensus 67 ----------------l~~~~~~-~~l~~L~~L~------------------------Ls~N~l~~l~~~~~~l------ 99 (290)
T 1p9a_G 67 ----------------LTKLQVD-GTLPVLGTLD------------------------LSHNQLQSLPLLGQTL------ 99 (290)
T ss_dssp ----------------CCEEECC-SCCTTCCEEE------------------------CCSSCCSSCCCCTTTC------
T ss_pred ----------------cCcccCC-CCCCcCCEEE------------------------CCCCcCCcCchhhccC------
Confidence 1111111 2344444444 4444444444333222
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~ 541 (785)
++|++|++++|++.+..+..+.++++|+.|++++|.++.+|. .+..+++|+.|+|++|+++.
T Consensus 100 -----------------~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 100 -----------------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp -----------------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred -----------------CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 677777777777766666777888888888888888888754 46788899999999999988
Q ss_pred cccc-ccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 IPES-LNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|.. +..+++|+.|+|++|+++.+|..+....+|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8765 57899999999999999999988888889999999998753
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=188.01 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=100.2
Q ss_pred ccCCCCCcEEEecc-ccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC-
Q 003936 406 LCMFKSLTSLEIID-CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT- 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~- 483 (785)
+..+++|+.|++++ |.+.+..+..|..+++|++|++++|.++.+|. +..+ ++|+
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l-----------------------~~L~~ 131 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV-----------------------YSTDI 131 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC-----------------------CBCCS
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc-----------------------ccccc
Confidence 44555555555555 44443333455555666666666665555553 2222 4444
Q ss_pred --EEEeeCC-cCcccCCCccccccccc-eEEecCeeccccCcccCCCCCCcEEEccCCc-ccccc-ccccCC-CCCCEEE
Q 003936 484 --SLEIIDC-KNFMRLPDEIGNLEYLK-VLTIKGTAIREVPESLGQLSSLEWLVLSDNN-LQIIP-ESLNQL-SSLVSLK 556 (785)
Q Consensus 484 --~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~ 556 (785)
+|++++| .+.+..+..+.++++|+ .|++++|.++.+|......++|++|++++|. ++.+| ..+..+ ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 7777777 55555555677788888 8888888888776544444778888888884 87775 457777 8888888
Q ss_pred cccCCCCCCCCcCcCCCCCCEEeCCCCC
Q 003936 557 LSNNNLERIPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 557 L~~n~l~~lp~~l~~l~~L~~L~l~~n~ 584 (785)
+++|+++.+|.. .+++|+.|+++++.
T Consensus 212 l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCccccCChh--HhccCceeeccCcc
Confidence 888888887765 67788888887764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=192.39 Aligned_cols=210 Identities=20% Similarity=0.268 Sum_probs=165.0
Q ss_pred CCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCce
Q 003936 297 ERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPF 375 (785)
Q Consensus 297 ~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~ 375 (785)
..+|..+. ++|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------- 87 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---------- 87 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----------
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc----------
Confidence 34555442 468888888888887765 57788888888888887776666677778888888887774
Q ss_pred eccCCCCCcccCccccccCCCCCCccC-CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccc--cChh
Q 003936 376 CNIDGSGIERIPSSVLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE--VPKS 452 (785)
Q Consensus 376 l~l~~~~i~~lp~~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~--lp~~ 452 (785)
+..+ +..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.++. +|..
T Consensus 88 -----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 -----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp -----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred -----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 1222 2456778888888888888777666678888888888888888875 4555
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc----eEEecCeeccccCcccCCCCC
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK----VLTIKGTAIREVPESLGQLSS 528 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~L~~n~l~~lp~~~~~l~~ 528 (785)
+..+ ++|++|++++|++.+..+..+..+.+|+ .|++++|.++.++.......+
T Consensus 145 ~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 145 FSNL-----------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (276)
T ss_dssp GGGC-----------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred hccC-----------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence 5554 8899999999988877777777777777 899999999999776666779
Q ss_pred CcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCC
Q 003936 529 LEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 529 L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 564 (785)
|++|++++|+++.+|.. +..+++|+.|++++|.++.
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99999999999998865 6889999999999998874
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=183.61 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=138.8
Q ss_pred ccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccC
Q 003936 308 ALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIP 387 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp 387 (785)
..+.++++++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------- 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN----------------------- 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-----------------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-----------------------
Confidence 46778888888888876543 56777777777655444444444555555555444
Q ss_pred ccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCC
Q 003936 388 SSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCS 467 (785)
Q Consensus 388 ~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~ 467 (785)
.+.+..+..|..+++|++|++++|.++.+|...
T Consensus 72 ---------------------------------~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------- 104 (270)
T 2o6q_A 72 ---------------------------------KLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-------------- 104 (270)
T ss_dssp ---------------------------------CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------------
T ss_pred ---------------------------------ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------------
Confidence 333333333444555555555555555444221
Q ss_pred CCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-c
Q 003936 468 SFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-S 545 (785)
Q Consensus 468 ~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~ 545 (785)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.++.+|. .
T Consensus 105 --------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 105 --------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp --------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 1122667777777777766666777888888888888888888865 47889999999999999998775 4
Q ss_pred ccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
+..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 8889999999999999998865 4788999999999999854
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=187.04 Aligned_cols=185 Identities=25% Similarity=0.284 Sum_probs=155.2
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.++.++.. . .+
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-----------------------~l 76 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G-----------------------TL 76 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S-----------------------CC
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C-----------------------CC
Confidence 34444432 6899999999998888888899999999999999999877643 2 23
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+. .+|..+..+++|+.|++++|.++.+| ..|..+++|++|+|++|+++.+|.. +..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 89999999999876 67888899999999999999999996 6799999999999999999998754 789999999999
Q ss_pred ccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 558 SNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 558 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
++|+++++|.. +..+++|+.|++++|+++.+|+.+.. ...++.+.+.-+...|.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-----~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-----SHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCCCSEEECCSCCBCCS
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-----cccCCeEEeCCCCccCc
Confidence 99999999765 57899999999999999999977443 23677766555666664
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-20 Score=193.95 Aligned_cols=155 Identities=24% Similarity=0.333 Sum_probs=114.4
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.++. +.. +++|++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~-----------------------l~~L~~L 134 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-LAG-----------------------LSNLQVL 134 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGG-GTT-----------------------CTTCCEE
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchh-hcC-----------------------CCCCCEE
Confidence 4455566666666665433 22 45566666666666666665543 222 2777777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 777777655433 7778888888888888888776 8889999999999999988775 78899999999999999988
Q ss_pred CCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 566 PERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 566 p~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++ +..+++|+.|++++|+++..|..
T Consensus 211 ~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 211 SP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred cc-ccCCCCCCEEEccCCeeecCCee
Confidence 74 88899999999999998877654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=188.02 Aligned_cols=200 Identities=23% Similarity=0.335 Sum_probs=157.6
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
...+++|++|+++++.++.++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~----------------- 96 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----------------- 96 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-----------------
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-----------------
Confidence 345677888888888887776 47778888888888876655433 7777888888887774
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.++.++. +..+
T Consensus 97 ----------------l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l------ 150 (308)
T 1h6u_A 97 ----------------LKNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGL------ 150 (308)
T ss_dssp ----------------CSCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC------
T ss_pred ----------------CCCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCC------
Confidence 12222 46678888999999888665 333 8888999999999998887765 3333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.+
T Consensus 151 -----------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 151 -----------------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp -----------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred -----------------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 889999999998776433 8889999999999999998876 88999999999999999998
Q ss_pred cccccCCCCCCEEEcccCCCCCCCCcC
Q 003936 543 PESLNQLSSLVSLKLSNNNLERIPERL 569 (785)
Q Consensus 543 p~~l~~l~~L~~L~L~~n~l~~lp~~l 569 (785)
+. +..+++|+.|++++|+++..|..+
T Consensus 211 ~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 211 SP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp GG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred cc-ccCCCCCCEEEccCCeeecCCeee
Confidence 74 899999999999999998876543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-20 Score=194.90 Aligned_cols=155 Identities=21% Similarity=0.168 Sum_probs=96.3
Q ss_pred CCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccc---cChhhhhhhhcccccccCCCCccCCccccCCCCCCE
Q 003936 408 MFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE---VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTS 484 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~---lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~ 484 (785)
.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.. ++... .+..+++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------~~~~l~~L~~ 201 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---------------------CPHKFPAIQN 201 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---------------------CTTSSCCCCS
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---------------------hhhcCCCCCE
Confidence 45566666666666555555555566666666666665432 11110 0112255555
Q ss_pred EEeeCCcCccc--CCC-ccccccccceEEecCeecccc-CcccCCC---CCCcEEEccCCccccccccccCCCCCCEEEc
Q 003936 485 LEIIDCKNFMR--LPD-EIGNLEYLKVLTIKGTAIREV-PESLGQL---SSLEWLVLSDNNLQIIPESLNQLSSLVSLKL 557 (785)
Q Consensus 485 L~l~~~~~~~~--~~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 557 (785)
|++++|.+... .+. .++.+++|++|+|++|.++.+ |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence 55655555311 111 134556677777777777665 5555555 588888888888888877664 78888888
Q ss_pred ccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 558 SNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 558 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++++|. +..+++|+.|++++|+++
T Consensus 280 s~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 8888888765 677888888888888865
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=187.94 Aligned_cols=205 Identities=21% Similarity=0.215 Sum_probs=154.2
Q ss_pred ccccceeeccCcccc-cCCccc--cCccccceecccCccCCcccc----ccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 306 LQALNRLIIDGTAIR-ELPEGL--GQLALLSKLELKNCSELEYIS----SSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 306 l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
+++|++|++++|.+. ..|..+ +.+++|++|++++|.+.+..+ ..+..+++|++|++++|..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l------------ 157 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS------------ 157 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc------------
Confidence 455777777777776 444445 677777888887777765433 2344677888888887751
Q ss_pred CCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCc--C--CcccCCcccchhhhccCccccccChhhh
Q 003936 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLER--L--PDELGNLEALEELRVEGTGIREVPKSLA 454 (785)
Q Consensus 379 ~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~--~--p~~~~~l~~L~~L~L~~n~i~~lp~~~~ 454 (785)
....+..+..+++|+.|++++|.+.+. + +..+..+++|++|++++|.++.++....
T Consensus 158 --------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 158 --------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp --------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred --------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 112234567888999999999987652 2 2334788999999999999987665311
Q ss_pred hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccc---cccceEEecCeeccccCcccCCCCCCcE
Q 003936 455 QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNL---EYLKVLTIKGTAIREVPESLGQLSSLEW 531 (785)
Q Consensus 455 ~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 531 (785)
.+ +..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|++
T Consensus 218 ~l-------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~ 276 (310)
T 4glp_A 218 AL-------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRV 276 (310)
T ss_dssp HH-------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSC
T ss_pred HH-------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCE
Confidence 11 1122899999999999988878777766 699999999999999998764 89999
Q ss_pred EEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 532 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|+|++|+++++|. +..+++|+.|++++|+++.
T Consensus 277 L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 9999999999876 7889999999999999864
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=177.21 Aligned_cols=180 Identities=28% Similarity=0.414 Sum_probs=149.9
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++++.|++++|.+.+..+..+..+++|++|++++|.++.+|... +..+++|++|++++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----------------------~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----------------------FKELKNLETLWVTD 94 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT----------------------TSSCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh----------------------hcCCCCCCEEECCC
Confidence 57999999999988777778999999999999999998877543 22348999999999
Q ss_pred CcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPE 567 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~ 567 (785)
|.+....+..+..+++|++|++++|.++.++ ..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|+++.+|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9998877788899999999999999999885 4578999999999999999998865 8999999999999999999865
Q ss_pred -cCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeeccc
Q 003936 568 -RLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 568 -~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
.+..+++|++|++++|+++.+|+.. +. . .++|+.++++-+...|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~-~-l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGA--FD-S-LEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTT--TT-T-CTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHH--hc-c-ccCCCEEEecCCCeeC
Confidence 5889999999999999999888641 10 1 3456664444444444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=184.70 Aligned_cols=106 Identities=28% Similarity=0.456 Sum_probs=62.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. ++.+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 455555555555554444445555666666666666665543 345666666666666666665433 466666666666
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l 585 (785)
++|+++++|. .+..+++|+.|++++|++
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 6666666533 356666666666666663
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-19 Score=180.87 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=106.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++... +..+++|++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L 138 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV----------------------FDKLTNLTYL 138 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----------------------TTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH----------------------hccCCCCCEE
Confidence 345556666666666555555555566666666666666666554321 1222677777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 563 (785)
++++|.+.+..+..+..+++|+.|++++|.++.+|. .++.+++|++|++++|+++++|. .+..+++|+.|++++|.+.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 777777666666667777888888888888877754 45778888888888888888664 4688888888888888765
Q ss_pred CCCCcCcCCCCCCEEeCCCCCCC-CCccc
Q 003936 564 RIPERLDPLSSLKYLDLFENNLD-RIPEY 591 (785)
Q Consensus 564 ~lp~~l~~l~~L~~L~l~~n~l~-~lp~~ 591 (785)
. .+++|+.|+++.|.+. .+|..
T Consensus 219 ~------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 219 C------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp C------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred c------cCcHHHHHHHHHHhCCCcccCc
Confidence 3 3456777777777743 55544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-20 Score=203.45 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=119.7
Q ss_pred cCCCCCcEEEeccccCCC----cCCcccCCcccchhhhccCccccc-----cChhhhhh----------hhcccccccCC
Q 003936 407 CMFKSLTSLEIIDCKKLE----RLPDELGNLEALEELRVEGTGIRE-----VPKSLAQL----------ALSKLKLKKCS 467 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l----------~L~~L~l~~~~ 467 (785)
..+++|+.|++++|.+.. .+|..+..+++|++|++++|.++. ++..+..+ .|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 345555555555555444 244444555555555555555542 11222221 34455555544
Q ss_pred CC-ccCC---ccccCCCCCCEEEeeCCcCcc-----cCCCccccccccceEEecCeec-----cccCcccCCCCCCcEEE
Q 003936 468 SF-ESLP---SRLYVSKSLTSLEIIDCKNFM-----RLPDEIGNLEYLKVLTIKGTAI-----REVPESLGQLSSLEWLV 533 (785)
Q Consensus 468 ~~-~~lp---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~n~l-----~~lp~~~~~l~~L~~L~ 533 (785)
.. ..+| ..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.+ ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 33 2222 234445788889998888762 3444777888899999998888 45677788888899999
Q ss_pred ccCCcccc-----ccccc--cCCCCCCEEEcccCCCCC-----CCCcC-cCCCCCCEEeCCCCCCCCCc
Q 003936 534 LSDNNLQI-----IPESL--NQLSSLVSLKLSNNNLER-----IPERL-DPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 534 Ls~n~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~l~~n~l~~lp 589 (785)
|++|.++. +|..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|+++...
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99998875 46666 348889999999998887 77777 56788999999998876543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=186.58 Aligned_cols=237 Identities=19% Similarity=0.164 Sum_probs=163.2
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC--CCccccccce-ecccccc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEI-LDLGYCS 122 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~-L~Ls~n~ 122 (785)
++++.+++.++++|..-++++++|+|++|+|+.+|.+ |.++++|++|+|++|++.+.+| .|..+++|++ +.+++|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4677888888888883357899999999999999864 8999999999999998777666 3788888776 4555666
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcch
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSI 200 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l 200 (785)
+....|..|+.+++|++|++++|. +..+|... ...++..|++.++..+..++....
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--------------------- 149 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--------------------- 149 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS---------------------
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccch---------------------
Confidence 666667788999999999999965 44444433 667778888887766665554322
Q ss_pred hcc-ccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCc
Q 003936 201 KCL-SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279 (785)
Q Consensus 201 ~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~ 279 (785)
..+ ..++.|++++|.+....+. ...
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~-~f~----------------------------------------------------- 175 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNS-AFN----------------------------------------------------- 175 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTT-SST-----------------------------------------------------
T ss_pred hhcchhhhhhccccccccCCChh-hcc-----------------------------------------------------
Confidence 122 2344555555543321111 111
Q ss_pred cCCCCCcEEecccCCCCCCCCc-cccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCE
Q 003936 280 CMFKSLTSLEIIDCPNFERLPD-ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVES 358 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 358 (785)
..+|++|.+.++..++.+|. .|..+++|++|++++|+++.+|.. .+.+|+.|.+.++..++.+|. +.++++|+.
T Consensus 176 --~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 176 --GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp --TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred --ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 12233333333344445553 467888999999999999998864 356677777777777778874 778889999
Q ss_pred EEeeCC
Q 003936 359 IEISNC 364 (785)
Q Consensus 359 L~l~~~ 364 (785)
+++.++
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 888654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=175.44 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=154.9
Q ss_pred CCCCCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCcc-CCccccccccCCCCCCEEEeeCCCCCCCC
Q 003936 293 CPNFERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCS-ELEYISSSIFKLKSVESIEISNCSNLKGF 370 (785)
Q Consensus 293 ~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 370 (785)
|..++.+|. + .++|++|++++|+++.+|. .++.+++|++|++++|. +.+..+..+.++++|++|++++|.
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n----- 91 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR----- 91 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-----
T ss_pred ccCccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-----
Confidence 333556665 3 2378889999988888776 57888899999999887 444444577888899999988732
Q ss_pred CCCceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccch---hhhccCc-c
Q 003936 371 PEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALE---ELRVEGT-G 445 (785)
Q Consensus 371 p~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~---~L~L~~n-~ 445 (785)
.+..++ ..+..+++|+.|++++|.+.+ +|. +..+++|+ .|++++| .
T Consensus 92 ---------------------------~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 92 ---------------------------NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp ---------------------------TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTT
T ss_pred ---------------------------CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcc
Confidence 222333 356778889999999988665 666 77788887 8999998 8
Q ss_pred ccccChh-hhhhhhcccccccCCCCccCCccccCCCCCC-EEEeeCCcCcccCCCccccccccceEEecCee-ccccC-c
Q 003936 446 IREVPKS-LAQLALSKLKLKKCSSFESLPSRLYVSKSLT-SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTA-IREVP-E 521 (785)
Q Consensus 446 i~~lp~~-~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-~ 521 (785)
++.+|.. +.. +++|+ .|++++|++....+..+.. ++|+.|++++|. ++.+| .
T Consensus 143 l~~i~~~~~~~-----------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 143 MTSIPVNAFQG-----------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CCEECTTTTTT-----------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTT
T ss_pred hhhcCcccccc-----------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHH
Confidence 8877643 333 37888 8888888877433344444 789999999994 88885 5
Q ss_pred ccCCC-CCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 522 SLGQL-SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 522 ~~~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
.+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred HhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 67888 9999999999999998876 7889999998876
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-20 Score=200.12 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=166.5
Q ss_pred cccCCCCCCCCccccCccccceeeccCcccccCC-----ccccCcc-ccceecccCccCCccccccccCC-----CCCCE
Q 003936 290 IIDCPNFERLPDELGNLQALNRLIIDGTAIRELP-----EGLGQLA-LLSKLELKNCSELEYISSSIFKL-----KSVES 358 (785)
Q Consensus 290 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~ 358 (785)
+..+...+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|.+....+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 3333333444555555566888888888887665 3466677 78888888887766655555553 77777
Q ss_pred EEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC-CCCcEEEeccccCCCcCCcc----cCC-
Q 003936 359 IEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF-KSLTSLEIIDCKKLERLPDE----LGN- 432 (785)
Q Consensus 359 L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l-~~L~~L~l~~~~~~~~~p~~----~~~- 432 (785)
|++++|. ++ ..+ ...+...+..+ ++|+.|++++|.+.+..+.. +..
T Consensus 85 L~Ls~n~-l~----------------~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 85 LNLSGNF-LS----------------YKS-----------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp EECCSSC-GG----------------GSC-----------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred EECcCCc-CC----------------hHH-----------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 7777774 11 000 00111123344 67888888888765544433 333
Q ss_pred cccchhhhccCccccccC-----hhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccc----cc
Q 003936 433 LEALEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG----NL 503 (785)
Q Consensus 433 l~~L~~L~L~~n~i~~lp-----~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l 503 (785)
.++|++|++++|.++... ..+... .++|++|++++|.+.+..+..+. ..
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~----------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 194 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAI----------------------PANVNSLNLRGNNLASKNCAELAKFLASI 194 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTS----------------------CTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcC----------------------CccccEeeecCCCCchhhHHHHHHHHHhC
Confidence 257888888888777322 222222 03899999999988776654443 34
Q ss_pred -cccceEEecCeeccc-----cCcccCC-CCCCcEEEccCCcccccc-----ccccCCCCCCEEEcccCCCCC-------
Q 003936 504 -EYLKVLTIKGTAIRE-----VPESLGQ-LSSLEWLVLSDNNLQIIP-----ESLNQLSSLVSLKLSNNNLER------- 564 (785)
Q Consensus 504 -~~L~~L~L~~n~l~~-----lp~~~~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~~------- 564 (785)
++|++|+|++|.++. ++..+.. .++|++|+|++|.++..+ ..+..+++|+.|++++|.+..
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 589999999999987 6666666 458999999999997643 446788999999999998433
Q ss_pred -CCCcCcCCCCCCEEeCCCCCCCC
Q 003936 565 -IPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 565 -lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
++..+..+++|+.||+++|++..
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHhccCCceEEEecCCCcCCC
Confidence 45667889999999999999763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=171.24 Aligned_cols=165 Identities=24% Similarity=0.359 Sum_probs=138.1
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++.++.. .+..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~ 81 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG----------------------VFDD 81 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------TTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh----------------------Hhcc
Confidence 334444443 5899999999998888888899999999999999988876543 2223
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccccc-cccCCCCCCEEE
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLK 556 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 556 (785)
+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|++|+|++|+++.+|. .++.+++|+.|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 38999999999999888788889999999999999999988654 6889999999999999999876 689999999999
Q ss_pred cccCCCCCCCC-cCcCCCCCCEEeCCCCCCCC
Q 003936 557 LSNNNLERIPE-RLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 557 L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 587 (785)
|++|+++.+|. .+..+++|+.|++++|+++.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999998754 68889999999999998653
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=180.48 Aligned_cols=224 Identities=23% Similarity=0.261 Sum_probs=146.0
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++.++++++++|..+ .+++++|++++|++.+.-+..|.++++|++|+|++|...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--------------------- 68 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------- 68 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC---------------------
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC---------------------
Confidence 34555566666666544 3456666666665544333455666666666666664221
Q ss_pred ccccCCCCCCccCC-ccccCCCCCcE-EEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCC
Q 003936 390 VLKLNKCSKLESLP-SSLCMFKSLTS-LEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCS 467 (785)
Q Consensus 390 ~l~l~~~~~l~~l~-~~~~~l~~L~~-L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~ 467 (785)
.+| ..|.++++++. +.+.+|.+....|..|..+++|++|++++|.++.+|....
T Consensus 69 -----------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------- 124 (350)
T 4ay9_X 69 -----------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK------------- 124 (350)
T ss_dssp -----------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-------------
T ss_pred -----------ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh-------------
Confidence 222 23455666554 3344455555556667777777777777777776654211
Q ss_pred CCccCCccccCCCCCCEEEeeCCcCcccCC-Ccccccc-ccceEEecCeeccccCcccCCCCCCcEEEccC-Cccccccc
Q 003936 468 SFESLPSRLYVSKSLTSLEIIDCKNFMRLP-DEIGNLE-YLKVLTIKGTAIREVPESLGQLSSLEWLVLSD-NNLQIIPE 544 (785)
Q Consensus 468 ~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~ 544 (785)
....++..|++.++.....++ ..+..+. .++.|++++|.++.+|.......+|++|++++ |.++.+|.
T Consensus 125 ---------~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 125 ---------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ---------CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred ---------cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH
Confidence 111456667776654444333 4555554 68889999999999887776778899999975 67788885
Q ss_pred -cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCC-CCCCccc
Q 003936 545 -SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENN-LDRIPEY 591 (785)
Q Consensus 545 -~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~lp~~ 591 (785)
.|..+++|+.|++++|+|+.+|.. .+.+|+.|.+.+|. ++.+|..
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred HHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 478899999999999999999864 36788888888877 8888853
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-19 Score=190.50 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=57.6
Q ss_pred ceEEEcCCCCcccccccccCC--CCCcEEecCCCccccCCCCCccccccceeccccccCccc-cccccccCCcccEEecC
Q 003936 67 LVSLKMPGSKVTQLWDDVQNL--VSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTE-THSSIQYLNKLEVLDLD 143 (785)
Q Consensus 67 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~L~ 143 (785)
++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|.+... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 555666655554 2334444 666666666666555555555666666666666664433 55556666666666666
Q ss_pred CCCCCCcCCCcc-ccccccEEeccCC
Q 003936 144 RCKSLTSLPTSI-HSKYLKRLVLRGC 168 (785)
Q Consensus 144 ~~~~~~~~p~~~-~l~~L~~L~ls~~ 168 (785)
+|......+..+ .+++|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCC
Confidence 665433444434 4555666666555
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-20 Score=198.39 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=93.7
Q ss_pred CCCcEEEeccccCC-CcCC---cccCCcccchhhhccCccccc--cChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 410 KSLTSLEIIDCKKL-ERLP---DELGNLEALEELRVEGTGIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 410 ~~L~~L~l~~~~~~-~~~p---~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
++|+.|++++|.+. +.++ ..+..+++|++|++++|.++. +... .|..+..+++|+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-------------------~~~~l~~~~~L~ 219 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------------------LLEGLAYCQELK 219 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------------HHTTGGGCTTCC
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH-------------------HHHHhhcCCCcc
Confidence 55566666665554 2233 234455566666666665551 1000 011222337888
Q ss_pred EEEeeCCcCc----ccCCCccccccccceEEecCeeccc-----cCccc--CCCCCCcEEEccCCcccc-----ccccc-
Q 003936 484 SLEIIDCKNF----MRLPDEIGNLEYLKVLTIKGTAIRE-----VPESL--GQLSSLEWLVLSDNNLQI-----IPESL- 546 (785)
Q Consensus 484 ~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~--~~l~~L~~L~Ls~n~l~~-----lp~~l- 546 (785)
.|++++|.+. ..+|..+..+++|+.|+|++|.++. +|..+ +.+++|++|+|++|.++. +|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 8888888875 5567777888888899998888874 35666 448999999999999987 88877
Q ss_pred cCCCCCCEEEcccCCCCCCC
Q 003936 547 NQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~lp 566 (785)
.++++|+.|++++|+++...
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS
T ss_pred hcCCCceEEEccCCcCCcch
Confidence 67899999999999998643
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=185.47 Aligned_cols=97 Identities=27% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCC-------
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSL------- 552 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L------- 552 (785)
++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|+|+.+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CC
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccc
Confidence 455555555555443 333 34556666666666666655 43 566666666666666665 433 45
Q ss_pred CEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 553 VSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 553 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.|+|++|+|+.+|..+..+++|+.|++++|+++
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 6666666666666666666666666666666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-19 Score=189.25 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=141.8
Q ss_pred CcEEecccCCCCCCCCccccCc--cccceeeccCcccccCCccccCccccceecccCccCCcc-ccccccCCCCCCEEEe
Q 003936 285 LTSLEIIDCPNFERLPDELGNL--QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY-ISSSIFKLKSVESIEI 361 (785)
Q Consensus 285 L~~L~l~~~~~~~~lp~~l~~l--~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 361 (785)
++.+++.++... +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 456666554322 3444555 677777887777776666566777788888887776544 6666667777777777
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEecccc-CCC-cCCcccCCcccchhh
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK-KLE-RLPDELGNLEALEEL 439 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~-~~~-~~p~~~~~l~~L~~L 439 (785)
++|. .-...+..++.+++|+.|++++|. +.+ .++..+..+++|++|
T Consensus 126 ~~~~--------------------------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 126 EGLR--------------------------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TTCB--------------------------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred cCcc--------------------------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 7764 111233445566777777777773 332 245555666666666
Q ss_pred hccCc-cccc--cChhhhhhhhcccccccCCCCccCCccccCCC-CCCEEEeeCCc--Cc-ccCCCccccccccceEEec
Q 003936 440 RVEGT-GIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCK--NF-MRLPDEIGNLEYLKVLTIK 512 (785)
Q Consensus 440 ~L~~n-~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~L~ 512 (785)
++++| .++. ++..+..+ + +|++|++++|. +. +.++..+..+++|+.|+++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l-----------------------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHV-----------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHS-----------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred cCCCCCCcChHHHHHHHHhc-----------------------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 66666 5553 34444433 5 77777777773 33 3345555566677777777
Q ss_pred Cee-cc-ccCcccCCCCCCcEEEccCCc-ccc-ccccccCCCCCCEEEcccCCCCCCCC-cCcCC-CCCCEEeCCCCCCC
Q 003936 513 GTA-IR-EVPESLGQLSSLEWLVLSDNN-LQI-IPESLNQLSSLVSLKLSNNNLERIPE-RLDPL-SSLKYLDLFENNLD 586 (785)
Q Consensus 513 ~n~-l~-~lp~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l-~~L~~L~l~~n~l~ 586 (785)
+|. ++ ..+..+..+++|++|++++|. +.. ....+..+++|+.|++++| +++ .+..+ ..|+.|++++|+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCc
Confidence 766 43 345556666777777777774 221 1124566777777777776 222 12222 22455556666655
Q ss_pred C
Q 003936 587 R 587 (785)
Q Consensus 587 ~ 587 (785)
.
T Consensus 307 ~ 307 (336)
T 2ast_B 307 T 307 (336)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=184.33 Aligned_cols=197 Identities=20% Similarity=0.210 Sum_probs=168.7
Q ss_pred HHHHhccc-----ccceeeeecCCCccccccCCCCCCCceEEEEecCCCCcccccccccCceEEEcCCCCcccccccccC
Q 003936 12 PYTFSKMT-----ELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQN 86 (785)
Q Consensus 12 ~~~f~~l~-----~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~ 86 (785)
+.+|.+++ +|+.|++++|.+ ..+|..+. ++|++|++++|.++.+| ..+++|++|++++|.++.+|. +..
T Consensus 47 ~~~~~~l~~C~~~~L~~L~Ls~n~L---~~lp~~l~-~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~ 120 (571)
T 3cvr_A 47 NEAVSLLKECLINQFSELQLNRLNL---SSLPDNLP-PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPA 120 (571)
T ss_dssp HHHHHHHHHHHHTTCSEEECCSSCC---SCCCSCCC-TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCT
T ss_pred cchhhhccccccCCccEEEeCCCCC---CccCHhHc-CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhc
Confidence 34788887 999999999988 45777664 78999999999999999 778999999999999999988 665
Q ss_pred CCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCccccccccEEecc
Q 003936 87 LVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLR 166 (785)
Q Consensus 87 l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls 166 (785)
+|++|+|++|.+.. +|. .+++|++|++++|.+.+ +|. .+++|++|++++|. ++.+|. +. ++|+.|+++
T Consensus 121 --~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~Ls 188 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEALDVS 188 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECC
T ss_pred --CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEEECc
Confidence 99999999998665 666 78999999999998654 776 67899999999975 555887 65 899999999
Q ss_pred CCcCCCCCCCcccccc-------ccccccccccccccCcchhccccccceeccccccccccchhhhcccc
Q 003936 167 GCSNLKNLPKMTSCHL-------RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229 (785)
Q Consensus 167 ~~~~l~~lp~~~~~~L-------~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 229 (785)
+| .++.+|. ...+| + .|++++|.++.+|.++..+++|+.|++++|.+.+..|..+..+..
T Consensus 189 ~N-~L~~lp~-~~~~L~~~~~~L~-~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 189 TN-LLESLPA-VPVRNHHSEETEI-FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SS-CCSSCCC-CC--------CCE-EEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CC-CCCchhh-HHHhhhcccccce-EEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 98 5778888 55577 8 999999999999999999999999999999999999988877655
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=163.75 Aligned_cols=179 Identities=18% Similarity=0.270 Sum_probs=120.9
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
...++++++++.++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------- 68 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------------- 68 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------
Confidence 356788888888888887654 5788888888776655554455555555555544
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
|.+.+..+..+..+++|++|++++|.++.+|...
T Consensus 69 ---------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 102 (251)
T 3m19_A 69 ---------------------------------NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV------------- 102 (251)
T ss_dssp ---------------------------------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------------
T ss_pred ---------------------------------CcCCccCHhHhccCCcCCEEECCCCcccccChhH-------------
Confidence 4444444444445555555555555555444211
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE- 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~- 544 (785)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|. .++.+++|++|+|++|+++.+|.
T Consensus 103 ---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 103 ---------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp ---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 1122666667777766665555566778888888888888888865 67888899999999999888764
Q ss_pred cccCCCCCCEEEcccCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~l 565 (785)
.+..+++|+.|++++|.+..-
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 688889999999999988643
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-18 Score=173.92 Aligned_cols=154 Identities=26% Similarity=0.329 Sum_probs=112.7
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|. +.. +++|++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~-----------------------l~~L~~L 117 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKD-----------------------LKKLKSL 117 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTT-----------------------CTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hcc-----------------------CCCCCEE
Confidence 3445555666666555444322 5566666666666666655442 222 2677777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. +..+++|+.|++++|+++.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 7777776553 3567788888888888888887 468889999999999999988776 88999999999999999988
Q ss_pred CCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 566 PERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 566 p~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
|. +..+++|+.|++++|+++..|.
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred hh-hccCCCCCEEECcCCcccCCcc
Confidence 75 8889999999999998776653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-19 Score=190.85 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=167.5
Q ss_pred ccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCC----ccccCcc-ccceeeccCcccccCC-ccccCc-----cccce
Q 003936 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLP----DELGNLQ-ALNRLIIDGTAIRELP-EGLGQL-----ALLSK 334 (785)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp----~~l~~l~-~L~~L~L~~n~i~~lp-~~l~~l-----~~L~~ 334 (785)
++.+...+.+|.......+|++|++.+|......+ ..+..++ +|++|++++|.++... ..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 44444555555555666779999999998544444 6678888 8999999999999653 345444 89999
Q ss_pred ecccCccCCcccccccc----CC-CCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccC-
Q 003936 335 LELKNCSELEYISSSIF----KL-KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCM- 408 (785)
Q Consensus 335 L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~- 408 (785)
|++++|.+....+..+. .+ ++|++|++++|. ++. .+ ...+...+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~----------------~~-----------~~~l~~~l~~~ 136 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSS----------------KS-----------SSEFKQAFSNL 136 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG----------------SC-----------HHHHHHHHTTS
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCc----------------HH-----------HHHHHHHHHhC
Confidence 99999998776665443 34 899999999885 111 00 0111122333
Q ss_pred CCCCcEEEeccccCCCc----CCcccCCcc-cchhhhccCccccccCh-hhhhhhhcccccccCCCCccCCccccCC-CC
Q 003936 409 FKSLTSLEIIDCKKLER----LPDELGNLE-ALEELRVEGTGIREVPK-SLAQLALSKLKLKKCSSFESLPSRLYVS-KS 481 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~----~p~~~~~l~-~L~~L~L~~n~i~~lp~-~~~~l~L~~L~l~~~~~~~~lp~~~~~~-~~ 481 (785)
.++|+.|++++|.+.+. ++..+...+ +|++|++++|.++.... .+... +... ++
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~ 197 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF-------------------LASIPAS 197 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------------HHTSCTT
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH-------------------HHhCCCC
Confidence 35889999999887643 333444554 89999999998885543 22211 1111 37
Q ss_pred CCEEEeeCCcCccc----CCCcccc-ccccceEEecCeeccccC-----cccCCCCCCcEEEccCCccc--------ccc
Q 003936 482 LTSLEIIDCKNFMR----LPDEIGN-LEYLKVLTIKGTAIREVP-----ESLGQLSSLEWLVLSDNNLQ--------IIP 543 (785)
Q Consensus 482 L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~Ls~n~l~--------~lp 543 (785)
|++|++++|.+... ++..+.. .++|++|+|++|.++..+ ..+..+++|++|++++|.+. .++
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 77777777776552 3334444 347888888888776543 34566778888888888733 245
Q ss_pred ccccCCCCCCEEEcccCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~ 564 (785)
..+..+++|+.|++++|++..
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCG
T ss_pred HHhccCCceEEEecCCCcCCC
Confidence 567778888888888887764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=169.34 Aligned_cols=132 Identities=27% Similarity=0.328 Sum_probs=102.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++.++ .+..+ ++|+.|
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l-----------------------~~L~~L 139 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHL-----------------------PQLESL 139 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG-GGGGC-----------------------TTCCEE
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCCh-hhcCC-----------------------CCCCEE
Confidence 5566677777777776544 22 3667777777777777777653 23333 788888
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+++..
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 8888887664 567888999999999999998876 8899999999999999999875 89999999999999998875
Q ss_pred CC
Q 003936 566 PE 567 (785)
Q Consensus 566 p~ 567 (785)
|.
T Consensus 216 ~~ 217 (291)
T 1h6t_A 216 PI 217 (291)
T ss_dssp CE
T ss_pred cc
Confidence 53
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-19 Score=200.24 Aligned_cols=203 Identities=22% Similarity=0.197 Sum_probs=146.2
Q ss_pred cCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 304 GNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 304 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
..++.|+.|+|++|.++.+|..++.+++|+.|++++|.....++.....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------------------------------- 394 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA------------------------------- 394 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------------------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHh-------------------------------
Confidence 5677888888888888888888888888888888765432222211000
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEE-eccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLE-IIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~-l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+...+..|..++.+++|+.|+ ++.+ .+..|+.+.+.+|.++.+|.
T Consensus 395 ------------~~~~~~~~~~l~~l~~L~~L~~l~~n-----------~~~~L~~l~l~~n~i~~l~~----------- 440 (567)
T 1dce_A 395 ------------LDPLLYEKETLQYFSTLKAVDPMRAA-----------YLDDLRSKFLLENSVLKMEY----------- 440 (567)
T ss_dssp ------------HCTGGGHHHHHHHHHHHHHHCGGGHH-----------HHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ------------cccccCCHHHHHHHHhcccCcchhhc-----------ccchhhhhhhhcccccccCc-----------
Confidence 001112233334444444444 2222 12344444444444443332
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
..|+.|++++|.+.+ +|. ++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|.++++
T Consensus 441 -----------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 441 -----------------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp -----------------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred -----------------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 458889999998776 566 8889999999999999999999999999999999999999998
Q ss_pred cccccCCCCCCEEEcccCCCCCC--CCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 543 PESLNQLSSLVSLKLSNNNLERI--PERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 543 p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
| .++.+++|+.|+|++|+++++ |..+..+++|+.|++++|+++.+|+.
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8 899999999999999999987 88899999999999999998877654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=182.89 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=113.2
Q ss_pred ccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcc
Q 003936 306 LQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385 (785)
Q Consensus 306 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~ 385 (785)
+..+..+.+..+.+..+.. +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~-------------------- 76 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-------------------- 76 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSC--------------------
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCC--------------------
Confidence 4456666777766665543 4667788888888876543 33 36666777777776663
Q ss_pred cCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccccccc
Q 003936 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKK 465 (785)
Q Consensus 386 lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~ 465 (785)
+..++. +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+..++. +..+
T Consensus 77 -------------l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l--------- 130 (605)
T 1m9s_A 77 -------------LTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDING-LVHL--------- 130 (605)
T ss_dssp -------------CCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCGG-GGGC---------
T ss_pred -------------CCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCcc-ccCC---------
Confidence 222222 5566777777777776543 22 45666666666666666665431 2222
Q ss_pred CCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCcccccccc
Q 003936 466 CSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES 545 (785)
Q Consensus 466 ~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 545 (785)
++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+..+| .
T Consensus 131 --------------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 131 --------------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp --------------TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred --------------CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 5666666666665543 345555666666666666655544 555666666666666655553 3
Q ss_pred ccCCCCCCEEEcccCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~l 565 (785)
+..+++|+.|+|++|++...
T Consensus 193 l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCSEEECCSEEEECC
T ss_pred HccCCCCCEEEccCCcCcCC
Confidence 55556666666666655543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=155.33 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=127.0
Q ss_pred cCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.++ .+ ..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-----------------------~~l~~L~~L~ 94 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PI-----------------------SGLSNLERLR 94 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GG-----------------------TTCTTCCEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hh-----------------------hcCCCCCEEE
Confidence 56778888888888765 555 5778888888888888766554 22 2348999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCc-cccccccccCCCCCCEEEcccCCCCC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNN-LQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
+++|.+.+..+..+..+++|+.|++++|.++. .|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|+++.
T Consensus 95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 99999988888889999999999999999986 57778999999999999998 88887 68999999999999999999
Q ss_pred CCCcCcCCCCCCEEeCCCCCCC
Q 003936 565 IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
++ .+..+++|++|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 87 7889999999999999865
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=151.61 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=80.0
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccccccCCCCCCE
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVS 554 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 554 (785)
+..+++|++|++++|.+....+..+..+++|+.|+|++|.++.+|. .+..+++|++|+|++|+++.+|..+..+++|+.
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSE
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCE
Confidence 3334777777777777755555666777777777777777777754 356777777777777777777777777777777
Q ss_pred EEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 555 LKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 555 L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
|+|++|+++.+| ..+..+++|+.|++++|++.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777777765 34677777777777777654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-16 Score=176.17 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=127.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+..+++|+.|++++|.+..++. ++.+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~----------------- 98 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----------------- 98 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-----------------
T ss_pred hhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-----------------
Confidence 4567778888888888887764 7778888888888877665444 6777888888887774
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..+| .+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.++.+ ..+..
T Consensus 99 ----------------l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~------- 151 (605)
T 1m9s_A 99 ----------------IKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSR------- 151 (605)
T ss_dssp ----------------CCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGS-------
T ss_pred ----------------CCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcc-------
Confidence 12222 35677888888888887665 2 4477788888888888877765 22333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.+...
T Consensus 152 ----------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 152 ----------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred ----------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 3788888888888776555 777888888888888888775 477788888888888887765
Q ss_pred c
Q 003936 543 P 543 (785)
Q Consensus 543 p 543 (785)
|
T Consensus 213 p 213 (605)
T 1m9s_A 213 P 213 (605)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=147.35 Aligned_cols=168 Identities=24% Similarity=0.381 Sum_probs=126.6
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN 492 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~ 492 (785)
+.++.+++.+. .+|..+ .++|++|++++|.++.++.. .+..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNG----------------------VFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTT----------------------TTTTCTTCSEEECCSSCC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChh----------------------hhcccccCcEEECCCCcc
Confidence 45555555432 334322 34677777777777665543 233448999999999998
Q ss_pred cccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCc-C
Q 003936 493 FMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPER-L 569 (785)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l 569 (785)
.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++++|.. +
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 87767778899999999999999998865 468899999999999999987754 78899999999999999988654 7
Q ss_pred cCCCCCCEEeCCCCCCC-CCcc------ccccCCCCCCccccc
Q 003936 570 DPLSSLKYLDLFENNLD-RIPE------YLRSFPTSIPSEFTS 605 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~-~lp~------~~~~~~~~ip~~l~~ 605 (785)
..+++|++|++++|++. ..|. ....+.|.+|..+..
T Consensus 145 ~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcc
Confidence 88999999999999843 4442 234566777777665
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=147.41 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=124.1
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~ 97 (785)
+.++.+++.+ ..+|.++. ++|++|++++|.++.++. ..+++|++|++++|+++.++.. +..+++|++|+|++
T Consensus 10 ~~v~c~~~~l---~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGR---TSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCC---SSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCc---cCCCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666655 45565543 678888888888887776 5788888888888888877654 67888888888888
Q ss_pred CccccCCCC-CccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCcCCCCC
Q 003936 98 SKLLTKLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 98 n~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~~l~~l 174 (785)
|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|... .+|.. + .+++|++|++++|...
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee---
Confidence 876654443 678888888888888766555556788888888888886544 44443 4 6788888888887422
Q ss_pred CCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccc
Q 003936 175 PKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229 (785)
Q Consensus 175 p~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 229 (785)
+.+++|+.|+++.|.+.+.+|..++.++.
T Consensus 162 --------------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --------------------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------------------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------------------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23456677777777777777766655443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=148.83 Aligned_cols=111 Identities=26% Similarity=0.418 Sum_probs=82.8
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccc-cccccCCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQII-PESLNQLSSLV 553 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~ 553 (785)
+..+++|++|++++|.+.+..|..+.++++|++|+|++|.++.+|.. |..+++|++|+|++|+++.+ |..+..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 33447788888888887777777788888888888888888877643 57778888888888888775 45677788888
Q ss_pred EEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 554 SLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 554 ~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
.|+|++|+++.+|. .+..+++|+.|++++|++.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888888877654 4677778888888887643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=148.44 Aligned_cols=150 Identities=20% Similarity=0.285 Sum_probs=113.5
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN 492 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~ 492 (785)
+.++++++.+. .+|..+. ..+++|++++|.++.++.. ..+..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~---------------------~~~~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEAT---------------------GIFKKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCC---------------------CCGGGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCch---------------------hhhccCCCCCEEECCCCcC
Confidence 46777776543 3554332 3356667777666655321 1233448899999999988
Q ss_pred cccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCC-CCcC
Q 003936 493 FMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERI-PERL 569 (785)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l 569 (785)
.+..+..+.++++|++|+|++|.++.++. .|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+++++ |..+
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 88777788889999999999999888854 488889999999999998886 56788889999999999999886 7778
Q ss_pred cCCCCCCEEeCCCCCCC
Q 003936 570 DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~ 586 (785)
..+++|+.|++++|++.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 88899999999988754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-17 Score=183.75 Aligned_cols=99 Identities=26% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc--cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII--PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L 557 (785)
++|+.|++++|.+. .+|..++.+++|+.|+|++|.++.+| .++.+++|+.|+|++|+++++ |..++.+++|+.|+|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 44555555555544 44555666667777777777777777 677788888888888888876 777888888888888
Q ss_pred ccCCCCCCCCcCc----CCCCCCEEeC
Q 003936 558 SNNNLERIPERLD----PLSSLKYLDL 580 (785)
Q Consensus 558 ~~n~l~~lp~~l~----~l~~L~~L~l 580 (785)
++|+++++|+.+. .+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888887765442 3677887764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=147.10 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=124.3
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
+..+|..+ .++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|... +..
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----------------------~~~ 86 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV----------------------FDS 86 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------TTT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh----------------------ccc
Confidence 34455443 378999999999999988999999999999999999998887542 223
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|+|++|+++.+|. .+..+++|+.|++
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 389999999999998887788899999999999999999999999999999999999999999874 5899999999999
Q ss_pred ccCCCCC
Q 003936 558 SNNNLER 564 (785)
Q Consensus 558 ~~n~l~~ 564 (785)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 9999874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=162.14 Aligned_cols=110 Identities=25% Similarity=0.421 Sum_probs=55.9
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..+..+.++++|+.|+|++|.++.++. .|..+++|++|+|++|+++.+ |..|..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 444444444444444444445555555555555555555432 345555555555555555553 344555555555555
Q ss_pred ccCCCCCCCCcC----cCCCCCCEEeCCCCCCCCCc
Q 003936 558 SNNNLERIPERL----DPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 558 ~~n~l~~lp~~l----~~l~~L~~L~l~~n~l~~lp 589 (785)
++|+++.+|..+ ..+++|+.|+|++|+|+.+|
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 555555554432 34555555555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=153.92 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=126.3
Q ss_pred cccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCE
Q 003936 405 SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTS 484 (785)
Q Consensus 405 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~ 484 (785)
.+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++.++. +..+ ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l-----------------------~~L~~ 89 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDL-----------------------TKLEE 89 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTC-----------------------SSCCE
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccC-----------------------CCCCE
Confidence 3567788888888888654 345 57788888888888888887765 4443 89999
Q ss_pred EEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 485 LEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 485 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|++++|++.+ +|.. .. ++|+.|++++|.++.++ .+..+++|+.|++++|+++.++ .++.+++|+.|++++|+++.
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 9999998866 3332 22 89999999999999886 4889999999999999999986 68899999999999999998
Q ss_pred CCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 565 IPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+ ..+..+++|+.|++++|++...|.
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 8 668899999999999999776653
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=147.52 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=114.7
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCC-CCCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKL-PDLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~-~~l~~l~~L~~L~Ls~n 121 (785)
++|++|++++|.++.+|. ..+++|++|++++|.++.++ .+..+++|++|++++|.+.... +.++.+++|++|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 788999999999888888 88889999999998877664 6788899999999998876543 46888899999999998
Q ss_pred cCccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchh
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIK 201 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~ 201 (785)
.+....+..++.+++|++|++++|..++.+|....+++|++|++++|. + ..++ .+.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i----------------------~~~~-~l~ 178 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-V----------------------HDYR-GIE 178 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-C----------------------CCCT-TGG
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-C----------------------cChH-Hhc
Confidence 877777888888899999999987767777643378888888887763 2 2222 455
Q ss_pred ccccccceeccccccc
Q 003936 202 CLSNIGELLIYSCKRL 217 (785)
Q Consensus 202 ~l~~L~~L~L~~~~~~ 217 (785)
.+++|+.|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 6777777777777643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=154.15 Aligned_cols=131 Identities=24% Similarity=0.320 Sum_probs=91.8
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|... . ++|+.|
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~------------------------~-~~L~~L 111 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP------------------------S-ACLSRL 111 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC------------------------C-SSCCEE
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc------------------------c-CcccEE
Confidence 3344555555555554433222 555666666666666655544210 0 567777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|+++..
T Consensus 112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred EccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 7777776653 24777888888888888888886 588899999999999999888 6788899999999999988876
Q ss_pred CC
Q 003936 566 PE 567 (785)
Q Consensus 566 p~ 567 (785)
|.
T Consensus 188 ~~ 189 (263)
T 1xeu_A 188 PV 189 (263)
T ss_dssp CE
T ss_pred cc
Confidence 54
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=142.01 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCcccccc--ccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIP--ESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.+| ..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 4555555555554433 455566667777777776666 5655566777777777777777765 5677777788888
Q ss_pred cccCCCCCCCC----cCcCCCCCCEEeCCCCCCCCCcc
Q 003936 557 LSNNNLERIPE----RLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 557 L~~n~l~~lp~----~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+++|.++.+|. .+..+++|++|++++|.+.++|+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88887777766 56777788888888887776664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=140.48 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=121.7
Q ss_pred CCCCCcEEEeccccCC-CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 408 MFKSLTSLEIIDCKKL-ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+. .+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~-----------------------~l~~L~~L~ 77 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLP-----------------------KLPKLKKLE 77 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC-----------------------CCSSCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc-----------------------cCCCCCEEE
Confidence 4578999999999987 67888889999999999999988876 3333 338999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccc----cccCCCCCCEEEcccC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPE----SLNQLSSLVSLKLSNN 560 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n 560 (785)
+++|.+.+.+|..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999998888888888999999999999999986 789999999999999999999887 7899999999999999
Q ss_pred CCCCCCCcC
Q 003936 561 NLERIPERL 569 (785)
Q Consensus 561 ~l~~lp~~l 569 (785)
.+.++|++.
T Consensus 158 ~~~~~~~~~ 166 (168)
T 2ell_A 158 EDQEAPDSD 166 (168)
T ss_dssp TSCBCCSSS
T ss_pred Chhhccccc
Confidence 999988754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=143.47 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCcccccc-ChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEee
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREV-PKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEII 488 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~ 488 (785)
++|+.|++++|.+.+..+..|..+++|+.|++++|.++.+ |..+.. +++|++|+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-----------------------l~~L~~L~Ls 88 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----------------------LRSLNSLVLY 88 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------------------CSSCCEEECC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------------------CcCCCEEECC
Confidence 6899999999988877777888999999999999988866 444444 4899999999
Q ss_pred CCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCC
Q 003936 489 DCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 489 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 564 (785)
+|.+....+..+.++++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.++. .+..+++|+.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999877777789999999999999999988 6778999999999999999999875 58899999999999998753
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=156.00 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=144.4
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhh--hh-hhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA--QL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~--~l-~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
+.++++++.+ ..+|..+. +.++.|+|++|.++.++.... .+ .|+.|++++|......+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l-~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCC-SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc-CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 6788888764 44676543 458999999999998876543 33 499999999988777778899999999999999
Q ss_pred CcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccccc----cCCCCCCEEEcccCCCCC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPESL----NQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n~l~~ 564 (785)
|++....+..+.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999888888899999999999999999988 678999999999999999999998764 679999999999999999
Q ss_pred CCC-cCcCCCC--CCEEeCCCCCCC
Q 003936 565 IPE-RLDPLSS--LKYLDLFENNLD 586 (785)
Q Consensus 565 lp~-~l~~l~~--L~~L~l~~n~l~ 586 (785)
+|. .+..++. |+.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 873 4666666 488999999865
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=139.75 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=117.4
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc----ccccCceEEEcCCCCcccccc-cccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI----LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~----~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls 96 (785)
+.+++++|.+ ..+|..+. ..+++|++++|.++.++. ..+++|++|++++|.++.++. .|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l---~~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKL---NKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCC---SSCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCc---ccCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 5788888877 56776554 567899999999988743 578899999999999988765 58889999999999
Q ss_pred CCccccCCCC-CccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 97 YSKLLTKLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 97 ~n~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
+|.+....+. +..+++|++|+|++|.+.+..|..+..+++|++|+|++|...+..|..+ .+++|++|++++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9987665553 8889999999999998777778888999999999999976666657667 78899999998875
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=164.68 Aligned_cols=137 Identities=22% Similarity=0.358 Sum_probs=109.4
Q ss_pred cCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCC
Q 003936 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLS 550 (785)
Q Consensus 471 ~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 550 (785)
..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+|..++.++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 44666777799999999999977 67777778999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC-Ccccc--------------ccCCCCCCcccccccc
Q 003936 551 SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR-IPEYL--------------RSFPTSIPSEFTSLRL 608 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-lp~~~--------------~~~~~~ip~~l~~l~~ 608 (785)
+|+.|+|++|.|+.+|..+..+++|+.|+|++|+|+. +|..+ ..+.+.+|..+..+++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEe
Confidence 9999999999999999999999999999999999874 44332 2356788888887654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-14 Score=136.03 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=79.6
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCccc-CCCCCCcEEEccCCccccccc--cccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPE--SLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+. ..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|.++.+|. .+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 4677777777776654 45677778888888888888776444 778888888888888877776 677888888888
Q ss_pred cccCCCCCCCCc----CcCCCCCCEEeCCCCCCC
Q 003936 557 LSNNNLERIPER----LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 557 L~~n~l~~lp~~----l~~l~~L~~L~l~~n~l~ 586 (785)
+++|.++.+|.. +..+++|+.||+++|++.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888877774 777888888888887644
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=132.50 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=96.0
Q ss_pred CCCCEEEeeCCcCcccCCC-ccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 556 (785)
.+|++|++++|.+.+..+. .++.+++|++|+|++|.++.+ |..|..+++|++|+|++|+++.++. .+..+++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5889999999998776664 588999999999999999988 7789999999999999999999764 589999999999
Q ss_pred cccCCCCCC-CCcCcCCCCCCEEeCCCCCCC
Q 003936 557 LSNNNLERI-PERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 557 L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~ 586 (785)
|++|+++++ |..+..+++|++|++++|+++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999985 788999999999999999865
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-14 Score=132.38 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=40.3
Q ss_pred cccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCcccccc--ccccCCCCCCEEEcccCCCCCCCC----cCcCC
Q 003936 500 IGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIP--ESLNQLSSLVSLKLSNNNLERIPE----RLDPL 572 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l 572 (785)
+..+++|+.|++++|.++. +|..+..+++|++|++++|.++++| ..++.+++|+.|++++|+++.+|. .+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 3344444444444444444 3444444555555555555555433 445555555555555555555443 34455
Q ss_pred CCCCEEeCC
Q 003936 573 SSLKYLDLF 581 (785)
Q Consensus 573 ~~L~~L~l~ 581 (785)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 555555544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-14 Score=131.02 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=111.0
Q ss_pred CCCCCcEEEeccccCC-CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 408 MFKSLTSLEIIDCKKL-ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+.. +++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-----------------------l~~L~~L~ 70 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK-----------------------LNKLKKLE 70 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCC-----------------------CTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhc-----------------------CCCCCEEE
Confidence 3478999999999987 68888889999999999999988876 33333 38999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccc----cccCCCCCCEEEccc
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPE----SLNQLSSLVSLKLSN 559 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 559 (785)
+++|.+.+.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998888888888999999999999999875 789999999999999999999876 688999999998864
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-14 Score=162.06 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceec
Q 003936 298 RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCN 377 (785)
Q Consensus 298 ~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~ 377 (785)
..+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~------------ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR------------ 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC------------
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc------------
Confidence 3455677788888888888888888877778888888888888766 777778888888888888874
Q ss_pred cCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhh
Q 003936 378 IDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQL 456 (785)
Q Consensus 378 l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l 456 (785)
+..+|..++.+++|+.|+|++|.+ +.+|..|+.+++|+.|+|++|.++ .+|..+...
T Consensus 282 ---------------------l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 282 ---------------------LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ---------------------CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ---------------------CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 345667778888888888888865 467877888888888888888888 445555444
Q ss_pred h--hcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 457 A--LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 457 ~--L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
. ...+++.+|...+.+| ..|+.|+++.|
T Consensus 340 ~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred chhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 3 3456778887777776 45667777766
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=129.25 Aligned_cols=106 Identities=28% Similarity=0.425 Sum_probs=89.8
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
++|++|++++|.+. .+|..+.++++|+.|++++|.++.++ ..|.++++|++|+|++|+++.++. .|..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 67888999988876 56778888999999999999998885 568889999999999999988764 6888999999999
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++.+|. .+..+++|+.|++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999998866 4788899999999998754
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=125.83 Aligned_cols=109 Identities=29% Similarity=0.420 Sum_probs=96.9
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|+.|++++|++.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 689999999999887777778999999999999999999865 468999999999999999998764 789999999999
Q ss_pred ccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCC
Q 003936 558 SNNNLERIPER-LDPLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 558 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~l 588 (785)
++|+++.+|.. +..+++|++|++++|++...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999998765 57899999999999996643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=127.39 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=95.8
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccccc--ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD--VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~ 123 (785)
++++++++.++.+|..-..+|++|++++|.++.++.. +..+++|++|+|++|.+....| .+..+++|++|+|++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 5778888888888873334888888888888877653 7888888888888888776666 578888888888888887
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
.+..+..++.+++|++|++++|...+..|..+ .+++|++|++++|.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 77767778888888888888877666667666 78888888888875
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=125.97 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=99.8
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCcc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~ 125 (785)
++++++++.++.+|..-.++|++|++++|.++.+|..+..+++|++|+|++|.+....+ .|..+++|++|+|++|.+..
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 56888888888888844578999999999999888888899999999999998766655 48889999999999998777
Q ss_pred ccccccccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCc
Q 003936 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCS 169 (785)
Q Consensus 126 ~~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~ 169 (785)
..+..|..+++|++|+|++|.. +.+|.. + .+++|+.|++++|+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCC
Confidence 7777889999999999999654 455553 4 78889999998874
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-15 Score=145.05 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=102.9
Q ss_pred cCCCCCcEEEeccccCCCcCCc------ccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCC
Q 003936 407 CMFKSLTSLEIIDCKKLERLPD------ELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~------~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~ 480 (785)
.....++.++++++.+.+..|. .+..+++|++|++++|.++.+| .+..+ +
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l-----------------------~ 70 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGM-----------------------E 70 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHH-----------------------T
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccC-----------------------C
Confidence 3445666666666666555554 6677777777777777777766 55555 7
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc--cccCCCCCCEEEcc
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE--SLNQLSSLVSLKLS 558 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~ 558 (785)
+|++|++++|.+. .+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 7777777777765 45666666777888888888777776 46777788888888888777654 57777888888888
Q ss_pred cCCCCCC-CCc----------CcCCCCCCEEe
Q 003936 559 NNNLERI-PER----------LDPLSSLKYLD 579 (785)
Q Consensus 559 ~n~l~~l-p~~----------l~~l~~L~~L~ 579 (785)
+|.++.. |.. +..+++|+.||
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8877653 332 56677777776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=137.86 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCc-EEEccCCcccccc-ccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLE-WLVLSDNNLQIIP-ESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 556 (785)
++|+.+++++|++....+..|.++.+|+.+++.+| ++.| +.+|.++++|+ .+++.+ +++.|+ .+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 45555555555444444444555555555555554 4444 23445555555 555554 444443 3345555555555
Q ss_pred cccCCCCCCCC-cCcCCCCCCEEe
Q 003936 557 LSNNNLERIPE-RLDPLSSLKYLD 579 (785)
Q Consensus 557 L~~n~l~~lp~-~l~~l~~L~~L~ 579 (785)
+++|+++.|++ .+.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 55555555432 344455555443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-13 Score=127.15 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=108.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.. +|......++|+.|++++|.++.+ ..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l-----------------------~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGF-----------------------PLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCC-----------------------CCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-ccc-----------------------ccCCCCCEE
Confidence 4567888999999987664 454333334888888888888765 222 334899999
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCc--ccCCCCCCcEEEccCCcccccccc----ccCCCCCCEEEccc
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE--SLGQLSSLEWLVLSDNNLQIIPES----LNQLSSLVSLKLSN 559 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~ 559 (785)
++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 999999887655666899999999999999999887 789999999999999999998875 89999999999999
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|...+
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-13 Score=139.67 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred cccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCC-EEEcccCCCCCC-CCcCcCCCCCCE
Q 003936 502 NLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLV-SLKLSNNNLERI-PERLDPLSSLKY 577 (785)
Q Consensus 502 ~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~-~L~L~~n~l~~l-p~~l~~l~~L~~ 577 (785)
.+++|+.+++++|.++.+| .+|.++++|+.|+|.+| ++.|+ .+|.++++|+ .+++.+ +++.| +..+.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3789999999999999996 57999999999999998 88887 4599999999 999999 88888 467899999999
Q ss_pred EeCCCCCCCCCccc
Q 003936 578 LDLFENNLDRIPEY 591 (785)
Q Consensus 578 L~l~~n~l~~lp~~ 591 (785)
|++++|.++.|++.
T Consensus 302 l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 302 VLATGDKITTLGDE 315 (329)
T ss_dssp EEECSSCCCEECTT
T ss_pred EEeCCCccCccchh
Confidence 99999999988754
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-14 Score=137.51 Aligned_cols=136 Identities=24% Similarity=0.266 Sum_probs=105.6
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
++.+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~---------------------- 92 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA---------------------- 92 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHH----------------------
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcC----------------------
Confidence 34455567777888888888887655 56 6777888888888888888888766665
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc--ccCCCCCCcEEEccCCccccc-cc----------c
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE--SLGQLSSLEWLVLSDNNLQII-PE----------S 545 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~l-p~----------~ 545 (785)
++|++|++++|++.+ +| .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+... |. .
T Consensus 93 -~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 -DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp -HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred -CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 788888888887765 34 57788899999999999988754 688899999999999998764 32 2
Q ss_pred ccCCCCCCEEEcccCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~ 563 (785)
+..+++|+.|+ +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 78899999987 55544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=114.85 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=88.5
Q ss_pred eEEEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCCC-CccccccceeccccccC
Q 003936 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLPD-LSLAQNLEILDLGYCSS 123 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~-l~~l~~L~~L~Ls~n~~ 123 (785)
.+.++++++.+..+|....++|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 35677777777777774446788888888888777654 57788888888888876544443 67888888888888876
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCS 169 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~ 169 (785)
.+..+..++.+++|++|++++|.. +.+|... .+++|++|++++|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 655555677888888888888644 4555543 57888888888874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=113.36 Aligned_cols=106 Identities=26% Similarity=0.406 Sum_probs=89.7
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 559 (785)
-+.++++++.+ +.+|..+. ++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.+|.. |..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36788888876 45666553 7899999999999988 66789999999999999999998865 68999999999999
Q ss_pred CCCCCCCCc-CcCCCCCCEEeCCCCCCCCCcc
Q 003936 560 NNLERIPER-LDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 560 n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
|+++.+|.. +..+++|++|++++|++...|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999998765 8899999999999999876553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-10 Score=122.99 Aligned_cols=222 Identities=9% Similarity=0.163 Sum_probs=141.0
Q ss_pred ccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
|.++ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.+ .....-...|.++++|+.+++.+|.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~---------------- 191 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK---------------- 191 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC----------------
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc----------------
Confidence 4443 5666666554 5555443 444 3577777765 3333334456666777777665542
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L 461 (785)
+..++.......+|+.+.+.++ +...-..+|.++++|+.+++..+ ++.++...+.
T Consensus 192 -----------------l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~------ 246 (401)
T 4fdw_A 192 -----------------ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR------ 246 (401)
T ss_dssp -----------------CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT------
T ss_pred -----------------ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc------
Confidence 2223322223466777777643 33334456777777777777653 4444432221
Q ss_pred ccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc-----cc-CcccCCCCCCcEEEcc
Q 003936 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-----EV-PESLGQLSSLEWLVLS 535 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~l-p~~~~~l~~L~~L~Ls 535 (785)
. .+|+.+.+.+ .+...-..+|.++++|+.+++.++.+. .+ +.+|.++++|+.++|.
T Consensus 247 ----------------~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 247 ----------------E-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ----------------T-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ----------------c-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 1 5677777743 344444567788888888888877665 45 4678889999999998
Q ss_pred CCcccccc-ccccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 536 DNNLQIIP-ESLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 536 ~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
++++.|+ .+|.++++|+.++|..+ ++.| +.++.++ +|+.+++.+|.+..+++
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred -CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 4587776 45888899999999554 7777 4567888 99999999988766654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-11 Score=111.09 Aligned_cols=106 Identities=28% Similarity=0.412 Sum_probs=88.5
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcc
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLS 558 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 558 (785)
+.+.++++++.+.. +|..+ .++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.+|.. |..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35678888887654 55544 37889999999999988 66789999999999999999998765 6899999999999
Q ss_pred cCCCCCCCC-cCcCCCCCCEEeCCCCCCCCCc
Q 003936 559 NNNLERIPE-RLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 559 ~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~lp 589 (785)
+|+++.+|. .+..+++|++|++++|+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999866 4889999999999999877544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=113.69 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=82.0
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..|..+.++++|+.|+|++|.++.+|.. |..+++|++|+|++|+++.+|.. +..+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7899999999999998899999999999999999999999765 68999999999999999998875 899999999999
Q ss_pred ccCCCCCCCCcC
Q 003936 558 SNNNLERIPERL 569 (785)
Q Consensus 558 ~~n~l~~lp~~l 569 (785)
++|.+...+..+
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 999998766533
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-11 Score=112.78 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=90.9
Q ss_pred chhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCee
Q 003936 436 LEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTA 515 (785)
Q Consensus 436 L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 515 (785)
.+.+++++|.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-------------------------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-------------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-------------------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC-------------------------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 3556777777777664321 789999999999999889999999999999999999
Q ss_pred ccccCc-ccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCCCC
Q 003936 516 IREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 516 l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp 566 (785)
++.+|. .|..+++|++|+|++|+++.+|. .+..+++|+.|+|++|.++..+
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999965 46899999999999999999886 4899999999999999987544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=118.08 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=117.0
Q ss_pred ccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 301 DELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 301 ~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
..|.+|++|+.+++.+|.++.++...-...+|+.+.+.++ ....-...|.++++|+.+++.++ ++
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~------------ 238 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VS------------ 238 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CC------------
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--cc------------
Confidence 4577788888888888888877765333577777777643 33333445556666666666542 11
Q ss_pred CCCcccCccccccCCCCCCccCCc-cccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhc
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPS-SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALS 459 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~ 459 (785)
.++. .|.. .+|+.+.+.++ +...-..+|.++
T Consensus 239 --------------------~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c-------------------------- 270 (401)
T 4fdw_A 239 --------------------TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYC-------------------------- 270 (401)
T ss_dssp --------------------EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTC--------------------------
T ss_pred --------------------Ccccccccc-CCccEEEeCCC-ccEEChhHhhCC--------------------------
Confidence 1111 1222 45555555322 222223334444
Q ss_pred ccccccCCCCccCCccccCCCCCCEEEeeCCcCc-----ccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEE
Q 003936 460 KLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNF-----MRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLV 533 (785)
Q Consensus 460 ~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~ 533 (785)
++|+.+.+.++... ...+..|.++++|+.+.+.+ .++.+ ..+|.++++|+.++
T Consensus 271 --------------------~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 271 --------------------PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp --------------------TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred --------------------CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 44444444444332 23344566677777777763 36666 45677788888888
Q ss_pred ccCCcccccc-ccccCCCCCCEEEcccCCCCCCC-CcCcCCC-CCCEEeCCCCCC
Q 003936 534 LSDNNLQIIP-ESLNQLSSLVSLKLSNNNLERIP-ERLDPLS-SLKYLDLFENNL 585 (785)
Q Consensus 534 Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~-~L~~L~l~~n~l 585 (785)
|..+ ++.|+ .+|.++ +|+.+++.+|.+..++ ..+..++ .++.|++..+.+
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 8544 66665 457777 8888888888777764 3455553 677787776543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-09 Score=112.80 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCCCCCCEE
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSL 555 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 555 (785)
.+.+|+.+.+.++ +...-..+|.++.+|+.+++..+ ++.| ..+|.++++|+.+++..+ ++.|+ .+|.++++|+.+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 3355666655443 22222344555556666555432 4444 344555566666655544 44443 345555556655
Q ss_pred EcccCCCCCCCCcCcCCCCCCE
Q 003936 556 KLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 556 ~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
++..+ ++.+...+.++++|+.
T Consensus 372 ~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 372 ELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEGG-GGGGGGGBCTTCEEEE
T ss_pred EECCC-CEEhhheecCCCCCcE
Confidence 55432 2333334444444443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-11 Score=131.93 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCCCcEEEeccccCCCcCCcc----cC-CcccchhhhccCccccc--cChhhhhhhhcccccccCCCCccCCccccCCCC
Q 003936 409 FKSLTSLEIIDCKKLERLPDE----LG-NLEALEELRVEGTGIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKS 481 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~~p~~----~~-~l~~L~~L~L~~n~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~ 481 (785)
+++|+.|++++|.+....... +. ..++|++|+|++|.++. +......+ ++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-----------------------~~ 127 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-----------------------LR 127 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-----------------------HT
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-----------------------Hh
Confidence 467888888888865532222 22 23678888888888763 21112222 46
Q ss_pred CCEEEeeCCcCcccCCCcc-----ccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccccc
Q 003936 482 LTSLEIIDCKNFMRLPDEI-----GNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPESL 546 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l 546 (785)
|+.|++++|.+.......+ ...++|++|+|++|.++. ++..+...++|++|+|++|.++. ++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 7777787777654322222 235678888888888764 44555677888888888888864 45667
Q ss_pred cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCCC
Q 003936 547 NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
...++|+.|+|++|.++. ++..+...++|++|+|++|+|+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 777888888888888874 34455567788888888888764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-09 Score=111.62 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=144.3
Q ss_pred eecCHHHHhcccccceeeeecCCCccccccCCCCCC--CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-
Q 003936 8 IQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW- 81 (785)
Q Consensus 8 ~~i~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~- 81 (785)
..|...||.++++|+.+.+..+ + ..+.+..+. .+|+.+++..+ ++.++. ..+..|+.+.+..+ ++.+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 4577788888888888888643 3 445554443 67777777543 555555 45566666655543 33332
Q ss_pred ccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--cccc
Q 003936 82 DDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKY 159 (785)
Q Consensus 82 ~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~ 159 (785)
..|.....++......... .....|..+++|+.+.+.++. ...-...|..+.+|+.+.+..+ ++.++... .+..
T Consensus 134 ~aF~~~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccccc-cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 2244443333332222211 111135666666666665432 2222334556666666666542 33332222 4455
Q ss_pred ccEEeccCCcCCCCCCCcc--ccccccccccccccccccC-cchhccccccceeccccccccccchhhhccccccccccc
Q 003936 160 LKRLVLRGCSNLKNLPKMT--SCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp~~~--~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (785)
|+.+.+..+.. .+.... ...++ .+.+.. .+..+. ..+..+..|+.+.+..+.. ......+..
T Consensus 210 L~~i~~~~~~~--~i~~~~~~~~~l~-~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~---------- 274 (394)
T 4fs7_A 210 LENMEFPNSLY--YLGDFALSKTGVK-NIIIPD-SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYN---------- 274 (394)
T ss_dssp CCBCCCCTTCC--EECTTTTTTCCCC-EEEECT-TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTT----------
T ss_pred cceeecCCCce--EeehhhcccCCCc-eEEECC-CceecccccccccccceeEEcCCCcc-eeecccccc----------
Confidence 55554433210 000000 01111 111111 111111 1223334444443332211 111111111
Q ss_pred CCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCC-CccccCccccceeecc
Q 003936 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERL-PDELGNLQALNRLIID 315 (785)
Q Consensus 237 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~ 315 (785)
|..++.+......+ ....+..+.+|+++.+.+. +..+ ...|.++++|+.+++.
T Consensus 275 -~~~l~~~~~~~~~i-----------------------~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 275 -CSGLKKVIYGSVIV-----------------------PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp -CTTCCEEEECSSEE-----------------------CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCC
T ss_pred -ccccceeccCceee-----------------------ccccccccccccccccccc--cceechhhhcCCCCCCEEEeC
Confidence 22222111111100 0112334566777766542 3333 3457788888888886
Q ss_pred CcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCC
Q 003936 316 GTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNC 364 (785)
Q Consensus 316 ~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 364 (785)
.+ ++.+.. .|.++++|+.+++..+ ....-..+|.++++|+.+++..+
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 43 666654 4778888888888764 33334456777888888887653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=113.02 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=84.9
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecC-eeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n 560 (785)
.++.+++..+..+|. +..+++|+.|+|++ |.++.+| ..|.++++|+.|+|++|+|+++| ..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666633445777 88888999999986 9999886 57889999999999999999866 46899999999999999
Q ss_pred CCCCCCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 561 NLERIPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 561 ~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+|+.+|..+.....|+.|+|.+|++....+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 999987665444449999999999875543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=110.94 Aligned_cols=92 Identities=29% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCccccCCCCCCEEEeeC-CcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCC
Q 003936 472 LPSRLYVSKSLTSLEIID-CKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQL 549 (785)
Q Consensus 472 lp~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 549 (785)
+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.++.++ ..|..+++|++|+|++|+|+.+|......
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 344 44448999999996 8888877788999999999999999999885 57899999999999999999988764443
Q ss_pred CCCCEEEcccCCCCC
Q 003936 550 SSLVSLKLSNNNLER 564 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~ 564 (785)
..|+.|+|.+|.+..
T Consensus 103 ~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 103 LSLQELVLSGNPLHC 117 (347)
T ss_dssp CCCCEEECCSSCCCC
T ss_pred CCceEEEeeCCCccC
Confidence 349999999999874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-10 Score=117.63 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=91.6
Q ss_pred CceEEEEecCCCCccccc--------ccccCceEEEcCCCCcccc--cccccCCCCCcEEecCCCccccCCC-CC-----
Q 003936 44 TELRYFEWHQFPLKTLNI--------LHWENLVSLKMPGSKVTQL--WDDVQNLVSLKRIDLKYSKLLTKLP-DL----- 107 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~--------~~l~~L~~L~L~~~~i~~l--~~~~~~l~~L~~L~Ls~n~~~~~~~-~l----- 107 (785)
+.|+.|++++|.++.... ...++|++|+|++|.++.. ..-...+++|+.|+|++|.+..... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567777777777653222 1235777777777776531 1112345677777777776433211 11
Q ss_pred ccccccceeccccccCcc----ccccccccCCcccEEecCCCCCCC----cCCCcc-ccccccEEeccCCcCCCCCCCcc
Q 003936 108 SLAQNLEILDLGYCSSLT----ETHSSIQYLNKLEVLDLDRCKSLT----SLPTSI-HSKYLKRLVLRGCSNLKNLPKMT 178 (785)
Q Consensus 108 ~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~~~~~~----~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~ 178 (785)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.... .++..+ ..++|++|++++|. ++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~------ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG------ 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC------
Confidence 234667777777776543 234445667777777777765322 122223 44567777776663 11
Q ss_pred ccccccccccccccccccCcchhccccccceeccccccccccchhhhc
Q 003936 179 SCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226 (785)
Q Consensus 179 ~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 226 (785)
......+...+...++|++|++++|.+.......+..
T Consensus 225 -----------~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 -----------DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp -----------HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 0111233344556677888888888776554444443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.4e-09 Score=108.82 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCCEEEeeCCcCcccCCCccc--cccccceEEecC--ee------ccccCccc--CCCCCCcEEEccCCcccc-cccc
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIG--NLEYLKVLTIKG--TA------IREVPESL--GQLSSLEWLVLSDNNLQI-IPES 545 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~--n~------l~~lp~~~--~~l~~L~~L~Ls~n~l~~-lp~~ 545 (785)
.++|+.|++..|.+.......+. .+++|+.|+|+. +. +..+...+ ..+++|+.|+|++|.+.. .+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 37788888877765443222332 577788887753 11 22222222 357889999998888764 2222
Q ss_pred c---cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 546 L---NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l---~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+ ..+++|+.|+|+.|.++. ++..+..+++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 357889999999888875 4556667788999999888765
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-06 Score=91.15 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred eecCHHHHhccc-ccceeeeecCCCccccccCCCCCC--CceEEEEecCCC---Cccccc---ccccCceEEEcCCCCcc
Q 003936 8 IQINPYTFSKMT-ELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFP---LKTLNI---LHWENLVSLKMPGSKVT 78 (785)
Q Consensus 8 ~~i~~~~f~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~---l~~lp~---~~l~~L~~L~L~~~~i~ 78 (785)
..|...||++++ .|+.+.+..+ + ..+.+..+. .+|+.+.+..+. ++.+.. ..+.+|+.+.+..+ ++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eEcCHhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 457788888884 5888888653 2 445454444 778887776653 445554 34556666555443 44
Q ss_pred cccc-cccCCCCCcEEecCCCccccCCC--CCccccccceecccc
Q 003936 79 QLWD-DVQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEILDLGY 120 (785)
Q Consensus 79 ~l~~-~~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~Ls~ 120 (785)
.+.. .|..+.+|+.+.+..+. ..++ .+..+.+|+.+.+.+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCT
T ss_pred eehhhhhhhhccccccccccee--eeecccceecccccccccccc
Confidence 4432 35666666666665442 2222 355666666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=86.94 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=74.4
Q ss_pred cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCC
Q 003936 475 RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSL 552 (785)
Q Consensus 475 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 552 (785)
.|..+.+|+.+.+.+... ......+.++++|+.+.+. +.++.++ .+|.++.+|+.++|..+ ++.|. .+|.++++|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 455667788887765432 2334567778888888885 4455663 56788888888888754 66665 458888888
Q ss_pred CEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCC
Q 003936 553 VSLKLSNNNLERIP-ERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 553 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~ 584 (785)
+.+.|.. .++.|. .++.++++|+.+++.++.
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 8888864 477774 457888888888887753
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-07 Score=99.68 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=48.6
Q ss_pred cCCCCCcEEecccCCC---------CCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccc
Q 003936 280 CMFKSLTSLEIIDCPN---------FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSI 350 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~---------~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 350 (785)
..+++|++|.+.+... ...++..+..+++|+.|.|+++.-..++. +. +++|++|++..|.+.......+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 3477888888765421 11244445667788888887763223443 32 6778888877766544333333
Q ss_pred c--CCCCCCEEEeeC
Q 003936 351 F--KLKSVESIEISN 363 (785)
Q Consensus 351 ~--~l~~L~~L~l~~ 363 (785)
. .+++|+.|+|+.
T Consensus 214 ~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHSBCTTCCEEEEEC
T ss_pred HHccCCCCcEEEEec
Confidence 2 567777777753
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.6e-05 Score=81.38 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=63.8
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEE
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSL 555 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 555 (785)
.+..|+.+.+..+ +...-...+.++.+|+.+.+..+ ++.++ ..|.++++|+.+.+.++.++.|+ .+|.++++|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3456666666543 22233345666677777776543 44443 45677777888888777777765 457777788888
Q ss_pred EcccCCCCCCC-CcCcCCCCCCEEeCC
Q 003936 556 KLSNNNLERIP-ERLDPLSSLKYLDLF 581 (785)
Q Consensus 556 ~L~~n~l~~lp-~~l~~l~~L~~L~l~ 581 (785)
.|..+ ++.|. .++.++++|+.+.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 77643 66663 356677777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-07 Score=87.33 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCCCCEEEeeCC-cCcc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cc
Q 003936 479 SKSLTSLEIIDC-KNFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 479 ~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp 543 (785)
.++|++|++++| .+.. .+...+...++|++|+|++|.++. +...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 378999999998 6643 234455667889999999998873 34556667889999999999874 56
Q ss_pred ccccCCCCCCEEEc--ccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 544 ESLNQLSSLVSLKL--SNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 544 ~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+...++|+.|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 77888889999999 7898874 4555666788999999998754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=77.97 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCCCcEEecccCCCCCCCC-ccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEE
Q 003936 282 FKSLTSLEIIDCPNFERLP-DELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESI 359 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 359 (785)
+..|+.+.+.. .+..++ ..|.++++|+.+.+.++.++.++. .|.++.+|+.+.+.++ ....-..+|.++.+|+.+
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 44555555432 122222 347778888888888888887765 4778888888888653 222333456677777777
Q ss_pred EeeC
Q 003936 360 EISN 363 (785)
Q Consensus 360 ~l~~ 363 (785)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 6643
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=9.2e-07 Score=83.90 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=38.3
Q ss_pred ccccceEEecCeeccc-----cCcccCCCCCCcEEEc--cCCcccc-----ccccccCCCCCCEEEcccCCCC
Q 003936 503 LEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVL--SDNNLQI-----IPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 503 l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
.++|++|+|++|.++. +...+...++|++|+| ++|.+.. +...+...++|+.|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455555555555542 3445566667777777 6677763 4455666677888888777654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.3e-06 Score=77.89 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=53.9
Q ss_pred ccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCC--CCCcc----ccccceecccccc-CccccccccccCC
Q 003936 64 WENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKL--PDLSL----AQNLEILDLGYCS-SLTETHSSIQYLN 135 (785)
Q Consensus 64 l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~--~~l~~----l~~L~~L~Ls~n~-~~~~~~~~l~~l~ 135 (785)
-.+|++||++++.|+.. -..+..+++|+.|+|++|...+.. ..++. .++|++|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 44677777777776632 233567788888888888643331 12333 2467788887775 3333334466677
Q ss_pred cccEEecCCCCCCCc
Q 003936 136 KLEVLDLDRCKSLTS 150 (785)
Q Consensus 136 ~L~~L~L~~~~~~~~ 150 (785)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777765554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.4e-06 Score=83.29 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCC--CCCEEEcccCCCCC-CCC-------cCcCCCCCCEEe
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLS--SLVSLKLSNNNLER-IPE-------RLDPLSSLKYLD 579 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~n~l~~-lp~-------~l~~l~~L~~L~ 579 (785)
..+..+++|+.|+|++|+++.+. .+..+. +|+.|+|++|.+.. +|. .+..+++|+.||
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33445566666666666665542 122222 66667777766653 332 245567777765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.1e-06 Score=82.82 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=30.2
Q ss_pred CCCCCcEEecCCCcccc--CCCC-CccccccceeccccccCccccccccccCC--cccEEecCCCCCCCcCC
Q 003936 86 NLVSLKRIDLKYSKLLT--KLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLN--KLEVLDLDRCKSLTSLP 152 (785)
Q Consensus 86 ~l~~L~~L~Ls~n~~~~--~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~~p 152 (785)
++++|+.|+|++|++.. .+|+ +..+++|++|+|++|.+.+. ..+..++ +|++|+|++|+....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45555555555555433 1222 33555555555555553332 1223233 55555555555444443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-06 Score=77.23 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=68.5
Q ss_pred cccccccCCCCCcEEecCCCccccC-CCCCccccccceeccccccCc-cccccccccC----CcccEEecCCCCCCCc--
Q 003936 79 QLWDDVQNLVSLKRIDLKYSKLLTK-LPDLSLAQNLEILDLGYCSSL-TETHSSIQYL----NKLEVLDLDRCKSLTS-- 150 (785)
Q Consensus 79 ~l~~~~~~l~~L~~L~Ls~n~~~~~-~~~l~~l~~L~~L~Ls~n~~~-~~~~~~l~~l----~~L~~L~L~~~~~~~~-- 150 (785)
.+|.....-.+|+.||+++|.+... +..+..+++|++|+|++|..+ ..--..+..+ ++|++|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4455443346899999999975333 335789999999999999743 3334445554 4799999999987774
Q ss_pred CCCccccccccEEeccCCcCCCC
Q 003936 151 LPTSIHSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 151 ~p~~~~l~~L~~L~ls~~~~l~~ 173 (785)
+.....+++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 22112789999999999987664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00051 Score=64.51 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCCEEEeeCC-cCcc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDC-KNFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
+.|+.|+|+++ .+.. .+-+.+..-..|+.|+|++|.++. +...+..-+.|++|+|++|.|.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67888888875 4432 233344555677777777777762 23344455677777777777763 445
Q ss_pred cccCCCCCCEEEcccC---CCCC-----CCCcCcCCCCCCEEeCCCCC
Q 003936 545 SLNQLSSLVSLKLSNN---NLER-----IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n---~l~~-----lp~~l~~l~~L~~L~l~~n~ 584 (785)
.+..-+.|+.|+|++| .+.. +.+.+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6666667777777754 3331 33344455667777776553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0057 Score=53.51 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=36.3
Q ss_pred EEEccCCccc--cccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 531 WLVLSDNNLQ--IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 531 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
.++.++++++ .+|..+. ++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665432 3577777777777777544 566777888888887643
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0066 Score=53.11 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=28.2
Q ss_pred EEEecCCCCc--ccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCc
Q 003936 48 YFEWHQFPLK--TLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSK 99 (785)
Q Consensus 48 ~L~l~~~~l~--~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~ 99 (785)
.++.+++.++ .+|..-..+|++|+|++|+|+.++.+ |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 55543344555666666666655443 4555555555555554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=59.38 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=68.1
Q ss_pred cccccccceEEecCe-ecc-----ccCcccCCCCCCcEEEccCCcccc-----ccccccCCCCCCEEEcccCCCCC----
Q 003936 500 IGNLEYLKVLTIKGT-AIR-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESLNQLSSLVSLKLSNNNLER---- 564 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~---- 564 (785)
+.+-+.|++|+|+++ .|. .+...+..-+.|+.|+|++|.+.. +.+.+..-+.|+.|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 776 345567777899999999999974 55667778899999999999983
Q ss_pred -CCCcCcCCCCCCEEeCCCCCC
Q 003936 565 -IPERLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 565 -lp~~l~~l~~L~~L~l~~n~l 585 (785)
+-+.+..-+.|++|+|++|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHhhCCceeEEECCCCcC
Confidence 455677778899999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 785 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.002 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 5e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.8 bits (159), Expect = 7e-12
Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 9/191 (4%)
Query: 393 LNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS 452
L + S + L + +L L + + + L +L L +L + I +
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL 259
Query: 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIK 512
L++LKL P + + +N + I NL+ L LT+
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLEDISPISNLKNLTYLTLY 315
Query: 513 GTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPL 572
I ++ + L+ L+ L ++N + + SL L+++ L +N + + L L
Sbjct: 316 FNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANL 372
Query: 573 SSLKYLDLFEN 583
+ + L L +
Sbjct: 373 TRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 7/155 (4%)
Query: 436 LEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMR 495
L+EL + G ++++ + L+ L L P L LT L++
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL-GANQISN 277
Query: 496 LPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSL 555
+ G + + P S L +L +L L NN+ I ++ L+ L L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP-VSSLTKLQRL 334
Query: 556 KLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590
+NN + + L L+++ +L N + +
Sbjct: 335 FFANNKVSDVSS-LANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 59/376 (15%), Positives = 117/376 (31%), Gaps = 31/376 (8%)
Query: 86 NLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC--SSLTETHSSIQYLNKLEVLDLD 143
L + L + + T + + L S+ ++YLN L ++
Sbjct: 20 ALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSI----DGVEYLNNLTQINFS 74
Query: 144 RCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCL 203
+ LT + K L +LV +N + +L + L +
Sbjct: 75 NNQ-LTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130
Query: 204 SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSE 263
L S + +IS+ + ++ +L+ L + S + S
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190
Query: 264 LKLKKCPRPESLPSGQCMFKSL------TSLEIID-CPNFERLPDELGNLQALNRLIIDG 316
L K ESL + + T+L+ + N + L +L L L +
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250
Query: 317 TAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFC 376
I L L L L++L+L + + + + ++ +
Sbjct: 251 NQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 377 NIDGSGIERIPSSVLKLNKCSKLESL---------PSSLCMFKSLTSLEIIDCKKLERLP 427
I S + ++ +KL+ L SSL ++ L ++ L
Sbjct: 310 TYLTLYFNNI-SDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN-QISDLT 367
Query: 428 DELGNLEALEELRVEG 443
L NL + +L +
Sbjct: 368 -PLANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.002
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 497 PDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLK 556
D L + T + + S L + L ++ I + + L++L +
Sbjct: 17 TDT--ALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQIN 72
Query: 557 LSNNNLERIPERLDPLSSLKYL 578
SNN L I L L+ L +
Sbjct: 73 FSNNQLTDITP-LKNLTKLVDI 93
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.003
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 526 LSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNL 585
L+ VL N+ S L + +L+ ++ I + ++ L++L ++ N L
Sbjct: 21 LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 78
Query: 586 DRIP 589
I
Sbjct: 79 TDIT 82
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.5 bits (153), Expect = 2e-11
Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 25/307 (8%)
Query: 287 SLEIIDC--PNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSEL 343
L ++ C E++P +L L + I E+ +G L L L L N
Sbjct: 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 344 EYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP 403
+ + L +E + +S LK PE + + N+ +K+
Sbjct: 69 KISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTL--------QELRVHENEITKVRKSV 119
Query: 404 SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKL 463
+ + L K ++ L +R+ T I +P+ L +L++L L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHL 178
Query: 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523
+ + L +L L + + N +L+ L + + +VP L
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238
Query: 524 GQLSSLEWLVLSDNNLQIIPES-------LNQLSSLVSLKLSNNNLERI---PERLDPLS 573
++ + L +NN+ I + + +S + L +N ++ P +
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298
Query: 574 SLKYLDL 580
+ L
Sbjct: 299 VRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 53/281 (18%), Positives = 99/281 (35%), Gaps = 38/281 (13%)
Query: 376 CNIDGSGIERIPSS------VLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE 429
G+E++P +L L E K+L +L +I+ K + P
Sbjct: 15 VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 430 LGNLEALEELRVEGTGIREVPKSLAQLA--LSKLKLKKCSSFESLPSRLYVSKSLTSLEI 487
L LE L + ++E+P+ + + L + + +S+ + L + L
Sbjct: 75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGT 133
Query: 488 IDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ-IIPESL 546
K+ ++ L + I T I +P+ L SL L L N + + SL
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL 191
Query: 547 NQLSSLVSLKLS------------------------NNNLERIPERLDPLSSLKYLDLFE 582
L++L L LS NN L ++P L ++ + L
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251
Query: 583 NNLDRIPEYLRSFPTSIP--SEFTSLRLSVDLRNCLKLDPN 621
NN+ I P + ++ + L + ++ P+
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.1 bits (113), Expect = 2e-06
Identities = 47/273 (17%), Positives = 84/273 (30%), Gaps = 16/273 (5%)
Query: 98 SKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS 157
L K+P L + +LDL + L L L L K P +
Sbjct: 19 DLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 158 -KYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKR 216
L+RL L LK LP+ L + I ++ S+ N ++
Sbjct: 78 LVKLERLYLSKN-QLKELPEKMPKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
Query: 217 LENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLP 276
L++ Q ++ + R + +P EL L +
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT-------ELHLDGNKITKVDA 188
Query: 277 SGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLE 336
+ +L L + L N L L ++ + ++P GL + +
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 248
Query: 337 LKNCSELEYISSSIFKLKSVESIEISNCSNLKG 369
L N + + I S+ F + ++ G
Sbjct: 249 LHNNN-ISAIGSNDFCPPG----YNTKKASYSG 276
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 44/286 (15%)
Query: 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCS 341
K+L +L +I+ + P L L RL + ++ELPE + + + + +
Sbjct: 54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHEN 110
Query: 342 ELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLES 401
E+ + S+F + + + LK + + + + +
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN------GAFQGMKKLSYIRIADTNITT 164
Query: 402 LPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461
+P L SLT L + K + L L L +L + I
Sbjct: 165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------------- 209
Query: 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE 521
+ + L ++ +++P + + +Y++V+ + I +
Sbjct: 210 ---VDNGSLANTPHLREL-------HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 522 S-------LGQLSSLEWLVLSDNNLQ---IIPESLNQLSSLVSLKL 557
+ + +S + L N +Q I P + + +++L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 502 NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNN 561
L+ L + + E+P LE L+ S N+L +PE +L L + N
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYNP 335
Query: 562 LERIPERLDPLSSLK 576
L P+ + + L+
Sbjct: 336 LREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 66/330 (20%), Positives = 117/330 (35%), Gaps = 17/330 (5%)
Query: 135 NKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE 194
+ L+L+ L+SLP +L+ LV C++L LP++ L+S L + ++
Sbjct: 38 RQAHELELNNLG-LSSLPELP--PHLESLVAS-CNSLTELPEL-PQSLKSLL-VDNNNLK 91
Query: 195 ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGT 254
L L +G K E +SS K+ +++ + + P+L +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 255 RSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLII 314
+ L ++ + L+ I+ N EL NL L +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 315 DGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP 374
D ++ LP+ L L+ + E S F S + +
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 375 FCNIDGSGIERIPS-SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNL 433
N S + PS L ++ KL LP+ + L I L +P+ N
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERL----IASFNHLAEVPELPQN- 325
Query: 434 EALEELRVEGTGIREVPKSLAQLALSKLKL 463
L++L VE +RE P + L++
Sbjct: 326 --LKQLHVEYNPLREFPDIPES--VEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 38/344 (11%)
Query: 279 QCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELK 338
C+ + LE+ + LP+ +L+ L+ ++ ELPE L L+
Sbjct: 34 DCLDRQAHELELNNL-GLSSLPELPPHLE---SLVASCNSLTELPE------LPQSLKSL 83
Query: 339 NCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSK 398
+ S +E SN + N I + ++ LK
Sbjct: 84 LVDNNNLKALSDLP----PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139
Query: 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLAL 458
+ + E+ + L + + + + + +S+
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-------LKKLPDLPLSLESIVAGNN 192
Query: 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE 518
+L + + L + + L +L + + + ++
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 252
Query: 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYL 578
G L + + I + SL L +SNN L +P L+ L
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERL 309
Query: 579 DLFENNLDRIPEY-------------LRSFPTSIPSEFTSLRLS 609
N+L +PE LR FP IP LR++
Sbjct: 310 IASFNHLAEVPELPQNLKQLHVEYNPLREFP-DIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 8/197 (4%)
Query: 512 KGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDP 571
+ A+ + + L L L++ L +PE L SL S N+L +PE
Sbjct: 25 REMAVSRLRDCL--DRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPEL--- 76
Query: 572 LSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGW 631
SLK L + NNL + + S +L + + + +K
Sbjct: 77 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 136
Query: 632 MKQSVNGETYITKSMYFPGNEIPKWFRHQSTGSTISLKTPQPTGYNKLMGFAFCVVVACS 691
+ E+ + + + P L +
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196
Query: 692 VSECCRHESVEDDRKCN 708
+ E + N
Sbjct: 197 LPELQNLPFLTTIYADN 213
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 4e-07
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 492 NFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSS 551
+ + + L + L + +R +P +L L LE L SDN L+ + + L
Sbjct: 8 KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPR 66
Query: 552 LVSLKLSNNNLERIP--ERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPS 601
L L L NN L++ + L L L+L N+L + +PS
Sbjct: 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.004
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEY 591
L L+ +L ++ L QL + L LS+N L +P L L L+ L +N L+ +
Sbjct: 3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 592 LRSFPTSIPS----EFTSLRLSVDLRNC-----LKLDPNELSEI 626
L +C L L N L +
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 29/208 (13%)
Query: 406 LCMFKSLTSLEIIDC--KKLERLPDELGNLEALEELRVEGTGIREVP-------KSLAQL 456
+C + S ++C + L LP +L L + + L QL
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI 516
L + +L K +LP + S L+ + + ++ + ++ ++ A+
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 517 REVP----------------ESLGQLSSLEWLVLSDNN--LQIIPESLNQLSSLVSLKLS 558
R + L + + NN ++ LN L +L +L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 559 NNNLERIPERLDPLSSLKYLDLFENNLD 586
N+L IP+ L + L N
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 9e-05
Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 13/207 (6%)
Query: 364 CSNLKGFPEIPFCNIDGSGIERIPSS------VLKLNKCSKLESLPSSLCMFKSLTSLEI 417
S + E+ N D + +P +L L++ ++L + LT L +
Sbjct: 6 VSKVASHLEV---NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 418 IDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477
+ + D L L L + ++ +P L + + SLP
Sbjct: 63 DRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGT--AIREVPESLGQLSSLEWLVLS 535
+ LP + L L +L+ L+L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 536 DNNLQIIPESLNQLSSLVSLKLSNNNL 562
+N+L IP+ L L N
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 5/138 (3%)
Query: 528 SLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL-----ERIPERLDPLSSLKYLDLFE 582
SL+ ++ + + + L + S+ + LS N + + E + L+ + +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 583 NNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCLKLDPNELSEIIKDGWMKQSVNGETYI 642
R+ + + + +R E + D K + Y+
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 643 TKSMYFPGNEIPKWFRHQ 660
+ P Q
Sbjct: 129 HNNGLGPQAGAKIARALQ 146
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL-----QIIPESLNQLSSLVSLKLSNN 560
LK+ I + V L + S++ +VLS N + + + E++ L + S+
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 561 NLERIPERLDP 571
R+ + +
Sbjct: 70 FTGRVKDEIPE 80
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 518 EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562
+P+ L QL L L +S NNL L +NN
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 534 LSDNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNL 585
L +N + +P+ L QL L SL +S NNL + L N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 25/254 (9%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ--NLEILDLGYCSS 123
+++ + P S + Q + + ++ +DL S + L+Q L+ L L
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLR 183
+++ + L L+L C + RL S + +
Sbjct: 84 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143
Query: 184 STLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIR-IHRCPNLQ 242
+ + + + L+ C L ++ S + + + + LQ
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203
Query: 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN---FERL 299
L + C P + L+L + P +L +L++ + L
Sbjct: 204 HLSLSRCYDI------IPETLLELGEIP-------------TLKTLQVFGIVPDGTLQLL 244
Query: 300 PDELGNLQALNRLI 313
+ L +LQ
Sbjct: 245 KEALPHLQINCSHF 258
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 528 SLEWLVLSDNNL--QIIPESLNQLSSLVSLKLSNNNL-----ERIPERLDPLSSLKYLDL 580
++ L + L E L L ++L + L + I L +L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 581 FENNL-DRIPEYLRSFPTSIPSEFTSLRLS 609
N L D + + + L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 527 SSLEWLVLSDNNL-----QIIPESLNQLSSLVSLKLSNNNL-----ERIPERL-DPLSSL 575
S L L L+D ++ + +L SL L LSNN L ++ E + P L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 576 KYLDLFENNL-DRIPEYLRSFPTSIPS 601
+ L L++ + + + L++ PS
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPS 455
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 506 LKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNL-----QIIPESLNQLSSLVSLKLS 558
++ L I+ + + E L L + + L D L + I +L +L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 559 NNNL-----ERIPERL-DPLSSLKYLDL 580
+N L + + L P ++ L L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 523 LGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDL 580
L LS L L DN + I L L +L+ + L NN + + L S+L + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQL 549
+ + NL L L I ++ L L +L + L +N + + L
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANT 216
Query: 550 SSLVSLKLSN 559
S+L + L+N
Sbjct: 217 SNLFIVTLTN 226
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 540 QIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIP 589
++ + + S V L +S + +P L+ L L+ NL ++P
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLK-LSNNNLERIP 566
+ S L +S + +P L +L L+ S NL+++P
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP 239
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQL 549
N + + L L L+++ I ++ L L+ L+ L LS N++ + +L L
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGL 199
Query: 550 SSLVSLKLSN 559
+L L+L +
Sbjct: 200 KNLDVLELFS 209
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.92 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.9 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.88 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.87 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.79 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.75 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.62 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.56 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.5 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.44 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.4 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.39 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.38 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.32 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.26 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.17 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.1 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.06 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.05 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.98 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.02 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.91 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.44 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.94 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.58 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.11 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=4.7e-25 Score=236.71 Aligned_cols=146 Identities=23% Similarity=0.329 Sum_probs=101.3
Q ss_pred cCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..+++|+.|++++|.+.+.. .+..+++|+.|+++++.++.+++. .. ++.++.+.
T Consensus 238 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~-~~-----------------------~~~l~~l~ 291 (384)
T d2omza2 238 ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPL-AG-----------------------LTALTNLE 291 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGG-TT-----------------------CTTCSEEE
T ss_pred hcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcc-cc-----------------------cccccccc
Confidence 34455555555555443322 144555666666666655554421 11 25667777
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 566 (785)
+..|.+.+ ...+..+++++.|++++|.++.+++ +..+++|++|++++|+++.++ .++++++|++|++++|++++++
T Consensus 292 ~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~ 367 (384)
T d2omza2 292 LNENQLED--ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT 367 (384)
T ss_dssp CCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred cccccccc--ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCCh
Confidence 77766554 2346667788888888888887754 778889999999999888876 5888899999999999998876
Q ss_pred CcCcCCCCCCEEeCCCC
Q 003936 567 ERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 567 ~~l~~l~~L~~L~l~~n 583 (785)
+ +.++++|+.|+|++|
T Consensus 368 ~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 368 P-LANLTRITQLGLNDQ 383 (384)
T ss_dssp G-GTTCTTCSEEECCCE
T ss_pred h-hccCCCCCEeeCCCC
Confidence 4 788899999999886
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.92 E-value=5.5e-24 Score=228.27 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=84.8
Q ss_pred cCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..+++|+.|+++++.+.+.. .+..++.++.+++++|.++.++. +..+ ++++.|+
T Consensus 260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~-~~~~-----------------------~~l~~L~ 313 (384)
T d2omza2 260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-ISNL-----------------------KNLTYLT 313 (384)
T ss_dssp TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG-GGGC-----------------------TTCSEEE
T ss_pred cccccCCEeeccCcccCCCC--ccccccccccccccccccccccc-cchh-----------------------cccCeEE
Confidence 34455555555555443321 24455555556666665554432 2222 6777788
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
+++|++.+.. .+..+++|++|++++|.++.++ .++++++|++|++++|++++++. +.++++|+.|+|++|
T Consensus 314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred CCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence 8877766542 2677888888888888888876 48889999999999999988765 888999999999887
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.90 E-value=2.2e-24 Score=224.30 Aligned_cols=248 Identities=20% Similarity=0.271 Sum_probs=186.5
Q ss_pred CCcEEecccCCCCC--CCCccccCccccceeeccC-cccc-cCCccccCccccceecccCccCCccccccccCCCCCCEE
Q 003936 284 SLTSLEIIDCPNFE--RLPDELGNLQALNRLIIDG-TAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESI 359 (785)
Q Consensus 284 ~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 359 (785)
++++|++.++...+ .+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.+.+..+..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 56777777765544 4677777777777777775 5665 677777777777777777777777666667777777777
Q ss_pred EeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccc-hh
Q 003936 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEAL-EE 438 (785)
Q Consensus 360 ~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-~~ 438 (785)
++++|. ....+|..+..+++|+.+++++|.+.+.+|..+..+..+ +.
T Consensus 131 ~l~~N~--------------------------------~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~ 178 (313)
T d1ogqa_ 131 DFSYNA--------------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ECCSSE--------------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred cccccc--------------------------------ccccCchhhccCcccceeeccccccccccccccccccccccc
Confidence 777664 223455666777777777777777777777776666664 56
Q ss_pred hhccCccccc-cChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc
Q 003936 439 LRVEGTGIRE-VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR 517 (785)
Q Consensus 439 L~L~~n~i~~-lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 517 (785)
+++++|+++. .|..+.. .....+++.++...+.+|..+..+++++.++++++.+.
T Consensus 179 l~~~~n~l~~~~~~~~~~------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 179 MTISRNRLTGKIPPTFAN------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EECCSSEEEEECCGGGGG------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred cccccccccccccccccc------------------------cccccccccccccccccccccccccccccccccccccc
Confidence 6677777663 3333333 34457888888888888888888899999999998888
Q ss_pred ccCcccCCCCCCcEEEccCCccc-cccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCC-CCCC
Q 003936 518 EVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENN-LDRI 588 (785)
Q Consensus 518 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~-l~~l 588 (785)
..+..++.+++|+.|+|++|+++ .+|+.++++++|++|+|++|+|++ +|+ +.++++|+.+++++|+ +...
T Consensus 235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred ccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence 66667888999999999999998 599999999999999999999984 775 5788999999999998 6544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=1.2e-21 Score=202.56 Aligned_cols=256 Identities=21% Similarity=0.269 Sum_probs=182.4
Q ss_pred ccCCC--CCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCC
Q 003936 291 IDCPN--FERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNL 367 (785)
Q Consensus 291 ~~~~~--~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 367 (785)
.+|.. ++.+|..+. +++++|+|++|+|+.+|. .|.++++|++|++++|.+.+..|..+.++++|+.|++++|. +
T Consensus 15 ~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l 91 (305)
T d1xkua_ 15 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-L 91 (305)
T ss_dssp EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-C
T ss_pred EEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-c
Confidence 45554 567787663 679999999999999986 58899999999999999888888889999999999999885 3
Q ss_pred CCCC-----CCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCC--CcCCcccCCcccchhhh
Q 003936 368 KGFP-----EIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKL--ERLPDELGNLEALEELR 440 (785)
Q Consensus 368 ~~lp-----~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~ 440 (785)
+.+| .+..+....|.+..++.. .+.....++.++...+... ...+..+..+++|+.++
T Consensus 92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~---------------~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 92 KELPEKMPKTLQELRVHENEITKVRKS---------------VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156 (305)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHH---------------HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CcCccchhhhhhhhhccccchhhhhhh---------------hhhccccccccccccccccccCCCccccccccccCccc
Confidence 3332 222333333333222111 1223334444444444321 12233344444555555
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV- 519 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l- 519 (785)
+++|.++.+|. .+ +++|+.|++++|......+..+.+++.++.|++++|.++.+
T Consensus 157 l~~n~l~~l~~-----------------------~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~ 211 (305)
T d1xkua_ 157 IADTNITTIPQ-----------------------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211 (305)
T ss_dssp CCSSCCCSCCS-----------------------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred cccCCccccCc-----------------------cc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccc
Confidence 55554444432 22 27899999999998888888888899999999999999888
Q ss_pred CcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCc-------CcCCCCCCEEeCCCCCCCCCc
Q 003936 520 PESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-------LDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 520 p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-------l~~l~~L~~L~l~~n~l~~lp 589 (785)
+..+.++++|++|+|++|+++.+|.++..+++|+.|+|++|+|+.++.. ...+.+|+.|++++|+++..+
T Consensus 212 ~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~ 288 (305)
T d1xkua_ 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288 (305)
T ss_dssp TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred cccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence 5677889999999999999999998999999999999999999887542 345678999999999977443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.87 E-value=2.3e-22 Score=208.76 Aligned_cols=229 Identities=22% Similarity=0.322 Sum_probs=193.0
Q ss_pred cccceeeccCcccc---cCCccccCccccceecccC-ccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 307 QALNRLIIDGTAIR---ELPEGLGQLALLSKLELKN-CSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 307 ~~L~~L~L~~n~i~---~lp~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
.+++.|+|+++.+. .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~----------------- 112 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----------------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-----------------
Confidence 35889999998887 5888999999999999987 56777899999999999999999885
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhhhccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLALSKL 461 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~L~~L 461 (785)
.....+..+..+.+|+.+++++|...+.+|..+.+++.|+.+++++|.++ .+|..+..+
T Consensus 113 ---------------l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l----- 172 (313)
T d1ogqa_ 113 ---------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF----- 172 (313)
T ss_dssp ---------------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----
T ss_pred ---------------ccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc-----
Confidence 11223345677888999999999888888988999999999999888877 667665544
Q ss_pred ccccCCCCccCCccccCCCC-CCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCcc
Q 003936 462 KLKKCSSFESLPSRLYVSKS-LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNL 539 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l 539 (785)
.+ ++.+++++|++.+..|..+..+..+ .+++.++... .+|..+..+++|+.+++++|.+
T Consensus 173 ------------------~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 233 (313)
T d1ogqa_ 173 ------------------SKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------------CTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------------cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 45 4889999999999989888877655 6888887766 5678889999999999999999
Q ss_pred ccccccccCCCCCCEEEcccCCCC-CCCCcCcCCCCCCEEeCCCCCCC-CCccc
Q 003936 540 QIIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPEY 591 (785)
Q Consensus 540 ~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~lp~~ 591 (785)
...+..++.+++|+.|+|++|+++ .+|+++.++++|++|+|++|+|+ .+|+.
T Consensus 234 ~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 287 (313)
T d1ogqa_ 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 987778999999999999999999 59999999999999999999987 67753
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=1.1e-20 Score=195.24 Aligned_cols=209 Identities=20% Similarity=0.237 Sum_probs=160.0
Q ss_pred CCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 299 LPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 299 lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
.|..|.++++|++|++++|+++.+|..+ ...++.|++.+|......+..+.....+..++...+...
T Consensus 71 ~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~----------- 137 (305)
T d1xkua_ 71 SPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK----------- 137 (305)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC-----------
T ss_pred chhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccc-----------
Confidence 3455777788888888888888887643 457888888887776655555666677777777665411
Q ss_pred CCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhh
Q 003936 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLAL 458 (785)
Q Consensus 379 ~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L 458 (785)
.....+..+..+++|+.+++++|.+.. +|.. .+++|+.|++++|.++..+.
T Consensus 138 -------------------~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~------- 188 (305)
T d1xkua_ 138 -------------------SSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDA------- 188 (305)
T ss_dssp -------------------GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECT-------
T ss_pred -------------------ccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCCh-------
Confidence 112233456778899999999997654 4433 35778888888887764332
Q ss_pred cccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCc
Q 003936 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNN 538 (785)
Q Consensus 459 ~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 538 (785)
..+..++.++.|++++|.+.+..+..+.++++|++|+|++|.++.+|.++..+++|++|+|++|+
T Consensus 189 ---------------~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~ 253 (305)
T d1xkua_ 189 ---------------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253 (305)
T ss_dssp ---------------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred ---------------hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence 22333489999999999999888899999999999999999999999999999999999999999
Q ss_pred ccccccc-------ccCCCCCCEEEcccCCCCC
Q 003936 539 LQIIPES-------LNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 539 l~~lp~~-------l~~l~~L~~L~L~~n~l~~ 564 (785)
|+.++.. ...+.+|+.|+|++|.++.
T Consensus 254 i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 9987632 3457889999999999874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=1.7e-18 Score=182.49 Aligned_cols=84 Identities=32% Similarity=0.364 Sum_probs=66.6
Q ss_pred ceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 507 KVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 507 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
...++..+.+..++ ..+++|++|+|++|+++.+|.. +++|+.|++++|+|+++|+. +++|++|++++|+|+
T Consensus 267 ~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 267 YYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp CEEECCSSCCSEEC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred cccccccCcccccc---ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCC
Confidence 44455555555554 3467899999999999998864 57899999999999999864 468999999999999
Q ss_pred CCccccccCCCCCCccccccc
Q 003936 587 RIPEYLRSFPTSIPSEFTSLR 607 (785)
Q Consensus 587 ~lp~~~~~~~~~ip~~l~~l~ 607 (785)
++|+. |.+++.|+
T Consensus 338 ~lp~~--------~~~L~~L~ 350 (353)
T d1jl5a_ 338 EFPDI--------PESVEDLR 350 (353)
T ss_dssp SCCCC--------CTTCCEEE
T ss_pred CCCcc--------ccccCeeE
Confidence 99987 88888754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.1e-19 Score=183.16 Aligned_cols=199 Identities=22% Similarity=0.244 Sum_probs=142.1
Q ss_pred CccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCc
Q 003936 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIE 384 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~ 384 (785)
+...+.+++.+++.++.+|..+. +++++|+|++|.+.+..+..+.++++|++|++++|.
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~------------------- 66 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------------------- 66 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-------------------
T ss_pred ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-------------------
Confidence 34455667788888888887653 568888888877665555566667777777766653
Q ss_pred ccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccc
Q 003936 385 RIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLK 464 (785)
Q Consensus 385 ~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~ 464 (785)
+..++. ++.+++|+.|++++|++ +.++..+..+
T Consensus 67 --------------l~~l~~-~~~l~~L~~L~Ls~N~l------------------------~~~~~~~~~l-------- 99 (266)
T d1p9ag_ 67 --------------LTKLQV-DGTLPVLGTLDLSHNQL------------------------QSLPLLGQTL-------- 99 (266)
T ss_dssp --------------CCEEEC-CSCCTTCCEEECCSSCC------------------------SSCCCCTTTC--------
T ss_pred --------------cccccc-ccccccccccccccccc------------------------cccccccccc--------
Confidence 111211 23455555555555543 3333222222
Q ss_pred cCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc
Q 003936 465 KCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP 543 (785)
Q Consensus 465 ~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp 543 (785)
++|+.|++++|.+....+..+..+.+++.|++++|.++.+| ..+..+++|+.|++++|+++.+|
T Consensus 100 ---------------~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 100 ---------------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp ---------------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred ---------------cccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence 66667777777666666666777888888888888888885 45677899999999999999876
Q ss_pred -ccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 544 -ESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 544 -~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|++|+|++|+|+.+|+++..+++|+.|+|++|++.
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 4588899999999999999999999999999999999999753
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=7.8e-19 Score=178.97 Aligned_cols=212 Identities=25% Similarity=0.373 Sum_probs=137.4
Q ss_pred CCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCc
Q 003936 296 FERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP 374 (785)
Q Consensus 296 ~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~ 374 (785)
++.+|..+. +.+++|+|++|+|+.+|. .|..+++|++|++++|.+....+..+..+..++.+.+..+..++.++
T Consensus 23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~--- 97 (284)
T d1ozna_ 23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD--- 97 (284)
T ss_dssp CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC---
T ss_pred CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc---
Confidence 455555432 456777888887777765 36777777777777777666666656666666666655544222211
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhh
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA 454 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~ 454 (785)
+..+..+++|+.|++++|......+..+...
T Consensus 98 ----------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------------------- 128 (284)
T d1ozna_ 98 ----------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------------------- 128 (284)
T ss_dssp ----------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------------------
T ss_pred ----------------------------chhhcccccCCEEecCCcccccccccccchh---------------------
Confidence 2334555666666666665444444444444
Q ss_pred hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEE
Q 003936 455 QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLV 533 (785)
Q Consensus 455 ~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~ 533 (785)
++|+.+++++|.+.+..+..+..+++|+.|++++|.++.+ +..|.++++|++++
T Consensus 129 -------------------------~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~ 183 (284)
T d1ozna_ 129 -------------------------AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (284)
T ss_dssp -------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred -------------------------cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence 4455555555555544445566666777777777777766 45667778888888
Q ss_pred ccCCccccc-cccccCCCCCCEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 534 LSDNNLQII-PESLNQLSSLVSLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 534 Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
+++|+++.+ |..|..+++|+.|++++|++.++| ..+..+++|++|++++|++.
T Consensus 184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 888887774 566788888888888888887764 45677888888888888755
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.2e-18 Score=177.50 Aligned_cols=134 Identities=26% Similarity=0.385 Sum_probs=111.6
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEE
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSL 555 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 555 (785)
++++|++|++++|......+..+....+|+.+++++|.++.+| ..|..+++|+.|++++|+++.+| ..+.++++|+.+
T Consensus 103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l 182 (284)
T d1ozna_ 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (284)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchh
Confidence 3377888888888877666777888999999999999999995 56889999999999999999976 568999999999
Q ss_pred EcccCCCCCC-CCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeeccc
Q 003936 556 KLSNNNLERI-PERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 556 ~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
++++|+++.+ |..+..+++|++|++++|++..+|+... .+ ..+|++++++-+...|
T Consensus 183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--~~--~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--AP--LRALQYLRLNDNPWVC 239 (284)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TT--CTTCCEEECCSSCEEC
T ss_pred hhhhccccccChhHhhhhhhccccccccccccccccccc--cc--ccccCEEEecCCCCCC
Confidence 9999999986 8889999999999999999988875321 11 4667886665555556
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.75 E-value=1.2e-16 Score=167.97 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=54.2
Q ss_pred ccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCC
Q 003936 503 LEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLF 581 (785)
Q Consensus 503 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 581 (785)
+++|++|++++|.++++|.. +++|+.|+|++|+++.+|.. +++|+.|++++|+++.+|+. ..+|+.|.+.
T Consensus 283 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPDI---PESVEDLRMN 352 (353)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred CCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCCcc---ccccCeeECc
Confidence 56788888888888888753 57888999999999888864 46789999999999988864 3457777664
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.5e-18 Score=168.83 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=137.6
Q ss_pred hcccccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccccccCCCCCcE
Q 003936 16 SKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDDVQNLVSLKR 92 (785)
Q Consensus 16 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 92 (785)
++++.+..++.+++++ ..+|+++. +++++|++++|.++.+|. ..+++|++|+|++|+|+.++. ++.+++|++
T Consensus 7 ~~~~~~~~v~C~~~~L---~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNL---TALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCC---SSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCE
T ss_pred cccCCCeEEEccCCCC---CeeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccc
Confidence 3455666667777666 56777664 578888888888888875 578888888888888887753 567888888
Q ss_pred EecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcC
Q 003936 93 IDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSN 170 (785)
Q Consensus 93 L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~ 170 (785)
|+|++|++....+.+..+++|++|++++|......+..+..+.++++|++++|. +..+|... .+++|+.+++++|.
T Consensus 82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~- 159 (266)
T d1p9ag_ 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN- 159 (266)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred cccccccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhccccccc-
Confidence 888888766555567888888888888887766666777888888888888854 44444444 67888888888874
Q ss_pred CCCCCCc-cc--cccccccccccccccccCcchhccccccceecccccc
Q 003936 171 LKNLPKM-TS--CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKR 216 (785)
Q Consensus 171 l~~lp~~-~~--~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 216 (785)
++.++.. +. .+|+ .|++++|.++.+|.++..+++|+.|+|++|+.
T Consensus 160 l~~~~~~~~~~l~~L~-~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 160 LTELPAGLLNGLENLD-TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CSCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccccCccccccccccc-eeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence 4444432 21 4555 66666666666666666666666666666654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=8.2e-17 Score=157.81 Aligned_cols=209 Identities=19% Similarity=0.243 Sum_probs=138.4
Q ss_pred ccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcc
Q 003936 306 LQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385 (785)
Q Consensus 306 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~ 385 (785)
+.++..++++.++++++. .+..+.+|++|++.+|.+.. + ..+..+++|++|++++|.
T Consensus 18 l~~~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~-------------------- 74 (227)
T d1h6ua2 18 LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQ-------------------- 74 (227)
T ss_dssp HHHHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSC--------------------
T ss_pred HHHHHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCce--------------------
Confidence 444555677777776543 35667888888888887553 3 346777888888877764
Q ss_pred cCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccccccc
Q 003936 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKK 465 (785)
Q Consensus 386 lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~ 465 (785)
+..++ .+..+++|+.+++++|.... ++ .+..+++|+.++++++....++..
T Consensus 75 -------------i~~~~-~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~~------------- 125 (227)
T d1h6ua2 75 -------------ITDLA-PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPL------------- 125 (227)
T ss_dssp -------------CCCCG-GGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGG-------------
T ss_pred -------------eeccc-cccccccccccccccccccc-cc-cccccccccccccccccccccchh-------------
Confidence 11111 25567778888888776542 32 366677777777777665544321
Q ss_pred CCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCcccccccc
Q 003936 466 CSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES 545 (785)
Q Consensus 466 ~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 545 (785)
...+.++.+.++++.+.... .+...++|+.|++++|.+...+. ++++++|++|++++|+++.++.
T Consensus 126 -----------~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~- 190 (227)
T d1h6ua2 126 -----------AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (227)
T ss_dssp -----------TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred -----------ccccchhhhhchhhhhchhh--hhccccccccccccccccccchh-hcccccceecccCCCccCCChh-
Confidence 11266777777776654432 35566777777777777766544 6777788888888887777654
Q ss_pred ccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCC
Q 003936 546 LNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFE 582 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~ 582 (785)
++++++|++|+|++|+++++|. +.++++|+.|++++
T Consensus 191 l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence 6777788888888888877763 67777888887753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=3.9e-16 Score=152.87 Aligned_cols=190 Identities=22% Similarity=0.309 Sum_probs=143.8
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+..+.+|+.|++.+|.+++++ .+..+++|++|++++|.+.+..+ +..+++++.+++++|.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~----------------- 96 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----------------- 96 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-----------------
T ss_pred HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccc-----------------
Confidence 455778888888888888874 57888888888888887665433 6778888888887764
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
++.++ .+..+++|+.+++++|...+. ..+...+.++.+.++++.+...+. +.
T Consensus 97 ----------------~~~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-~~-------- 148 (227)
T d1h6ua2 97 ----------------LKNVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-LA-------- 148 (227)
T ss_dssp ----------------CSCCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GG--------
T ss_pred ----------------ccccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh-hc--------
Confidence 11221 356778888888888875543 235566777777777776654432 12
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
.+++|+.|++++|.+.... .++++++|+.|++++|.++.++. ++++++|++|+|++|+++++
T Consensus 149 ---------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i 210 (227)
T d1h6ua2 149 ---------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (227)
T ss_dssp ---------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred ---------------cccccccccccccccccch--hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCC
Confidence 2278999999998875433 37889999999999999998865 88999999999999999998
Q ss_pred cccccCCCCCCEEEccc
Q 003936 543 PESLNQLSSLVSLKLSN 559 (785)
Q Consensus 543 p~~l~~l~~L~~L~L~~ 559 (785)
+. ++++++|+.|++++
T Consensus 211 ~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 211 SP-LANTSNLFIVTLTN 226 (227)
T ss_dssp GG-GTTCTTCCEEEEEE
T ss_pred cc-cccCCCCCEEEeeC
Confidence 74 88999999999974
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=4e-16 Score=150.50 Aligned_cols=146 Identities=27% Similarity=0.358 Sum_probs=95.0
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+ ++ .++.+++|+.|++++|.++++|. +..+ ++|+.|
T Consensus 64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~-l~~l-----------------------~~L~~L 117 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSS-LKDL-----------------------KKLKSL 117 (210)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGG-GTTC-----------------------TTCCEE
T ss_pred HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccccc-cccc-----------------------cccccc
Confidence 3445556666666665443 22 24556666666666666655542 2222 666777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.... ...+..++.++.+++++|.++..+ .+..+++|+++++++|++++++. +.++++|+.|++++|+++++
T Consensus 118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l 193 (210)
T d1h6ta2 118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (210)
T ss_dssp ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCC
Confidence 776666532 234566677777777777776654 35667788888888888877653 77788888888888888877
Q ss_pred CCcCcCCCCCCEEeCCC
Q 003936 566 PERLDPLSSLKYLDLFE 582 (785)
Q Consensus 566 p~~l~~l~~L~~L~l~~ 582 (785)
| .+.++++|++|+|++
T Consensus 194 ~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 194 R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp G-GGTTCTTCSEEEEEE
T ss_pred h-hhcCCCCCCEEEccC
Confidence 6 477788888888753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=6e-16 Score=147.91 Aligned_cols=142 Identities=26% Similarity=0.387 Sum_probs=82.3
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|++|++++|.+.+. +. ++++++|+.|++++|.+..++. +..+ ++|+.|
T Consensus 58 l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l-----------------------~~L~~L 111 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANL-----------------------TNLTGL 111 (199)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTC-----------------------TTCSEE
T ss_pred cccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccccc-cccc-----------------------cccccc
Confidence 44566667777766655432 22 5666666666666666555442 2222 666666
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|..... ..+..+++|+.|++++|.+..++ .+..+++|++|++++|+++.++ .++++++|+.|++++|+++++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i 187 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDI 187 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCC
Confidence 6666655432 23455666666666666665554 3556666666666666666654 255666666666666666665
Q ss_pred CCcCcCCCCCCEE
Q 003936 566 PERLDPLSSLKYL 578 (785)
Q Consensus 566 p~~l~~l~~L~~L 578 (785)
| .+.++++|++|
T Consensus 188 ~-~l~~L~~L~~L 199 (199)
T d2omxa2 188 S-VLAKLTNLESL 199 (199)
T ss_dssp G-GGGGCTTCSEE
T ss_pred c-cccCCCCCCcC
Confidence 4 35556666554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.8e-15 Score=148.36 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=61.8
Q ss_pred CCEEEeeCCcCcccCCCcccccc-ccceEEecCeeccccCcccCCCCCCcEE-EccCCcccccccc-ccCCCCCCEEEcc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLE-YLKVLTIKGTAIREVPESLGQLSSLEWL-VLSDNNLQIIPES-LNQLSSLVSLKLS 558 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L-~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 558 (785)
+..+...++.+....+..+.+++ .++.|++++|.++.++......++++++ ++++|+++++|.. |.++++|++|+++
T Consensus 130 l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls 209 (242)
T d1xwdc1 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209 (242)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECT
T ss_pred cccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECC
Confidence 33333344443333334444443 6677777777777776555555555555 4566677777653 6778888888888
Q ss_pred cCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCc
Q 003936 559 NNNLERIPER-LDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 559 ~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp 589 (785)
+|+++.+|.. +.++++|+.+++. .++.+|
T Consensus 210 ~N~l~~l~~~~~~~l~~L~~l~~~--~l~~lp 239 (242)
T d1xwdc1 210 RTRIHSLPSYGLENLKKLRARSTY--NLKKLP 239 (242)
T ss_dssp TSCCCCCCSSSCTTCCEEESSSEE--SSSCSC
T ss_pred CCcCCccCHHHHcCCcccccCcCC--CCCcCC
Confidence 8888877653 3444444443332 255555
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=5.8e-15 Score=140.93 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=129.2
Q ss_pred CCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEe
Q 003936 408 MFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEI 487 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l 487 (785)
.+++++.|++++|.+.. + +.++.+++|++|++++|.++.++. +..+ ++|++|++
T Consensus 38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l-----------------------~~L~~L~l 91 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP-LKNL-----------------------TKLVDILM 91 (199)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTC-----------------------TTCCEEEC
T ss_pred HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc-ccCC-----------------------cccccccc
Confidence 56789999999998654 3 347788899999999998887764 4443 89999999
Q ss_pred eCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCC
Q 003936 488 IDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPE 567 (785)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 567 (785)
++|..... + .+.++++|+.|+++++.+..++. +..+++|+.|++++|++..++ .+..+++|+.|++.+|+++++++
T Consensus 92 ~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~ 167 (199)
T d2omxa2 92 NNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP 167 (199)
T ss_dssp CSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG
T ss_pred cccccccc-c-ccccccccccccccccccccccc-cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc
Confidence 99987543 2 47899999999999999887654 788999999999999998876 58899999999999999999874
Q ss_pred cCcCCCCCCEEeCCCCCCCCCccc
Q 003936 568 RLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 568 ~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
+.++++|++|++++|+++++|..
T Consensus 168 -l~~l~~L~~L~ls~N~i~~i~~l 190 (199)
T d2omxa2 168 -LANLTTLERLDISSNKVSDISVL 190 (199)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGG
T ss_pred -ccCCCCCCEEECCCCCCCCCccc
Confidence 88999999999999999988753
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.2e-14 Score=143.73 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=83.8
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC--CCccccccceecccc-cc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEILDLGY-CS 122 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~Ls~-n~ 122 (785)
++++.++..++++|..-++++++|++++|+|+.+|.. |.++++|++|++++|.+...++ .|..+++++++.+.. |.
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~ 90 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence 5777888888888873346889999999999888764 7889999999999988766554 478888999988765 44
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCcccccccc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLK 161 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~ 161 (785)
+....+..+.++++|++|++++|. +...+....+..++
T Consensus 91 l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~ 128 (242)
T d1xwdc1 91 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQ 128 (242)
T ss_dssp CCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSS
T ss_pred ccccccccccccccccccccchhh-hccccccccccccc
Confidence 455566778889999999998864 34444333333333
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=2.6e-14 Score=137.59 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=106.8
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
.+|++|+++++.++.++. ..+++|++|++++|+++.++ .+..+++|++|++++|++ +.++.+..+++|+.|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~~~~ 123 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG 123 (210)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC
T ss_pred cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccc-ccccccccccccccccccccc
Confidence 567778888888777777 77778888888888777765 367778888888887764 345567777788888887776
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
.. .+ ..+..+++|+.+++++|. +...+....+++|+++++++|. +.. ++ .+.+
T Consensus 124 ~~-~~-~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~-l~~----------------------i~-~l~~ 176 (210)
T d1h6ta2 124 IS-DI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISD----------------------IV-PLAG 176 (210)
T ss_dssp CC-CC-GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCC----------------------CG-GGTT
T ss_pred cc-cc-cccccccccccccccccc-cccccccccccccccccccccc-ccc----------------------cc-cccC
Confidence 43 22 357777778888877754 3343333366777777777663 222 22 2556
Q ss_pred cccccceeccccccccccchhhhccccccccccc
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (785)
+++|++|++++|.+.. ++ .+..+++|+.|+++
T Consensus 177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 6677777777776543 33 35666666666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.8e-16 Score=170.48 Aligned_cols=107 Identities=26% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCCCEEEeeCCcCcccCCC----ccccccccceEEecCeeccc-----cCcccC-CCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCKNFMRLPD----EIGNLEYLKVLTIKGTAIRE-----VPESLG-QLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~-----lp~~~~-~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
..|+.+++++|.+...... .+...++|++|+|++|.++. ++..+. ..+.|++|+|++|+++. +++
T Consensus 312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 391 (460)
T d1z7xw1 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 391 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence 3455555555554332111 22334466666666666642 333332 35668888888888764 455
Q ss_pred cccCCCCCCEEEcccCCCCC-----CCCcCc-CCCCCCEEeCCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLER-----IPERLD-PLSSLKYLDLFENNLD 586 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~-----lp~~l~-~l~~L~~L~l~~n~l~ 586 (785)
.+..+++|++|+|++|+++. +.+.+. +.+.|+.|++.+|.+.
T Consensus 392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 66677888888888888763 222332 3446888888888754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.48 E-value=7.2e-14 Score=132.33 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=96.4
Q ss_pred CCCCEEEeeCCcCcccC-CCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRL-PDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 556 (785)
+++++|+|++|++...+ +..|.++++|+.|+|++|.+..+ +..+..+++|++|+|++|+++.+|. .|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 68999999999997644 56789999999999999999977 5678889999999999999999864 589999999999
Q ss_pred cccCCCCCCC-CcCcCCCCCCEEeCCCCCCCCCc
Q 003936 557 LSNNNLERIP-ERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 557 L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
|++|+|+.+| ..+..+++|++|+|++|++...+
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccccccCHHHhcCCccccccccccccccccc
Confidence 9999999985 55789999999999999876544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-14 Score=146.30 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=49.2
Q ss_pred eEEEcCCCCcccccccccCCCCCcEEecCCCccccC-CCC-CccccccceeccccccCccccccccccCCcccEEecCCC
Q 003936 68 VSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTK-LPD-LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRC 145 (785)
Q Consensus 68 ~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~-~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~ 145 (785)
..+.++...+...........+|++||+++|.+... ++. +..+++|++|++++|.+....+..++.+++|++|++++|
T Consensus 26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c 105 (284)
T d2astb2 26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105 (284)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence 344444443332222233344555566655543222 111 345556666666665544445555555666666666665
Q ss_pred CCCCc--CCCcc-ccccccEEeccCCc
Q 003936 146 KSLTS--LPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 146 ~~~~~--~p~~~-~l~~L~~L~ls~~~ 169 (785)
..++. +.... .+++|++|++++|.
T Consensus 106 ~~itd~~l~~l~~~~~~L~~L~ls~c~ 132 (284)
T d2astb2 106 SGFSEFALQTLLSSCSRLDELNLSWCF 132 (284)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ccccccccchhhHHHHhcccccccccc
Confidence 54442 11112 45566666666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=8.6e-16 Score=167.60 Aligned_cols=108 Identities=24% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCCEEEeeCCcCcccCCC----cc-ccccccceEEecCeecccc-----CcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCKNFMRLPD----EI-GNLEYLKVLTIKGTAIREV-----PESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~----~~-~~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
+.++.+++++|.+...... .+ .....|+.++++++.++.. ...+...++|++|+|++|+++. +++
T Consensus 283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~ 362 (460)
T d1z7xw1 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362 (460)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence 6788888888876432111 11 2345799999999887643 3344566789999999999863 455
Q ss_pred ccc-CCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCCC
Q 003936 545 SLN-QLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 545 ~l~-~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
.+. ..+.|++|+|++|+++. +++.+..+++|++|+|++|+++.
T Consensus 363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence 554 56789999999999974 45667778999999999999873
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.2e-13 Score=119.83 Aligned_cols=106 Identities=26% Similarity=0.309 Sum_probs=93.5
Q ss_pred CEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCC
Q 003936 483 TSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 483 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 562 (785)
+.|++++|++.. ++ .++.+++|++|++++|.++++|..++.+++|+.|++++|.++.+| .+..+++|+.|++++|++
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 77 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCcc
Confidence 578899998864 34 488999999999999999999988999999999999999999987 489999999999999999
Q ss_pred CCCCC--cCcCCCCCCEEeCCCCCCCCCccc
Q 003936 563 ERIPE--RLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 563 ~~lp~--~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
+++|. .+..+++|+.|++++|+++..+..
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~ 108 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCchhhcCCCCCCEEECCCCcCCcCccH
Confidence 98864 578899999999999998776654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=2.8e-13 Score=117.44 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=89.5
Q ss_pred EEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCcc
Q 003936 47 RYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 125 (785)
|+|++++|.++.++. ..+++|++|++++|+|+.+|.++..+++|++|++++|.+. .+|.+..+++|++|++++|.+..
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~i~~ 79 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQ 79 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCS
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCccCC
Confidence 678899999988888 8888999999999999998888888999999999998754 56778888999999999987544
Q ss_pred c-cccccccCCcccEEecCCCCCCC--cCCCcc--ccccccEE
Q 003936 126 E-THSSIQYLNKLEVLDLDRCKSLT--SLPTSI--HSKYLKRL 163 (785)
Q Consensus 126 ~-~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~--~l~~L~~L 163 (785)
. ....++.+++|++|++++|+... ..+..+ .+++|+.+
T Consensus 80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 80 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 2 22467888899999998865432 223333 45666554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1e-13 Score=126.75 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=68.4
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLS 558 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 558 (785)
.++++|++++|++... +..+..+++|+.|++++|.+++++. +..+++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus 18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~ 95 (162)
T d1a9na_ 18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 95 (162)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCccccccccccccceec
Confidence 4555555555554332 3344555666666666666666643 66667777777777777766654 3456777777777
Q ss_pred cCCCCCCCC--cCcCCCCCCEEeCCCCCCCCCcc
Q 003936 559 NNNLERIPE--RLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 559 ~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+|+++.+++ .+..+++|++|++++|+++..|.
T Consensus 96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~ 129 (162)
T d1a9na_ 96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129 (162)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred cccccccccccccccccccchhhcCCCccccccc
Confidence 777766543 45666777777777777666653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.39 E-value=5.6e-13 Score=126.08 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=81.5
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccc-cc-ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQ-LW-DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~-l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~ 123 (785)
+.++.+++.++++|..-+.++++|+|++|+|+. ++ ..|..+++|+.|+|++|.+....+ .+..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l 90 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence 356677777777776334677777777777763 32 336777777777777777665555 467777777777777776
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
....+..|.++++|++|+|++|...+.-|..+ .+++|++|++++|.
T Consensus 91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence 55556667777777777777754433333334 67777777777764
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.1e-14 Score=143.94 Aligned_cols=177 Identities=18% Similarity=0.282 Sum_probs=107.7
Q ss_pred eEEEEecCCCCccc-cc-ccccCceEEEcCCCCcc--cccccccCCCCCcEEecCCCccccCCC-CCccccccceecccc
Q 003936 46 LRYFEWHQFPLKTL-NI-LHWENLVSLKMPGSKVT--QLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGY 120 (785)
Q Consensus 46 L~~L~l~~~~l~~l-p~-~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~ 120 (785)
+..+.+.+...... .. ....+|++||++++.++ .+...+..+++|++|+|++|.+....+ .+..+++|++|++++
T Consensus 25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence 34444554443322 12 55667888888888775 244446778888888888886543332 466778888888888
Q ss_pred ccCcc--ccccccccCCcccEEecCCCCCCCc--CCCcc--ccccccEEeccCCcCCCCCCCcccccccccccccccccc
Q 003936 121 CSSLT--ETHSSIQYLNKLEVLDLDRCKSLTS--LPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE 194 (785)
Q Consensus 121 n~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~--~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~ 194 (785)
|...+ .+...+..+++|++|++++|..++. ++..+ ..++|+.|++++|... +.. .
T Consensus 105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------i~~---~ 165 (284)
T d2astb2 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN----------------LQK---S 165 (284)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG----------------SCH---H
T ss_pred cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc----------------ccc---c
Confidence 75443 2223345788899999988866543 22222 3467888888876310 000 1
Q ss_pred ccCcchhccccccceeccccc-cccccchhhhcccccccccccCCCCC
Q 003936 195 ELPSSIKCLSNIGELLIYSCK-RLENISSSIFKLQFLESIRIHRCPNL 241 (785)
Q Consensus 195 ~lp~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~L 241 (785)
.+...+.++++|++|++++|. +.......+.++++|++|++++|..+
T Consensus 166 ~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i 213 (284)
T d2astb2 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213 (284)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence 122234557778888887765 33445555666666666666666544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1e-12 Score=119.82 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=66.0
Q ss_pred hhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEcc
Q 003936 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLS 535 (785)
Q Consensus 457 ~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls 535 (785)
.+++|++++|.. ..++..+..+++|+.|++++|.+... +.+..+++|++|++++|.++.+|.. +..+++|+.|+++
T Consensus 19 ~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~ 95 (162)
T d1a9na_ 19 RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 95 (162)
T ss_dssp SCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCcEEECCCCCC-CccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence 355566665543 33344445556666666666655432 2355556666666666666665433 3445666666666
Q ss_pred CCccccccc--cccCCCCCCEEEcccCCCCCCCC----cCcCCCCCCEEe
Q 003936 536 DNNLQIIPE--SLNQLSSLVSLKLSNNNLERIPE----RLDPLSSLKYLD 579 (785)
Q Consensus 536 ~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~ 579 (785)
+|+++.+++ .+..+++|+.|++++|.++..|. .+..+++|++||
T Consensus 96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 666655542 35556666666666666655543 244555666555
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.26 E-value=2.7e-13 Score=141.46 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=142.5
Q ss_pred CCccccCccccceeeccCcccc-----cCCccccCccccceecccCccCCcc----------ccccccCCCCCCEEEeeC
Q 003936 299 LPDELGNLQALNRLIIDGTAIR-----ELPEGLGQLALLSKLELKNCSELEY----------ISSSIFKLKSVESIEISN 363 (785)
Q Consensus 299 lp~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~~ 363 (785)
+...+.+...|+.|+|++|.+. .+...+...++|+.|+++++..... +...+...++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 3344556677777777777664 2333455667777777776543211 122334456677777666
Q ss_pred CCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcc-------------c
Q 003936 364 CSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE-------------L 430 (785)
Q Consensus 364 ~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-------------~ 430 (785)
|.. .. . ....+...+...++|+.|++++|.+...-... .
T Consensus 103 n~i-~~-----------~----------------~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~ 154 (344)
T d2ca6a1 103 NAF-GP-----------T----------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 154 (344)
T ss_dssp CCC-CT-----------T----------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cc-----------c----------------cccchhhhhcccccchheeccccccccccccccccccccccccccc
Confidence 631 00 0 11122233445566777777766542210000 1
Q ss_pred CCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCccc-----CCCccccccc
Q 003936 431 GNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMR-----LPDEIGNLEY 505 (785)
Q Consensus 431 ~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~ 505 (785)
...+.|+.+.+++|.++.-.. ..+...+...+.|+.|++++|.+... +...+...++
T Consensus 155 ~~~~~L~~l~l~~n~i~~~~~------------------~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~ 216 (344)
T d2ca6a1 155 KNAPPLRSIICGRNRLENGSM------------------KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 216 (344)
T ss_dssp HTCCCCCEEECCSSCCTGGGH------------------HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred ccCcccceeeccccccccccc------------------ccccchhhhhhhhcccccccccccccccccchhhhhcchhh
Confidence 123344445555554431100 01111223337888899988887532 3345677888
Q ss_pred cceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccccccC--CCCCCEEEcccCCCCC-----CCCc
Q 003936 506 LKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPESLNQ--LSSLVSLKLSNNNLER-----IPER 568 (785)
Q Consensus 506 L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~--l~~L~~L~L~~n~l~~-----lp~~ 568 (785)
|+.|++++|.++. +...+..+++|++|+|++|.+.. +-..+.. .+.|+.|++++|+++. +...
T Consensus 217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~ 296 (344)
T d2ca6a1 217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296 (344)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence 9999999988763 44567788899999999998874 3334433 4679999999998863 3444
Q ss_pred Cc-CCCCCCEEeCCCCCCCCC
Q 003936 569 LD-PLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 569 l~-~l~~L~~L~l~~n~l~~l 588 (785)
+. ++++|++|++++|++..-
T Consensus 297 l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 297 IDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp HHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCCCEEECCCCcCCCc
Confidence 43 577899999999987543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.17 E-value=2.7e-13 Score=128.40 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=43.9
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCcccccc--ccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIP--ESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L 557 (785)
++|++|++++|.+. .+|.....+++|+.|++++|.++.++. +..+++|+.|++++|+++.++ ..+..+++|+.|++
T Consensus 70 ~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L 147 (198)
T d1m9la_ 70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred ccccChhhcccccc-ccccccccccccccccccccccccccc-ccccccccccccccchhccccccccccCCCccceeec
Confidence 55555555555432 233333334455555665555555532 455556666666666665544 23555666666666
Q ss_pred ccCCCCC
Q 003936 558 SNNNLER 564 (785)
Q Consensus 558 ~~n~l~~ 564 (785)
++|.+..
T Consensus 148 ~~N~l~~ 154 (198)
T d1m9la_ 148 AGNPLYN 154 (198)
T ss_dssp CSSHHHH
T ss_pred CCCcccc
Confidence 6665543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.10 E-value=1e-12 Score=124.39 Aligned_cols=119 Identities=23% Similarity=0.217 Sum_probs=97.1
Q ss_pred CCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCcccc
Q 003936 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477 (785)
Q Consensus 398 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~ 477 (785)
.++.++.++..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++.+|......
T Consensus 36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~--------------------- 92 (198)
T d1m9la_ 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA--------------------- 92 (198)
T ss_dssp TCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHH---------------------
T ss_pred chhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccccccc---------------------
Confidence 345566778889999999999998654 44 4888999999999999999988655554
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCcccccc
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIP 543 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp 543 (785)
++|+.|++++|.+... ..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+...+
T Consensus 93 --~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 156 (198)
T d1m9la_ 93 --DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp --HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred --cccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence 6788888888877643 34778899999999999999876 46889999999999999987643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.06 E-value=1e-11 Score=129.23 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccccceEEecCeeccc-----cCcccC--CCCCCcEEEccCCcccc-----cc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIRE-----VPESLG--QLSSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~--~l~~L~~L~Ls~n~l~~-----lp 543 (785)
++|+.|++++|.+... +...+...++|++|++++|.++. +-..+. ..+.|++|++++|+++. +.
T Consensus 215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~ 294 (344)
T d2ca6a1 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294 (344)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence 4555555555554321 22334455666666666666552 222222 23568888888888763 44
Q ss_pred cccc-CCCCCCEEEcccCCCCC
Q 003936 544 ESLN-QLSSLVSLKLSNNNLER 564 (785)
Q Consensus 544 ~~l~-~l~~L~~L~L~~n~l~~ 564 (785)
..+. +.+.|+.|+|++|++..
T Consensus 295 ~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 295 TVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHccCCCCCEEECCCCcCCC
Confidence 4443 57788889998888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4.4e-10 Score=101.30 Aligned_cols=106 Identities=22% Similarity=0.221 Sum_probs=80.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCe-eccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGT-AIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 556 (785)
...+.++.+++... ..|..+..+++|++|++++| .++.++ ..|.++++|+.|++++|+|+.++ ..|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 33455666655544 34666777888888888765 588885 56888888888888888888875 5588888888888
Q ss_pred cccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 557 LSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 557 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
|++|+|+.+|..+....+|+.|+|++|++.
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccCCCCcccChhhhccccccccccCCCccc
Confidence 888888888777665667888888888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5e-10 Score=100.94 Aligned_cols=85 Identities=31% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCCCCEEEeeCCc-CcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccccccCCCCCCEEE
Q 003936 479 SKSLTSLEIIDCK-NFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLK 556 (785)
Q Consensus 479 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 556 (785)
+++|++|++++++ +....+..|.++++|+.|++++|.++.+ |.+|..+++|++|+|++|+++.+|.......+|+.|+
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~ 109 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE
T ss_pred ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccc
Confidence 3788888887765 4444456788999999999999999998 5678999999999999999999987765566899999
Q ss_pred cccCCCC
Q 003936 557 LSNNNLE 563 (785)
Q Consensus 557 L~~n~l~ 563 (785)
|++|.+.
T Consensus 110 L~~Np~~ 116 (156)
T d2ifga3 110 LSGNPLH 116 (156)
T ss_dssp CCSSCCC
T ss_pred cCCCccc
Confidence 9999885
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1e-07 Score=86.07 Aligned_cols=63 Identities=25% Similarity=0.166 Sum_probs=34.4
Q ss_pred ccccCceEEEcCCCCccccc---ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCc
Q 003936 62 LHWENLVSLKMPGSKVTQLW---DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSL 124 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~ 124 (785)
..+++|++|+|++|+|+.+. ..+..+++|+.|+|++|.+....+ ......+|++|++++|.+.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 34566666666666666542 234556666666666665433221 1223345666666666544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.3e-07 Score=85.29 Aligned_cols=85 Identities=24% Similarity=0.130 Sum_probs=56.0
Q ss_pred cccceEEecCeeccccCcccCCCCCCcEEEccCCcccccc---ccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEe
Q 003936 504 EYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIP---ESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLD 579 (785)
Q Consensus 504 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~ 579 (785)
..+..++..++....++..+..+++|++|+|++|+++.++ ..+..+++|+.|++++|+++++++ .......|+.|+
T Consensus 42 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~ 121 (162)
T d1koha1 42 NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121 (162)
T ss_dssp TCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCC
T ss_pred cchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceee
Confidence 3344444444444444444556788888888888887653 446678888888888888887754 222344688888
Q ss_pred CCCCCCCCC
Q 003936 580 LFENNLDRI 588 (785)
Q Consensus 580 l~~n~l~~l 588 (785)
+++|++...
T Consensus 122 L~~Npl~~~ 130 (162)
T d1koha1 122 LDGNSLSDT 130 (162)
T ss_dssp CTTSTTSSS
T ss_pred cCCCCcCcC
Confidence 888886543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.44 E-value=1.6e-05 Score=71.54 Aligned_cols=104 Identities=20% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCCEEEeeCCc-Ccc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCK-NFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~-~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
++|++|+|++++ +.. .+-..+...+.|+.|+|++|.++. +...+...+.|++|+|++|.+.. +-.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 778888887754 322 122344555667777777776652 22334556677777777777663 334
Q ss_pred cccCCCCCCEEEcccCCCCCC--------CCcCcCCCCCCEEeCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERI--------PERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~l--------p~~l~~l~~L~~L~l~~n 583 (785)
.+...++|++|++++|.+..+ ...+...++|+.|+++.+
T Consensus 95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 566667777777777654432 233444566777776554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.94 E-value=0.00017 Score=64.57 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred ccccccceEEecCe-ecc-----ccCcccCCCCCCcEEEccCCcccc-----ccccccCCCCCCEEEcccCCCCC-----
Q 003936 501 GNLEYLKVLTIKGT-AIR-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESLNQLSSLVSLKLSNNNLER----- 564 (785)
Q Consensus 501 ~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~----- 564 (785)
.+.++|++|+|+++ .++ .+-..+...+.|++|+|++|.+.. +...+...+.|+.|+|++|.++.
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 34588999999974 454 233457778899999999999874 44566778899999999999974
Q ss_pred CCCcCcCCCCCCEEeCCCCCCCCC
Q 003936 565 IPERLDPLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~~n~l~~l 588 (785)
+-..+...++|++|++++|.+..+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~ 115 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVL 115 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCc
Confidence 345677788999999999976654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.58 E-value=0.00023 Score=63.61 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCEEEeeCCc-Ccc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCK-NFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~-~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
++|++|+++++. +.. .+-..+...++|++|++++|.++. +...+...++++.+++++|.+.. +..
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~ 96 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 96 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence 788888888754 322 133345566778888888887652 33445567788888888887753 446
Q ss_pred cccCCCCCCEEEcc--cCCCCC-----CCCcCcCCCCCCEEeCCCCC
Q 003936 545 SLNQLSSLVSLKLS--NNNLER-----IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 545 ~l~~l~~L~~L~L~--~n~l~~-----lp~~l~~l~~L~~L~l~~n~ 584 (785)
.+...++|+.++|+ +|.+.. +.+.+...+.|+.|+++.+.
T Consensus 97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 66777788876664 456642 44455667788888877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.11 E-value=0.0036 Score=55.34 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=64.1
Q ss_pred ccccccceEEecC-eecc-----ccCcccCCCCCCcEEEccCCcccc-----ccccccCCCCCCEEEcccCCCCC-----
Q 003936 501 GNLEYLKVLTIKG-TAIR-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESLNQLSSLVSLKLSNNNLER----- 564 (785)
Q Consensus 501 ~~l~~L~~L~L~~-n~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~----- 564 (785)
.+.+.|++|++++ +.++ .+-..+...++|++|++++|.++. +-..+...++++.+++++|.+..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 4568899999987 4554 234556778899999999998864 44566778899999999998863
Q ss_pred CCCcCcCCCCCCEEeCC--CCCCC
Q 003936 565 IPERLDPLSSLKYLDLF--ENNLD 586 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~--~n~l~ 586 (785)
+...+...++|+.++|+ +|++.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~ 117 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLG 117 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCccccEEeeccCCCcCc
Confidence 44567778889887665 44454
|