Citrus Sinensis ID: 003937
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.998 | 0.662 | 0.0 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.989 | 0.983 | 0.379 | 1e-164 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.913 | 0.965 | 0.403 | 1e-163 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.885 | 0.817 | 0.400 | 1e-159 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.853 | 0.937 | 0.391 | 1e-151 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.890 | 0.895 | 0.361 | 1e-151 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.884 | 0.799 | 0.367 | 1e-149 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.839 | 0.619 | 0.366 | 1e-147 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.836 | 0.812 | 0.373 | 1e-145 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.824 | 0.784 | 0.379 | 1e-144 |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/786 (66%), Positives = 643/786 (81%), Gaps = 1/786 (0%)
Query: 1 METPNPPSLISPLEFYAHLLQSNL-KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA 59
M+ P P SL + LE +LLQ ++ KS F +LVH R+IK GL SV+L N+LMN Y+
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 60 KTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVT 119
KT +A+K+FDEMP++T SWNT+LSAY+K+G +D CE F+ +P RDSVSWTT+IV
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179
Y IG++ AIR+ +MV++ + PTQFT+T+VLAS A + GKKVHSF+VK GL G
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180
Query: 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE 239
V+V+NSLLNMYAK GD MMAK VFD M ++++SSWN +++LH+ G++DLA AQF+QM E
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Query: 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQ 299
RD+VTWNSMI+G++Q GYD AL +F+ ML+DS L PD+FTLAS LSACANLEKL +GKQ
Sbjct: 241 RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300
Query: 300 IHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359
IH++I+ T FD +G V NALIS Y++ GGVE A++++EQ G L + FT LLDGYIK+
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Query: 360 GDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAML 419
GD+ A+ IF SL+DRDVVAWTAM+VGYEQ+G +A+ LFRSMV G +PN+YTL+AML
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420
Query: 420 SVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479
SV+SSLASL HGKQIH SA++SGE S+SVSNALITMY+KAGNI +A R F+LI ++T
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNM 539
VSWTSMI+ALAQHG EEA++LFE ML G++PDHITYVGV +ACTH GLV QG++Y++M
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 540 MKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599
MK+V KI PT SH+A MVDL GRAGLLQEA FIE MP+EPDVV WGSLLSACRVHKN+D
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600
Query: 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQ 659
LGK+AAE+LLL+EP+NSGAYSAL NLYS+CGKWE+AA IRKSMK VKK QGFSW++++
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 660 NKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSE 719
+KVHVFGVED HP+++ IY M KIWDEIK+MG+VPDTASVLHD+EE+VKEQ+LRHHSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 720 KLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLC 779
KLAIAFGLISTP+ TTLRIMKNLRVCNDCH+AIKFI KLV REI+VRD TRFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780
Query: 780 SCRDYW 785
SCRDYW
Sbjct: 781 SCRDYW 786
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/793 (37%), Positives = 479/793 (60%), Gaps = 16/793 (2%)
Query: 4 PNPPSLISPLEFYAHLLQSNLKSRNPFV--GKLVHARIIKCGLHLSVFLKNSLMNFYAKT 61
PNP + + YA L+ L R + + VH II G + N L++ Y K+
Sbjct: 3 PNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKS 62
Query: 62 ESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMP--NRDSVSWTTIIVT 119
++YA+++FDE+ + T++S Y G + LA VF P RD+V + +I
Sbjct: 63 SELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGD-LSAGKKVHSFVVKTGLSG 178
++ +AI +F +M + P FT SVLA + D + H+ +K+G
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182
Query: 179 CVNVTNSLLNMYAKVGDE----MMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQF 234
+V+N+L+++Y+K A+ VFD + K+ SW +++ ++ +G DL
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242
Query: 235 DQMIER-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEK 293
+ M + +V +N+MI+GY G+ EAL M M+ S ++ D+FT S + ACA
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS-SGIELDEFTYPSVIRACATAGL 301
Query: 294 LKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLL 353
L+LGKQ+HAY++R E D + N+L+S Y K G + A+ I E+ + +++++ LL
Sbjct: 302 LQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEK--MPAKDLVSWNALL 358
Query: 354 DGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY 413
GY+ G IG A+ IF ++++++++W M+ G +NG ++ ++LF M REG +P +Y
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418
Query: 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473
S + + L + +G+Q HA L+ G SSLS NALITMY+K G + AR+VF +
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 474 HWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533
++VSW ++I AL QHG G EA+ ++E ML+ GI+PD IT + VLTAC+H GLV+QG
Sbjct: 479 PC-LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 537
Query: 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACR 593
++Y++ M+ V++I P H+A ++DLL R+G +A + IE++P +P W +LLS CR
Sbjct: 538 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCR 597
Query: 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGF 653
VH N++LG IAA+KL + P++ G Y L N++++ G+WE+ A +RK M+ GVKK
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 657
Query: 654 SWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDV-KEQ 712
SW++++ +VH F V+D HP+ +A+Y + + E++ +G+VPDT+ VLHDVE D KE
Sbjct: 658 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKED 717
Query: 713 MLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFH 772
ML HSEK+A+AFGL+ P TT+RI KNLR C DCH+ +F+ +V R+I++RD RFH
Sbjct: 718 MLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFH 777
Query: 773 HFKKGLCSCRDYW 785
HF+ G CSC ++W
Sbjct: 778 HFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1488), Expect = e-163, Method: Compositional matrix adjust.
Identities = 304/754 (40%), Positives = 453/754 (60%), Gaps = 37/754 (4%)
Query: 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQ 92
K++H II+ + FL N++++ YA +S +YA++VFD +P L SWN +L AY+K
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 93 GRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQD-QVLPTQFTVTSV 151
G + F +P+RD V+W +I Y+ G A++ + M++D T+ T+ ++
Sbjct: 86 GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145
Query: 152 LASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV 211
L ++ G +S GK++H V+K G + V + LL MYA VG AK VF G+ +N
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205
Query: 212 SSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKD 271
+N ++ + G ++ A F M E+D V+W +MI G +QNG EA+ F M K
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREM-KV 263
Query: 272 SSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEI 331
LK D++ S L AC L + GKQIHA IIRT F VG+ALI
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI----------- 312
Query: 332 AQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNG 391
D Y K + A+ +FD ++ ++VV+WTAM+VGY Q G
Sbjct: 313 ----------------------DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350
Query: 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSN 451
++AV++F M R G P++YTL +S ++++SL+ G Q H A+ SG ++VSN
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSN 410
Query: 452 ALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIK 511
+L+T+Y K G+I+ + R+FN ++ R + VSWT+M+ A AQ G E IQLF++M++ G+K
Sbjct: 411 SLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469
Query: 512 PDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYN 571
PD +T GV++AC+ GLVE+GQRY+ +M + + I P+ H++ M+DL R+G L+EA
Sbjct: 470 PDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
Query: 572 FIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631
FI MP PD + W +LLSACR NL++GK AAE L+ ++P + Y+ L ++Y+S GK
Sbjct: 530 FINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 589
Query: 632 WEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKE 691
W+ A +R+ M+ VKK G SW++ + K+H F +D P D IY K+ ++ ++I +
Sbjct: 590 WDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIID 649
Query: 692 MGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSA 751
G+ PDT+ V HDVEE VK +ML +HSE+LAIAFGLI P +R+ KNLRVC DCH+A
Sbjct: 650 NGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNA 709
Query: 752 IKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
K I + REI+VRDA RFH FK G CSC D+W
Sbjct: 710 TKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/764 (40%), Positives = 446/764 (58%), Gaps = 69/764 (9%)
Query: 32 GKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAK 91
G+ HA + G +VF+ N+L+ Y++ S+S A+KVFDEM V W
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSV-----W--------- 191
Query: 92 QGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQD-QVLPTQFTVTS 150
D VSW +II +Y ++G+ K A+ MF M + P T+ +
Sbjct: 192 -----------------DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVN 234
Query: 151 VLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKN 210
VL C +LG S GK++H F V + + + V N L++MYAK G A VF M +K+
Sbjct: 235 VLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294
Query: 211 VSSWNVVVSLHIHSGRLDLARAQFDQM----IERDVVTWNSMIAGYSQNGYDFEALGMFA 266
V SWN +V+ + GR + A F++M I+ DVVTW++ I+GY+Q G +EALG+
Sbjct: 295 VVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCR 354
Query: 267 NMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKV 326
ML S +KP++ TL S LS CA++ L GK+IH Y I+ D
Sbjct: 355 QMLS-SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID---------------- 397
Query: 327 GGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSL--RDRDVVAWTAML 384
+ ++G N++ L+D Y K + AR +FDSL ++RDVV WT M+
Sbjct: 398 ---------LRKNGHGDENMV-INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMI 447
Query: 385 VGYEQNGLNKDAVELFRSMVREG--PKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG 442
GY Q+G A+EL M E +PN +T+S L +SLA+L GKQIHA ALR+
Sbjct: 448 GGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ 507
Query: 443 E-ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQL 501
+ A L VSN LI MY+K G+I+ AR VF+ + + E V+WTS++ HG GEEA+ +
Sbjct: 508 QNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTGYGMHGYGEEALGI 566
Query: 502 FERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561
F+ M +G K D +T + VL AC+H G+++QG Y+N MK V + P P H+A +VDLLG
Sbjct: 567 FDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLG 626
Query: 562 RAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621
RAG L A IE MP+EP V W + LS CR+H ++LG+ AAEK+ + ++ G+Y+
Sbjct: 627 RAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTL 686
Query: 622 LCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNK 681
L NLY++ G+W+D IR M++ GVKK G SWV+ F V D HP IY
Sbjct: 687 LSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQV 746
Query: 682 MAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKN 741
+ IK++G+VP+T LHDV+++ K+ +L HSEKLA+A+G+++TP+ +RI KN
Sbjct: 747 LLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKN 806
Query: 742 LRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
LRVC DCH+A ++ +++D +I++RD++RFHHFK G CSC+ YW
Sbjct: 807 LRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 278/710 (39%), Positives = 419/710 (59%), Gaps = 40/710 (5%)
Query: 81 SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQ 140
S + ++S Y L A +F + + ++W ++I + + F A+ FVEM
Sbjct: 41 SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASG 100
Query: 141 VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKV---GDEM 197
P SVL SCT + DL G+ VH F+V+ G+ + N+L+NMYAK+ G ++
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160
Query: 198 MAKAVFDGM--RLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQN 255
VFD M R N +V I +D R F+ M +DVV++N++IAGY+Q+
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220
Query: 256 GYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315
G +AL M M + LKPD FTL+S L + + GK+IH Y+IR D+ +
Sbjct: 221 GMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI 279
Query: 316 GNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR 375
G++L+ YAK +E ++ R+F L R
Sbjct: 280 GSSLVDMYAKSARIEDSE---------------------------------RVFSRLYCR 306
Query: 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIH 435
D ++W +++ GY QNG +A+ LFR MV KP S+++ + LA+L GKQ+H
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366
Query: 436 ASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLG 495
LR G S++ +++AL+ MYSK GNI AAR++F+ ++ E VSWT++I+ A HG G
Sbjct: 367 GYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE-VSWTAIIMGHALHGHG 425
Query: 496 EEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFAS 555
EA+ LFE M G+KP+ + +V VLTAC+H GLV++ Y+N M V+ + H+A+
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 556 MVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615
+ DLLGRAG L+EAYNFI M +EP W +LLS+C VHKNL+L + AEK+ ++ +N
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545
Query: 616 SGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQR 675
GAY +CN+Y+S G+W++ A +R M+ G++K SW++++NK H F D HP
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 605
Query: 676 DAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTT 735
D I + + +++++ G+V DT+ VLHDV+E+ K ++L HSE+LA+AFG+I+T TT
Sbjct: 606 DKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 665
Query: 736 LRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
+R+ KN+R+C DCH AIKFI K+ +REI+VRD +RFHHF +G CSC DYW
Sbjct: 666 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/759 (36%), Positives = 434/759 (57%), Gaps = 60/759 (7%)
Query: 36 HARIIKCGLHLSVFLK---------NSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTIL 86
+ R +C L VF + N +++ Y + A+K+FDEMP + L SWN ++
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 87 SAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQF 146
Y + L A E+F +MP RD SW T++ Y + G +A +F M + +
Sbjct: 134 KGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNA 193
Query: 147 TVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGM 206
+++ + + + + + K+ + + N LL + K + A+ FD M
Sbjct: 194 LLSAYVQN--------SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 207 RLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFA 266
+++V SWN +++ + SG++D AR FD+ +DV TW +M++GY QN EA +F
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 267 NMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKV 326
M P++ ++ NA+++ Y +
Sbjct: 306 KM-------PERNEVS---------------------------------WNAMLAGYVQG 325
Query: 327 GGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVG 386
+E+A+++ + + NV + T++ GY + G I A+ +FD + RD V+W AM+ G
Sbjct: 326 ERMEMAKELFDV--MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 387 YEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS 446
Y Q+G + +A+ LF M REG + N + S+ LS + + +L+ GKQ+H ++ G +
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443
Query: 447 LSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERML 506
V NAL+ MY K G+I A +F + ++ VSW +MI ++HG GE A++ FE M
Sbjct: 444 CFVGNALLLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVALRFFESMK 502
Query: 507 ELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566
G+KPD T V VL+AC+H GLV++G++Y+ M + + P H+A MVDLLGRAGLL
Sbjct: 503 REGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLL 562
Query: 567 QEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626
++A+N ++NMP EPD WG+LL A RVH N +L + AA+K+ +EP+NSG Y L NLY
Sbjct: 563 EDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 627 SSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIW 686
+S G+W D +R M+ GVKK G+SW++IQNK H F V D HP++D I+ + ++
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682
Query: 687 DEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCN 746
+K+ G+V T+ VLHDVEE+ KE+M+R+HSE+LA+A+G++ +R++KNLRVC
Sbjct: 683 LRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCE 742
Query: 747 DCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
DCH+AIK++ ++ R I++RD RFHHFK G CSC DYW
Sbjct: 743 DCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 303/825 (36%), Positives = 447/825 (54%), Gaps = 131/825 (15%)
Query: 28 NPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILS 87
+ G+ +H + IK G V + SL++ Y K + +KVFDEM
Sbjct: 108 DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK------------ 155
Query: 88 AYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFT 147
R+ V+WTT+I Y + +F+ M + P FT
Sbjct: 156 -------------------ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196
Query: 148 VTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207
+ L G G +VH+ VVK GL + V+NSL+N+Y K G+
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGN------------ 244
Query: 208 LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFAN 267
+ AR FD+ + VVTWNSMI+GY+ NG D EALGMF +
Sbjct: 245 -------------------VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285
Query: 268 MLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYI----------IRTE--------- 308
M + + ++ + + AS + CANL++L+ +Q+H + IRT
Sbjct: 286 M-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344
Query: 309 --------FDATGPVGN-----ALISCYAKVGGVEIA--------QKIVEQSGISY---- 343
F G VGN A+IS + + G E A +K V + +Y
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404
Query: 344 --LNVIA-------------------FTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA 382
L VI+ T LLD Y+K+G + A ++F + D+D+VAW+A
Sbjct: 405 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSA 464
Query: 383 MLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSL-ASLDHGKQIHASALRS 441
ML GY Q G + A+++F + + G KPN +T S++L+V ++ AS+ GKQ H A++S
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 524
Query: 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQL 501
SSL VS+AL+TMY+K GNI +A VF ++ VSW SMI AQHG +A+ +
Sbjct: 525 RLDSSLCVSSALLTMYAKKGNIESAEEVFKR-QREKDLVSWNSMISGYAQHGQAMKALDV 583
Query: 502 FERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561
F+ M + +K D +T++GV ACTH GLVE+G++Y+++M KI PT H + MVDL
Sbjct: 584 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643
Query: 562 RAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621
RAG L++A IENMP W ++L+ACRVHK +LG++AAEK++ ++P++S AY
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 703
Query: 622 LCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNK 681
L N+Y+ G W++ A +RK M VKK G+SW++++NK + F D HP +D IY K
Sbjct: 704 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMK 763
Query: 682 MAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKN 741
+ + +K++G+ PDT+ VL D++++ KE +L HSE+LAIAFGLI+TP+ + L I+KN
Sbjct: 764 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKN 823
Query: 742 LRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKK-GLCSCRDYW 785
LRVC DCH IK I K+ +REIVVRD+ RFHHF G+CSC D+W
Sbjct: 824 LRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/756 (36%), Positives = 428/756 (56%), Gaps = 97/756 (12%)
Query: 30 FVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAY 89
F G+ +HA K G + ++ +L+N YAK I A F E V+ + WN +L AY
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVT 149
G LD +N+ R+F +M ++++P Q+T
Sbjct: 466 ---GLLD----------------------------DLRNSFRIFRQMQIEEIVPNQYTYP 494
Query: 150 SVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK 209
S+L +C LGDL G+++HS ++KT V + L++MYAK+G K
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG--------------K 540
Query: 210 NVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269
++W++++ + +DVV+W +MIAGY+Q +D +AL F ML
Sbjct: 541 LDTAWDILI-----------------RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 270 KDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV 329
D ++ D+ L + +SACA L+ LK G+QIHA + F + P NAL++ Y++ G +
Sbjct: 584 -DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 330 EIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQ 389
E SYL F+ D +AW A++ G++Q
Sbjct: 643 EE----------SYL-----------------------AFEQTEAGDNIAWNALVSGFQQ 669
Query: 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSV 449
+G N++A+ +F M REG NN+T + + +S A++ GKQ+HA ++G S V
Sbjct: 670 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 729
Query: 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELG 509
NALI+MY+K G+I+ A + F + + E VSW ++I A ++HG G EA+ F++M+
Sbjct: 730 CNALISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINAYSKHGFGSEALDSFDQMIHSN 788
Query: 510 IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEA 569
++P+H+T VGVL+AC+H GLV++G Y+ M + + + P P H+ +VD+L RAGLL A
Sbjct: 789 VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRA 848
Query: 570 YNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC 629
FI+ MP++PD + W +LLSAC VHKN+++G+ AA LL +EP++S Y L NLY+
Sbjct: 849 KEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVS 908
Query: 630 GKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEI 689
KW+ R+ MK GVKK G SW++++N +H F V D HP D I+ +
Sbjct: 909 KKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRA 968
Query: 690 KEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCH 749
E+G+V D S+L++++ + K+ ++ HSEKLAI+FGL+S P + +MKNLRVCNDCH
Sbjct: 969 SEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCH 1028
Query: 750 SAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
+ IKF+ K+ +REI+VRDA RFHHF+ G CSC+DYW
Sbjct: 1029 AWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/755 (37%), Positives = 411/755 (54%), Gaps = 98/755 (12%)
Query: 31 VGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYA 90
VGK +H ++K G L +F L N YAK ++ A+KVFD
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR----------------- 195
Query: 91 KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTS 150
MP RD VSW TI+ Y++ G + A+ M M ++ + P+ T+ S
Sbjct: 196 --------------MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241
Query: 151 VLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKN 210
VL + +AL +S GK++H + +++G VN++ +L++MYAK G
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS--------------- 286
Query: 211 VSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLK 270
L+ AR FD M+ER+VV+WNSMI Y QN EA+ +F ML
Sbjct: 287 ----------------LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML- 329
Query: 271 DSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVE 330
D +KP ++ L ACA+L L+ G+ IH + D V N+LIS Y K
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK--- 386
Query: 331 IAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQN 390
++ A +F L+ R +V+W AM++G+ QN
Sbjct: 387 ------------------------------EVDTAASMFGKLQSRTLVSWNAMILGFAQN 416
Query: 391 GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVS 450
G DA+ F M KP+ +T ++++ + L+ H K IH +RS ++ V+
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT 476
Query: 451 NALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGI 510
AL+ MY+K G I AR +F+++ R T +W +MI HG G+ A++LFE M + I
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVT-TWNAMIDGYGTHGFGKAALELFEEMQKGTI 535
Query: 511 KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAY 570
KP+ +T++ V++AC+H GLVE G + + MMK + I+ + H+ +MVDLLGRAG L EA+
Sbjct: 536 KPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595
Query: 571 NFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630
+FI MP++P V +G++L AC++HKN++ + AAE+L + PD+ G + L N+Y +
Sbjct: 596 DFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAAS 655
Query: 631 KWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690
WE +R SM G++KT G S V+I+N+VH F HP IY + K+ IK
Sbjct: 656 MWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
Query: 691 EMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHS 750
E G+VPDT VL VE DVKEQ+L HSEKLAI+FGL++T TT+ + KNLRVC DCH+
Sbjct: 716 EAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHN 774
Query: 751 AIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
A K+I + REIVVRD RFHHFK G CSC DYW
Sbjct: 775 ATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/716 (37%), Positives = 404/716 (56%), Gaps = 69/716 (9%)
Query: 71 FDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130
FD P T+ N +L +Y + RLDLAC +F +P +DSV++ T+I Y + G + +I
Sbjct: 178 FDTNPFLTVS--NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESI 235
Query: 131 RMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMY 190
+F++M Q P+ FT + VL + L D + G+++H+ V TG S +V N +L+ Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 191 AKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIA 250
+K R+ R FD+M E D V++N +I+
Sbjct: 296 SK-------------------------------HDRVLETRMLFDEMPELDFVSYNVVIS 324
Query: 251 GYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFD 310
YSQ +EA F ++ F A+ LS ANL L++G+Q+H + D
Sbjct: 325 SYSQAD-QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD 383
Query: 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFD 370
+ VGN+L+ YAK E A+ IF
Sbjct: 384 SILHVGNSLVDMYAKCEMFEEAE---------------------------------LIFK 410
Query: 371 SLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDH 430
SL R V+WTA++ GY Q GL+ ++LF M + + T + +L S+S ASL
Sbjct: 411 SLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLL 470
Query: 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALA 490
GKQ+HA +RSG ++ + L+ MY+K G+I A +VF + R VSW ++I A A
Sbjct: 471 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRN-AVSWNALISAHA 529
Query: 491 QHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550
+G GE AI F +M+E G++PD ++ +GVLTAC+H G VEQG Y+ M ++ I P
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589
Query: 551 SHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610
H+A M+DLLGR G EA ++ MP EPD + W S+L+ACR+HKN L + AAEKL
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649
Query: 611 IEP-DNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVED 669
+E ++ AY ++ N+Y++ G+WE +++K+M+ G+KK +SWV++ +K+HVF D
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709
Query: 670 WLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLIS 729
HP D I K+ ++ EI+ G+ PDT+SV+ DV+E +K + L++HSE+LA+AF LIS
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769
Query: 730 TPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
TPE + +MKNLR C DCH+AIK I K+V REI VRD +RFHHF +G+CSC DYW
Sbjct: 770 TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | ||||||
| 359480846 | 785 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.742 | 0.0 | |
| 224096249 | 747 | predicted protein [Populus trichocarpa] | 0.848 | 0.891 | 0.729 | 0.0 | |
| 356502620 | 785 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.993 | 0.687 | 0.0 | |
| 449487256 | 782 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 1.0 | 0.662 | 0.0 | |
| 449449306 | 782 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 1.0 | 0.662 | 0.0 | |
| 297821407 | 786 | pentatricopeptide repeat-containing prot | 1.0 | 0.998 | 0.666 | 0.0 | |
| 15227144 | 786 | pentatricopeptide repeat-containing prot | 1.0 | 0.998 | 0.662 | 0.0 | |
| 357113684 | 802 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.958 | 0.588 | 0.0 | |
| 115455659 | 804 | Os03g0775400 [Oryza sativa Japonica Grou | 0.983 | 0.960 | 0.582 | 0.0 | |
| 242032827 | 803 | hypothetical protein SORBIDRAFT_01g00656 | 0.983 | 0.961 | 0.580 | 0.0 |
| >gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/785 (74%), Positives = 677/785 (86%)
Query: 1 METPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAK 60
MET + L SP + Y LQ +LK ++PF GK +HARIIK GLHL VFL N+LMNFYAK
Sbjct: 1 METSSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAK 60
Query: 61 TESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTY 120
T I A +VFDEMPVK++ SWN ILS YAK GRL+ A VF MP DSVSWT +IV Y
Sbjct: 61 TGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGY 120
Query: 121 NEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCV 180
N++G+F+NAI MF EMV D V PTQFT+T+VLASC A+ L G+KVHSFVVK GLS +
Sbjct: 121 NQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYI 180
Query: 181 NVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER 240
+V NSLLNMYAK GD + AK VFD M+LK+ SSWN ++S H+ SG +DLA+ QF+QMIER
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIER 240
Query: 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQI 300
DVV+WN+MI+GY+Q+G+D EAL +F+ ML DSS KPDKFTLAS LSACANLE LKLGKQI
Sbjct: 241 DVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQI 300
Query: 301 HAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIG 360
HA+IIRTEFD G VGNALIS Y+K GGVEIAQKI+EQS IS L+VIAFT LLDGY+K+G
Sbjct: 301 HAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLG 360
Query: 361 DIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS 420
DI PARRIFDSLR RDVVAWTAM+VGY QNG N+DA+ELFRSM++EGPKPNNYTL+ MLS
Sbjct: 361 DINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLS 420
Query: 421 VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETV 480
VSSSLASLDHG+QIHASA RSG ASS+SVSNALITMY+K+G+IN AR VFNLIHW+++T+
Sbjct: 421 VSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTI 480
Query: 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540
+WTSMI+ALAQHGLGEEA+ LFERMLE GIKPDHITYVGVL+ACTH GLVEQG+ YYN+M
Sbjct: 481 TWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLM 540
Query: 541 KNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDL 600
+N HKI PTPSH+A M+DL GRAGLLQEA+ FIENMP+EPDV+AWGSLL++C+VHKN++L
Sbjct: 541 QNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVEL 600
Query: 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQN 660
++AAE+LLLIEP+NSGAYSAL N+YS+CG+WE+AANIRKSMK GVKK QGFSWVQI+N
Sbjct: 601 AEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKN 660
Query: 661 KVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEK 720
KVH+FGV+D LHPQRDAIY MAKIW EIK+MGFVPDT SVLHD+EE++KEQ+L HHSEK
Sbjct: 661 KVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEK 720
Query: 721 LAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCS 780
LAIAFGLI TPENTTLRIMKNLRVCNDCHSAIKFI KLV REI+VRDATRFHHFK GLCS
Sbjct: 721 LAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCS 780
Query: 781 CRDYW 785
CRDYW
Sbjct: 781 CRDYW 785
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/747 (72%), Positives = 649/747 (86%)
Query: 39 IIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLA 98
++K GL SV+L N+LMN YAKT A +F+EMPVKT SWNTILS YAKQG+L+ A
Sbjct: 1 MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60
Query: 99 CEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTAL 158
+VF+L+P RDSVSWTTIIV YN++GRF++AI++FV+MV+D+VLPTQFT+T+VLASC A
Sbjct: 61 HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120
Query: 159 GDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVV 218
G GKKVHSFVVK GL CV V NSLLNMYAK GD MAK VFD M+L+N SSWN ++
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180
Query: 219 SLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK 278
SLH++ GR+DLA AQF+ + ERD+V+WNSMIAG +Q+G+D EAL F+++LKD+SLKPD+
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240
Query: 279 FTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQ 338
F+LAS LSACANLEKL GKQIH YI+RT FDA+G VGNALIS YAK GGVEIA++I+EQ
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300
Query: 339 SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVE 398
SGIS L+VIAFT LL+GY+K+GDI PAR+IF+SL+D DVVAWTAM+VGY QNGLN DA+E
Sbjct: 301 SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIE 360
Query: 399 LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS 458
+F++MV EGP+PN++TL+AMLS SSS+ SL+HGKQIHASA+RSGEA S SV NAL TMY+
Sbjct: 361 VFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYA 420
Query: 459 KAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYV 518
KAG+IN AR+VFNL+ ++TVSWTSMI+ALAQHGLGEEAI+LFE+ML LGIKPDHITYV
Sbjct: 421 KAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYV 480
Query: 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPL 578
GVL+ACTHGGLVEQG+ Y+++MKNVHKI PT SH+A MVDL GRAGLLQEAY F+ENMP+
Sbjct: 481 GVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPM 540
Query: 579 EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638
EPDV+AWGSLLS+C+V+KN+DL K+AAE+LLLIEP+NSGAYSAL N+YSSCGKW+DAA I
Sbjct: 541 EPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKI 600
Query: 639 RKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDT 698
RK MK GVKK QG SWVQIQNK HVFGVED LHPQ+D IY M KIW EIK+MGF PDT
Sbjct: 601 RKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDT 660
Query: 699 ASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKL 758
SVLHD+E +VK+Q+LR+HSEKLAIAFG+ISTPENTTLRIMKNLRVCNDCH+AIKFI KL
Sbjct: 661 ESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKL 720
Query: 759 VDREIVVRDATRFHHFKKGLCSCRDYW 785
VDREI+VRDATRFHHFK G CSC+DYW
Sbjct: 721 VDREIIVRDATRFHHFKDGSCSCKDYW 747
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/784 (68%), Positives = 640/784 (81%), Gaps = 4/784 (0%)
Query: 3 TPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGL-HLSVFLKNSLMNFYAKT 61
TPNPPS + HLLQS +KSR+PF+G+ +HARIIK GL +L VFL N+L+N Y KT
Sbjct: 5 TPNPPS---HSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKT 61
Query: 62 ESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYN 121
S S A ++FDEMP+KT SWNTILSA+AK G LD A VF+ +P DSVSWTT+IV YN
Sbjct: 62 GSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYN 121
Query: 122 EIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVN 181
+G FK+A+ F+ MV + PTQFT T+VLASC A L GKKVHSFVVK G SG V
Sbjct: 122 HLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVP 181
Query: 182 VTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERD 241
V NSLLNMYAK GD +MAK VFD MRLK+ S+WN ++S+H+ + DLA A FDQM + D
Sbjct: 182 VANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPD 241
Query: 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301
+V+WNS+I GY GYD AL F+ MLK SSLKPDKFTL S LSACAN E LKLGKQIH
Sbjct: 242 IVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIH 301
Query: 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGD 361
A+I+R + D G VGNALIS YAK G VE+A +IVE +G LNVIAFT+LLDGY KIGD
Sbjct: 302 AHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGD 361
Query: 362 IGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421
I PAR IFDSL+ RDVVAWTAM+VGY QNGL DA+ LFR M+REGPKPNNYTL+A+LSV
Sbjct: 362 IDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSV 421
Query: 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVS 481
SSLASLDHGKQ+HA A+R E SS+SV NALITMYS++G+I AR++FN I ++T++
Sbjct: 422 ISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLT 481
Query: 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541
WTSMI++LAQHGLG EAI+LFE+ML + +KPDHITYVGVL+ACTH GLVEQG+ Y+N+MK
Sbjct: 482 WTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMK 541
Query: 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLG 601
NVH I+PT SH+A M+DLLGRAGLL+EAYNFI NMP+EPDVVAWGSLLS+CRVHK +DL
Sbjct: 542 NVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLA 601
Query: 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNK 661
K+AAEKLLLI+P+NSGAY AL N S+CGKWEDAA +RKSMK VKK QGFSWVQI+NK
Sbjct: 602 KVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNK 661
Query: 662 VHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKL 721
VH+FGVED LHPQRDAIY ++KIW EIK+MGF+PDT SVLHD+E++VKEQ+LRHHSEKL
Sbjct: 662 VHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKL 721
Query: 722 AIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSC 781
AIAF LI+TP++TT+RIMKNLRVCNDCHSAI++I LV+REI+VRDATRFHHFK G CSC
Sbjct: 722 AIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSC 781
Query: 782 RDYW 785
+DYW
Sbjct: 782 QDYW 785
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/785 (66%), Positives = 650/785 (82%), Gaps = 3/785 (0%)
Query: 1 METPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAK 60
ME N P+ EF+AH+LQ++++ ++PF G+ VH +IIK GLHL V+L N+LM FYAK
Sbjct: 1 MEVGNSPT---SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAK 57
Query: 61 TESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTY 120
T S+ +A VFDEMP+K+ SWNT++S YAKQG +++ + MP+ D VSWT IIV Y
Sbjct: 58 TGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY 117
Query: 121 NEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCV 180
N+ G F NAI MF +M+ ++V P+QFTV++VL+SC A L G+K+HSFVVK GL CV
Sbjct: 118 NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCV 177
Query: 181 NVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER 240
V SLLNMYAK GD ++AK VFD M +KN+S+WN ++SL++ SG+ +LA +QF++M +R
Sbjct: 178 PVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR 237
Query: 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQI 300
D+V+WNSMI+GYSQ GY+ EAL +F+ ML + SLKPD FTLAS LSACANLEKL +GKQI
Sbjct: 238 DIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI 297
Query: 301 HAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIG 360
HAYI+R E + +G VGNALIS YAK GGVEIA+ IVE + S LN+IAFT+LLDGY K+G
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLG 357
Query: 361 DIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS 420
++ PAR IF+ LRDRDVVAWTAM+VGY QNGL DA+ELFR MV EGP+PN+YTL+AMLS
Sbjct: 358 NVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417
Query: 421 VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETV 480
VSSSL L+HGKQIHASA+++GE+S+ SV+NALI MY+K GNIN A+RVF+L + ++E V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477
Query: 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540
SWTSMI+ALAQHGLG+EAI LFERML +G+KPDHITYVGVL+ACTH GLVEQG++YYNMM
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537
Query: 541 KNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDL 600
VH+I+PT SH+A M+DL GRAGLLQEAY FIE+MP+EPD +AWGSLL++C++HKN DL
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADL 597
Query: 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQN 660
K+AAE+LLLI+P NSGAY AL N+YS+CGKWE+AA RK MK GV+K +G SW+ I+N
Sbjct: 598 AKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKN 657
Query: 661 KVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEK 720
+VH FGVED +HPQ+D IY MA+IW+EIK+MGF+PDT SVLHD+EE+VKEQ+L++HSEK
Sbjct: 658 EVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEK 717
Query: 721 LAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCS 780
LAIAFGL++TPENT LRIMKNLRVCNDCHSAIKFI KLV REI+VRDATRFHHFK G CS
Sbjct: 718 LAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCS 777
Query: 781 CRDYW 785
CRDYW
Sbjct: 778 CRDYW 782
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/785 (66%), Positives = 650/785 (82%), Gaps = 3/785 (0%)
Query: 1 METPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAK 60
ME N P+ EF+AH+LQ++++ ++PF G+ VH +IIK GLHL V+L N+LM FYAK
Sbjct: 1 MEVGNSPT---SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAK 57
Query: 61 TESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTY 120
T S+ +A VFDEMP+K+ SWNT++S YAKQG +++ + MP+ D VSWT IIV Y
Sbjct: 58 TGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY 117
Query: 121 NEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCV 180
N+ G F NAI MF +M+ ++V P+QFTV++VL+SC A L G+K+HSFVVK GL CV
Sbjct: 118 NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCV 177
Query: 181 NVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER 240
V SLLNMYAK GD ++AK VFD M +KN+S+WN ++SL++ SG+ +LA +QF++M +R
Sbjct: 178 PVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR 237
Query: 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQI 300
D+V+WNSMI+GYSQ GY+ EAL +F+ ML + SLKPD FTLAS LSACANLEKL +GKQI
Sbjct: 238 DIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI 297
Query: 301 HAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIG 360
HAYI+R E + +G VGNALIS YAK GGVEIA+ IVE + S LN+IAFT+LLDGY K+G
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLG 357
Query: 361 DIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS 420
++ PAR IF+ LRDRDVVAWTAM+VGY QNGL DA+ELFR MV EGP+PN+YTL+AMLS
Sbjct: 358 NVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417
Query: 421 VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETV 480
VSSSL L+HGKQIHASA+++GE+S+ SV+NALI MY+K GNIN A+RVF+L + ++E V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477
Query: 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540
SWTSMI+ALAQHGLG+EAI LFERML +G+KPDHITYVGVL+ACTH GLVEQG++YYNMM
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537
Query: 541 KNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDL 600
VH+I+PT SH+A M+DL GRAGLLQEAY FIE+MP+EPD +AWGSLL++C++HKN DL
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADL 597
Query: 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQN 660
K+AAE+LLLI+P NSGAY AL N+YS+CGKWE+AA RK MK GV+K +G SW+ I+N
Sbjct: 598 AKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKN 657
Query: 661 KVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEK 720
+VH FGVED +HPQ+D IY MA+IW+EIK+MGF+PDT SVLHD+EE+VKEQ+L++HSEK
Sbjct: 658 EVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEK 717
Query: 721 LAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCS 780
LAIAFGL++TPENT LRIMKNLRVCNDCHSAIKFI KLV REI+VRDATRFHHFK G CS
Sbjct: 718 LAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCS 777
Query: 781 CRDYW 785
CRDYW
Sbjct: 778 CRDYW 782
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/786 (66%), Positives = 646/786 (82%), Gaps = 1/786 (0%)
Query: 1 METPNPPSLISPLEFYAHLLQSNL-KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA 59
M+ P P SL + LE +LLQ ++ KS F +LVH R+IK GL SV+L N+LMN Y+
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYS 60
Query: 60 KTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVT 119
KT +A+K+FDEMP++T SWNT+LSAYAK+G +D +CE F+ +P RDSVSWTT+IV
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVG 120
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179
Y IG++ AIR+ EM+++ + P+QFT+T+VLAS A L GKKVHSF+VK GL G
Sbjct: 121 YKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGN 180
Query: 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE 239
V+V+NSLLNMYAK GD MMAK VFD M +K++SSWN +++LH+ G++DLA AQF+QM E
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Query: 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQ 299
RD+VTWNSMI+GY+Q GYD AL MF+ ML+DS L PD+FTLAS LSACANLEKL +G+Q
Sbjct: 241 RDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQ 300
Query: 300 IHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359
IH++I+ T FD +G V NALIS Y++ GGVE A++++EQ G L + FT LLDGYIK+
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Query: 360 GDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAML 419
GD+ A+ IFDSL+DRDVVAWTAM+VGYEQ+GL +A+ LFRSMV E +PN+YTL+AML
Sbjct: 361 GDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAML 420
Query: 420 SVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479
SV+SSLASL HGKQIH SA++SGE S+SVSNALITMY+KAG+I +A R F+LI ++T
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNM 539
VSWTSMI+ALAQHG EEA++LFE ML G++PDHITYVGV +ACTH GLV QG++Y++M
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 540 MKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599
MK+V KI PT SH+A MVDL GRAGLLQEA FIE MP+EPDVV WGSLLSACRV+KN+D
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNID 600
Query: 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQ 659
LGK+AAE+LLL+EP+NSGAYSAL NLYS+CGKWE+AA IRKSMK VKK QGFSW++++
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 660 NKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSE 719
+KVH FGVED +HPQ++ IY M KIWDEIK+MG+VPDTASVLHD+EE+VKEQ+LRHHSE
Sbjct: 661 HKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 720 KLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLC 779
KLAIAFGLISTP+ TTLRIMKNLRVCNDCH+AIKFI KLV REI+VRD TRFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780
Query: 780 SCRDYW 785
SCRDYW
Sbjct: 781 SCRDYW 786
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/786 (66%), Positives = 643/786 (81%), Gaps = 1/786 (0%)
Query: 1 METPNPPSLISPLEFYAHLLQSNL-KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA 59
M+ P P SL + LE +LLQ ++ KS F +LVH R+IK GL SV+L N+LMN Y+
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 60 KTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVT 119
KT +A+K+FDEMP++T SWNT+LSAY+K+G +D CE F+ +P RDSVSWTT+IV
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179
Y IG++ AIR+ +MV++ + PTQFT+T+VLAS A + GKKVHSF+VK GL G
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180
Query: 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE 239
V+V+NSLLNMYAK GD MMAK VFD M ++++SSWN +++LH+ G++DLA AQF+QM E
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Query: 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQ 299
RD+VTWNSMI+G++Q GYD AL +F+ ML+DS L PD+FTLAS LSACANLEKL +GKQ
Sbjct: 241 RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300
Query: 300 IHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359
IH++I+ T FD +G V NALIS Y++ GGVE A++++EQ G L + FT LLDGYIK+
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Query: 360 GDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAML 419
GD+ A+ IF SL+DRDVVAWTAM+VGYEQ+G +A+ LFRSMV G +PN+YTL+AML
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420
Query: 420 SVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479
SV+SSLASL HGKQIH SA++SGE S+SVSNALITMY+KAGNI +A R F+LI ++T
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNM 539
VSWTSMI+ALAQHG EEA++LFE ML G++PDHITYVGV +ACTH GLV QG++Y++M
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 540 MKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599
MK+V KI PT SH+A MVDL GRAGLLQEA FIE MP+EPDVV WGSLLSACRVHKN+D
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600
Query: 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQ 659
LGK+AAE+LLL+EP+NSGAYSAL NLYS+CGKWE+AA IRKSMK VKK QGFSW++++
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 660 NKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSE 719
+KVHVFGVED HP+++ IY M KIWDEIK+MG+VPDTASVLHD+EE+VKEQ+LRHHSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 720 KLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLC 779
KLAIAFGLISTP+ TTLRIMKNLRVCNDCH+AIKFI KLV REI+VRD TRFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780
Query: 780 SCRDYW 785
SCRDYW
Sbjct: 781 SCRDYW 786
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/776 (58%), Positives = 595/776 (76%), Gaps = 7/776 (0%)
Query: 17 AHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTES-----ISYAKKVF 71
A LLQ + NP G+ +HAR +K GL S +L N+L+++YA + A+++F
Sbjct: 27 ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86
Query: 72 DEMPV--KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNA 129
DE+P + + +WN++LS YAK GRL A VF MP RD VSWT ++V N +GRF A
Sbjct: 87 DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146
Query: 130 IRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNM 189
I+MF++MV D + PTQFT+T+VL+SC A G+KVHSFVVK GLS CV V NS+LNM
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206
Query: 190 YAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMI 249
Y K GD A+AVF+ M ++VSSWN +VSL H GR+DLA + F+ M +R +V+WN++I
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266
Query: 250 AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEF 309
AGY+QNG + +AL F+ ML S++ PD+FT+ S LSACANL + +GKQ+HAYI+R+
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRM 326
Query: 310 DATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIF 369
G V NALIS YAK G VE A+ +++Q+ ++ LNVI+FT LL+GY+K+GD+ AR +F
Sbjct: 327 PYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMF 386
Query: 370 DSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLD 429
D + +RDVVAWTAM+VGYEQNG N +A+ELFR M+R GP+PN+YT++A+LSV +SLA L+
Sbjct: 387 DVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLE 446
Query: 430 HGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVAL 489
+GKQIH A+RS + S SVSN+++TMY+++G++ ARRVF+ +HWR+ETV+WTSMIVAL
Sbjct: 447 YGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVAL 506
Query: 490 AQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT 549
AQHGLGE+A+ LFE ML +G+KPD IT+VGVL+ACTH G V++G+RY+ +++ H I P
Sbjct: 507 AQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPE 566
Query: 550 PSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLL 609
SH+A MVDLL RAGL EA FI+ MP+EPD +AWGSLLSACRVHKN DL ++AAEKLL
Sbjct: 567 MSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLL 626
Query: 610 LIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVED 669
I+P NSGAYSAL N+YS+CG+W DAA I K K VKK GFSW I N+VHVFG +D
Sbjct: 627 SIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADD 686
Query: 670 WLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLIS 729
LHPQRD +Y AK+WD+IK+ GFVPD SVLHDV++++KE+ML HSEKLAIAFGL+S
Sbjct: 687 VLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVS 746
Query: 730 TPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
TPE TTLRIMKNLRVCNDCH+AIKFI K+ DREI++RDATRFHHFK G CSC+DYW
Sbjct: 747 TPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group] gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group] gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group] gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/778 (58%), Positives = 594/778 (76%), Gaps = 6/778 (0%)
Query: 14 EFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTES----ISYAKK 69
+ YA LLQ + NP G+ +HAR +K GL S +L N+L+++Y +T + A++
Sbjct: 27 DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARR 86
Query: 70 VFDEMPV--KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFK 127
+FDE+P+ + + +WN++LS +AK GRL A VF MP RD+VSWT ++V N GRF
Sbjct: 87 LFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFG 146
Query: 128 NAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLL 187
AI+ ++M D PTQFT+T+VL+SC + G+KVHSFVVK GL CV V NS+L
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 206
Query: 188 NMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS 247
NMY K GD A VF+ M +++VSSWN +VSL+ H GR+DLA + F+ M +R +V+WN+
Sbjct: 207 NMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNA 266
Query: 248 MIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRT 307
MIAGY+QNG D +AL +F+ ML +SS+ PD+FT+ S LSACANL +++GKQ+HAYI+RT
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326
Query: 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARR 367
E V NALIS YAK G VE A++I++QS + LNVI+FT LL+GY+KIGD+ AR
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386
Query: 368 IFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427
+F + +RDVVAWTAM+VGYEQNG N +A++LFRSM+ GP+PN+YTL+A+LSV +SLA
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446
Query: 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV 487
LD+GKQIH A+RS S SVSNA+ITMY+++G+ ARR+F+ + WR+ET++WTSMIV
Sbjct: 447 LDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506
Query: 488 ALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK 547
ALAQHG GEEA+ LFE ML G++PD ITYVGVL+AC+H G V +G+RYY+ +KN H+I
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 566
Query: 548 PTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEK 607
P SH+A MVDLL RAGL EA FI MP+EPD +AWGSLLSACRVHKN +L ++AAEK
Sbjct: 567 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 626
Query: 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGV 667
LL I+P+NSGAYSA+ N+YS+CG+W DAA I K+ K V+K GFSW I++K+HVFG
Sbjct: 627 LLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGA 686
Query: 668 EDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGL 727
+D +HPQRDA+Y A++W+EIK GFVPD SVLHDV++++KE++L HSEKLAIAFGL
Sbjct: 687 DDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGL 746
Query: 728 ISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
ISTPE TTLR+MKNLRVCNDCH+AIK I K+ DREI+VRDATRFHHF+ GLCSC+DYW
Sbjct: 747 ISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor] gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/778 (58%), Positives = 598/778 (76%), Gaps = 6/778 (0%)
Query: 14 EFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTE----SISYAKK 69
+ +A LLQ + + NP G+ +HA +K GL +S +L N+L+++YA+ A++
Sbjct: 26 DHFARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARR 85
Query: 70 VFDEMPV--KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFK 127
+FD++P + +WN++LS YAK GRL A VF MP RD+VSWT ++V N GRF
Sbjct: 86 LFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFW 145
Query: 128 NAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLL 187
+A++ F++MV + + P+QF +T+VL+SC A G+KVHSFV+K GLS CV V NS+L
Sbjct: 146 DAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVL 205
Query: 188 NMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS 247
MY K GD A+AVF+ M++++ SSWN +VSL+ H GR+DLA + F+ M ER +V+WN+
Sbjct: 206 YMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNA 265
Query: 248 MIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRT 307
+IAGY+QNG D AL F+ ML SS++PD+FT+ S LSACANL LK+GKQ+H+YI+RT
Sbjct: 266 IIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRT 325
Query: 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARR 367
+ + NALIS YAK G VE A++I++++ ++ LNVI+FT LL+GY+K+GD AR
Sbjct: 326 GMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQARE 385
Query: 368 IFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427
+FD + +RDV+AWTAM+VGYEQNG N +A+ELFRSM+R GP+PN++TL+A+LS +SLA
Sbjct: 386 VFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAY 445
Query: 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV 487
L +GKQIH A+RS + S+SVSNA+IT+Y+++G++ ARRVF+ I WR+ETV+WTSMIV
Sbjct: 446 LGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIV 505
Query: 488 ALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK 547
ALAQHGLGE+AI LFE ML +G+KPD +TY+GV +ACTH G +++G+RYY M N H I
Sbjct: 506 ALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIV 565
Query: 548 PTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEK 607
P SH+A MVDLL RAGLL EA+ FI+ MP+ PD V WGSLL+ACRV KN DL ++AAEK
Sbjct: 566 PEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEK 625
Query: 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGV 667
LL I+PDNSGAYSAL N+YS+CG+W DAA I K K VKK GFSW +Q+KVHVFG
Sbjct: 626 LLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGA 685
Query: 668 EDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGL 727
+D LHPQRDAI K A++W+EIK+ GFVPD SVLHDV++++KE++L HSEKLAIAFGL
Sbjct: 686 DDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGL 745
Query: 728 ISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
ISTPE TTLRIMKNLRVCNDCH+AIKFI K+VDREI+VRDATRFHHF+ G CSC+DYW
Sbjct: 746 ISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 785 | ||||||
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 1.0 | 0.998 | 0.647 | 2.1e-281 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.989 | 0.983 | 0.377 | 6.2e-149 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.568 | 0.450 | 0.439 | 1.1e-131 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.750 | 0.692 | 0.394 | 5.4e-130 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.880 | 0.884 | 0.368 | 2.3e-126 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.751 | 0.846 | 0.382 | 5.7e-124 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.887 | 0.917 | 0.355 | 6.3e-124 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.552 | 0.487 | 0.429 | 8.2e-123 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.717 | 0.871 | 0.401 | 1.1e-122 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.588 | 0.583 | 0.424 | 2.5e-122 |
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2704 (956.9 bits), Expect = 2.1e-281, P = 2.1e-281
Identities = 509/786 (64%), Positives = 629/786 (80%)
Query: 1 METPNPPSLISPLEFYAHLLQSNL-KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA 59
M+ P P SL + LE +LLQ ++ KS F +LVH R+IK GL SV+L N+LMN Y+
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 60 KTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVT 119
KT +A+K+FDEMP++T SWNT+LSAY+K+G +D CE F+ +P RDSVSWTT+IV
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179
Y IG++ AIR+ +MV++ + PTQFT+T+VLAS A + GKKVHSF+VK GL G
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180
Query: 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE 239
V+V+NSLLNMYAK GD MMAK VFD M ++++SSWN +++LH+ G++DLA AQF+QM E
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Query: 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQ 299
RD+VTWNSMI+G++Q GYD AL +F+ ML+DS L PD+FTLAS LSACANLEKL +GKQ
Sbjct: 241 RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300
Query: 300 IHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359
IH++I+ T FD +G V NALIS Y++ GGVE A++++EQ G L + FT LLDGYIK+
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Query: 360 GDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTXXXXX 419
GD+ A+ IF SL+DRDVVAWTAM+VGYEQ+G +A+ LFRSMV G +PN+YT
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420
Query: 420 XXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479
HGKQIH SA++SGE S+SVSNALITMY+KAGNI +A R F+LI ++T
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNM 539
VSWTSMI+ALAQHG EEA++LFE ML G++PDHITYVGV +ACTH GLV QG++Y++M
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 540 MKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599
MK+V KI PT SH+A MVDL GRAGLLQEA FIE MP+EPDVV WGSLLSACRVHKN+D
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600
Query: 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQ 659
LGK+AAE+LLL+EP+NSGAYSAL NLYS+CGKWE+AA IRKSMK VKK QGFSW++++
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 660 NKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSE 719
+KVHVFGVED HP+++ IY M KIWDEIK+MG+VPDTASVLHD+EE+VKEQ+LRHHSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 720 KLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLC 779
KLAIAFGLISTP+ TTLRIMKNLRVCNDCH+AIKFI KLV REI+VRD TRFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780
Query: 780 SCRDYW 785
SCRDYW
Sbjct: 781 SCRDYW 786
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
Identities = 299/793 (37%), Positives = 473/793 (59%)
Query: 4 PNPPSLISPLEFYAHLLQSNLKSRNPFV--GKLVHARIIKCGLHLSVFLKNSLMNFYAKT 61
PNP + + YA L+ L R + + VH II G + N L++ Y K+
Sbjct: 3 PNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKS 62
Query: 62 ESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMP--NRDSVSWTTIIVT 119
++YA+++FDE+ + T++S Y G + LA VF P RD+V + +I
Sbjct: 63 SELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122
Query: 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAG-KKVHSFVVKTGLSG 178
++ +AI +F +M + P FT SVLA + D + H+ +K+G
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182
Query: 179 CVNVTNSLLNMYAKVGDEMM----AKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQF 234
+V+N+L+++Y+K A+ VFD + K+ SW +++ ++ +G DL
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242
Query: 235 DQMIER-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEK 293
+ M + +V +N+MI+GY G+ EAL M M+ S ++ D+FT S + ACA
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS-SGIELDEFTYPSVIRACATAGL 301
Query: 294 LKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLL 353
L+LGKQ+HAY++R E D + N+L+S Y K G + A+ I E+ +++++ LL
Sbjct: 302 LQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK--DLVSWNALL 358
Query: 354 DGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY 413
GY+ G IG A+ IF ++++++++W M+ G +NG ++ ++LF M REG +P +Y
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418
Query: 414 TXXXXXXXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473
+G+Q HA L+ G SSLS NALITMY+K G + AR+VF +
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 474 HWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533
++VSW ++I AL QHG G EA+ ++E ML+ GI+PD IT + VLTAC+H GLV+QG
Sbjct: 479 PCL-DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 537
Query: 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACR 593
++Y++ M+ V++I P H+A ++DLL R+G +A + IE++P +P W +LLS CR
Sbjct: 538 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCR 597
Query: 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGF 653
VH N++LG IAA+KL + P++ G Y L N++++ G+WE+ A +RK M+ GVKK
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 657
Query: 654 SWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDV-KEQ 712
SW++++ +VH F V+D HP+ +A+Y + + E++ +G+VPDT+ VLHDVE D KE
Sbjct: 658 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKED 717
Query: 713 MLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFH 772
ML HSEK+A+AFGL+ P TT+RI KNLR C DCH+ +F+ +V R+I++RD RFH
Sbjct: 718 MLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFH 777
Query: 773 HFKKGLCSCRDYW 785
HF+ G CSC ++W
Sbjct: 778 HFRNGECSCGNFW 790
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 197/448 (43%), Positives = 290/448 (64%)
Query: 338 QSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAV 397
+SG L++ + +LD Y+K GD+ A+ FDS+ D VAWT M+ G +NG + A
Sbjct: 545 KSGYD-LDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 398 ELFRSMVREGPKPNNYTXXXXXXXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMY 457
+F M G P+ +T + G+QIHA+AL+ + V +L+ MY
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 458 SKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITY 517
+K G+I+ A +F I T +W +M+V LAQHG G+E +QLF++M LGIKPD +T+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNIT-AWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTF 722
Query: 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP 577
+GVL+AC+H GLV + ++ M + IKP H++ + D LGRAGL+++A N IE+M
Sbjct: 723 IGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMS 782
Query: 578 LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAAN 637
+E + +LL+ACRV + + GK A KLL +EP +S AY L N+Y++ KW++
Sbjct: 783 MEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKL 842
Query: 638 IRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPD 697
R MK VKK GFSW++++NK+H+F V+D + Q + IY K+ + +IK+ G+VP+
Sbjct: 843 ARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPE 902
Query: 698 TASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICK 757
T L DVEE+ KE+ L +HSEKLA+AFGL+STP +T +R++KNLRVC DCH+A+K+I K
Sbjct: 903 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAK 962
Query: 758 LVDREIVVRDATRFHHFKKGLCSCRDYW 785
+ +REIV+RDA RFH FK G+CSC DYW
Sbjct: 963 VYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 240/608 (39%), Positives = 358/608 (58%)
Query: 193 VGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGY 252
+G ++ AV M ++N+ N +V ++ G +D A F M +DVV+WN+M+AGY
Sbjct: 247 LGKQLHCFAVTSEM-IQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGY 305
Query: 253 SQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN----LEKLKLGKQIHAYIIRTE 308
SQ G +A+ +F M ++ +K D T ++ +S A E L + +Q+ + I+
Sbjct: 306 SQIGRFEDAVRLFEKM-QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364
Query: 309 FDATGPVGNALISCYAKVGGVEI---AQKI---VEQSGISYLNVIAFTTLLDGYIKIGDI 362
V + S A + G EI A K + ++G N++ L+D Y K +
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV-INQLIDMYAKCKKV 423
Query: 363 GPARRIFDSL--RDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREG--PKPNNYTXXXX 418
AR +FDSL ++RDVV WT M+ GY Q+G A+EL M E +PN +T
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 419 XXXXXXXXXXDHGKQIHASALRSGE-ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ 477
GKQIHA ALR+ + A L VSN LI MY+K G+I+ AR VF+ + +
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY 537
E V+WTS++ HG GEEA+ +F+ M +G K D +T + VL AC+H G+++QG Y+
Sbjct: 544 E-VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602
Query: 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKN 597
N MK V + P P H+A +VDLLGRAG L A IE MP+EP V W + LS CR+H
Sbjct: 603 NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGK 662
Query: 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQ 657
++LG+ AAEK+ + ++ G+Y+ L NLY++ G+W+D IR M++ GVKK G SWV+
Sbjct: 663 VELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Query: 658 IQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHH 717
F V D HP IY + IK++G+VP+T LHDV+++ K+ +L H
Sbjct: 723 GIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEH 782
Query: 718 SEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKG 777
SEKLA+A+G+++TP+ +RI KNLRVC DCH+A ++ +++D +I++RD++RFHHFK G
Sbjct: 783 SEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNG 842
Query: 778 LCSCRDYW 785
CSC+ YW
Sbjct: 843 SCSCKGYW 850
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 268/728 (36%), Positives = 415/728 (57%)
Query: 82 WNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQV 141
WN +S+Y + GR + A VF MP SVS+ +I Y G F+ A ++F EM + +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126
Query: 142 LPTQFTVTSV-----LASCTALGDLSAGKKVHSF-VVKTGLS--GCVN------------ 181
+ + L L ++ + V S+ + +G + GCV+
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 182 --VT-NSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMI 238
V+ N+LL+ Y + A +F + SWN ++ + ++ AR FD M
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 239 ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGK 298
RDVV+WN++I GY+Q+G EA +F D S D FT + +S ++ +
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLF-----DESPVQDVFTWTAMVSGYIQNRMVEEAR 301
Query: 299 QIHAYII-RTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYI 357
++ + R E NA+++ Y + +E+A+++ + + NV + T++ GY
Sbjct: 302 ELFDKMPERNEVS-----WNAMLAGYVQGERMEMAKELFDV--MPCRNVSTWNTMITGYA 354
Query: 358 KIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTXXX 417
+ G I A+ +FD + RD V+W AM+ GY Q+G + +A+ LF M REG + N +
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 418 XXXXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ 477
+ GKQ+H ++ G + V NAL+ MY K G+I A +F + +
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK- 473
Query: 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY 537
+ VSW +MI ++HG GE A++ FE M G+KPD T V VL+AC+H GLV++G++Y+
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533
Query: 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKN 597
M + + P H+A MVDLLGRAGLL++A+N ++NMP EPD WG+LL A RVH N
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593
Query: 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQ 657
+L + AA+K+ +EP+NSG Y L NLY+S G+W D +R M+ GVKK G+SW++
Sbjct: 594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Query: 658 IQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHH 717
IQNK H F V D HP++D I+ + ++ +K+ G+V T+ VLHDVEE+ KE+M+R+H
Sbjct: 654 IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYH 713
Query: 718 SEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKG 777
SE+LA+A+G++ +R++KNLRVC DCH+AIK++ ++ R I++RD RFHHFK G
Sbjct: 714 SERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDG 773
Query: 778 LCSCRDYW 785
CSC DYW
Sbjct: 774 SCSCGDYW 781
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 233/609 (38%), Positives = 350/609 (57%)
Query: 184 NSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVV 243
NS+++ + GD A +FD M ++V SW +V+ SG++D A F QM +D
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160
Query: 244 TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAY 303
WNSM+ GY Q G +AL +F M P K ++ T C + + G+ + +
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQM-------PGKNVISWTTMICGLDQNERSGEALDLF 213
Query: 304 --IIRTEFDATGPVGNALISCYAKVG----GVEIAQKIVEQSGISYLNVIAFTTLLDGYI 357
++R +T +I+ A G+++ I++ G Y ++ +L+ Y
Sbjct: 214 KNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKL-GFLYEEYVS-ASLITFYA 271
Query: 358 KIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTXXX 417
IG +R++FD V WTA+L GY N ++DA+ +F M+R PN T
Sbjct: 272 NCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFAS 331
Query: 418 XXXXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ 477
D GK++H A++ G + V N+L+ MYS +GN+N A VF I +++
Sbjct: 332 GLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKK 390
Query: 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR-Y 536
VSW S+IV AQHG G+ A +F +M+ L +PD IT+ G+L+AC+H G +E+G++ +
Sbjct: 391 SIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLF 450
Query: 537 YNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHK 596
Y M ++ I H+ MVD+LGR G L+EA IE M ++P+ + W +LLSACR+H
Sbjct: 451 YYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHS 510
Query: 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWV 656
++D G+ AA + ++ +S AY L N+Y+S G+W + + +R MK G+ K G SWV
Sbjct: 511 DVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWV 570
Query: 657 QIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRH 716
I+ K H F D H R IY K+ + +++KE+G+ PD S LHDVE++ KE+ML +
Sbjct: 571 VIRGKKHEFFSGDQPHCSR--IYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWY 628
Query: 717 HSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKK 776
HSE+LAIAFGLI+T E + + +MKNLRVC DCH+ IK I +V REIV+RD RFHHFK
Sbjct: 629 HSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKN 688
Query: 777 GLCSCRDYW 785
G CSC DYW
Sbjct: 689 GTCSCGDYW 697
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
Identities = 252/709 (35%), Positives = 402/709 (56%)
Query: 85 ILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPT 144
++++Y+ + A V +P+ S++++I + F +I +F M ++P
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 145 QFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFD 204
+ ++ C L GK++H +GL V S+ +MY + G A+ VFD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 205 GMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQM----IERDVVTWNSMIAGYSQNGYDFE 260
M K+V + + ++ + G L+ +M IE ++V+WN +++G++++GY E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 261 ALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALI 320
A+ MF + PD+ T++S L + + E L +G+ IH Y+I+ V +A+I
Sbjct: 236 AVVMFQK-IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294
Query: 321 SCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR----D 376
Y K G V + Q + V + G + G + A +F+ +++ +
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTXXXXXXXXXXXXXXDHGKQIHA 436
VV+WT+++ G QNG + +A+ELFR M G KPN+ T HG+ H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 437 SALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGE 496
A+R ++ V +ALI MY+K G IN ++ VFN++ + V W S++ + HG +
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN-LVCWNSLMNGFSMHGKAK 471
Query: 497 EAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556
E + +FE ++ +KPD I++ +L+AC GL ++G +Y+ MM + IKP H++ M
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 557 VDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616
V+LLGRAG LQEAY+ I+ MP EPD WG+LL++CR+ N+DL +IAAEKL +EP+N
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 617 GAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRD 676
G Y L N+Y++ G W + +IR M+ +G+KK G SW+Q++N+V+ D HPQ D
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 677 AIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTL 736
I KM +I E+++ G P+ LHDVEE +EQML HSEKLA+ FGL++TP+ T L
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 737 RIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
+++KNLR+C DCH+ IKFI REI +RD RFHHFK G+CSC D+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
Identities = 192/447 (42%), Positives = 287/447 (64%)
Query: 351 TLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSM------V 404
TL+D Y ++G I A RIF + DRD+V W M+ GY + ++DA+ L M V
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504
Query: 405 REGP-----KPNNYTXXXXXXXXXXXXXXDHGKQIHASALRSGEASSLSVSNALITMYSK 459
+G KPN+ T GK+IHA A+++ A+ ++V +AL+ MY+K
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK 564
Query: 460 AGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519
G + +R+VF+ I ++ ++W +I+A HG G+EAI L M+ G+KP+ +T++
Sbjct: 565 CGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623
Query: 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLE 579
V AC+H G+V++G R + +MK + ++P+ H+A +VDLLGRAG ++EAY + MP +
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 580 PDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638
+ AW SLL A R+H NL++G+IAA+ L+ +EP+ + Y L N+YSS G W+ A +
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743
Query: 639 RKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDT 698
R++MK GV+K G SW++ ++VH F D HPQ + + + +W+ +++ G+VPDT
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 803
Query: 699 ASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKL 758
+ VLH+VEED KE +L HSEKLAIAFG+++T T +R+ KNLRVCNDCH A KFI K+
Sbjct: 804 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 863
Query: 759 VDREIVVRDATRFHHFKKGLCSCRDYW 785
VDREI++RD RFH FK G CSC DYW
Sbjct: 864 VDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 232/578 (40%), Positives = 346/578 (59%)
Query: 222 IHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYD--FEALGMFANMLKDSSLKPDKF 279
+H LD A F+QM +R+ +WN++I G+S++ D A+ +F M+ D ++P++F
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 280 TLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQ-----K 334
T S L ACA K++ GKQIH ++ F V + L+ Y G ++ A+
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 335 IVEQSGISYLN-------VIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGY 387
I+E+ + + ++ + ++DGY+++GD AR +FD +R R VV+W M+ GY
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 388 EQNGLNKDAVELFRSMVREGPKPNNYTXXXXXXXXXXXXXXDHGKQIHASALRSGEASSL 447
NG KDAVE+FR M + +PN T + G+ +H A SG
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309
Query: 448 SVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLE 507
+ +ALI MYSK G I A VF + R+ ++W++MI A HG +AI F +M +
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 368
Query: 508 LGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ 567
G++P + Y+ +LTAC+HGGLVE+G+RY++ M +V ++P H+ MVDLLGR+GLL
Sbjct: 369 AGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLD 428
Query: 568 EAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627
EA FI NMP++PD V W +LL ACR+ N+++GK A L+ + P +SGAY AL N+Y+
Sbjct: 429 EAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYA 488
Query: 628 SCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWD 687
S G W + + +R MK ++K G S + I +H F VED HP+ I + + +I D
Sbjct: 489 SQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISD 548
Query: 688 EIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCND 747
+++ G+ P T VL ++EE+ KE +L +HSEK+A AFGLIST +RI+KNLR+C D
Sbjct: 549 KLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICED 608
Query: 748 CHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
CHS+IK I K+ R+I VRD RFHHF+ G CSC DYW
Sbjct: 609 CHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 2.5e-122, Sum P(3) = 2.5e-122
Identities = 201/473 (42%), Positives = 289/473 (61%)
Query: 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR 373
PV L+ YA + G + + + +S A TT+ Y K+ +I AR++FD
Sbjct: 330 PVSGHLMLIYA-IHGYCLKSNFLSHASVS----TALTTV---YSKLNEIESARKLFDESP 381
Query: 374 DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTXXXXXXXXXXXXXXDHGKQ 433
++ + +W AM+ GY QNGL +DA+ LFR M + PN T GK
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 434 IHASALRSGE-ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQH 492
+H +RS + SS+ VS ALI MY+K G+I ARR+F+L+ + E V+W +MI H
Sbjct: 442 VH-DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE-VTWNTMISGYGLH 499
Query: 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552
G G+EA+ +F ML GI P +T++ VL AC+H GLV++G +N M + + +P+ H
Sbjct: 500 GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559
Query: 553 FASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612
+A MVD+LGRAG LQ A FIE M +EP W +LL ACR+HK+ +L + +EKL ++
Sbjct: 560 YACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD 619
Query: 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLH 672
PDN G + L N++S+ + AA +R++ K + K G++ ++I HVF D H
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSH 679
Query: 673 PQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPE 732
PQ IY K+ K+ +++E G+ P+T LHDVEE+ +E M++ HSE+LAIAFGLI+T
Sbjct: 680 PQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEP 739
Query: 733 NTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785
T +RI+KNLRVC DCH+ K I K+ +R IVVRDA RFHHFK G+CSC DYW
Sbjct: 740 GTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SHZ8 | PP168_ARATH | No assigned EC number | 0.6628 | 1.0 | 0.9987 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 785 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-177 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-173 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-57 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-53 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 4e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 531 bits (1370), Expect = e-177
Identities = 263/752 (34%), Positives = 400/752 (53%), Gaps = 100/752 (13%)
Query: 32 GKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAK 91
G+ VHA +++ G L V + N+L+ Y K + A+ VFD MP
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--------------- 250
Query: 92 QGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSV 151
RD +SW +I Y E G + +F M + V P T+TSV
Sbjct: 251 ----------------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 152 LASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV 211
+++C LGD G+++H +VVKTG + V+V NSL+ MY +G
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG----------------- 337
Query: 212 SSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKD 271
A F +M +D V+W +MI+GY +NG +AL +A M +D
Sbjct: 338 --------------SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 272 SSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEI 331
+ + PD+ T+AS LSACA L L +G ++H R
Sbjct: 384 N-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGL---------------------- 420
Query: 332 AQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNG 391
ISY V+ L++ Y K I A +F ++ ++DV++WT+++ G N
Sbjct: 421 ---------ISY--VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
Query: 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSN 451
+A+ FR M+ KPN+ TL A LS + + +L GK+IHA LR+G + N
Sbjct: 470 RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
Query: 452 ALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIK 511
AL+ +Y + G +N A FN ++ VSW ++ HG G A++LF RM+E G+
Sbjct: 529 ALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 512 PDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYN 571
PD +T++ +L AC+ G+V QG Y++ M+ + I P H+A +VDLLGRAG L EAYN
Sbjct: 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646
Query: 572 FIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631
FI MP+ PD WG+LL+ACR+H++++LG++AA+ + ++P++ G Y LCNLY+ GK
Sbjct: 647 FINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706
Query: 632 WEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKE 691
W++ A +RK+M+ G+ G SWV+++ KVH F +D HPQ I + ++++K
Sbjct: 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766
Query: 692 MGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSA 751
G +S + ++E K+ + HSE+LAIAFGLI+T + + KNL +C +CH+
Sbjct: 767 SGLAGSESSSMDEIEVS-KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNT 825
Query: 752 IKFICKLVDREIVVRDATRFHHFKKGLCSCRD 783
+KFI K+V REI VRD +FHHFK G CSC D
Sbjct: 826 VKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 514 bits (1326), Expect = e-173
Identities = 244/664 (36%), Positives = 363/664 (54%), Gaps = 69/664 (10%)
Query: 124 GRFKNAIRMF--VEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVN 181
GR + A+ +F +E LP T +++ +C AL + K V+ V +G
Sbjct: 101 GRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFE---- 155
Query: 182 VTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERD 241
+ Y N V+ +H+ G L AR FD+M ER+
Sbjct: 156 -----PDQYM----------------------MNRVLLMHVKCGMLIDARRLFDEMPERN 188
Query: 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301
+ +W ++I G G EA +F M +D S + T L A A L + G+Q+H
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGD 361
+++T G VG+ +SC L+D Y K GD
Sbjct: 248 CCVLKT-----GVVGDTFVSC----------------------------ALIDMYSKCGD 274
Query: 362 IGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421
I AR +FD + ++ VAW +ML GY +G +++A+ L+ M G + +T S M+ +
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVS 481
S LA L+H KQ HA +R+G + + AL+ +YSK G + AR VF+ + R+ +S
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLIS 393
Query: 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541
W ++I HG G +A+++FERM+ G+ P+H+T++ VL+AC + GL EQG + M
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLG 601
H+IKP H+A M++LLGR GLL EAY I P +P V W +LL+ACR+HKNL+LG
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
Query: 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNK 661
++AAEKL + P+ Y L NLY+S G+ +AA + +++K G+ +W++++ +
Sbjct: 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573
Query: 662 VHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKL 721
H F D LHPQ IY K+ ++ EI E G+V + +L DV+ED ++ R+HSEKL
Sbjct: 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKL 633
Query: 722 AIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSC 781
AIAFGLI+T E T L+I ++ R+C DCH IKFI + REIVVRDA+RFHHFK G CSC
Sbjct: 634 AIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693
Query: 782 RDYW 785
DYW
Sbjct: 694 GDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 1e-76
Identities = 179/586 (30%), Positives = 277/586 (47%), Gaps = 98/586 (16%)
Query: 59 AKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIV 118
A E + P + N +LS + + G L A VF MP RD SW ++
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 119 TYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSG 178
Y + G F A+ ++ M+ V P +T VL +C + DL+ G++VH+ VV+ G
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 179 CVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMI 238
V+V N+L+ MY K GD VVS AR FD+M
Sbjct: 221 DVDVVNALITMYVKCGD---------------------VVS----------ARLVFDRMP 249
Query: 239 ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGK 298
RD ++WN+MI+GY +NG E L +F M + S + PD T+ S +SAC L +LG+
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGR 308
Query: 299 QIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIK 358
++H Y+++T F V N+LI Y +
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSL-------------------------------- 336
Query: 359 IGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAM 418
G G A ++F + +D V+WTAM+ GYE+NGL A+E + M ++ P+ T++++
Sbjct: 337 -GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQE 478
LS + L LD G ++H A R G S + V+NALI MYSK I+ A VF+ I ++
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454
Query: 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYN 538
+SWTS+I L + EA+ F +ML L +KP+ +T + L+AC G + G+ +
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIH- 512
Query: 539 MMKNVHKIKP-------TPSHFASMVDLLGRAGLLQEAYN-FIENMPLEPDVVAWGSLLS 590
H ++ P+ +++DL R G + A+N F + E DVV+W LL+
Sbjct: 513 ----AHVLRTGIGFDGFLPN---ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLT 562
Query: 591 ACRVHKNLDLGKIAAE---KLLLIE--PDNSGAYSALCNLYSSCGK 631
H G +A E +++ PD S LC +C +
Sbjct: 563 GYVAHGK---GSMAVELFNRMVESGVNPDEVTFISLLC----ACSR 601
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 9e-57
Identities = 119/478 (24%), Positives = 227/478 (47%), Gaps = 80/478 (16%)
Query: 124 GRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVT 183
G+ + A+++ M + +V + ++ C + G +V S + + S V +
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 184 NSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVV 243
N++L+M+ + G+ V +W V F +M ERD+
Sbjct: 125 NAMLSMFVRFGE--------------LVHAWYV-----------------FGKMPERDLF 153
Query: 244 TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAY 303
+WN ++ GY++ GY EAL ++ ML + ++PD +T L C + L G+++HA+
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 304 IIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIG 363
++R F+ V NALI+ Y K GD+
Sbjct: 213 VVRFGFELDVDVVNALITMYVKC---------------------------------GDVV 239
Query: 364 PARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSS 423
AR +FD + RD ++W AM+ GY +NG + +ELF +M P+ T+++++S
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWT 483
L G+++H +++G A +SV N+LI MY G+ A +VF+ + + + VSWT
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWT 358
Query: 484 SMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNV 543
+MI ++GL ++A++ + M + + PD IT VL+AC G ++ G + +
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK-------L 411
Query: 544 HKIKPTPSHFA------SMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH 595
H++ + +++++ + + +A N+P E DV++W S+++ R++
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 2e-53
Identities = 116/404 (28%), Positives = 183/404 (45%), Gaps = 73/404 (18%)
Query: 40 IKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEM------PVKTLCSWNTILSAYAKQG 93
C L ++L+ +SI K V+ + P + + N +L + K G
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM--MNRVLLMHVKCG 172
Query: 94 RLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLA 153
L A +F+ MP R+ SW TII + G ++ A +F EM +D T +L
Sbjct: 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
Query: 154 SCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSS 213
+ LG AG+++H V+KTG+ G V+ +L++MY+K GD
Sbjct: 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD------------------ 274
Query: 214 WNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS 273
++ AR FD M E+ V WNSM+AGY+ +GY EAL ++ M +DS
Sbjct: 275 -------------IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSG 320
Query: 274 LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQ 333
+ D+FT + + + L L+ KQ HA +IRT F
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----------------------- 357
Query: 334 KIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLN 393
L+++A T L+D Y K G + AR +FD + +++++W A++ GY +G
Sbjct: 358 ----------LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHAS 437
AVE+F M+ EG PN+ T A+LS + G +I S
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-32
Identities = 90/331 (27%), Positives = 157/331 (47%), Gaps = 47/331 (14%)
Query: 352 LLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN 411
+L +++ G++ A +F + +RD+ +W ++ GY + G +A+ L+ M+ G +P+
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 412 NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFN 471
YT +L + L G+++HA +R G + V NALITMY K G++ +AR VF+
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 472 LIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC------- 524
+ R++ +SW +MI ++G E ++LF M EL + PD +T V++AC
Sbjct: 247 RMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 525 ----THGGLVEQG------------QRYYN--MMKNVHKI------KPTPSHFASMVDLL 560
HG +V+ G Q Y + K+ K S + +M+
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-WTAMISGY 364
Query: 561 GRAGLLQEA---YNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617
+ GL +A Y +E + PD + S+LSAC +LD+G + +L + G
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHEL----AERKG 419
Query: 618 AYS------ALCNLYSSCGKWEDAANIRKSM 642
S AL +YS C + A + ++
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 63/260 (24%)
Query: 30 FVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAY 89
G+ +H ++K G+ F+ +L++ Y+K I A+ VFD MP KT +WN++L+ Y
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVT 149
A G Y+E A+ ++ EM V QFT +
Sbjct: 301 ALHG--------------------------YSE-----EALCLYYEMRDSGVSIDQFTFS 329
Query: 150 SVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK 209
++ + L L K+ H+ +++TG + +L+++Y+K
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----------------- 372
Query: 210 NVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269
W GR++ AR FD+M +++++WN++IAGY +G +A+ MF M+
Sbjct: 373 ----W----------GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 270 KDSSLKPDKFTLASTLSACA 289
+ + P+ T + LSAC
Sbjct: 419 AE-GVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 4e-23
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 23/131 (17%)
Query: 652 GFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEED--- 708
G W + D HP +++ IK G VP+T + HDV+ +
Sbjct: 2 GCVWSEG----KKTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 709 ---VKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNL-RVCNDCHSAIKFICKLVDREIV 764
+K ++L H+EK A+A+GL++T RI+K L R+C DCH ++I K REI+
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 765 VRDATRFHHFK 775
VRD +RFHHFK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 27/222 (12%)
Query: 381 TAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALR 440
+ L +G + A++L SM + A+ + +++ G ++ + AL
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQ 500
S + + + NA+++M+ + G + A VF + R + SW ++ A+ G +EA+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALC 173
Query: 501 LFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH-----FAS 555
L+ RML G++PD T+ VL C GG+ + + VH +H F
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTC--GGIPD-----LARGREVH------AHVVRFGFEL 220
Query: 556 MVDLLG-------RAGLLQEAYNFIENMPLEPDVVAWGSLLS 590
VD++ + G + A + MP D ++W +++S
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMIS 261
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 445 SSLSVSNALITMYSKAGNINAARRVFNLIHWR---QETVSWTSMIVALAQHGLGEEAIQL 501
+LS N L+++ + + +I+ A RV L+ + +T++I A+ G + ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 502 FERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561
F M+ G++ + T+ ++ C G V + Y +M++ +KP F +++ G
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACG 553
Query: 562 RAGLLQEAYNFIENM-----PLEPDVVAWGSLLSAC----RVHKNLDLGKIAAEKLLLIE 612
++G + A++ + M P++PD + G+L+ AC +V + ++ ++ E +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGF 653
P+ Y+ N S G W+ A +I MK GVK + F
Sbjct: 614 PE---VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 67/234 (28%)
Query: 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQ 92
K HA +I+ G L + +L++ Y+K + A+ VFD MP K L SWN +++ Y
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404
Query: 93 GRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVL 152
GR A+ MF M+ + V P T +VL
Sbjct: 405 GRGT-------------------------------KAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 153 ASCTALGDLSAGKKV---------------------------------HSFVVKTGLSGC 179
++C G G ++ ++ + +
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493
Query: 180 VNVTNSLLNMYAKVGDEMMAKAVFD---GMRLKNVSSWNVVVSLHIHSGRLDLA 230
VN+ +LL + + + + GM + ++++ V+++L+ SGR A
Sbjct: 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 68/352 (19%), Positives = 154/352 (43%), Gaps = 21/352 (5%)
Query: 265 FANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYA 324
FA ++++ +L T +S CA+ + + ++ + A + LIS A
Sbjct: 428 FAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483
Query: 325 KVGGVEIAQKIVEQ---SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV---- 377
K G V+ ++ + +G+ NV F L+DG + G + A + +R ++V
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGP--KPNNYTLSAMLSVSSSLASLDHGKQIH 435
V + A++ Q+G A ++ M E P++ T+ A++ ++ +D K+++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 436 ASALRSGEASSLSVSNALITMYSKAGNINAARRVF---NLIHWRQETVSWTSMIVALAQH 492
+ V + S+ G+ + A ++ + + V +++++
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552
G ++A ++ + + GIK ++Y ++ AC++ ++ Y +K++ K++PT S
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVST 721
Query: 553 FASMVDLLGRAGLLQEAYNFIENMP---LEPDVVAWGSLLSACRVHKNLDLG 601
+++ L L +A + M L P+ + + LL A + D+G
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-09
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524
V++ ++I + G EEA++LF M + GIKP+ TY ++
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 5e-09
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS 420
DVV + ++ GY + G ++A++LF M + G KPN YT S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 78/345 (22%), Positives = 140/345 (40%), Gaps = 58/345 (16%)
Query: 224 SGRLDLARAQFDQM----IERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF 279
SG++D F +M +E +V T+ ++I G ++ G +A G + +++ ++KPD+
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPDRV 543
Query: 280 TLASTLSACANLEKLKLGKQIHAYIIRTEFDA-TGPVG------NALISCYAKVGGVEIA 332
+ +SAC + G A+ + E A T P+ AL+ A G V+ A
Sbjct: 544 VFNALISACG-----QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 333 Q---KIVEQSGI-SYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYE 388
+ +++ + I V +T ++ + GD A I+D
Sbjct: 599 KEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDD----------------- 639
Query: 389 QNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLS 448
M ++G KP+ SA++ V+ LD +I A + G
Sbjct: 640 --------------MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 449 VSNALITMYSKAGNINAARRVFNLIHWR--QETVS-WTSMIVALAQHGLGEEAIQLFERM 505
++L+ S A N A ++ I + TVS ++I AL + +A+++ M
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550
LG+ P+ ITY +L A + G + K IKP
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290
DVVT+N++I GY + G EAL +F M K +KP+ +T + +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGI 510
V++ S+I + G EEA++LF+ M E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513
V++ ++I L + G EEA++LF+ M E GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 81 SWNTILSAYAKQGRLDLACEVFNLMPNR----DSVSWTTII 117
++NT++ Y K+G+++ A ++FN M R + +++ +I
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 209 KNVSSWNVVVSLHIHSGRLDLARAQFDQMIER----DVVTWNSMIAGYSQ 254
+V ++N ++ + G+++ A F++M +R +V T++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-05
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 109 DSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVL 152
D V++ T+I Y + G+ + A+++F EM + + P +T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 58/296 (19%)
Query: 46 LSVFLKNSLMNFYAKTESISYAKKVF---DEMPVKTLCS-WNTILSAYAKQGRLDLACEV 101
LS F N LM+ A ++ I A +V E +K C + T++S AK G++D EV
Sbjct: 437 LSTF--NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 102 FNLMPNR---------------------------------------DSVSWTTIIVTYNE 122
F+ M N D V + +I +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 123 IGRFKNAIRMFVEMVQDQ--VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCV 180
G A + EM + + P TV +++ +C G + K+V+ + + + G
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 181 NVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHI----HSGRLDLARAQFDQ 236
V +N ++ GD A +++D M+ K V V S + H+G LD A
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 237 M----IERDVVTWNSMIAGYSQNGYDFE-ALGMFANMLKDSSLKPDKFTLASTLSA 287
I+ V+++S++ G N +++ AL ++ + +K L+P T+ + ++A
Sbjct: 675 ARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 243 VTWNSMIAGYSQNGYDFEALGMFANMLKD 271
VT+NS+I+GY + G EAL +F M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512
++ ++++ALA+ G + A+ + E M G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREG 407
V + +++ GY + G ++A+ELF+ M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 81 SWNTILSAYAKQGRLDLACEVFNLM 105
++N+++S Y K G+L+ A E+F M
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 80 CSWNTILSAYAKQGRLDLACEVFNLMPNRD 109
++NT++ K GR++ A E+F M R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 236 QMIERDVVTWNSMIAGYSQNGYDFEALGMFANM 268
+ ++ DVVT+N++I G + G EA+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.96 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.75 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.75 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.59 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.56 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.19 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.05 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.84 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.84 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.78 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.11 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.06 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.03 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.56 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.52 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.1 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.52 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.46 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.75 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.36 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.11 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.03 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.71 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.62 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.36 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.85 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.93 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 88.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.19 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.23 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.87 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 81.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.2 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.38 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.22 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-138 Score=1211.48 Aligned_cols=766 Identities=33% Similarity=0.564 Sum_probs=717.7
Q ss_pred CCCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhhHHH
Q 003937 9 LISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMP----VKTLCSWNT 84 (785)
Q Consensus 9 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 84 (785)
+.+++.+++.+++++.+.|++++|..+++.|.+.|+.|+..+|..++..|.+.+.++.|..++..+. .++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999998754 468889999
Q ss_pred HHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHH
Q 003937 85 ILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAG 164 (785)
Q Consensus 85 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 164 (785)
+|.+|++.|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhc----CCC
Q 003937 165 KKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQM----IER 240 (785)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~----~~~ 240 (785)
.++|..+.+.|+.||..++|+||.+|+++|++++|.++|++|+.+|+++||++|.+|++.|+.++|.++|++| ..|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 334
Q ss_pred Cc-----------------------------------ccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003937 241 DV-----------------------------------VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTL 285 (785)
Q Consensus 241 ~~-----------------------------------~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll 285 (785)
|. .+||+||.+|++.|++++|.++|++| . .||..+|++++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~----~~d~~s~n~li 361 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-E----TKDAVSWTAMI 361 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-C----CCCeeeHHHHH
Confidence 44 45555555555666666666666666 3 35666666777
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCC--CchHhHHHHHHHHHhcCCHH
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISY--LNVIAFTTLLDGYIKIGDIG 363 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 363 (785)
.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++++.+...+ ++..+|+.|+++|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777777777777777777777777777777777777765553 47889999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 364 PARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 364 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA 523 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 523 (785)
.++..++|+|+++|+++|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999999 569999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKI 603 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 603 (785)
|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999966999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMA 683 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (785)
+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++||..++
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHHHHHhhcCCCCCCcEEEEcccccccchhHHHHHHhhhcCeeE
Q 003937 684 KIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREI 763 (785)
Q Consensus 684 ~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~c~dch~~~~~~s~~~~~~~ 763 (785)
++..+|++.||+||+...+ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++|||
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 9999999999999999877 457889999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccCCCccCCCC
Q 003937 764 VVRDATRFHHFKKGLCSCRD 783 (785)
Q Consensus 764 ~~~~~~~~h~~~~g~csc~~ 783 (785)
||||.+|||||+||+|||+|
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-123 Score=1058.77 Aligned_cols=613 Identities=38% Similarity=0.681 Sum_probs=602.1
Q ss_pred CCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 003937 107 NRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQ-VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNS 185 (785)
Q Consensus 107 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 185 (785)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 186 LLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
|+++|+++|++++|.++|++|+ +||.++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-------------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-------------------------------ERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-------------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999999999 899999999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc
Q 003937 266 ANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN 345 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 345 (785)
++| ...|+.||..||+.++.+|++.+..+.+.++|..+.+.|+.+|..++|+|+++|+++|
T Consensus 213 ~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g------------------ 273 (697)
T PLN03081 213 REM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG------------------ 273 (697)
T ss_pred HHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC------------------
Confidence 999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSL 425 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 425 (785)
++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 274 ---------------~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 274 ---------------DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ---------------CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
|+++.|.++|..+.+.|++||..++|+|+++|+++|++++|.++|++|..+ |+++||+||.+|+++|+.++|+++|++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 9999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW 585 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 585 (785)
.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|++.|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVF 665 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~ 665 (785)
++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHHHHHhhcCCCCCCcEEEEcccccc
Q 003937 666 GVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVC 745 (785)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~c 745 (785)
.+||.+||+.++||..+.++..+|++.||.||+..++|++++++|+..+++||||||++||||++|+|+||||+||||||
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhcCeeEEEecCCcccccCCCccCCCCCC
Q 003937 746 NDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785 (785)
Q Consensus 746 ~dch~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 785 (785)
+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 658 ~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 658 KDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-81 Score=733.37 Aligned_cols=678 Identities=24% Similarity=0.347 Sum_probs=602.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhhHHHHHHHHHccCChhHHHHHHhhCC----CCCccHHH
Q 003937 43 GLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV----KTLCSWNTILSAYAKQGRLDLACEVFNLMP----NRDSVSWT 114 (785)
Q Consensus 43 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~ 114 (785)
...++...+|.++..|++.|.+++|..+|+.|++ ++..+|+.++..+.+.+.++.|.++++.+. .++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3467888999999999999999999999999975 688899999999999999999999998654 46888999
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 003937 115 TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVG 194 (785)
Q Consensus 115 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 194 (785)
++|.+|++.|+.+.|.++|++|. .||..+|+++|.+|++.|++++|.++++.|.+.|+.||.++|+.+++++++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhh
Q 003937 195 DEMMAKAVFDGMR----LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLK 270 (785)
Q Consensus 195 ~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~ 270 (785)
++..+.+++..|. .+|+.+||.||.+|++.|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+| .
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~ 280 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-R 280 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-H
Confidence 9999999998886 5689999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHH
Q 003937 271 DSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFT 350 (785)
Q Consensus 271 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~ 350 (785)
..|+.||..||+.++.+|++.++++.|.++|..+.+.|+.||..+||+|+++|+++|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g----------------------- 337 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG----------------------- 337 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-----------------------
Confidence 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHH
Q 003937 351 TLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 351 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 430 (785)
++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.
T Consensus 338 ----------~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 338 ----------SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred ----------CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 510 (785)
|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|..+ |+++||+||.+|++.|+.++|+++|++|.. ++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 9999999999999999999999999999999999999999999887 999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003937 511 KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLS 590 (785)
Q Consensus 511 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 590 (785)
+||.+||++++.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|.++|+++ .||.++||+||.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 99999999999999999999999999999997 899999999999999999999999999999999 799999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEee
Q 003937 591 ACRVHKNLDLGKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-YVGVKKTQGFSWVQIQNKVHVFGV 667 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~ 667 (785)
+|.++|+.++|.++|++|.+ ..| |..||..++.+|++.|++++|.++|+.|. +.|+.|+.... .+.
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----------~~l 631 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----------ACV 631 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH----------HHH
Confidence 99999999999999999987 456 88999999999999999999999999998 78988764321 111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHH-HHHhhcCCCCCCcEEEEccccccc
Q 003937 668 EDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLA-IAFGLISTPENTTLRIMKNLRVCN 746 (785)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~c~ 746 (785)
.+.. ...+.++++.+.++++++.||..+|...+..+...+.+.. .|+.| ..+.+.+...+.-+.+..-....|
T Consensus 632 v~~l-----~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 632 VDLL-----GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHH-----HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 1100 0112355666777778899999998766665533222211 11111 123344443443333333356788
Q ss_pred chhHHHHHHhhhcCeeEEE-------ecCCcccccCCCccC
Q 003937 747 DCHSAIKFICKLVDREIVV-------RDATRFHHFKKGLCS 780 (785)
Q Consensus 747 dch~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 780 (785)
+-.++.+....|..+.+-- --.+..|-|..|.-|
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 9999999988887763221 113578888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-68 Score=605.80 Aligned_cols=524 Identities=16% Similarity=0.206 Sum_probs=458.1
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCh-----hhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHH
Q 003937 43 GLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTL-----CSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTII 117 (785)
Q Consensus 43 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 117 (785)
...++...|..++..|++.|++++|.++|+.|+.++. ..++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677888888888888999999999998876544 45567777788888999999999999888999999999
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 003937 118 VTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEM 197 (785)
Q Consensus 118 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 197 (785)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||++|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999898899999999999999999999
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHhhhcC------CCCcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 198 MAKAVFDGMR----LKNVSSWNVVVSLHIHSGRLDLARAQFDQMI------ERDVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 198 ~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
+|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998886 5678889999999999999999999998883 57889999999999999999999999999
Q ss_pred hhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCC--CCc
Q 003937 268 MLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGIS--YLN 345 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~ 345 (785)
| .+.|+.|+..+|+.+|.+|++.|+++.|..++..|.+.|+.||..+|++++++|++.|++++|.++|++|... .|+
T Consensus 605 M-~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 605 I-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred H-HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9 8889999999999999999999999999999999999999999999999999999999999999999998765 468
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
..+|+++|.+|++.|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8999999999999999999999999995 589999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS----KAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 497 (785)
|++.|+++.|.++|..|.+.|+.||..+|++|++++. +++...++...|+.+... +...| .++
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~-~~n~w------------~~~ 830 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ-IENKW------------TSW 830 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc-cccch------------HHH
Confidence 9999999999999999999999999999999998743 344444444444333222 33344 356
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-
Q 003937 498 AIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM- 576 (785)
Q Consensus 498 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 576 (785)
|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|.. .+..|+..+|++||+++++. .++|..++++|
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999999999999999999999999888888899999999888864 57888899999999998543 46899999999
Q ss_pred --CCCCCHH
Q 003937 577 --PLEPDVV 583 (785)
Q Consensus 577 --~~~p~~~ 583 (785)
++.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 7778765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=600.43 Aligned_cols=512 Identities=20% Similarity=0.261 Sum_probs=427.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCcc-----HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH
Q 003937 77 KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSV-----SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSV 151 (785)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 151 (785)
++...|..++..+++.|++++|.++|++|+.++.. .++.++.+|.+.|..++|+++|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 56778888889999999999999999999876544 455677789999999999999998863 899999999
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 003937 152 LASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLAR 231 (785)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 231 (785)
|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|...+.
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------------- 503 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------------- 503 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999986555
Q ss_pred HHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHH--hcC
Q 003937 232 AQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIR--TEF 309 (785)
Q Consensus 232 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~ 309 (785)
.||.++|++||.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+
T Consensus 504 -------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 504 -------EANVHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred -------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999 8889999999999999999999999999999998876 567
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHH
Q 003937 310 DATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQ 389 (785)
Q Consensus 310 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 389 (785)
.||..+|++||++|+++|++++|.++|++|...+ ..++..+||++|.+|++
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g-----------------------------i~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYN-----------------------------IKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----------------------------CCCChHHHHHHHHHHHh
Confidence 8888888888888888885555544444443322 13566788888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.|+..+|++||++|+++|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcc---cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 470 FNLIH---WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 470 ~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
|++|. ..||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi 785 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGI 785 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCC
Confidence 88875 34788888888888888888888888888888888888888888888888888888888888888876 688
Q ss_pred CCCchhHHHHHHHHh----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 003937 547 KPTPSHFASMVDLLG----RAG-------------------LLQEAYNFIENM---PLEPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 547 ~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
.||..+|++|++++. +++ ..++|..+|++| ++.||..||++++.++...+..+.
T Consensus 786 ~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 786 KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence 888888888876632 222 346799999999 789999999999987788888898
Q ss_pred HHHHHHHHHh-hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 003937 601 GKIAAEKLLL-IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 601 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 652 (785)
+..+++.+.. -.+.+..+|.+|++++.+. .++|..++++|.+.|+.|+..
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888887653 3455788999999998432 368999999999999987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=602.79 Aligned_cols=466 Identities=27% Similarity=0.409 Sum_probs=449.8
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhhHHHHHHHH
Q 003937 15 FYAHLLQSNLKSRNPFVGKLVHARIIKCG-LHLSVFLKNSLMNFYAKTESISYAKKVFDEMP----VKTLCSWNTILSAY 89 (785)
Q Consensus 15 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~ 89 (785)
+++.+|..+.+.|++++|.++|..|...+ ..|+..+|+.++.+|++.++++.|.+++..|. .||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 78999999999999999999999998865 78999999999999999999999999999986 58999999999999
Q ss_pred HccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHH
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMI 249 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li 249 (785)
.+.+.|+.+|..++|+||++|+++|++++|.++|++|+ ++|+++||+||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------~~~~vt~n~li 297 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------EKTTVAWNSML 297 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCChhHHHHHH
Confidence 99999999999999999999999999999999999998 88999999999
Q ss_pred HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003937 250 AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV 329 (785)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 329 (785)
.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.++|..|.+.|+.+|..++|+|+++|+++|
T Consensus 298 ~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-- 374 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-- 374 (697)
T ss_pred HHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC--
Confidence 9999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003937 330 EIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK 409 (785)
Q Consensus 330 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 409 (785)
++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 375 -------------------------------~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 375 -------------------------------RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred -------------------------------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8889999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHH
Q 003937 410 PNNYTLSAMLSVSSSLASLDHGKQIHASALR-SGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVA 488 (785)
Q Consensus 410 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 488 (785)
||..||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|+++|++++|.++|++|+.+|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999986 699999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP 548 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 548 (785)
|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 9999999999999999975 6776 45999999999999999999999999987 67654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=343.68 Aligned_cols=621 Identities=13% Similarity=0.042 Sum_probs=288.8
Q ss_pred ChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhhHHHHHHH
Q 003937 12 PLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVK---TLCSWNTILSA 88 (785)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 88 (785)
++..+..+...+...|+++.|...++.+.+.... +...+......+...|++++|...|+.+.+. +...+..+...
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 304 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455666666667777777777777777665432 2223333333344556666666666554321 11122233334
Q ss_pred HHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHH
Q 003937 89 YAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGK 165 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 165 (785)
+...|++++|...|+...+ .+...+..+...+.+.|++++|...+..+.... +.+...+..+...+...|++++|.
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555554432 123334444455555555555555555554332 223344444445555555555555
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHhhhcCC---
Q 003937 166 KVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK---NVSSWNVVVSLHIHSGRLDLARAQFDQMIE--- 239 (785)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--- 239 (785)
++++.+.+.. +.+...+..+...+...|+.++|.+.|+.+... +...+..++..+.+.|++++|.++++.+..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 5555554433 223334444444455555555555555443311 122333444444444555555544444421
Q ss_pred CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC--------------------------------CCCChhhHHHHHHH
Q 003937 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS--------------------------------LKPDKFTLASTLSA 287 (785)
Q Consensus 240 ~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g--------------------------------~~p~~~t~~~ll~~ 287 (785)
.+..+|+.+...+...|++++|...|++++.... .+.+..++..+...
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 2333444444444444555555555544421110 11123334444444
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPAR 366 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 366 (785)
+...|+.+.+...+..+.+.+ +.+...+..++..|.+.|++++|..+++++....| +..+|..++..|.+.|++++|.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444332 22233344444445555555555555544433322 3444455555555555555555
Q ss_pred HHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 367 RIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 367 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
..|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..++..+.+..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 55544432 133344444444555555555555555444321 1123344444444444555555555554444433
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
+.+...+..+...|.+.|++++|.+.|+.+. ..|+..++..++..+.+.|+.++|.+.++++.+.. +.+...+..+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 778 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAE 778 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2233344444445555555555555554432 12333444444455555555555555555554421 222334444444
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.|...|++++|..+|+++.+ ..+++...++.+...+.+.|+ .+|+++++++ ...| +..++..+...+...|++++
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555543 122334444555555555555 4455555444 2223 23344444444555555555
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
|...++++++.+|.++.++..++.+|.+.|++++|.+++++|
T Consensus 856 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 856 ALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=339.39 Aligned_cols=625 Identities=12% Similarity=0.035 Sum_probs=440.1
Q ss_pred CChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhhHHHHHH
Q 003937 11 SPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--K-TLCSWNTILS 87 (785)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~ 87 (785)
.+...+..+...+...|+++.|...++...+.. +.+..++..+...+...|++++|...++.+.+ | +...+.....
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 345677777888888999999999999998876 45678888999999999999999999998753 2 3333444444
Q ss_pred HHHccCChhHHHHHHhhCCCCC---ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHH
Q 003937 88 AYAKQGRLDLACEVFNLMPNRD---SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAG 164 (785)
Q Consensus 88 ~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 164 (785)
.+.+.|++++|...|+++.+.+ ...+..+...+...|++++|...|....+.. +.+...+..+...+...|+++.|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 5678899999999998876532 3345556667888999999999999998753 33456677788888999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHhhhcCCC-
Q 003937 165 KKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL---KNVSSWNVVVSLHIHSGRLDLARAQFDQMIER- 240 (785)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~- 240 (785)
.+.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|.+.|+.+...
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 99999998776 55778899999999999999999999998763 35567888999999999999999999988543
Q ss_pred --CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHH
Q 003937 241 --DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNA 318 (785)
Q Consensus 241 --~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (785)
+...+..++..+.+.|++++|+.+++++.. ..+++..++..+...+...|+++.|.+.+..+.+.. +.+...+..
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 345677788999999999999999999943 334566778888888889999999999998887654 334455666
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChh
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNK 394 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 394 (785)
+...|...|++++|.+.|+++....| +..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 77777777777777777777655444 556666666666666666666666665532 23334444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC--------------------------------
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-------------------------------- 442 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-------------------------------- 442 (785)
+|+.+++++.... +.+..++..+..++...|+++.|...+..+.+..
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554321 2233444444445555555555555555444432
Q ss_pred -CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 443 -EASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 443 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
.+.+...+..++..+...|++++|.++++.+... ++...|..+...+...|++++|++.|+++... .|+..++..
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 741 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIK 741 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHH
Confidence 1223344444444444455555555555444321 23444555555666666666666666666653 344455555
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++ ...| +..+++.+...+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 66666666777777766666654 23445666777777777777888887777776 2233 56677777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
++|+..+++++++.|+++.++..++.+|...|++++|.++++++.+.+.
T Consensus 820 -~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 820 -PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6688888888888887777788888888888888888888888876543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=234.05 Aligned_cols=106 Identities=61% Similarity=1.027 Sum_probs=98.0
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhH--------hhhhhhchHHHHH
Q 003937 652 GFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVK--------EQMLRHHSEKLAI 723 (785)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 723 (785)
|+||+++ |.|.+||.+||+. ++..++...||.|++....|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899976 9999999999987 566778889999999999998877766 6688999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-ccccchhHHHHHHhhhcCeeEEEecCCcccccC
Q 003937 724 AFGLISTPENTTLRIMKNL-RVCNDCHSAIKFICKLVDREIVVRDATRFHHFK 775 (785)
Q Consensus 724 ~~~~~~~~~~~~~~~~~nl-~~c~dch~~~~~~s~~~~~~~~~~~~~~~h~~~ 775 (785)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-24 Score=253.95 Aligned_cols=623 Identities=12% Similarity=0.031 Sum_probs=459.7
Q ss_pred ChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChh-h-------
Q 003937 12 PLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLC-S------- 81 (785)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~-~------- 81 (785)
+...+....+-+...++.+.|.+.+.++.... +.++.++..+...+.+.|+.++|.+.+++..+ |+.. .
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44557777888889999999999999998775 44688889999999999999999999999864 3222 1
Q ss_pred ---------HHHHHHHHHccCChhHHHHHHhhCCCCCccHHH----HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhH
Q 003937 82 ---------WNTILSAYAKQGRLDLACEVFNLMPNRDSVSWT----TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTV 148 (785)
Q Consensus 82 ---------~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 148 (785)
...+...+.+.|++++|.+.|+...+.+..... .........|+.++|++.|+++.+.. +-+....
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 123344688999999999999988653222111 11111224589999999999998753 2245566
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCC----------------C---hhHHHHHHHHHHhCCChHHHHHHHhcCCC-
Q 003937 149 TSVLASCTALGDLSAGKKVHSFVVKTGLSG----------------C---VNVTNSLLNMYAKVGDEMMAKAVFDGMRL- 208 (785)
Q Consensus 149 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 208 (785)
..+...+...|+.++|.+.++.+.+..... + ...+...+..+-.....+.|...+.....
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 777788889999999999999987643100 0 01112222222222334455555544321
Q ss_pred -CCcc-hHHHHHHHHHhcCChHHHHHHhhhcCC--C-CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHH-
Q 003937 209 -KNVS-SWNVVVSLHIHSGRLDLARAQFDQMIE--R-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLA- 282 (785)
Q Consensus 209 -~~~~-~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~- 282 (785)
.|.. ........+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++.+....-.++...+.
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 1111 122345677889999999999998844 3 667888999999999999999999999854432222221111
Q ss_pred -----------HHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHH
Q 003937 283 -----------STLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFT 350 (785)
Q Consensus 283 -----------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 350 (785)
..-..+.+.|+++.|...+..+++.. +.+...+..+...|...|++++|++.|++.....| +...+.
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12335668899999999999999875 34556777889999999999999999999777666 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHH
Q 003937 351 TLLDGYIKIGDIGPARRIFDSLRDRD------------VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSA 417 (785)
Q Consensus 351 ~li~~~~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 417 (785)
.+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7877775 467899999998876421 123455667788999999999999999875 454 445566
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---CChh---------HHHHH
Q 003937 418 MLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---QETV---------SWTSM 485 (785)
Q Consensus 418 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---p~~~---------~~~~l 485 (785)
+...+.+.|++++|...++.+++.. +.+......+...+.+.|+.++|...++.+... ++.. .+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 7778999999999999999998754 334444555566678899999999999987532 1111 12345
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL 565 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (785)
...+...|+.++|+++++. .+++...+..+...+...|++++|...|+...+. -+.+...+..++..|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 6678899999999999872 2344556777888999999999999999999862 23457788899999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCChHHHHH
Q 003937 566 LQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS------GAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 566 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~ 637 (785)
.++|++.++.. ...|+ ...+..+..++...|+.++|...+++++...|+++ ..+..++.++...|++++|..
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999987 34554 55677788888999999999999999999876544 356677999999999999999
Q ss_pred HHHHHH-hCCCc
Q 003937 638 IRKSMK-YVGVK 648 (785)
Q Consensus 638 ~~~~m~-~~g~~ 648 (785)
.+++.. ..|+.
T Consensus 733 ~y~~Al~~~~~~ 744 (1157)
T PRK11447 733 TYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhcCCC
Confidence 998875 44554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-23 Score=245.55 Aligned_cols=583 Identities=12% Similarity=0.072 Sum_probs=433.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCC--CCcc-HH-----------
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPN--RDSV-SW----------- 113 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~----------- 113 (785)
.-..+..+...++.+.|++.++++.. .|...+..+...+.+.|+.++|.+.+++..+ |+.. .+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 33445667788999999999998753 4677888899999999999999999998865 3322 22
Q ss_pred -----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 003937 114 -----TTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQF-TVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLL 187 (785)
Q Consensus 114 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 187 (785)
..+...+.+.|++++|+..|+.+.+.. +|+.. ............|+.++|.+.++.+++.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 223446788999999999999998643 33322 11112222335689999999999999985 55777888999
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCc------chH-----------------HHHHHHHHhcCChHHHHHHhhhcCC--CCc
Q 003937 188 NMYAKVGDEMMAKAVFDGMRLKNV------SSW-----------------NVVVSLHIHSGRLDLARAQFDQMIE--RDV 242 (785)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~m~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~~~~--~~~ 242 (785)
..+...|+.++|.+.|+++..... ..| ...+..+-.....+.|...+..... .|.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999998753221 111 1112222222334455555544321 111
Q ss_pred c-cHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc-chH---
Q 003937 243 V-TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKP-DKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATG-PVG--- 316 (785)
Q Consensus 243 ~-~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~--- 316 (785)
. ........+...|++++|+..|++.+.. .| +...+..+-.++.+.|+++.|...+...++....... ..+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 1 1123356677899999999999998543 35 5567777888889999999999999999876543221 111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHH
Q 003937 317 ---------NALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAM 383 (785)
Q Consensus 317 ---------~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~l 383 (785)
..+...+.+.|++++|...|++.....| +...+..+...+.+.|++++|++.|++..+ .+...+..+
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2234567899999999999999777666 677888999999999999999999998875 345567677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCC--------CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREGPKP--------NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
...|. .++.++|+.+++.+....... ....+......+...|++++|.+.+..+++.. +.+..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77664 467899999887654321100 01123445566778999999999999998864 335667788999
Q ss_pred HHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHh
Q 003937 456 MYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI---------TYVGVLTAC 524 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~ 524 (785)
.|.+.|++++|...|+++.. .| +...+..+...+...|+.++|+..++++......++.. .+......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998743 23 45556566666778999999999998865432222221 123455678
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
...|+.++|..+++. .+++...+..+.+.|.+.|+.++|++.+++. ...| +...+..+...+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 2445667788999999999999999999988 4566 4778999999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 603 IAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-21 Score=219.76 Aligned_cols=593 Identities=11% Similarity=-0.017 Sum_probs=395.3
Q ss_pred hcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhhHHHHHHHHHccCChhHHHHH
Q 003937 24 LKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLCSWNTILSAYAKQGRLDLACEV 101 (785)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 101 (785)
...|++++|...|++.++..+.. ..++..|...|.+.|++++|+..+++..+ |+-..+..++..+ ++.++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 33599999999999999887554 88999999999999999999999999875 3323333333333 889999999
Q ss_pred HhhCCC--C-CccHHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCChhhHHHH-HHHHhccCChhHHHHHHH
Q 003937 102 FNLMPN--R-DSVSWTTIIVT--------YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSV-LASCTALGDLSAGKKVHS 169 (785)
Q Consensus 102 f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~ 169 (785)
++++.. | +...+..+... |.+.+ +|.+.++ .......|+..+.... .+.+...++++.+..++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999864 3 33344444444 66664 4444444 3333344556655555 899999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-----CCcc
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAK-VGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-----RDVV 243 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~~~~ 243 (785)
.+.+.+ +.+......|-.+|.. .++ +.|..+++.....+...+..++..|.+.|+.++|.++++++.. |...
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 999998 4456667777778888 477 8899988765566888999999999999999999999998832 2222
Q ss_pred cHHHH------------------------------HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH--hcc
Q 003937 244 TWNSM------------------------------IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC--ANL 291 (785)
Q Consensus 244 ~~~~l------------------------------i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~--~~~ 291 (785)
+|--+ +..+.+.++++-+.++. ...|..... .+... ...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~r~~~~~~~ 355 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL-------ATLPANEML--EERYAVSVAT 355 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh-------cCCCcchHH--HHHHhhcccc
Confidence 22221 23334444444333221 123333322 22222 223
Q ss_pred cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCC---HHH
Q 003937 292 EKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGD---IGP 364 (785)
Q Consensus 292 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~---~~~ 364 (785)
+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|++.-..+. +...-+-++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44555555555555442 22344444444556778888888888888655322 33445567777777665 222
Q ss_pred HHHH-------------------------HHhcCC---C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh
Q 003937 365 ARRI-------------------------FDSLRD---R--DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT 414 (785)
Q Consensus 365 A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 414 (785)
+..+ +..... + +...|..+...+.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 111111 2 45566666666665 7777888877776653 466544
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-hHHHHHHHHHHHc
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-VSWTSMIVALAQH 492 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~~~~~li~~~~~~ 492 (785)
...+..++...|+++.|...+..+... +|+...+..+...+.+.|++++|...|++.... |+. ..+..+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 334444456788888888888776543 333344556667777888888888888766433 222 2222223333445
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYN 571 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 571 (785)
|++++|+..|++..+ +.|+...+..+..++.+.|++++|...+++..+ ..|+ ...++.+...+...|+.++|++
T Consensus 590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887 567766777777888888888888888888765 2343 5566777778888888888888
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 572 FIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 572 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.+++. ...| +...+..+..++...|++++|+..++++++++|++..+.....++.....+++.|.+-+++.-...
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88776 4556 466777888888888888888888888888888877777778888888888887777666654443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-20 Score=209.88 Aligned_cols=565 Identities=11% Similarity=-0.005 Sum_probs=397.2
Q ss_pred HhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCc--cHHHHHHHHHHhCCChhHHHHHH
Q 003937 59 AKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDS--VSWTTIIVTYNEIGRFKNAIRMF 133 (785)
Q Consensus 59 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~a~~~~ 133 (785)
...|++++|...|++..+ .+..++..|...|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 345999999999999864 3567889999999999999999999998876332 3333333333 8999999999
Q ss_pred HHhHHCCCCCC-hhhHHHHHHHH-----hccCChhHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCChHHHHHHHhcC
Q 003937 134 VEMVQDQVLPT-QFTVTSVLASC-----TALGDLSAGKKVHSFVVKTGLSGCVNVTNSL-LNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 134 ~~m~~~g~~p~-~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 206 (785)
+++... .|+ ..++..+.... ....+.+.+.+.++ .......|+..+.... ...|.+.|++++|.+.+.++
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999985 354 33444444330 11234466777666 4334444456655555 89999999999999999998
Q ss_pred CCCC---cchHHHHHHHHHh-cCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC-CCCChhhH
Q 003937 207 RLKN---VSSWNVVVSLHIH-SGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS-LKPDKFTL 281 (785)
Q Consensus 207 ~~~~---~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g-~~p~~~t~ 281 (785)
.+.+ ..-...|...|.+ .++ +++..+++...+.+...+..+...|.+.|+.++|..+++++ +..- -.|+..++
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~-~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN-KPLFTTDAQEKSW 286 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC-cccccCCCccHHH
Confidence 8553 3346667778888 477 99999988766678899999999999999999999999998 4432 23555555
Q ss_pred HHHHHHHhcc------------------------------cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCChH
Q 003937 282 ASTLSACANL------------------------------EKLKLGKQIHAYIIRTEFDATGPVGNALISCYA-KVGGVE 330 (785)
Q Consensus 282 ~~ll~~~~~~------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-~~g~~~ 330 (785)
.-++.-.... +.++.++++ ....|.... -.+-.++. ..+...
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEM-LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchH-HHHHHhhccccCchh
Confidence 4444333222 111111111 012222221 11111121 124444
Q ss_pred HHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----CHhHHHHHHHHHHHcCC---hhHHHHH-
Q 003937 331 IAQKIVEQSGIS-YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD-R-----DVVAWTAMLVGYEQNGL---NKDAVEL- 399 (785)
Q Consensus 331 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~- 399 (785)
++.+.++.+-.. +.+......+.-...+.|+.++|.++|....+ + +...-+-++..|.+.+. ..+++.+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 555555544444 33555555566667789999999999998765 2 23344467777777766 3444333
Q ss_pred -----------HH----------HHHH-cCCCCC---HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 400 -----------FR----------SMVR-EGPKPN---NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 400 -----------~~----------~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
.. .... .+..|+ ...+..+..++.. +..++|...+....... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 11 1111 122233 3344444444444 78888999777777654 4444333445
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHH
Q 003937 455 TMYSKAGNINAARRVFNLIHWR-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 532 (785)
..+...|++++|...|+++... |+...+..+...+.+.|+.++|...|++..+. .|+.. .+..+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHH
Confidence 5557899999999999987543 55666778888899999999999999999985 45543 44444455667799999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
|...+++..+ +.|+...+..+..++.+.|+.++|.+.+++. ...|+ ...++.+...+...|+.++|+..++++++
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999875 4678888999999999999999999999988 56775 66778888889999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 611 IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 611 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
++|+++..+..++.+|...|++++|...+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999997643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-18 Score=175.93 Aligned_cols=381 Identities=19% Similarity=0.211 Sum_probs=254.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC 288 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~ 288 (785)
.+|..+.+.+-..|++++|+.+++.+++ ..+..|..+..++...|+.+.|...|.+.+ .+.|+.+...+-+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lg-- 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLG-- 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchh--
Confidence 4555555555555666666666655533 255678888888888888888888888773 34565443322111
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARR 367 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 367 (785)
......|++++|...+.+.....| -.++|+.|...+-..|++..|+.
T Consensus 192 --------------------------------nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 192 --------------------------------NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred --------------------------------HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 112223444444444444333333 23445555555555555555555
Q ss_pred HHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 368 IFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 368 ~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
-|++...-| ...|-.|...|...+.+++|+..|.+... ..|+. +.+..+...|...|.++.|...++..+...
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~- 316 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ- 316 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-
Confidence 555544322 23444455555555555555555555443 23432 233444444455556666665555555432
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGV 520 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 520 (785)
+.-...|+.|..++...|++.+|...+.+.. -.| -..+.+.|...|...|..++|..+|....+ +.|... .++.|
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNL 394 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNL 394 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhH
Confidence 1124556777777777788888888877653 122 455678888888889999999999988888 788764 78888
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
...|-+.|++++|...+++..+ +.|+ ...|+.+...|-..|+.++|...+.+. .+.|. ....+.|...+...|+
T Consensus 395 a~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 8889999999999999988764 6777 567888889999999999999988877 67786 5688999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
+.+|+..++.++++.|+.+.+|-.++..+---.+|.+-.+
T Consensus 472 i~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999888777777776433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=171.48 Aligned_cols=420 Identities=13% Similarity=0.126 Sum_probs=320.4
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCC---cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcc
Q 003937 215 NVVVSLHIHSGRLDLARAQFDQMIERD---VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANL 291 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~ 291 (785)
..|..-..+.|++++|++--..+-..| ....-.+-..+.+..+.+....--...++ ...--..+|+.+-+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHHHHHHh
Confidence 334444455566666665554442221 11122222444455555544332222211 1222345677777777777
Q ss_pred cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHH
Q 003937 292 EKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIKIGDIGPARRIFD 370 (785)
Q Consensus 292 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~ 370 (785)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|.+.|.+...-+|+. ...+.+...+-..|++++|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 77777777777776654 2234556777888888999999999988877777754 445566667777899999999988
Q ss_pred hcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 003937 371 SLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASS 446 (785)
Q Consensus 371 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 446 (785)
+..+ | -.+.|+.|...+-..|+...|+..|++... +.|+. ..|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7665 3 357899999999999999999999999987 45653 356677777777778888877776665532 233
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-RQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTA 523 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 523 (785)
..++..|...|...|.++-|...+++... .|+ ...||.|..++-..|+..+|...|.+.+. +.|+. .+.+.|..+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 55566677789999999999999998653 344 56899999999999999999999999998 67876 488999999
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 600 (785)
+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998764 4565 567889999999999999999999887 78998 6689999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-++...+.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999998999999999999999999999999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-18 Score=180.87 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=180.4
Q ss_pred HHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHHcCCh
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD-------VVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~ 393 (785)
.+...|++++|...|+++...+| +..++..+...+...|++++|..+++.+.... ...|..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45566777777777777665555 44566666677777777777777766655421 13456666666777777
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
++|+.+|+++.+.. .++..++ +.++..|.+.|++++|.+.|+.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~-----------------------------------~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGAL-----------------------------------QQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHH-----------------------------------HHHHHHHHHhchHHHHHHHHHHH
Confidence 77777777665431 1223333 44444555555555555555544
Q ss_pred ccC-CC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCC
Q 003937 474 HWR-QE------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHK 545 (785)
Q Consensus 474 ~~~-p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 545 (785)
... |+ ...|..+...+...|++++|+..|+++.+. .|+. .++..+...+.+.|++++|.++++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 321 11 112344555566666777777777766653 3432 35555666666677777777777666541
Q ss_pred CCCC--chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 546 IKPT--PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 546 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
.|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++++..|++. .+..+
T Consensus 244 -~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l 321 (389)
T PRK11788 244 -DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRL 321 (389)
T ss_pred -ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHH
Confidence 222 344566777777777777777777776 3456666667777777888888888888888888877443 55555
Q ss_pred HHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 003937 623 CNLYSS---CGKWEDAANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 623 ~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 652 (785)
+..+.. .|+.+++..++++|.+++++++|.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555543 458888888888888888877776
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=182.38 Aligned_cols=255 Identities=17% Similarity=0.128 Sum_probs=197.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcC
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS---LSVSNALITMYSKAG 461 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 461 (785)
.+...|++++|+..|+++.+. .|+ ..++..+...+...|+++.|..++..+.+.+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556666666666666653 233 23455555556666666666666666655432211 245678899999999
Q ss_pred CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHHHHHH
Q 003937 462 NINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH----ITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~ 535 (785)
++++|..+|+++... ++..+++.++..+.+.|++++|++.++++.+.+..++. ..+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998642 36778999999999999999999999999986533332 245567778889999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+++++.+. .+.+...+..+...|.+.|++++|.++++++ ...|+ ..+++.+..++...|+.++|...++++.+..
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999762 2334567788889999999999999999998 34555 3568899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++ ..+..++.+|.+.|++++|..+++++.+.
T Consensus 280 p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 955 55689999999999999999999998765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-16 Score=177.09 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=194.3
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 003937 390 NGLNKDAVELFRSMVREG-PKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAAR 467 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 467 (785)
.+++++|++.|++....+ ..|+. ..+..+...+...|+++.|...+...++.. +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888887654 23433 345555556677888888888888877653 223556777888888999999999
Q ss_pred HHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 468 RVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 468 ~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
..|++... .| +...|..+...+...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|...|+...+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99987642 22 577888899999999999999999999988 56664 4677778888999999999999998875
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV-V-------AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
..+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++++|...++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 23344678888999999999999999999886 444431 1 11222223445699999999999999999999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
..++..++.+|...|++++|.+++++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 889999999999999999999999998653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-15 Score=158.07 Aligned_cols=540 Identities=12% Similarity=0.065 Sum_probs=357.4
Q ss_pred hhHHHHHHhhCCCCCcc-HHHHHHHHHH--hCCChhHHHHHHHHhHHC--CCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 95 LDLACEVFNLMPNRDSV-SWTTIIVTYN--EIGRFKNAIRMFVEMVQD--QVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 95 ~~~A~~~f~~m~~~~~~-~~~~li~~~~--~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
++.|.+.|......+.. ..-.+..++. ..+++..|+.+|...... ...||... .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46666666655432111 1222333333 346788888888885543 23444422 22244567778888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCC---ChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCC--
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAKVG---DEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERD-- 241 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-- 241 (785)
.+++.. +.++.++-.|--.-.... .+..+..++...- ..|++..+.|.+.|.-.|+++.++.+...++..+
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 777764 222222222222222222 2344444444332 4477788888888888888888888888775533
Q ss_pred ----cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhh--HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 242 ----VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFT--LASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 242 ----~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
..+|-.+.++|-..|++++|...|.+.+ +..||.++ +..+-..+...|+++.+...|+.+.+.. +.+..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESL---KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 2346778888888888888888887762 33455533 3446666778888888888888887764 344455
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhc-------C-CCCHhHHHH
Q 003937 316 GNALISCYAKVG----GVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSL-------R-DRDVVAWTA 382 (785)
Q Consensus 316 ~~~li~~y~~~g----~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~-------~-~~~~~~~~~ 382 (785)
...|...|...+ ..+.|..++.+.....| |..+|-.+...|.+..-+.. ...|... . ...+...|.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 556666666664 56777777777665554 77788888777766544332 4433322 2 245667888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc---CCCCCH-----hhHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVRE---GPKPNN-----YTLSAMLS-VSSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
+...+...|++++|...|.+.... -..+|. .|...-+. ..-..++.+.|.+++..+.+... .=+..|--|
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHh
Confidence 888889999999999999887654 223333 23333333 34456788999999999887631 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc----
Q 003937 454 ITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGVLTACTH---- 526 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~---- 526 (785)
.-+-...+...+|...+.... ...++..|+-+...|.....+..|.+-|+...+. ...+|..+..+|.+.|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 223333467778888887764 2236677777777888888888888877776653 233677777777775542
Q ss_pred --------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 003937 527 --------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP--LEPDVVAWGSLLSACRVHK 596 (785)
Q Consensus 527 --------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g 596 (785)
.+..++|+++|.+..+ .-+.|...-|.+.-.++..|++.+|..+|.+.. ..-+..+|-.+...|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 2456788888888875 345567777788888999999999999999882 2335568999999999999
Q ss_pred CHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 597 NLDLGKIAAEKLLLI--EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++..|+++|+..+.. .-+++.....|+.++.+.|+|.+|.+........
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999873 3446778889999999999999999988777643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-15 Score=156.95 Aligned_cols=575 Identities=13% Similarity=0.065 Sum_probs=286.4
Q ss_pred cchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC------CChh-----hHHHHHHHHHccC----
Q 003937 29 PFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV------KTLC-----SWNTILSAYAKQG---- 93 (785)
Q Consensus 29 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~li~~~~~~g---- 93 (785)
+.++-++...+...+ ....+|..+...|.+.|..++...+++.-.. .++. .++.+-..|+..+
T Consensus 24 LPD~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek 101 (1018)
T KOG2002|consen 24 LPDATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEK 101 (1018)
T ss_pred CCChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666766666554 3457888888899999999999999998761 1111 1222222221211
Q ss_pred -------ChhHHHHHHhhCCCCCccHHHHHH---HHHHhCCC--hhHHHHHHHHhHHCCCCCChhhHHHHHHHHh--ccC
Q 003937 94 -------RLDLACEVFNLMPNRDSVSWTTII---VTYNEIGR--FKNAIRMFVEMVQDQVLPTQFTVTSVLASCT--ALG 159 (785)
Q Consensus 94 -------~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g 159 (785)
.+..|..+|+....-+...+..++ ..|...|. .+.|...|...++.. ++|. ...+.+||. ..+
T Consensus 102 ~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 102 KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKK 178 (1018)
T ss_pred hcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccc
Confidence 134455555544332222222211 12233333 588888888887643 2333 344556654 667
Q ss_pred ChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHh------cCChHHHH
Q 003937 160 DLSAGKKVHSFVVKTG--LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIH------SGRLDLAR 231 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~------~g~~~~A~ 231 (785)
++..|..+|..++... ..||+.+.. -.++.++|+.+.|...|....+-|+...++++....- ...+..+.
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence 8999999999977654 466665543 3677899999999999988775555433333322211 13344555
Q ss_pred HHhhhc---CCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 232 AQFDQM---IERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKP-DKFTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 232 ~l~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
.++... ...|++..+.|..-|.-.|++..+..+...++...-..+ -...|-.+-.++-..|+++.|...|-...+.
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 555544 224667777777777777777777777766643221111 1122334444555555555555555444443
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcC----CHHHHHHHHHhcCCC---CHhH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIG----DIGPARRIFDSLRDR---DVVA 379 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~ 379 (785)
.-..-+..+-.|..+|.+.|+++.+...|+.+....| +..+...+...|...+ ..+.|..+......+ |...
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 3222122223445555555555555555555444333 3344444444444443 233333333333332 2233
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003937 380 WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK 459 (785)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 459 (785)
|-.+...+-+.. ...++..|.... ..+...+-.+.+.+.|.+...+..
T Consensus 417 ~l~laql~e~~d-~~~sL~~~~~A~-------------------------------d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 417 WLELAQLLEQTD-PWASLDAYGNAL-------------------------------DILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHH-------------------------------HHHHHcCCCCCHHHHHhHHHHHHH
Confidence 333322222222 111233332211 112223333445555555555555
Q ss_pred cCCHHHHHHHHHhcccC------CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhc
Q 003937 460 AGNINAARRVFNLIHWR------QET------VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTH 526 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~------p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~ 526 (785)
.|++++|...|+....+ +|. .+--.+...+-..++.+.|.+.|....+ ..|.-+ .|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHh
Confidence 55555555555543211 111 0111122333344455555555555555 345443 33333322223
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH---------
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPDVVAWGSLLSACR--------- 593 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~--------- 593 (785)
.+...+|...++.... ....++..++-+.+.+.+...+..|.+-|+.. ...+|..+.-+|.+.|.
T Consensus 543 k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred ccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 3455555555555543 22333333444444555555554444422222 22344444444444331
Q ss_pred ---hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 594 ---VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 594 ---~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+..+.|++.|.+++..+|.|.-+-+.++-+++..|+|++|..+|.+..+..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 12234455555555555566555555555555666666666666666655543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=171.72 Aligned_cols=287 Identities=12% Similarity=0.031 Sum_probs=187.1
Q ss_pred HHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 398 (785)
....|++++|...|+++....| +...|..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|..
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 3445666666666666554444 445566666666666666666666666543 234556666666666777777776
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--
Q 003937 399 LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-- 476 (785)
Q Consensus 399 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 476 (785)
.++.+.... |+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++....
T Consensus 166 ~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 166 LARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 666665432 2222211122235566667777666666655433333334444566777788888888888766422
Q ss_pred CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-c
Q 003937 477 QETVSWTSMIVALAQHGLGEE----AIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-P 550 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 550 (785)
.+...+..+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++..+ ..|+ .
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 255667778888888888775 7888888887 45654 4777777888888888888888888775 2344 4
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAW-GSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
..+..+...|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45666778888888888888888877 345664443 3345567888888888888888888888653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=166.24 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 632 (785)
.+...+...|++++|++.++++ ...| +...+..+...+...|+.++|+..++++++++|++...+..++..+...|+|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 3444455555555555555554 2223 2344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 003937 633 EDAANIRKSMK 643 (785)
Q Consensus 633 ~~a~~~~~~m~ 643 (785)
++|..+++.+.
T Consensus 444 ~~A~~~~~~ll 454 (765)
T PRK10049 444 RQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-15 Score=169.66 Aligned_cols=398 Identities=9% Similarity=0.023 Sum_probs=305.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC-hhhHHHHHHH
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD-KFTLASTLSA 287 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~-~~t~~~ll~~ 287 (785)
....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++.+.. .|+ ......+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3455667788899999999999998854 23445899999999999999999999998543 344 3445667777
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPAR 366 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 366 (785)
+...++.+.|...++.+++.. +.+.. +..+..++...|+.++|+..+++.....| +...+..+...+.+.|..++|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 889999999999999998874 34444 88889999999999999999999888777 5667788899999999999999
Q ss_pred HHHHhcCCCCHh--------HHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCCHh-hHHH----HHHHHhc
Q 003937 367 RIFDSLRDRDVV--------AWTAMLVGYE-----QNGLN---KDAVELFRSMVRE-GPKPNNY-TLSA----MLSVSSS 424 (785)
Q Consensus 367 ~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~a~~~ 424 (785)
..++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+.. .+.++..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 99998886 211 1222222222 22234 7789999999864 2334332 2221 1455667
Q ss_pred cCchHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-----hhHHHHHHHHHHHcCChHH
Q 003937 425 LASLDHGKQIHASALRSGEA-SSLSVSNALITMYSKAGNINAARRVFNLIHWR-QE-----TVSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~ 497 (785)
.++.++|...++.+.+.+.+ |+- ....+...|...|++++|...|+++... |. ...+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987643 322 2223577899999999999999987533 22 2346667778899999999
Q ss_pred HHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 498 AIQLFERMLELG-----------IKPDH---ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 498 A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
|+++++++.... -.|+. ..+..+...+...|++++|.+.++++.. ..+.+...+..+..++...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 999999998742 11332 2345566788899999999999999976 3445577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
|+.++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999988 56786 5566777778889999999999999999999988754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-15 Score=169.22 Aligned_cols=319 Identities=9% Similarity=-0.018 Sum_probs=261.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCCh
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 393 (785)
-++....+.|+.++|..+++......| +...+..++......|++++|...|+.+.. | +...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345567788999999999998776666 566778888888899999999999999875 3 567888889999999999
Q ss_pred hHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 394 KDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
++|+..|++.... .|+ ...+..+...+...|+.+.|...+..+......+.. .+..+ ..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999874 555 455677788899999999999999988776543333 33333 347889999999999998
Q ss_pred cccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHH----HHHHHHHhhhcC
Q 003937 473 IHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQ----GQRYYNMMKNVH 544 (785)
Q Consensus 473 ~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~ 544 (785)
+... ++...+..+...+...|++++|+..|++..+. .|+. ..+..+..++...|++++ |...|++..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 6433 23344555677889999999999999999984 5654 577788889999999986 7999998875
Q ss_pred CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 545 KIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 545 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
+.| +...+..+...|.+.|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|++...+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 334 4678889999999999999999999988 45665 5677888888999999999999999999999987777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.++...|++++|...+++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999998654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=161.42 Aligned_cols=417 Identities=13% Similarity=0.017 Sum_probs=229.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003937 113 WTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAK 192 (785)
Q Consensus 113 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 192 (785)
+...-..+.+.|++++|+..|++.++ +.|+...|..+..++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677788888888888888775 45777778888888888888888888888888765 4456677778888888
Q ss_pred CCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhh
Q 003937 193 VGDEMMAKAVFDGMRLKN---VSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml 269 (785)
.|++++|..-|......+ ......++..+........+...++.- ..+..++..+-. |...........-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS- 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc-
Confidence 888888887765443111 111111111111111122233333221 112223322221 22111111111111111
Q ss_pred hcCCCCCChh-hHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCC---CC-
Q 003937 270 KDSSLKPDKF-TLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGIS---YL- 344 (785)
Q Consensus 270 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~- 344 (785)
....|+.. .+..+-... .-....+++++|.+.|++.... .|
T Consensus 284 --~~~~~~~~~~~~~l~~~~--------------------------------~e~~~~~~y~~A~~~~~~al~~~~~~~~ 329 (615)
T TIGR00990 284 --NELDEETGNGQLQLGLKS--------------------------------PESKADESYEEAARAFEKALDLGKLGEK 329 (615)
T ss_pred --cccccccccchHHHHHHH--------------------------------HHhhhhhhHHHHHHHHHHHHhcCCCChh
Confidence 00111100 000000000 0001234455555555543322 12
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
....|+.+...+...|++++|...|+...+ | +..+|..+...+...|++++|+..|++..+.. ..+...+..+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334455555555555566666666555443 2 23355555555566666666666666655432 1123444555555
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAI 499 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~ 499 (785)
+...|++++|...+...++.. +.+...+..+...+.+.|++++|...|++... .| +...|+.+...+...|++++|+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 556666666666666655543 23345556677777788888888888876532 23 4567777778888888888888
Q ss_pred HHHHHHHHCCCCCCH--H------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHH
Q 003937 500 QLFERMLELGIKPDH--I------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 500 ~~~~~m~~~g~~p~~--~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 570 (785)
+.|++..+. .|+. . .+...+..+...|++++|.+++++..+ +.|+ ...+..+...|.+.|++++|.
T Consensus 488 ~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 888887763 3321 1 112222233446888888888887764 2344 345777888888888888888
Q ss_pred HHHHhC
Q 003937 571 NFIENM 576 (785)
Q Consensus 571 ~~~~~~ 576 (785)
++|++.
T Consensus 563 ~~~e~A 568 (615)
T TIGR00990 563 KLFERA 568 (615)
T ss_pred HHHHHH
Confidence 888776
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-14 Score=158.16 Aligned_cols=430 Identities=10% Similarity=0.018 Sum_probs=225.2
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHH-H--HHHHhhCCCchHH
Q 003937 188 NMYAKVGDEMMAKAVFDGMRLKNVS---SWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS-M--IAGYSQNGYDFEA 261 (785)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 261 (785)
-...+.|+++.|+..|++....+.. ....++..+...|+.++|+..+++...|+...+.. + ...|...|++++|
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3456889999999999988754433 23378888888899999999998887764444333 3 3467777999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCC
Q 003937 262 LGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGI 341 (785)
Q Consensus 262 ~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 341 (785)
+++|++++....-.| ..+..+...+...++.+.|.+.+..+.+. .|+...+-.++..+...++..+|++.++++..
T Consensus 122 iely~kaL~~dP~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPTNP--DLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999998855433332 33345566666777777777777766655 33344444444444445555557777777666
Q ss_pred CCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhHHHHH----HHHHHHcCChhHHHHHHHHHHHcCCCCCHhhH
Q 003937 342 SYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-DVVAWTAM----LVGYEQNGLNKDAVELFRSMVREGPKPNNYTL 415 (785)
Q Consensus 342 ~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 415 (785)
..| +...+..+...+.+.|-...|.++...-++- +...+.-+ +.-.++.+ ..|+..-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a----------------~~~~~~~- 260 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA----------------VLPTRSE- 260 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc----------------ccccccc-
Confidence 655 5566677777777777777777777665531 11111110 11111111 0000000
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHh-CC-CCchHH-HHHH---HHHHHhcCCHHHHHHHHHhcccCC-Chh--HHHHHH
Q 003937 416 SAMLSVSSSLASLDHGKQIHASALRS-GE-ASSLSV-SNAL---ITMYSKAGNINAARRVFNLIHWRQ-ETV--SWTSMI 486 (785)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~-~~~l---i~~y~~~g~~~~A~~~~~~~~~~p-~~~--~~~~li 486 (785)
-.+..-.+.+..-++.+... +- ++.... ..+. +-++.+.|+..++.+.|+.++..+ .+. .-..+.
T Consensus 261 ------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 ------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00000112222222222221 11 111111 1122 223344555555555555554221 111 223344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCC----------CCCC--
Q 003937 487 VALAQHGLGEEAIQLFERMLELGI----KP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHK----------IKPT-- 549 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~-- 549 (785)
++|...+++++|+.+|++.....- .| +......|.-++...+++++|..+++.+.+... -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 555555555555555555543210 11 112234445555555555555555555543110 0111
Q ss_pred -chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 550 -PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
...+..++..+...|++.+|++.++++ ...| |...+..+...+...|+...|+..++.+..++|++..+...++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 112233445555566666666666665 2233 4555555666666666666666666666666666666666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 003937 627 SSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~ 644 (785)
...|+|++|..+.+...+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 666666666665555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=155.69 Aligned_cols=442 Identities=10% Similarity=0.028 Sum_probs=307.8
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCc-chHHHH--HHHHHhcCChHHH
Q 003937 154 SCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV-SSWNVV--VSLHIHSGRLDLA 230 (785)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~l--i~~~~~~g~~~~A 230 (785)
...+.|+.+.|...+.++++........++ .++..+...|+.++|+..+++...++. ..+..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 346889999999999999988522212344 888999999999999999999886643 344444 5578888999999
Q ss_pred HHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 231 RAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 231 ~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
.++|+++.+. |...+..++..|...++.++|++.+.+.. ...|+...+..+.......++...|.+.++.+++.
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~---~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA---ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc---ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999553 45667788889999999999999999983 34566666644444444456665699999999988
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGY 387 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 387 (785)
. +.+...+..++....+.|-...|.++..+-..-.....-.. + +.+.|....+.-..++.. .-.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l--------~~~~~a~~vr~a~~~~~~----~~~-- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L--------ERDAAAEQVRMAVLPTRS----ETE-- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H--------HHHHHHHHHhhccccccc----chh--
Confidence 5 55677788899999999999999988887543221111111 0 222222222221111000 000
Q ss_pred HHcCChhHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 003937 388 EQNGLNKDAVELFRSMVRE-GPKPNN-YTL----SAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG 461 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 461 (785)
+.--.+.|+.-++.+... +..|.. .-| .--+-++...++...+...++.+...+.+....+-.++.++|...+
T Consensus 263 -r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 263 -RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred -hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 000124455555554431 122321 111 1234456677777778888887777776666667778888888888
Q ss_pred CHHHHHHHHHhcccC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHH
Q 003937 462 NINAARRVFNLIHWR--------QETVSWTSMIVALAQHGLGEEAIQLFERMLELG-------------IKPDHI-TYVG 519 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-t~~~ 519 (785)
++++|..+|+.+... ++......|.-+|...+++++|..+++++.+.- ..||-. .+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 888888888876321 123334677888888888888888888888731 112333 3444
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
++..+...|++.+|++.++.+.. .-+-|......+.+++...|...+|++.++.. .+.|+ ..+...........++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 55678889999999999999975 44567888899999999999999999999776 45675 5566677777888899
Q ss_pred HHHHHHHHHHHHhhCCCCchh
Q 003937 598 LDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+++|..+.+.+.+..|+++.+
T Consensus 500 ~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 500 WHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999988744
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-13 Score=132.70 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=232.6
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHH--hcCC-hhHHHHHhhcCCC---CChhhHHHHHHHHHc
Q 003937 18 HLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA--KTES-ISYAKKVFDEMPV---KTLCSWNTILSAYAK 91 (785)
Q Consensus 18 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 91 (785)
.|++ ...+|.+.++.-+|+.|.+.|...+..+-..|+..-+ .+.+ +-.-++.|-.|.. .+..+| +
T Consensus 121 nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K 191 (625)
T KOG4422|consen 121 NLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------K 191 (625)
T ss_pred HHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------c
Confidence 3443 3456899999999999999999999888777766433 3333 3334556767764 455566 4
Q ss_pred cCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 003937 92 QGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFV 171 (785)
Q Consensus 92 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 171 (785)
.|.+.+ ++-+.......++.+||.++|+.-..+.|.+++++-.+...+.+..+|+.+|.+.+- ..++++..+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 555444 444445566778999999999999999999999999998889999999999988653 3448999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHH----hcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHH
Q 003937 172 VKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVF----DGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS 247 (785)
Q Consensus 172 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 247 (785)
+...+.||.+++|+++++.++.|+++.|++.+ .+|++-++ +|...+|..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV---------------------------ePsLsSyh~ 317 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV---------------------------EPSLSSYHL 317 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC---------------------------CcchhhHHH
Confidence 99999999999999999999999988876554 33333333 677777777
Q ss_pred HHHHHhhCCCchH-HHHHHHHhhh---cCCCCC----ChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHH
Q 003937 248 MIAGYSQNGYDFE-ALGMFANMLK---DSSLKP----DKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNAL 319 (785)
Q Consensus 248 li~~~~~~g~~~~-A~~l~~~ml~---~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 319 (785)
+|..+.+.+++.+ |..++.+.+. ...++| |...|...+..|.+..+.+.|.+++.......
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~----------- 386 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD----------- 386 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----------
Confidence 7777777776644 3333433311 122222 34456667777777777777766665432111
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
+++..-..+ ....-|..+....++....+.-+..
T Consensus 387 -----------------------------------------N~~~ig~~~-----~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 387 -----------------------------------------NWKFIGPDQ-----HRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred -----------------------------------------chhhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000001 1123355566677788888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchH
Q 003937 400 FRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLS 448 (785)
Q Consensus 400 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 448 (785)
|..|.-.-.-|+..+...++.|....+.++-...++..++..|......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 8888877778888899899999888899998888888888877544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-11 Score=122.83 Aligned_cols=623 Identities=13% Similarity=0.114 Sum_probs=443.2
Q ss_pred CCCCChHHHHHHHHHhhc-----CCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC---CCh
Q 003937 8 SLISPLEFYAHLLQSNLK-----SRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV---KTL 79 (785)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~ 79 (785)
+...|+.-|..=+++-.. .++...|+.++.++.+.++. ++..|-+-...--..|.+..|+.+...--+ ++.
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSe 319 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSE 319 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchH
Confidence 344455555554444322 34667788888888887743 233343333344567788888777654322 233
Q ss_pred hhHHHHHHHHHccCChhHHHHHHhhCCC--CC-ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHh
Q 003937 80 CSWNTILSAYAKQGRLDLACEVFNLMPN--RD-SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCT 156 (785)
Q Consensus 80 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 156 (785)
..|---+ |....+.|..+...... |+ +..|- .+---..+...=.+++++.++. -|+.+. |=++..
T Consensus 320 DvWLeai----RLhp~d~aK~vvA~Avr~~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAV 387 (913)
T KOG0495|consen 320 DVWLEAI----RLHPPDVAKTVVANAVRFLPTSVRLWL---KAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAV 387 (913)
T ss_pred HHHHHHH----hcCChHHHHHHHHHHHHhCCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHH
Confidence 3332221 22234444444443332 22 22232 2211122333334566666553 354432 224444
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 003937 157 ALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 233 (785)
...+.+.|+.++....+.- +.+... .-+|++..-++.|.+++.+.. ..+...|.+-...--.+|+++...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 5566667888888877763 333333 344566677788888877655 44777888888888888988888888
Q ss_pred hhhcC--------CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHhcccchhhHHHHHHH
Q 003937 234 FDQMI--------ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD--KFTLASTLSACANLEKLKLGKQIHAY 303 (785)
Q Consensus 234 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (785)
.++-. .-+...|-.=...+-..|..--+..+.... ..-|+.-. ..|+..--..|.+.+.++-++.+|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av-igigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV-IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH-HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87652 123344555555666666666666666665 33444332 35788888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhH
Q 003937 304 IIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVA 379 (785)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~ 379 (785)
.++.- +.+..+|...+..--..|..++-..+|++....-| ....|......+-..|++..|+.++....+ .+...
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88763 66778888888888889999999999999766655 667888889999999999999999988765 35678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003937 380 WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK 459 (785)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 459 (785)
|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++..++|.++++..++. ++.-...|-.+.+.|-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHH
Confidence 88888888999999999999999876 4566666655555556678899999999888775 44456778888899999
Q ss_pred cCCHHHHHHHHHhcc-cCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 003937 460 AGNINAARRVFNLIH-WRQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
.++++.|.+.|..-. .-|+ +..|-.|...=-+.|..-+|..+|++.+..+ +-|...|...+..-.+.|..+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987654 3354 4568888887788899999999999998853 335568999999999999999999999
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.+..+ .++.+...|..-|.+..+.++-..+.+.+++.. -|+.+.-++...+.....++.|...|++++..+|++..
T Consensus 777 akALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 98876 566777889999999999998877777777764 45555566667778888999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECC
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQN 660 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~ 660 (785)
+|.-+..-+...|.-++-.+++.+-... .|..|-.|+.+..
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 9999999999999999999999887653 3456666765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-12 Score=138.80 Aligned_cols=534 Identities=13% Similarity=0.128 Sum_probs=362.2
Q ss_pred cCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccCChhHHHHH
Q 003937 92 QGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALGDLSAGKKV 167 (785)
Q Consensus 92 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 167 (785)
.|++++|.+++.++.. .+...|.+|-..|-+.|+.++++..+-..- ...| |..-|..+-.-..+.|.+++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4999999999988765 466789999999999999999887665443 3344 456777777778889999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCc----c----hHHHHHHHHHhcCChHHHHHHhhhcCC
Q 003937 168 HSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV----S----SWNVVVSLHIHSGRLDLARAQFDQMIE 239 (785)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~l~~~~~~ 239 (785)
+.++++.. +++....---...|-+.|+...|..-|.++-..+. . .--.+++.+...++-+.|.+.++..+.
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999987 56666666677889999999999988887764332 1 222345666677777889888887754
Q ss_pred --C---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh----------------------hhH----HHHHHHH
Q 003937 240 --R---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK----------------------FTL----ASTLSAC 288 (785)
Q Consensus 240 --~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~----------------------~t~----~~ll~~~ 288 (785)
. +...+|.++..|.+...++.|......+ ......+|. ..| .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 2 4456889999999999999999988887 442222221 111 1233334
Q ss_pred hcccchhhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC--chHhHHHHHHHHHhcCCHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTE--FDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL--NVIAFTTLLDGYIKIGDIGP 364 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 364 (785)
...+..+....+.....+.. ..-+...+.-+.++|...|++.+|+.+|..+...++ +...|-.+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 56677777777777777777 445667888999999999999999999999888776 67799999999999999999
Q ss_pred HHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHH--------cCCCCCHhhHHHHHHHHhccCchHHHHH
Q 003937 365 ARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVR--------EGPKPNNYTLSAMLSVSSSLASLDHGKQ 433 (785)
Q Consensus 365 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 433 (785)
|...|+.+..-+ ...--+|-..+.+.|+.++|++.+..|.. .+..|+..........+.+.|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999987633 33444566778999999999999998642 2234444444445556667777766544
Q ss_pred HHHHHHHhC----------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc------ccC-CChhHH--
Q 003937 434 IHASALRSG----------------------EASSLSVSNALITMYSKAGNINAARRVFNLI------HWR-QETVSW-- 482 (785)
Q Consensus 434 ~~~~~~~~g----------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~-p~~~~~-- 482 (785)
+-..++... ..........++.+-.+.++.....+-...- ..+ -...-|
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444333211 1112222233333333333322221111100 000 011223
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chh
Q 003937 483 --TSMIVALAQHGLGEEAIQLFERMLELGI--KPDH-I-TY-VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSH 552 (785)
Q Consensus 483 --~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 552 (785)
.-++..+++.++.++|+.+...+.+..+ .++. . .+ ...+.++...+++..|..++..|....+...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4567789999999999999998887542 2222 1 22 34556778899999999999999875443333 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSA--CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC 629 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 629 (785)
|++....+.+.|+-.-=.+++... ..+|+......++.| ....+.+.-|...+-++....|++|.+-.+|+-++.+.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 665556666666544444444444 233443233333443 35667788899999999999999898777777776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=127.43 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=164.5
Q ss_pred hhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc
Q 003937 234 FDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATG 313 (785)
Q Consensus 234 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 313 (785)
+-+...+...+|..||.|+++-...+.|.+++++. .....+.+..+|+.+|.+-+ +..++++...|+...+.||.
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCch
Confidence 33333456677888888888887788888888877 77777777778887777654 33346777888888888888
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~ 389 (785)
.++|+++....+.|+++.|.+.+ .+++.+|. +|...+|..+|.-+++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aa-----------------------------lqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAA-----------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHH-----------------------------HHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 88888888888888666544322 22222222 3555666666666666
Q ss_pred cCChhH-HHHHHHHHHH----cCCCC----CHhhHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCc---hHHHHHH
Q 003937 390 NGLNKD-AVELFRSMVR----EGPKP----NNYTLSAMLSVSSSLASLDHGKQIHASALRS----GEASS---LSVSNAL 453 (785)
Q Consensus 390 ~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~l 453 (785)
.++..+ |..+..+.+. ..++| |..-|.+.+..|.+..+.+.|.+++...... -+.|+ ..-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 555533 4444444432 22333 4556788889999999999999998876543 12232 3455667
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH 514 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 514 (785)
.+..+....++.-...++.|..+ |+..+-.-++.+....|.++-.-+++..|+..|..-+.
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 77888888888888888888644 56666667777777788877777777777776644333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-11 Score=126.51 Aligned_cols=604 Identities=14% Similarity=0.067 Sum_probs=375.9
Q ss_pred cCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhc---CCCCChhhHHHHHHHHHccCChhHHHHH
Q 003937 25 KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDE---MPVKTLCSWNTILSAYAKQGRLDLACEV 101 (785)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 101 (785)
..|+++.|..++..+++.. +.....|..|...|-..|+..++...+-. +...|...|..+-....+.|.++.|+-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999876 55678899999999999999988776543 3345778899999999999999999999
Q ss_pred HhhCCCCCccHHHH---HHHHHHhCCChhHHHHHHHHhHHCCCCCCh----hhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 102 FNLMPNRDSVSWTT---IIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ----FTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 102 f~~m~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
|.+..+.++.-|-. =+..|-+.|+...|.+-|.++.+...+.|- .+-..+++.+...++-+.|.+.++...+.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99887644443433 356778899999999999999875432222 23334456677777778888887777763
Q ss_pred C-CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHhhhc-CCCCcccHHH-
Q 003937 175 G-LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL----KNVSSWNVVVSLHIHSGRLDLARAQFDQM-IERDVVTWNS- 247 (785)
Q Consensus 175 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~~-~~~~~~~~~~- 247 (785)
+ -..+...++.++..|.+...++.|......+.. +|..-|.+- +.-..-+.-. ..++..+|+.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccch
Confidence 3 244556778888888888888888777655542 111100000 0000000000 0112222221
Q ss_pred ---HHHHHh--hCCCchHHHHHHHHhhhcCC--CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003937 248 ---MIAGYS--QNGYDFEALGMFANMLKDSS--LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALI 320 (785)
Q Consensus 248 ---li~~~~--~~g~~~~A~~l~~~ml~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (785)
+.-++. +.+...+++.-|. .... +.-+...|.-+..++.+.|.+..|..++..+......-+..+|-.+.
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 111222 2333444444333 3333 23344567777788888888888888888888776666677888888
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------------hHHHHHHHHH
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV------------VAWTAMLVGY 387 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------------~~~~~li~~~ 387 (785)
.+|...|..++|.+.|+......| +.....+|...+.+.|+.++|...++.+..||. ..--.....+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 888888888888888888766655 567778888888888888888888888765541 1112233456
Q ss_pred HHcCChhHHHHHHHHHHHcC----------------------CCCCHhhHHHHHHHHhccCchHHHHH------HHHHHH
Q 003937 388 EQNGLNKDAVELFRSMVREG----------------------PKPNNYTLSAMLSVSSSLASLDHGKQ------IHASAL 439 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g----------------------~~p~~~t~~~ll~a~~~~~~~~~a~~------~~~~~~ 439 (785)
.+.|+.++=+.+-.+|+... .+-...+...+..+-.+.++....+. ......
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 66777766555555554321 11122222223333333332111111 111112
Q ss_pred HhCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcccC----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 003937 440 RSGEASSL--SVSNALITMYSKAGNINAARRVFNLIHWR----QETV----SWTSMIVALAQHGLGEEAIQLFERMLEL- 508 (785)
Q Consensus 440 ~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~- 508 (785)
..|+..+. ..+.-++..+++.|++++|+.+...+..- .+.. .-..++.+....+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22333332 35567788899999999999998776422 1222 2345667778899999999999999874
Q ss_pred CC--CCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 003937 509 GI--KPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF--ASMVDLLGRAGLLQEAYNFIENM-PLEPDV 582 (785)
Q Consensus 509 g~--~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 582 (785)
+. .|... .|+..++...+.|+-.--.+++..+. ...|+-.+. ......+..++.+.-|+..+-+. ...||.
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 11 34333 45545555555444333233332222 122222122 22223456778888888765554 345665
Q ss_pred HHHHHHHHHH-----------HhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 583 VAWGSLLSAC-----------RVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 583 ~~~~~ll~~~-----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.+++.- .+|-.+-+|...+.+..++.-. ...++..++.+|-..|-..-|..++++..+-
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 5555444431 2344556777888777776543 5678999999999999999999999999764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-12 Score=133.60 Aligned_cols=320 Identities=12% Similarity=0.019 Sum_probs=186.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------hHHHHHHHHHHHc
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV------VAWTAMLVGYEQN 390 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~ 390 (785)
+.++..++..-+..+++..-+..... .-...|..||+-+......+.|..+.++...++. .-+..+.+...+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 44555555555555554333322111 1125688999999999999999999999887644 4577788888999
Q ss_pred CChhHHHHHHHHHHHcCC-CCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGP-KPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
+...++..++.+|.+.-. .|+ ..++-.+++..+..|+.+..+++++.+...|+..+ .-|+....+.++...|.+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhh
Confidence 999999999999987422 222 34556677888888999999999999888876553 334445566788888888
Q ss_pred HHHhcccC--CChhHHHHHHHHHHH--cCChHHHHHHHHHHH---HCCC--CCCHHHHH-HHH-----HHhhccCCHHHH
Q 003937 469 VFNLIHWR--QETVSWTSMIVALAQ--HGLGEEAIQLFERML---ELGI--KPDHITYV-GVL-----TACTHGGLVEQG 533 (785)
Q Consensus 469 ~~~~~~~~--p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~---~~g~--~p~~~t~~-~ll-----~a~~~~g~~~~a 533 (785)
+++....+ |.+..-..+...+-+ ..+++++..+-.... +.|- .|-.++=. .+. .-|...|...--
T Consensus 618 a~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 618 APEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred cchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccH
Confidence 77655322 222211111111111 111222222111110 0000 00000000 000 111122222222
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHK---NLDLGKIAAEKLLL 610 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~ 610 (785)
....+.+.+ .....-|+..|.+.|+++.|..++.++++.|+..+..-|...++.+. ++-++..-.+++.+
T Consensus 698 Ell~elt~~-------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~ 770 (1088)
T KOG4318|consen 698 ELLLELTHE-------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASE 770 (1088)
T ss_pred HHHHHHHhH-------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHh
Confidence 222222221 11223377899999999999999999998888888887877776654 45566666777776
Q ss_pred hCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 611 IEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 611 ~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
+.|..+ ..|.-.+....+....+-|.+.+.+.++....
T Consensus 771 ~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 771 LRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred cccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCC
Confidence 655433 33444444444445555788899999887443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-12 Score=125.57 Aligned_cols=271 Identities=15% Similarity=0.145 Sum_probs=198.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHhHH-----HHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch
Q 003937 355 GYIKIGDIGPARRIFDSLRDRDVVAW-----TAMLVGYEQNG-LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL 428 (785)
Q Consensus 355 ~~~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 428 (785)
-|.+.|+++.|.++++-...+|..+- |.-.--|.+-| ++.+|...-+..+... +-|....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677888888888777766543322 22222334433 4555655555443321 12222222222233456889
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
++|.+.+.+.....-.-....||. .-.+-+.|++++|+..|-++. ...++...-.+.+.|-...++..|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999988876543333333332 224677899999999998775 22366677778888988999999999998776
Q ss_pred HCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 003937 507 ELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVA 584 (785)
Q Consensus 507 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 584 (785)
. +-| |+..+..|...|-+.|+-.+|.+++-.--+ -++-++++...|..-|....-+++|..+|++. -++|+.+-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 555 556888899999999999999998765432 35567888899999999999999999999998 47899999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 585 WGSLLSAC-RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 585 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
|..++..| ++.|++..|..+++......|.|....-.|..++...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999886 678999999999999999999999999999999998885
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-10 Score=114.22 Aligned_cols=491 Identities=12% Similarity=0.131 Sum_probs=330.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHH
Q 003937 78 TLCSWNTILSAYAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLAS 154 (785)
Q Consensus 78 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 154 (785)
++..|...+ ..-..++|+-++.+..+ .....| -+|++..-++.|..++...++ .++.+...|.+....
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKARE-IIPTDREIWITAAKL 449 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHH
Confidence 344554433 33445567776666554 122233 344555666777777777665 245566666665555
Q ss_pred HhccCChhHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhc
Q 003937 155 CTALGDLSAGKKVHSFVV----KTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK------NVSSWNVVVSLHIHS 224 (785)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~ 224 (785)
=-..|..+...++..+-+ ..|+..+..-|-.=...+-+.|..-.+..+......- --.||+.-...+.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 556666666666655443 3466666666655556666666666666655544311 134666666677777
Q ss_pred CChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHH
Q 003937 225 GRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301 (785)
Q Consensus 225 g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (785)
+.++-|..+|...++ .+...|...+..--..|..++-..+|++.+.. .|.
T Consensus 530 ~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pk------------------------ 582 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPK------------------------ 582 (913)
T ss_pred chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCc------------------------
Confidence 777777766665533 35566766666656667777777777766322 121
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHh
Q 003937 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVV 378 (785)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~ 378 (785)
....+-....-+-..|++..|..++.+.-+..| +...|..-+.....+.+++.|+.+|..... +...
T Consensus 583 ----------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 583 ----------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred ----------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 112233334445566777777777776555444 556777777777777788888888877664 4556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
.|.--+..---.++.++|++++++.++. -|+..- |..+-+.+-+.++++.|+..|..=.+. ++..+..|-.|.+.-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 6666565556678888899888887763 566544 444445667777777777776544332 455677888888888
Q ss_pred HhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
-+.|.+-.|..+|++...+ .+...|-..|..-.+.|..+.|..+..+.++. ++-+...|..-|....+.++-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 9999999999999987533 47889999999999999999999999888874 34444577777766666665433333
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.++ ..+-|..+.-++..++-...++++|.+.|.+. ...|| -.+|.-+..-+.+||.-+.-.+++.+...-+|
T Consensus 809 ALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 332 34567777788888999999999999999988 66776 56898899999999999999999999999999
Q ss_pred CCchhHHHHHH
Q 003937 614 DNSGAYSALCN 624 (785)
Q Consensus 614 ~~~~~~~~l~~ 624 (785)
.....|.....
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 77766655543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-10 Score=123.85 Aligned_cols=553 Identities=9% Similarity=0.039 Sum_probs=309.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHhhCCCCC
Q 003937 34 LVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVK----TLCSWNTILSAYAKQGRLDLACEVFNLMPNRD 109 (785)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 109 (785)
.++..+...|+.|+..+|.+++.-|+..|+++.|- +|..|.-+ +...++.++.+..++++.+.|. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667778899999999999999999999999998 88888743 5668999999999999877664 678
Q ss_pred ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH-HhCCCCChhHHHHHHH
Q 003937 110 SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVV-KTGLSGCVNVTNSLLN 188 (785)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 188 (785)
..+|+.|..+|.+.|+... ++..++- .-.+...++..|--..-..++-.+. ..++-||.. .++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999998765 3333331 1122233333333333333332211 112233332 2333
Q ss_pred HHHhCCChHHHHHHHhcCCCCCc-chHHHHHHHHHhc-CChHHHHHHhhhcC-CCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 189 MYAKVGDEMMAKAVFDGMRLKNV-SSWNVVVSLHIHS-GRLDLARAQFDQMI-ERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 189 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~-g~~~~A~~l~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
...-.|-++.+.+++..+|...- .+...+++-.... ..+++-...-.... .+++.+|.+++..-..+|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 34445667777777777762110 0111112211111 22233333333333 489999999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc
Q 003937 266 ANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN 345 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 345 (785)
.+| ++.|+..+..-|..++-+ .++....+.+..-|...|+.|+..|+.-.+-...+.|....+....+. .....
T Consensus 228 ~em-ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~--~hg~t 301 (1088)
T KOG4318|consen 228 YEM-KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL--AHGFT 301 (1088)
T ss_pred HHH-HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch--hhhhh
Confidence 999 999999998888877766 788888899999999999999999998888777775532211111000 00001
Q ss_pred hHhHHHHHHHHHhcCCHHHH--HHHHHhcCC-------CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHh-
Q 003937 346 VIAFTTLLDGYIKIGDIGPA--RRIFDSLRD-------RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREG--PKPNNY- 413 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A--~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~- 413 (785)
...+..+.++..-..+++.- .-+....++ .....|.. +.-....|..++...+-..|..-- ..|+.+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 22233333331111111111 111111111 11122322 222222455555555544443211 111110
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcC
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHG 493 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g 493 (785)
.|. ...++.|..+.+.....-..++ ..+..........+..+..... +||... ..+..-
T Consensus 381 a~~------------~~lrqyFrr~e~~~~~~i~~~~-qgls~~l~se~tp~vsell~~l--rkns~l-r~lv~L----- 439 (1088)
T KOG4318|consen 381 AFG------------ALLRQYFRRIERHICSRIYYAG-QGLSLNLNSEDTPRVSELLENL--RKNSFL-RQLVGL----- 439 (1088)
T ss_pred HHH------------HHHHHHHHHHHhhHHHHHHHHH-HHHHhhhchhhhHHHHHHHHHh--CcchHH-HHHhhh-----
Confidence 011 1223333333322111100000 0111100011111111111111 112110 000000
Q ss_pred ChHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 494 LGEEAIQLFERMLELGIKP-------DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
..+ +... -..| =...-+.++..|...-+..++...-+.... .-+ | ..|..||+.+.....+
T Consensus 440 --ss~-----Eler-~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkl 507 (1088)
T KOG4318|consen 440 --SST-----ELER-SHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKL 507 (1088)
T ss_pred --hHH-----HHhc-ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHH
Confidence 000 0000 0111 112334555566665555666544433332 111 2 5689999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 567 QEAYNFIENMP-----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL---IEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 567 ~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
++|..+.++.. +.-|..-+..+.+...+++....+..+++.+.+ ..|.-..++..+.+.-+..|+.+...++
T Consensus 508 e~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl 587 (1088)
T KOG4318|consen 508 EYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKL 587 (1088)
T ss_pred HHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHH
Confidence 99999999884 223445677888888999999999999888876 2343456777888999999999999999
Q ss_pred HHHHHhCCCcc
Q 003937 639 RKSMKYVGVKK 649 (785)
Q Consensus 639 ~~~m~~~g~~~ 649 (785)
.+-....|+..
T Consensus 588 ~d~lvslgl~e 598 (1088)
T KOG4318|consen 588 ADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhhhhh
Confidence 99999888865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=139.30 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS-VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
...+.+.|++++|++++++-......|+...|-.++. .+...++.+.|...+..+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445566666777766654433322344444444333 334456677777777766655433 44455666666 67888
Q ss_pred HHHHHHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 463 INAARRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQLFERMLELG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 463 ~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
+++|.+++...-. .++...|..++..+...++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888876532 2467778888888999999999999999977533 2345567778888889999999999999988
Q ss_pred hhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 541 KNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENMP--LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 541 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.+ ..|+ ......++..+...|+.+++.++++... .+.|...|..+..++...|+.++|...++++....|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 76 3454 7778889999999999999887777661 2345667889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
....++.++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-11 Score=118.21 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=95.8
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHH----cCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC----CChh-hHHHHH
Q 003937 16 YAHLLQSNLKSRNPFVGKLVHARIIK----CGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV----KTLC-SWNTIL 86 (785)
Q Consensus 16 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~li 86 (785)
|...|...-..|+-+.+.--|..-.. .++..+-.+...|.+-|..+....+|...|+-+.. ||.- .--.+-
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 34444444455665655554443221 23344445555666667777777778777776543 1111 111233
Q ss_pred HHHHccCChhHHHHHHh----hCCCCCc----cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhcc
Q 003937 87 SAYAKQGRLDLACEVFN----LMPNRDS----VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTAL 158 (785)
Q Consensus 87 ~~~~~~g~~~~A~~~f~----~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 158 (785)
..+.+...+..|.+.++ +.|+-+. ...|.+--.+.+.|.++.|+.-|+...+. .||-.+-..|+-++...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 45566677777777654 3343222 23444455677889999999988887653 57776555555555567
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 003937 159 GDLSAGKKVHSFVVKTGLSGC 179 (785)
Q Consensus 159 g~~~~a~~~~~~~~~~g~~~~ 179 (785)
|+.+..++.|..|+.....+|
T Consensus 323 ~d~ekmkeaf~kli~ip~~~d 343 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEID 343 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCC
Confidence 888888888888887644443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-09 Score=102.76 Aligned_cols=491 Identities=13% Similarity=0.118 Sum_probs=287.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|--..+-=...+++..|..+|++.+... ..+...|..-+..=-+...+..|+.+++..+..-.. -...|--.+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 34433334445667777777887776532 223333444444445666777788888777765322 2233444555555
Q ss_pred hCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHhhhc--CCCCcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 192 KVGDEMMAKAVFDGMR--LKNVSSWNVVVSLHIHSGRLDLARAQFDQM--IERDVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
..|++..|+++|+.-. +|+...|++.|+.-.+...++.|..++++. ..|++.+|--....=.++|+...|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6677888888887643 677777777777777777777777777765 457777777777766777777777777776
Q ss_pred hhhcCCCCCChhhHHHHHHHHh----cccchhhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCChHHHHHH-------
Q 003937 268 MLKDSSLKPDKFTLASTLSACA----NLEKLKLGKQIHAYIIRTEFDAT-GPVGNALISCYAKVGGVEIAQKI------- 335 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~------- 335 (785)
.+...| |...-..++.+++ +.+..+.|+.++...+..-.... ..++..+...--+.|+.......
T Consensus 233 Aie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 233 AIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 633322 2222233333333 34455666666666655432211 23334444444444444333322
Q ss_pred -HHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-
Q 003937 336 -VEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN- 412 (785)
Q Consensus 336 -~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 412 (785)
++++...+| |-.+|.-+ +..--..|+.+...++|+....+ ++|-.
T Consensus 310 qYE~~v~~np~nYDsWfdy-------------------------------lrL~e~~g~~~~Ire~yErAIan-vpp~~e 357 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDY-------------------------------LRLEESVGDKDRIRETYERAIAN-VPPASE 357 (677)
T ss_pred HHHHHHHhCCCCchHHHHH-------------------------------HHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence 112222222 34444444 44444445555555555555432 23311
Q ss_pred ------hhHHHHHHHH---hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHhcc-cCCC
Q 003937 413 ------YTLSAMLSVS---SSLASLDHGKQIHASALRSGEASSLSVSNALITMYS----KAGNINAARRVFNLIH-WRQE 478 (785)
Q Consensus 413 ------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~-~~p~ 478 (785)
..|.-+=-+| ....+++.+++++...++ -++...+++.-+--+|+ ++.++..|.+++-... .-|.
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence 1111111111 234566666666666666 34445555555544444 5678888888886543 3467
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
..++...|..=.+.+.++....++++.++ ..| |..+|......-...|+.+.|..+|+.......+......|.+.|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 77777777777788888888888888888 455 446777777777778888888888888776434444455677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhh----CCCC-
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACR-----VHK-----------NLDLGKIAAEKLLLI----EPDN- 615 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~- 615 (785)
+-=...|.++.|..+++++ ...+...+|-++..--. +.+ ++..|..+|+++... .|..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~Kee 594 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEE 594 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 7778888888888888887 33455557766655422 333 566788888888652 3321
Q ss_pred -chhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 616 -SGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 616 -~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
........+.=...|...+...+-.+|
T Consensus 595 R~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 595 RLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 122334444555667777777766666
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-09 Score=105.08 Aligned_cols=373 Identities=16% Similarity=0.155 Sum_probs=215.3
Q ss_pred CCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhhHHHHHHHHHccCChhHHHHHH
Q 003937 26 SRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--K-TLCSWNTILSAYAKQGRLDLACEVF 102 (785)
Q Consensus 26 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f 102 (785)
++++..|+.+|+..+.-. ..+..+|-..+.+-.++..+..|+.+++.... | --..|-..+-+=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456667888888887655 55677888888888899999999999987642 2 2235666666666788899999999
Q ss_pred hhCC--CCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh-CC-CC
Q 003937 103 NLMP--NRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT-GL-SG 178 (785)
Q Consensus 103 ~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~-~~ 178 (785)
++-. +|+..+|++.|.-=.+-...+.|..++++.+- +.|+..+|..-.+.=-+.|....++++++.+++. |- ..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8754 58888999999988888899999999998875 5688888887777777888888888888887765 21 11
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHh----cCCCC-------------------------------------------Cc
Q 003937 179 CVNVTNSLLNMYAKVGDEMMAKAVFD----GMRLK-------------------------------------------NV 211 (785)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------------------------------------------~~ 211 (785)
+...+.+....-.++..++.|+-+|+ .++.. |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 22334444444445556666666653 33311 22
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCCCC-----cccHHHHHH--------HHhhCCCchHHHHHHHHhhhcCCCCCCh
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIERD-----VVTWNSMIA--------GYSQNGYDFEALGMFANMLKDSSLKPDK 278 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~~~~li~--------~~~~~g~~~~A~~l~~~ml~~~g~~p~~ 278 (785)
.+|-..+......|+.+...++|++.+..- -..|.-.|. .=....+.+.+.++|+..+. =++-..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 244444444444455555555555442210 011111111 11223444445555544421 122233
Q ss_pred hhHHHHHHHHh----cccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHH
Q 003937 279 FTLASTLSACA----NLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLL 353 (785)
Q Consensus 279 ~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 353 (785)
+||.-+--.++ +..++..|+++++..+ |..|...++...|..-.+.++++.+.+++++...-+| |..+|....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44443333222 3344555555554432 4444455555555555555555555555555444443 445555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-C----CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 354 DGYIKIGDIGPARRIFDSLRD-R----DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
..-...|+.+.|+.+|+-..+ | ....|-+-|+-=...|.++.|..+|+++++
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 555555555555555554432 2 123444444444455555555555555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-10 Score=110.35 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=167.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 501 (785)
-.|+.-.+.+-++.+++....++. .|--+.-+|....+.++-.+.|+.... +.|..+|---...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346777778888888776543332 255666778889999999999987642 22555666666666677889999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003937 502 FERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLE 579 (785)
Q Consensus 502 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 579 (785)
|++.+. +.|+.+ .|.-+.-+..+.+.++++...|++.++ .++..++.|+-....+.-.++++.|.+.|+.. .+.
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 678664 788887788889999999999999987 45666888999999999999999999999887 444
Q ss_pred CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 580 PD---------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 580 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|+ +.+-.+++-. +=.+++..|..+++++++++|....+|.+|+.+-...|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44 2222222222 223899999999999999999999999999999999999999999999864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-11 Score=125.30 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=118.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
.+.+|-++..+|.-+++.+.|++.|++..+ +.|+ ..+|+.+..-+.....+|.|...|+... ..|+.+|+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence 456788888888888888888888888877 6673 4577777666777777788888876554 3566666654
Q ss_pred ---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 557 ---VDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 ---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|+++++++..++|.|+-.-...+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 34577888888888877777 66674 55556666667777888888888888888888888877788888888888
Q ss_pred hHHHHHHHHHHHh
Q 003937 632 WEDAANIRKSMKY 644 (785)
Q Consensus 632 ~~~a~~~~~~m~~ 644 (785)
+++|...++++++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-10 Score=119.32 Aligned_cols=274 Identities=11% Similarity=0.070 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHhcCCC--CHhH-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccCchHHHHHH
Q 003937 360 GDIGPARRIFDSLRDR--DVVA-WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLS--AMLSVSSSLASLDHGKQI 434 (785)
Q Consensus 360 g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~ 434 (785)
|+++.|++.+....+. ++.. |-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555555555544332 1222 222222335566666666666666542 33332222 223344556666666666
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHH
Q 003937 435 HASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ--ET--------VSWTSMIVALAQHGLGEEAIQLFER 504 (785)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p--~~--------~~~~~li~~~~~~g~~~~A~~~~~~ 504 (785)
++.+.+.. +.+..+...+...|.+.|++++|.+++..+.... +. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66665544 3345555666677777777777777766664320 11 1223333333333444555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 003937 505 MLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-V 582 (785)
Q Consensus 505 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~ 582 (785)
..+. .+.+......+..++...|+.++|...++...+ ..|+.... ++......|+.+++.+.+++. ...|+ +
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 4332 233455666677777777777777777776654 23443211 222223447777777777766 34554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
..+.++...|...+++++|...++++++.+| +...+..|..++.+.|+.++|.+++++-.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777778888888888888888888888 45567778888888888888888777653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=116.44 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=174.9
Q ss_pred cCChHHHHHHHHHhCCCCCchHh-HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHH--HHHHHHHHcCChhHHHHHH
Q 003937 326 VGGVEIAQKIVEQSGISYLNVIA-FTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWT--AMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 326 ~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 400 (785)
.|+++.|++.+.......+++.. |........+.|+.+.|...|.++.+ |+....- .....+...|+++.|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35555555555543333222222 22223333555566666666655543 2211111 1133455556666666666
Q ss_pred HHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 401 RSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSL-------SVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 401 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
+++.+.. |+ ...+..+...+.+.|+++.+..++..+.+.+..++. ..+..++....+..+.+...++++.
T Consensus 177 ~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 6655432 32 333444455555666666666666666555433222 1222333334444556667777777
Q ss_pred ccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 473 IHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 473 ~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
++. +.++.....+..++...|+.++|.+++++..+ ..||.... ++.+....++.+++.+..+...+ ..+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 753 24777888889999999999999999999888 35555321 23344455889999999988876 334456
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+.++..++.+.|++++|.+.|+.. ...|+..++..|...+...|+.++|...+++.+.+
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888899999999999999999988 67899988888999999999999999999998775
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=116.29 Aligned_cols=283 Identities=11% Similarity=-0.016 Sum_probs=153.2
Q ss_pred HhcCChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH--hHHHHHHHHHHHcCChhHHHH
Q 003937 324 AKVGGVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDV--VAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 324 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 398 (785)
...|+++.|.+.+.+.....|+ ...+-.....+.+.|+.+.|...|.+..+ |+. ...-+....+.+.|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3467777777777665555443 33444455666677777777777766532 222 222233556666777777777
Q ss_pred HHHHHHHcCCCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH---H----hcCCHHHHHHHH
Q 003937 399 LFRSMVREGPKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY---S----KAGNINAARRVF 470 (785)
Q Consensus 399 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~----~~g~~~~A~~~~ 470 (785)
.++.+.+.. | +...+..+...+...|+++.+.+.+..+.+.+..++......-...+ . .....+...+.+
T Consensus 175 ~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777653 4 33345566666777777777777777777765433322211111111 1 122233334444
Q ss_pred HhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHH-HHHhhccCCHHHHHHHHHHhhhcCC
Q 003937 471 NLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITY--VGV-LTACTHGGLVEQGQRYYNMMKNVHK 545 (785)
Q Consensus 471 ~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l-l~a~~~~g~~~~a~~~~~~m~~~~~ 545 (785)
+..+.+ .+...+..+...+...|+.++|.+++++..+. .||.... ..+ .......++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 444321 36677777888888888888888888888773 4554321 111 1122233555555555555544221
Q ss_pred CCCCchhHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 546 IKPTPSHFASMVDLLGRAGLLQEAYNFIEN--M-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111113344555555555556555555552 2 3445555555555555555555555555555433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9e-11 Score=122.02 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=201.0
Q ss_pred ChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 328 GVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRD------RDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 328 ~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
+..+|...|+++....+| .+....+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 567888888886665554 46677788999999999999999998875 366788887765533 2233333
Q ss_pred H-HHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-
Q 003937 401 R-SMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q- 477 (785)
Q Consensus 401 ~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p- 477 (785)
. ++... .| ..+.+|.++.+.|+-+++.+.|++.|++...- |
T Consensus 410 aq~Li~~--~~----------------------------------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 410 AQDLIDT--DP----------------------------------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhh--CC----------------------------------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 2 23221 12 23344566677777777788888888765432 2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
...+|+.+..-+.....+|+|...|+..+. +.|... .|-.+.-.|.+.+.++.|.-.|+++.+ +.|. .....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhh
Confidence 566777777777888888888888888766 566654 777777888888888999888887764 5555 455666
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChH
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWE 633 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 633 (785)
+...+-+.|+.|+|+.+++++ .++| |+..----...+...++.++|...+|++.++-|++...|..++.+|-+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777888889999999999888 4455 44444444555667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 003937 634 DAANIRKSMKYVG 646 (785)
Q Consensus 634 ~a~~~~~~m~~~g 646 (785)
.|..-|.-|.+..
T Consensus 609 ~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 609 LALLHFSWALDLD 621 (638)
T ss_pred HHHHhhHHHhcCC
Confidence 9988888776643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-07 Score=94.14 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHh
Q 003937 48 VFLKNSLMNFYAKTESISYAKKVFDEMPV-----KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNE 122 (785)
Q Consensus 48 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 122 (785)
+.+|-..++.+.+.|++...+..|+.... .....|...|......|-++-+.+++++-.+-++..-+--|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45666667777777777777777776432 2334677777777777777777777777666555556667777777
Q ss_pred CCChhHHHHHHHHhHHCC------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHh
Q 003937 123 IGRFKNAIRMFVEMVQDQ------VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGL--SGC--VNVTNSLLNMYAK 192 (785)
Q Consensus 123 ~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~ 192 (785)
.++.++|.+.+...+... .+.+...|.-+-...++.-+.-....+ +.+++.|+ -+| ...|++|.+-|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 777777777776655321 122333444444444443333222222 22223332 222 3567777788888
Q ss_pred CCChHHHHHHHhcCCCC--CcchHHHHHHHHHhc----------------------CChHHHHHHhhhcCCC--------
Q 003937 193 VGDEMMAKAVFDGMRLK--NVSSWNVVVSLHIHS----------------------GRLDLARAQFDQMIER-------- 240 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~~~~~-------- 240 (785)
.|.++.|+.+|++.... .+.-++.+-+.|++- -+++-.+.-|+.+..+
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 88888888777765422 222233333333322 1122233333333222
Q ss_pred -------CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh------hhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 241 -------DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK------FTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 241 -------~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
++..|..-+. +..|+..+-...|.+.++ .+.|.. ..|..+-+-+-+.|+++.|+.+|+...+.
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 2223322222 334556666666666632 222321 12344444455566666666666666655
Q ss_pred cCCCC---cchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 308 EFDAT---GPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 308 g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
.++.- ..+|..-..+-.+..+++.|.++++.
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 44332 23444445555555566666666655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-09 Score=104.76 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=119.6
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCC
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGD 361 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~ 361 (785)
.++......+.+.+-.......|++.....-+....++-...++++|+.+|+++...+| |..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556666666666777777777666666666666677766777766666655555 44444444332221111
Q ss_pred HH-HHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 003937 362 IG-PARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALR 440 (785)
Q Consensus 362 ~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 440 (785)
+. -|..++.- -+--..|...+.+-++-.++.++|...|+.+++
T Consensus 315 Ls~LA~~v~~i------------------------------------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 315 LSYLAQNVSNI------------------------------------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred HHHHHHHHHHh------------------------------------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 11 11111110 111112332222333333333333333333332
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITY 517 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 517 (785)
.+ +.....|+.+.+-|....+...|.+-++.... +.|-..|-.|..+|..-+.+.=|+-.|++..+ ++|+. ..|
T Consensus 359 LN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw 435 (559)
T KOG1155|consen 359 LN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLW 435 (559)
T ss_pred cC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHH
Confidence 21 11122334444445555555555555554321 12555555566666655555556666655555 44433 355
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.+|..+|.+.++.++|+..|..... .-..+...+..|.++|-+.++.++|...|++
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555555666666655555543 1122334455555555555555555544443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-07 Score=91.86 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=130.0
Q ss_pred hHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC-----CCccHHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 003937 65 SYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN-----RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQD 139 (785)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 139 (785)
+.+.....+|| ..|-..+..+.++|++...++.|+.... .....|...+.-..+.|-++-++.++++.++
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk- 166 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK- 166 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-
Confidence 33444444444 4788899999999999999999987542 3445699999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCCh---HHHHHHHhcCCCC-
Q 003937 140 QVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTG------LSGCVNVTNSLLNMYAKVGDE---MMAKAVFDGMRLK- 209 (785)
Q Consensus 140 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~- 209 (785)
+.|.. -.--+.-+...+++++|.+.+..++... .+.+-..|..+.+..++.-+. -....+++.+..+
T Consensus 167 -~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 167 -VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred -cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 34433 4455677788899999999888776331 256667777777777765432 2344555555433
Q ss_pred -C--cchHHHHHHHHHhcCChHHHHHHhhhcCCC--CcccHHHHHHHHhh
Q 003937 210 -N--VSSWNVVVSLHIHSGRLDLARAQFDQMIER--DVVTWNSMIAGYSQ 254 (785)
Q Consensus 210 -~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~li~~~~~ 254 (785)
| ...|++|.+-|.+.|.++.|.++|++.+.. .+.-++.+-.+|++
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 2 457999999999999999999999987553 33345555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-09 Score=103.52 Aligned_cols=328 Identities=12% Similarity=0.098 Sum_probs=235.2
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH-HHHHH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAW-TAMLV 385 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~ 385 (785)
+...|....-...-.+.+.|....|+..|.+.....| .-.+|..|..... +.+.+..+-...+..+...- --+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3345555555555566778888889888888666654 4445555444332 44444444333333221111 12344
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE--ASSLSVSNALITMYSKAGNI 463 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~ 463 (785)
+|....+.++++.-.......|+.-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 5666668888888888888777654444444444445677899999999999998832 12566666655332222222
Q ss_pred -HHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 464 -NAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 464 -~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
--|..+++-=+-+ +.|...+.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|....+...|.+-++...
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2233444333333 44566677788889999999999999998 677764 67777788999999999999999887
Q ss_pred hcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+ -.+.|-..|-.|..+|.-.+...-|+-+|++. .++| |...|.+|...|.+.++.++|+..|.+++...-.+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5 23456778889999999999999999999998 6777 688999999999999999999999999999876688899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 620 SALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 620 ~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.|+++|-+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.8e-12 Score=126.80 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS 458 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 458 (785)
.|..+.......++.++|...++++...+.. +...+..++.. ...+++++|..+.....+.. ++...+..++..|.
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~ 121 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHH
Confidence 3333333344445555555555555443221 22223333333 34555555555544433322 33444556667777
Q ss_pred hcCCHHHHHHHHHhccc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 003937 459 KAGNINAARRVFNLIHW----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 533 (785)
+.|+++++.++++.+.. +++...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.+++
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHH
Confidence 78888888888877542 23666788888888888888899999988888 5676 45677788888888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.++++...+. .+.+...+..+..+|...|+.++|+.++++. ...| |+.+...+..++...|+.++|..+.+++.+
T Consensus 200 ~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 200 REALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888877762 2556667788888888889999999888887 3345 566777888888888999988888887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-09 Score=113.67 Aligned_cols=280 Identities=11% Similarity=0.038 Sum_probs=200.3
Q ss_pred HhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhccCchHHH
Q 003937 357 IKIGDIGPARRIFDSLRD--RD-VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY--TLSAMLSVSSSLASLDHG 431 (785)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a 431 (785)
...|+++.|.+.+....+ ++ ...+-.....+.+.|+++.|.+.+.+..+.. |+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 456799999999988765 33 2333444566778899999999999987643 5443 333346667789999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHH----HHHHHHHcCChHHHHHHHHHH
Q 003937 432 KQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTS----MIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 432 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~----li~~~~~~g~~~~A~~~~~~m 505 (785)
...+..+.+.. +.+..+...+...|...|++++|.+.+..+... ++...+.. ...++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998886 456678889999999999999999999988643 23332321 112223334444445566666
Q ss_pred HHCCC---CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH-HHHHHHH--hhcCCHHHHHHHHHhC-CC
Q 003937 506 LELGI---KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF-ASMVDLL--GRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 506 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~-~~ 578 (785)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+.... -.++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 65321 126677888888999999999999999988762 3443311 0122322 3347778888888776 34
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 579 EPDV---VAWGSLLSACRVHKNLDLGKIAAE--KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 579 ~p~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.|+. ....++...|.+.|++++|.+.++ ...+..| ++..+..++.++.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5543 556788888999999999999999 5777888 55567799999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-12 Score=88.15 Aligned_cols=50 Identities=32% Similarity=0.541 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 477 QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-09 Score=106.15 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=164.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.....+..+...|...|++++|.+.|++... .| +...|..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987642 23 56778888899999999999999999998853 334457777888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|...++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998763222233556777888999999999999999887 3445 46678888888999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-08 Score=100.40 Aligned_cols=496 Identities=13% Similarity=0.058 Sum_probs=236.6
Q ss_pred CChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhc--CCCCChhhHHHHHHH
Q 003937 11 SPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDE--MPVKTLCSWNTILSA 88 (785)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~ 88 (785)
.+..-+..+++-+..+.++..|.-+=+.+...+ .++.-.--+.++|.-.|.+..|..+... +.+.|..+.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 355667778887777888888877777766555 4444444577777777777777666543 334566666666666
Q ss_pred HHccCChhHHHHHHhhCCC-CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHH
Q 003937 89 YAKQGRLDLACEVFNLMPN-RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKV 167 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 167 (785)
+.+..+++.|..++..-+. .++.+|..-=. ...-....+. ++.. +...+..+-.=-+.+......++|+..
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~ 163 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDK 163 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHH
Confidence 6666677777666653321 11111111000 0000000011 0000 000000010011223344455666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhC-CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHH
Q 003937 168 HSFVVKTGLSGCVNVTNSLLNMYAKV-GDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWN 246 (785)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 246 (785)
+...+.. |+..+.++...-... -...+-..+|+.++-. . ....+.+.-+.+|+....++.
T Consensus 164 Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a---~--------~~~ed~e~l~~lyel~~~k~~---- 224 (611)
T KOG1173|consen 164 YKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLA---M--------LTKEDVERLEILYELKLCKNR---- 224 (611)
T ss_pred HHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHH---h--------hhhhHHHHHHHHHHhhhhhhc----
Confidence 6555443 233333322221111 0111223333332200 0 000011111111110000000
Q ss_pred HHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003937 247 SMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKV 326 (785)
Q Consensus 247 ~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 326 (785)
-++....-.+- ...+..-+......-..-|....++....++.+.+.+.. ++....+..-|..+...
T Consensus 225 -----------n~~~~~r~~~~-sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 225 -----------NEESLTRNEDE-SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYEL 291 (611)
T ss_pred -----------cccccccCchh-hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHh
Confidence 00000000000 001112222222222333334455555555555554443 33333444444556666
Q ss_pred CChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHH
Q 003937 327 GGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRS 402 (785)
Q Consensus 327 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 402 (785)
|+..+-..+=.++.+..| ...+|.++.-.|.-.|...+|++.|.....-| ...|-.....|+-.|..++|+..+..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 665555555555666655 56777777777777788888888887655422 35677777778888888888877766
Q ss_pred HHHcCCCCCHh-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-----
Q 003937 403 MVREGPKPNNY-TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR----- 476 (785)
Q Consensus 403 m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----- 476 (785)
.-+. .|... -+-.+---|.+.++++.|.+.+.++... .+.|+.+.+-+.-+....+.+.+|..+|+....+
T Consensus 372 Aarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 372 AARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 5442 11111 1112222355566666777666665543 2445566666666666666666666666544210
Q ss_pred ---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCch
Q 003937 477 ---Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPS 551 (785)
Q Consensus 477 ---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 551 (785)
+ -..+|+.|..+|.+.+++++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|.+.. .+.|+-.
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~ 523 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNI 523 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccH
Confidence 0 122355555556666666666666666555 233 33455555555555556666555555443 3445544
Q ss_pred hHHHH
Q 003937 552 HFASM 556 (785)
Q Consensus 552 ~~~~l 556 (785)
+-..+
T Consensus 524 ~~~~l 528 (611)
T KOG1173|consen 524 FISEL 528 (611)
T ss_pred HHHHH
Confidence 33333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-06 Score=94.06 Aligned_cols=585 Identities=13% Similarity=0.151 Sum_probs=330.3
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhhHHHHHHHHHccCChh
Q 003937 19 LLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLCSWNTILSAYAKQGRLD 96 (785)
Q Consensus 19 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 96 (785)
++..++..|.++.+.-. ..+-|..|| |-.+++...+ -+++.+.++...|++ +...-.+.+...+...+...
T Consensus 487 Vi~cfAE~Gqf~KiilY---~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILY---AKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHHHhcchhHHHHH---HHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhh
Confidence 66777777777665543 345677777 3344555444 566777766666654 22222333333333222222
Q ss_pred HHHH-------------------HHhhCC--CC---------C---ccHHHHHHHHHHhCCChhHHHHHHHHhHHC---C
Q 003937 97 LACE-------------------VFNLMP--NR---------D---SVSWTTIIVTYNEIGRFKNAIRMFVEMVQD---Q 140 (785)
Q Consensus 97 ~A~~-------------------~f~~m~--~~---------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g 140 (785)
.+.. +++... .| + ..-|..+.+.|.++|-...|++.|.+...- -
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~v 639 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVV 639 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHH
Confidence 2211 111110 11 1 122778888889999999999887765420 0
Q ss_pred CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC-------------
Q 003937 141 VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR------------- 207 (785)
Q Consensus 141 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------- 207 (785)
+..+...---++. +-..-.++.+.+.+..|+..++..+..+.-.+..-|...=-.+.-.++|+...
T Consensus 640 Vhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 640 VHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 0000000111122 22233567777777888877777766665555555555544555566665554
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-------------------C------------CcccH------HHH
Q 003937 208 --LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-------------------R------------DVVTW------NSM 248 (785)
Q Consensus 208 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-------------------~------------~~~~~------~~l 248 (785)
..|....-..|.+.|+.|++.+.+++.++-.- | |.+.| -..
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ky 798 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 798 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHH
Confidence 23555666778888888888888887655410 1 11111 112
Q ss_pred HHHHhhCCCchHHHHHHHHhh--------------hcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcc
Q 003937 249 IAGYSQNGYDFEALGMFANML--------------KDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGP 314 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml--------------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 314 (785)
|..|.+.-++.+.-.+...++ .-.|..| ..-+..-+-+.+++..-...++..+..| ..|..
T Consensus 799 IE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a 873 (1666)
T KOG0985|consen 799 IEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPA 873 (1666)
T ss_pred HHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchH
Confidence 333333322222111111110 0011111 1123334445566666666777777777 45788
Q ss_pred hHHHHHHHHHhcCChHHHH----HHHH-----H-hCCCCC---------------------chHhHHHHHHHHHhcCCHH
Q 003937 315 VGNALISCYAKVGGVEIAQ----KIVE-----Q-SGISYL---------------------NVIAFTTLLDGYIKIGDIG 363 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~----~~~~-----~-~~~~~~---------------------~~~~~~~li~~~~~~g~~~ 363 (785)
++|+|...|..+++-.+-. ..++ + ...++| ....|....+.+.+..+.+
T Consensus 874 ~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~ 953 (1666)
T KOG0985|consen 874 THNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPD 953 (1666)
T ss_pred HHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChH
Confidence 9999999888776544321 0011 1 122222 1123444455555555554
Q ss_pred HHHHHHH-----------hcC-----C-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhcc
Q 003937 364 PARRIFD-----------SLR-----D-RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK-PNNYTLSAMLSVSSSL 425 (785)
Q Consensus 364 ~A~~~f~-----------~~~-----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~ 425 (785)
-=.+++. ++. + .|+..-+.-+.++...+-+.+-++++++..-..-. .....+..++---+-.
T Consensus 954 LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik 1033 (1666)
T KOG0985|consen 954 LWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK 1033 (1666)
T ss_pred HHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh
Confidence 4333332 111 1 35555667788899999999999999988643211 1111111111111111
Q ss_pred CchHHHHHHHHHHHHh-----------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHH
Q 003937 426 ASLDHGKQIHASALRS-----------------------GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSW 482 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~-----------------------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~ 482 (785)
.+.....+....+-.. .+..+....+.||+ .-+.++.|.+.-++.. .+..|
T Consensus 1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vW 1107 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVW 1107 (1666)
T ss_pred cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHH
Confidence 1112222222111111 11222222222222 2234444444444332 45679
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR 562 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (785)
..+..+-.+.|...+|++-|-+ .-|+..|..++.++++.|.|++-.+++....+ ..-+|.+. +.||-+|++
T Consensus 1108 sqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHH
Confidence 9999999999999999987733 23456899999999999999999999987765 55667665 679999999
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 563 AGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 563 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.+++.|-++++. -||..-.....+-|...|.++.|+-++. +...|.-|+..+...|.+..|...-++.
T Consensus 1179 t~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888874 3787778888899999999999988887 4456778888888889888887765555
Q ss_pred H
Q 003937 643 K 643 (785)
Q Consensus 643 ~ 643 (785)
.
T Consensus 1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred c
Confidence 3
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-07 Score=94.71 Aligned_cols=219 Identities=15% Similarity=0.079 Sum_probs=162.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 387 YEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
+.-.|+...|...|+..+.....++.. |.-+-..+....+.++..+.|..+.+.. +.++.+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888765444442 6666667888888888888888887764 33455666667777778899999
Q ss_pred HHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhc
Q 003937 467 RRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNV 543 (785)
Q Consensus 467 ~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 543 (785)
..=|++... .| ++..|-.+-.+.-+.+++++++..|++.++. -|+. ..|+.....+...++++.|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 999987653 22 5667777777777788999999999999884 4554 5888888899999999999999998875
Q ss_pred CCCCCC---------chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 544 HKIKPT---------PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 544 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+.|+ +.+.-+++- +.-.+++.+|.+++.+. .+.|. ...+-+|...-.+.|++++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 111122222 12338999999999988 67774 5688888888899999999999999987754
Q ss_pred C
Q 003937 613 P 613 (785)
Q Consensus 613 p 613 (785)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=85.32 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 375 RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-07 Score=98.11 Aligned_cols=493 Identities=13% Similarity=0.094 Sum_probs=285.2
Q ss_pred hCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHH---hccCChhHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhC
Q 003937 122 EIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASC---TALGDLSAGKKVHSFVVKTGLSGC-----VNVTNSLLNMYAKV 193 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~ 193 (785)
..+.++.++.-+..-...+...+..++..+...+ ...++.+++ ++-..+..-+.|. +.++-.++--+.+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777776665543 344555555 3333333333332 22222222223333
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhh
Q 003937 194 GDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLK 270 (785)
Q Consensus 194 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~ 270 (785)
+++. .|...|..+.-++.+.|+++.+.+.|++... .....|+.+-..|...|....|+.++++-+.
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 3332 3445566677788888999999999988744 2456799999999999999999999987733
Q ss_pred cCCCCCChhhHHHHHHHHh-cccchhhHHHHHHHHHHh--cC--CCCcchHHHHHHHHHhc----C-------ChHHHHH
Q 003937 271 DSSLKPDKFTLASTLSACA-NLEKLKLGKQIHAYIIRT--EF--DATGPVGNALISCYAKV----G-------GVEIAQK 334 (785)
Q Consensus 271 ~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~ 334 (785)
...-.+|...+...-..|. +.+..+.+..+-..++.. +. ......+-.+.-+|... . ...++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 3332333344444444454 456667776666666652 11 11222233333333221 1 2334566
Q ss_pred HHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003937 335 IVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK 409 (785)
Q Consensus 335 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 409 (785)
.+++....+| |..+...+.--|...++++.|.....+.. ..+...|..+.-.+...+++.+|+.+.+..... .
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~ 543 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--F 543 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--h
Confidence 6676544443 34444444445666667777777666543 346778888877788888888888887765543 1
Q ss_pred CCHh-hHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc---C-CChh-HH
Q 003937 410 PNNY-TLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSKAGNINAARRVFNLIHW---R-QETV-SW 482 (785)
Q Consensus 410 p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~-p~~~-~~ 482 (785)
|+.. ....-+..-...++.+++......+...- -.+ .....|+-....+.+..+.. . .|.+ ++
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~----------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY----------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh----------hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 2211 11111111112344444433333222210 000 00111222233334433321 1 1222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
..+. +... -+...+..-.. |...-+.|+.. .|......+...+..++|...+.+..+ -..-....|.
T Consensus 614 r~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~ 688 (799)
T KOG4162|consen 614 RYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYY 688 (799)
T ss_pred HHHH-HHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHH
Confidence 2222 2221 11111110000 22222233221 244455577888899999988887764 2233355566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKI--AAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
-....+...|.++||.+.|... -++|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 6667888899999999988776 67886 6688899999999999888888 999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 003937 631 KWEDAANIRKSMKY 644 (785)
Q Consensus 631 ~~~~a~~~~~~m~~ 644 (785)
+.++|.+.|+...+
T Consensus 769 d~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 769 DSKQAAECFQAALQ 782 (799)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-07 Score=94.95 Aligned_cols=261 Identities=12% Similarity=0.090 Sum_probs=199.9
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
++...-.-..-+...+++.+..+++....+. .++....+..=|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3344444455677788999999999988765 2344444555555666777766655555555554 4566778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 532 (785)
.|.-.|+..+|++.|.+...- .=...|-.....|+-.|..++|+..+...-+. -|.. --+.-+.--|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999876533 13467999999999999999999998887763 3322 233334446888999999
Q ss_pred HHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 533 GQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENMP-----L---EP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
|.++|.+... +-| |+...+-+.-+....+.+.+|..+|+..- . .+ -..+|+.|..+|++.+..++|+
T Consensus 399 Ae~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999998863 444 46666777667778889999999988761 1 12 2456889999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 603 IAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
..+++++.+.|.+..+|.+++-+|...|+++.|...|.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-08 Score=106.62 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=160.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHh-----CC-CCch-HHHHHHHHHHHhcCCHHHHHHHHHhcc---------cCC
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRS-----GE-ASSL-SVSNALITMYSKAGNINAARRVFNLIH---------WRQ 477 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~p 477 (785)
|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++- ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555555554443 11 1222 222346678888888888888887652 112
Q ss_pred C-hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCC--CC
Q 003937 478 E-TVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHK--IK 547 (785)
Q Consensus 478 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~ 547 (785)
. ..+++.|...|.+.|++++|...+++..+ .|..+..+ -++.+...|...+.+++|..++....+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 24577788889999998888877776543 23333332 466677788999999999998887654332 22
Q ss_pred CC----chhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 003937 548 PT----PSHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI-- 611 (785)
Q Consensus 548 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 611 (785)
++ ..+++.|...|.+.|++++|++++++. +..+. ...++.|...|.+.++.+.|.++|++...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 457899999999999999999999887 11232 456788888999999999999999988763
Q ss_pred --CCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 612 --EPDN---SGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 612 --~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.|++ ..+|..|+..|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4578899999999999999999988875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.7e-08 Score=93.95 Aligned_cols=287 Identities=15% Similarity=0.087 Sum_probs=166.8
Q ss_pred CCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 003937 255 NGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQK 334 (785)
Q Consensus 255 ~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 334 (785)
.|++.+|.++..+- .+.+-.|- ..|.....+....|+.+.+-..+..+.+..-.++..+
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v------------------- 155 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV------------------- 155 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH-------------------
Confidence 46777777777665 55444442 2233333444444444444444444444322333333
Q ss_pred HHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 003937 335 IVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR---DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN 411 (785)
Q Consensus 335 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 411 (785)
.-+........|+.+.|+.-.++.. .+++.........|.+.|++.....++..|.+.|.--|
T Consensus 156 --------------~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 156 --------------ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred --------------HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 3444444444446666665555443 35677778888888888999999998888888876544
Q ss_pred HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHH
Q 003937 412 NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVAL 489 (785)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~ 489 (785)
+..- .+ ...+++.+++-....+..+.-...++..+. +.++..-.+++.-+
T Consensus 222 ~e~~-----------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 222 EEAA-----------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHH-----------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 3211 00 112223333333333333334445555542 22455556667777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHH
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (785)
.+.|+.++|.++..+..+.+..|.-. .+-.+.+.++...-.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHH
Confidence 77888888888888877776666622 22245566666666665555554344434 5566666777777777777
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 570 YNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 570 ~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.|+.. +..|+..+|+-+..++.+.|+.+.|.++.++.+.
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777655 5566777777777777777777777776666654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-07 Score=85.76 Aligned_cols=442 Identities=13% Similarity=0.052 Sum_probs=237.1
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhh
Q 003937 156 TALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFD 235 (785)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 235 (785)
...+|+..|..+++.-...+-.....+.--+..+|.+.|++++|..++.-+...+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------------------------- 87 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------------------------- 87 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------------------------
Confidence 3344555555555444433322222222233455566677777776666554322
Q ss_pred hcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 236 QMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 236 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
.++...|-.|.-.+.-.|.+.+|..+-.+. . .+...-..+++..-+.++-+.-..+|+.+...- .-
T Consensus 88 ---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----Ed 153 (557)
T KOG3785|consen 88 ---DAPAELGVNLACCKFYLGQYIEAKSIAEKA-P-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----ED 153 (557)
T ss_pred ---CCCcccchhHHHHHHHHHHHHHHHHHHhhC-C-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HH
Confidence 234444444444444455555555544433 1 111122223333344454444444444433221 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHH-HHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcC
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTL-LDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNG 391 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g 391 (785)
.-+|.++....-.+++|++++.+.....|+....|.. .-+|.+..-++-+.++++--.+ | ++++-|.......+.=
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 2344444444556778888888877777766665554 3456666666666666654332 2 3444454444443332
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHH-H-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAML-S-VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
+...|..-.+++..++-.. +-+..-+ . -+.-..+-+.|.+++--+.+. -|... -.|+-.|.+.+++.+|..+
T Consensus 234 ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred ccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHH
Confidence 2233333334443332111 1111000 0 001112335555555444432 22222 2456678999999999999
Q ss_pred HHhcccCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 470 FNLIHWRQETVSWTSMIVALAQHGL-------GEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 470 ~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
.+.+... .+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ --.++.+++.-...+++...+++.+.
T Consensus 308 ~Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 308 CKDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred HhhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888533 22222222222333343 334555555544555554443 34455556666677899999999887
Q ss_pred hcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhC-CCCc-
Q 003937 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-LE-PDVVAWGSLLSAC-RVHKNLDLGKIAAEKLLLIE-PDNS- 616 (785)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~- 616 (785)
. +=...|...+| +..+++..|...+|+++|-+.. .+ .|..+|.+++.-| ...|..+.|..++- ..+ |.+.
T Consensus 387 s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~f 461 (557)
T KOG3785|consen 387 S-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERF 461 (557)
T ss_pred H-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHH
Confidence 6 54455555554 7789999999999999998873 12 3677888777765 56677787776543 333 3222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
.....+++-|.+++.+=-|.+.|+.+......
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 23445678899999999999999988765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-07 Score=90.83 Aligned_cols=258 Identities=14% Similarity=0.062 Sum_probs=157.2
Q ss_pred HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003937 249 IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGG 328 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 328 (785)
+.+--+.|+.+.+-.++.+. .+..-.++...+.+.-......++.+.|+.-...+.+.+ +-+..+.......|.+.|+
T Consensus 125 A~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhcc
Confidence 33444445555555555444 222112222223333333344444455544444444443 2233444555666666666
Q ss_pred hHHHHHHHHHhCCCCC---------chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHH
Q 003937 329 VEIAQKIVEQSGISYL---------NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDA 396 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 396 (785)
+.....++.++.+... ...+|..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 6666666665544332 234666666666666666666667777764 3566666788888999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-cc
Q 003937 397 VELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HW 475 (785)
Q Consensus 397 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~ 475 (785)
.++..+..+.+..|+..+ +-.+.+.++.+.-.+..+.-.+. .+.++..+.+|...|.+.+.+.+|...|+.. +.
T Consensus 283 ~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 999999888877777322 23455666666655555554443 2333466778888888888888888888754 45
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003937 476 RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513 (785)
Q Consensus 476 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 513 (785)
+|+..+|+-+..+|.+.|+..+|.+.+++.+..-.+|+
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 67888888888888888888888888877664433343
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-06 Score=87.87 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHH-HH-HHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV-AL-AQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTH 526 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 526 (785)
+.|+.+|. +..+.+.++-...+..--...+.+++. ++ ++...+.+|.+++...-+. .|.. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 56666664 455677777766664412333444443 33 2333577888888877763 4544 345555666788
Q ss_pred cCCHHHHHHHHH--------HhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 003937 527 GGLVEQGQRYYN--------MMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--------PLEPD-VVAWGSLL 589 (785)
Q Consensus 527 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll 589 (785)
.|+++.|.+++. .+.+ .+. .+.+..+++.+|.+.+.-+-|..++.+. ...+. ..+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 4443 333 3455677889999888777666666554 22222 22344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
..-.++|+.++|...++++.+..|+|..+...++.+|+.. +.+.|..+=+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 4446789999999999999999999999999999999876 4566665533
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=90.12 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC-CCH------hHHHHHHHHHHHcCChhHHHH
Q 003937 327 GGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD-RDV------VAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 327 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~ 398 (785)
.+.++|.++|-+|...+| ...+-.+|.+.|-+.|..|.|+++-..+.+ ||. ...-.|..-|...|-+|.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455566666655554444 344555566666666666666666655543 221 122233444555666666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 399 LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS----LSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 399 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+|..+.+.|. .-......++..|....++++|..+-..+.+.+-.+. ...|..|...+....+++.|..++.+.-
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6666554321 1122334444455555555555555444444432222 1233445555555666777777776553
Q ss_pred c-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 475 W-RQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 475 ~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
. .|+ +..=-.+...+...|+++.|++.++...+. .|+- .+...|..+|.+.|+.+++..++..+.+ ..+..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~ 282 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGA 282 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCc
Confidence 2 222 222233445567777777777777777774 3443 3566677777777777777777776654 12333
Q ss_pred hhHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNF-IENMPLEPDVVAWGSLLSA 591 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~ 591 (785)
..-..|.+......-.+.|... .++..-+|+...+..|+..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3334444444333334444433 3334456666655555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-07 Score=88.51 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=148.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCC-----chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH---hHHHHHHHHHHH
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYL-----NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV---VAWTAMLVGYEQ 389 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~ 389 (785)
+|-+.|-+.|.+|.|+++-+.+..++. -..+...|..-|...|-+|.|+.+|..+.+... .....|+..|-+
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 344444445555555555444333321 123445566666667777777777777766333 344556777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNY----TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
..++++|+++-+++...+-.+..+ -|.-+........+++.|...+..+.+.. +..+..--.+.+.+...|+++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHH
Confidence 888888888888777766555443 23344444555667778888887777654 2223333456778888999999
Q ss_pred HHHHHHhcccC-CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 466 ARRVFNLIHWR-QET--VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 466 A~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|.+.++.+... |+. .....|..+|.+.|+.++.+..+.++.+....++. -..+-..-....-.+.|..+..+-.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 99999888655 332 24677888999999999999999998885333333 33333322333334555555544332
Q ss_pred cCCCCCCchhHHHHHHHH
Q 003937 543 VHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 543 ~~~~~p~~~~~~~li~~~ 560 (785)
-.|+...+..+++.-
T Consensus 311 ---r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 311 ---RKPTMRGFHRLMDYH 325 (389)
T ss_pred ---hCCcHHHHHHHHHhh
Confidence 268888888887754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-06 Score=87.28 Aligned_cols=528 Identities=16% Similarity=0.119 Sum_probs=310.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChh-hHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLC-SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNA 129 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a 129 (785)
....+.+|....+|++|..+-+....|... .-.+.+.++...|.-+.|-++ ...+.... +-|+.|.+.|.+..|
T Consensus 560 te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~l-aaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 560 TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDGL-AAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCccH-HHHHHHHHcCCchHH
Confidence 345677888888888888887766555332 344566666667766666554 22233322 346778888887777
Q ss_pred HHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC
Q 003937 130 IRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK 209 (785)
Q Consensus 130 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 209 (785)
.+....=. .+..|......+..++.+..-++.|-.+|+.+... ...+..|-+-.-+.+|.++-+-.-..
T Consensus 635 ~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~ 703 (1636)
T KOG3616|consen 635 ARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPE 703 (1636)
T ss_pred HHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcH
Confidence 66543211 12345555555555555555555565666554321 12233443433345555544322211
Q ss_pred Ccch-HHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003937 210 NVSS-WNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC 288 (785)
Q Consensus 210 ~~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~ 288 (785)
.+++ -...-..+.+.|+++.|..-|-+.. ..-..|.+-.....|.+|+.+++.+ +.... -..-|..+...|
T Consensus 704 evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildni-qdqk~--~s~yy~~iadhy 775 (1636)
T KOG3616|consen 704 EVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNI-QDQKT--ASGYYGEIADHY 775 (1636)
T ss_pred HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHh-hhhcc--ccccchHHHHHh
Confidence 1111 1122334455667777666654431 1122345566778899999998887 54432 234467778888
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRI 368 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 368 (785)
++.|+++.|+++|... -.++--|+||.+.|++++|.++-++...+.-....|-+-..-+-+.|++.+|.++
T Consensus 776 an~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred ccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 9999999998887642 2456789999999999999999988776665677888888889999999999999
Q ss_pred HHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchH
Q 003937 369 FDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLS 448 (785)
Q Consensus 369 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 448 (785)
+-.+..|+. .|..|-+.|..++.+++..+-...-+ ..|-..+..-+...|++..|..-|-..-.
T Consensus 847 yiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 847 YITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred eEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 999998875 47889999999999988776432111 23455566667778899888877655433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC----CChhHHHHHH------HHHHHcCChHHHHH-------------HHHHH
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHWR----QETVSWTSMI------VALAQHGLGEEAIQ-------------LFERM 505 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~~~~~~li------~~~~~~g~~~~A~~-------------~~~~m 505 (785)
+.+-++||...+.+++|.++-+.-... .-...|..-| ..+-++|..+.|+. +-+-.
T Consensus 911 -~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 467889999999999999987654322 0122343222 22334444444332 22222
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcC--CC-----CCCchhH---------HHHHHHHhhcCCHHHH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVH--KI-----KPTPSHF---------ASMVDLLGRAGLLQEA 569 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~-----~p~~~~~---------~~li~~~~~~g~~~~A 569 (785)
.+. -.|.. ...+..-+...|.+++|.+.+-+..+.. ++ .|+..-. .--+.++.+..++..|
T Consensus 990 ~k~-k~~~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~a 1066 (1636)
T KOG3616|consen 990 AKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAA 1066 (1636)
T ss_pred hhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHH
Confidence 221 11211 1122223456788888877665554411 11 0111000 0123344445555555
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 570 YNFIENMPLEPDV--VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 570 ~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
.++-+.- .||. .++.--..+....|++..|+.++-++ ..|+ ..++-|...+.|.+|.++-+.
T Consensus 1067 ervae~h--~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1067 ERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHHhh--ChhhhHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 5444332 1221 12333333344556666666554332 2342 346678888999999887554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-07 Score=85.70 Aligned_cols=452 Identities=13% Similarity=0.151 Sum_probs=248.2
Q ss_pred HHHHHccCChhHHHHHHhhCCCC------CccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccC
Q 003937 86 LSAYAKQGRLDLACEVFNLMPNR------DSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALG 159 (785)
Q Consensus 86 i~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 159 (785)
+.-+....++..|+.+++--..- +...| +.-++.+.|++++|+..+....+.. .|+......+.-+.--.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 44556677888888888755431 22233 3446677899999999998877644 455555555554445567
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcC
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNS-LLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMI 238 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 238 (785)
...+|+++... .|+....+. |.+.-.+.|+-++-..+...+.. ....-.+|.+.....-.+.+|.+++.++.
T Consensus 106 ~Y~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776544 344444444 44555667776666665555542 22344556666666677888888888775
Q ss_pred CC--CcccHHHH-HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhccc--chhhHHHHHHHHHHhcCCCCc
Q 003937 239 ER--DVVTWNSM-IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLE--KLKLGKQIHAYIIRTEFDATG 313 (785)
Q Consensus 239 ~~--~~~~~~~l-i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~ 313 (785)
.. +-...|.- .-.|.+...++-+.+++.--+++ -|| .|+..-+.+|..-. +-..+++-...+.+.+-..
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 43 33444443 34566677777777766665443 244 23444444443211 1111222122211111000
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCCh
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 393 (785)
++.+..+.+.-. + --..-+.|.+++-.+...=+.+--.++--|.+.+++
T Consensus 253 ---------------~~f~~~l~rHNL------V----------vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 253 ---------------YPFIEYLCRHNL------V----------VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred ---------------chhHHHHHHcCe------E----------EEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 111111111100 0 000233444444333332222333345557777788
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
.+|..+.+++.- ..|-......+..+ ++..-......+.-|.+.|+-+
T Consensus 302 qeA~~L~Kdl~P--ttP~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 302 QEAISLCKDLDP--TTPYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHHHHHHhhcCC--CChHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHh
Confidence 888777665521 22322222222211 1111111112234455555544
Q ss_pred ccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC
Q 003937 474 HWR----QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT 549 (785)
Q Consensus 474 ~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 549 (785)
... ..+..-.+|.+.+.-..++++.+..++....- +.-|.+.-..+..|.+..|.+.+|.++|-.+.. ..++.+
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhh
Confidence 321 12334556666666667777777777776664 233333333467788888999999998876653 233333
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLS-ACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
..-...|...|.+++..+-|.+++-++.-+.+..+...+|. -|.+.+.+=-|-++|+.+..++| ++..|
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 33334556788899999999999988864445665555554 48899998889999999888888 55543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-05 Score=84.37 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=55.2
Q ss_pred cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003937 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALIS 321 (785)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (785)
...|.---.-+-..|+.+.|+.+|... +. |-++....|-.|+.++|.++-++ ..|....--|.+
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHH
Confidence 333433444444568888888888776 32 44556666667888887777654 345566677888
Q ss_pred HHHhcCChHHHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~ 338 (785)
+|-..|++.+|..+|.+
T Consensus 976 ~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 88888998888888876
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=91.94 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=55.3
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCc-ccHHHHHHHHhhCCCchHHHHHHHHhhhcCC
Q 003937 195 DEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDV-VTWNSMIAGYSQNGYDFEALGMFANMLKDSS 273 (785)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g 273 (785)
++.+|..+|-+-. .-..-|.+|-...++++|..+-+..-.|-. ..-.+.+.++...|+-++|-++-.. .|
T Consensus 546 kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dg 616 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DG 616 (1636)
T ss_pred hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cC
Confidence 5667777664322 112234455555556666555544322211 1122333444445555554332110 11
Q ss_pred CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhC
Q 003937 274 LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSG 340 (785)
Q Consensus 274 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 340 (785)
.+ .+.|..|.+.|.+-.|.... .....+..|..+...+..++.+..-+++|-.+|+++.
T Consensus 617 -----d~-laaiqlyika~~p~~a~~~a--~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 617 -----DG-LAAIQLYIKAGKPAKAARAA--LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred -----cc-HHHHHHHHHcCCchHHHHhh--cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11 23344455555544433221 1112223344444455555555555555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-05 Score=82.74 Aligned_cols=572 Identities=13% Similarity=0.112 Sum_probs=305.3
Q ss_pred CcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCC---------------CCChhhHHHHHHHHHcc
Q 003937 28 NPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMP---------------VKTLCSWNTILSAYAKQ 92 (785)
Q Consensus 28 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~li~~~~~~ 92 (785)
.++...+....|...++.-+..+.-.+..-|...-..+...++|+... ..|....-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 344555555555555555555555555555555555566666777653 13444555678888888
Q ss_pred CChhHHHHHHhhCC---------------C----C------------CccHH------HHHHHHHHhCCChhHHHHHHHH
Q 003937 93 GRLDLACEVFNLMP---------------N----R------------DSVSW------TTIIVTYNEIGRFKNAIRMFVE 135 (785)
Q Consensus 93 g~~~~A~~~f~~m~---------------~----~------------~~~~~------~~li~~~~~~g~~~~a~~~~~~ 135 (785)
|.+.+..++-++-. - | |.+.| ...|..|.+.=++...-.+...
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 88777766654321 0 1 11111 1234444444333333333322
Q ss_pred hHHCCCCCChhhH-------------HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003937 136 MVQDQVLPTQFTV-------------TSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAV 202 (785)
Q Consensus 136 m~~~g~~p~~~t~-------------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (785)
++.-. -+.... .-+..-+-+.+++..-...++..+..| ..|+.++|+|...|...++-.+- .
T Consensus 818 LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 818 LLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--h
Confidence 22211 111111 123333456667777778888888888 56899999999999877654331 2
Q ss_pred HhcCC------------CCCc-----------------------chHHHHHHHHHhcCChHHHHHHh-----------hh
Q 003937 203 FDGMR------------LKNV-----------------------SSWNVVVSLHIHSGRLDLARAQF-----------DQ 236 (785)
Q Consensus 203 ~~~m~------------~~~~-----------------------~~~~~li~~~~~~g~~~~A~~l~-----------~~ 236 (785)
+++=+ .+|+ ..|-...+-+.+..+.+-=.+++ ++
T Consensus 893 LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDq 972 (1666)
T KOG0985|consen 893 LKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQ 972 (1666)
T ss_pred cccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHH
Confidence 22111 1111 01222223333333333222222 11
Q ss_pred c------CCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCC
Q 003937 237 M------IERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFD 310 (785)
Q Consensus 237 ~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 310 (785)
. ...|+..-+.-+.++...+-+.+-++++++.+.+...-.....+-.++-.-+-.-+.....+ .+.+..
T Consensus 973 Vv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~---YI~rLd-- 1047 (1666)
T KOG0985|consen 973 VVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVME---YINRLD-- 1047 (1666)
T ss_pred HHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHH---HHHHhc--
Confidence 1 11245555666778888888888888888874333222222222222222221122222222 222211
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHc
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQN 390 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 390 (785)
..-.-.+.......+-+++|..+|++... +..+.+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.
T Consensus 1048 --nyDa~~ia~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1048 --NYDAPDIAEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQG 1117 (1666)
T ss_pred --cCCchhHHHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhc
Confidence 11111223334455556666666665322 1222222222 123555555555555443 3467777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
|...+|++-|-+. -|...|.-++..+.+.|.++.-...+..+.+..-+|.+. +.||-+|++.+++.+-++.+
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 7777777666432 345567777777777777777777776666665555544 46777777777766655544
Q ss_pred Hhc--------ccC--------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 471 NLI--------HWR--------------QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 471 ~~~--------~~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
..- ..+ .++..|..|...+...|++..|...-++. -+..||.-+-.+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 211 000 14445666777777777777776554432 23357888888888776
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
.+.-|. |.. ..+.....-..-|+..|...|.++|-..+++.. +++. ....|+-|.-.|.+- ..++..+.++
T Consensus 1264 EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1264 EFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 655442 321 233334445677889999999999999888876 5443 344555555445544 3444444444
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
-.... ...--++.++-.+-.|.|..-++..-.+.
T Consensus 1337 LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1337 LFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44331 11224677888888888887777665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-06 Score=85.28 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=122.1
Q ss_pred HHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-ccCCH
Q 003937 455 TMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL-TACT-HGGLV 530 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~ 530 (785)
..+...|++++|.-.|+... .+-+..+|.-|+..|...|+..+|..+-+...+. +.-+..+...+. ..|. ..-.-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 34556788899988888654 2237889999999999999999999888776653 334445555442 3333 23335
Q ss_pred HHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 531 EQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
++|..++++-.+ +.|+ ....+.+..++.+.|..+++..++++. ...||....+.|...++..+.+++|...|..+
T Consensus 421 EKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888887653 5666 455677788889999999999999887 56789999999999999999999999999999
Q ss_pred HhhCCCCchh
Q 003937 609 LLIEPDNSGA 618 (785)
Q Consensus 609 ~~~~p~~~~~ 618 (785)
+.++|+|..+
T Consensus 498 Lr~dP~~~~s 507 (564)
T KOG1174|consen 498 LRQDPKSKRT 507 (564)
T ss_pred HhcCccchHH
Confidence 9999976543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-08 Score=106.58 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 393 NKDAVELFRSMVREGPKPNNYT-LSAMLSVSS---------SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
.++|+.+|++..+. .|+... +..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45777777777653 454432 222222221 2344677888887777664 3456677778888899999
Q ss_pred HHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHH
Q 003937 463 INAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNM 539 (785)
Q Consensus 463 ~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 539 (785)
+++|...|++.. ..| +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999998864 234 466788888999999999999999999998 567653 333444456678999999999988
Q ss_pred hhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 540 MKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 540 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+.+ ...|+ ...+..+...|...|+.++|...+.+. +..|+.. .++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765 22343 445677888899999999999999887 4455543 4555555566666 478887887766322222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+..+...|+-.|+-+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2233377778888888888877 7776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-07 Score=96.77 Aligned_cols=213 Identities=18% Similarity=0.127 Sum_probs=151.5
Q ss_pred CchHHHHHHHHHHHHhC-CCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHH
Q 003937 426 ASLDHGKQIHASALRSG-EASS--LSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
+..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++... .| +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555566666432 2222 45577788889999999999999987642 23 57889999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 003937 501 LFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--P 577 (785)
Q Consensus 501 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 577 (785)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 67865 5788888889999999999999998875 3454432222223345678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 578 LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLL-------LIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
..|+...| .+ .....|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...+++..+..+
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23333222 12 22334554443 2344443 45666778999999999999999999999999886543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-07 Score=91.97 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=109.0
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
...+..+...|...|++++|...|++..... |+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc----------------------------------HHHHHHHHHH
Confidence 4566777777788888888888887776532 321 2223344445
Q ss_pred HHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 533 (785)
|...|++++|.+.|++... +.+...+..+...+...|++++|++.|++.......|. ...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554321 11334455555556666666666666666655322222 23444455556666666666
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...+.+..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+...
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666665541 1222445555666666666666666666655 2222 3444555555566666777766666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-05 Score=82.09 Aligned_cols=460 Identities=14% Similarity=0.112 Sum_probs=223.9
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhH
Q 003937 3 TPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSW 82 (785)
Q Consensus 3 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 82 (785)
...++...+-+..|.. +......+++++|.+.-..++..+ +-+...+.+-+-++.+.+.+++|..+.+.-..-.....
T Consensus 3 ~~~~~~~~~~~~l~t~-ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~ 80 (652)
T KOG2376|consen 3 KEKSGGSDNLEALLTD-LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS 80 (652)
T ss_pred CcccCCcccHHHHHHH-HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch
Confidence 3344433333334443 445567788999999988888777 55677777778888899999999877665442111111
Q ss_pred HHHHHHHH--ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccC
Q 003937 83 NTILSAYA--KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALG 159 (785)
Q Consensus 83 ~~li~~~~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 159 (785)
-.+=.+|| +.+..++|...++....-+..+-..-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-.
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--- 157 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---
Confidence 11355565 57778888888775555454455555566677788888888888776654321 1111111111110
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHH---HHHHHhCCChHHHHHHHhcCC--------CCCcchHHHHHHHHHhcCChH
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNSL---LNMYAKVGDEMMAKAVFDGMR--------LKNVSSWNVVVSLHIHSGRLD 228 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~ 228 (785)
+... ..+......| ..+|..+ ...+...|++..|+++++... ..|.. -|
T Consensus 158 ----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--------------eE 217 (652)
T KOG2376|consen 158 ----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--------------EE 217 (652)
T ss_pred ----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------hh
Confidence 0001 0111222222 1122222 223445566666666665441 00000 00
Q ss_pred HHHHHhhhcCCCCc-ccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChh---hHHHHHHHHhcccchhhH--HHHHH
Q 003937 229 LARAQFDQMIERDV-VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF---TLASTLSACANLEKLKLG--KQIHA 302 (785)
Q Consensus 229 ~A~~l~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~---t~~~ll~~~~~~~~~~~a--~~~~~ 302 (785)
+ ++... ..--.|..++...|+.++|..++...++.. .+|.. ++..-|.+.....++-.+ ...++
T Consensus 218 e--------ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~ 287 (652)
T KOG2376|consen 218 E--------IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKK 287 (652)
T ss_pred h--------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHH
Confidence 0 00000 012234456667788888888887774332 23332 222222232222222111 00000
Q ss_pred HHH-----------HhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 303 YII-----------RTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDS 371 (785)
Q Consensus 303 ~~~-----------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 371 (785)
... ...-.....--+.++.+|. +..+.++++-..
T Consensus 288 ~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-----------------------------------nk~~q~r~~~a~ 332 (652)
T KOG2376|consen 288 SQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-----------------------------------NKMDQVRELSAS 332 (652)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------hhHHHHHHHHHh
Confidence 000 0000000001122222222 234455555555
Q ss_pred cCCCC-HhHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHH--------HH
Q 003937 372 LRDRD-VVAWTAMLVGYE--QNGLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHA--------SA 438 (785)
Q Consensus 372 ~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~ 438 (785)
.+... ...+.+++.... +...+..|.+++...-+. .|.. ...-..+.-....|+++.|.+++. .+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 54422 222333333221 122345555555554432 2322 222333344456666666666666 33
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-----cCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003937 439 LRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-----WRQETV----SWTSMIVALAQHGLGEEAIQLFERMLELG 509 (785)
Q Consensus 439 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g 509 (785)
.+.+..| .+..+++.+|.+.++-+.|..++++.. ..+... +|.-....-.++|+.++|..+++++.+..
T Consensus 411 ~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3333333 344567778888887777777776542 111222 23333334456788888888888887732
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYN 538 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 538 (785)
++|..+...++.+|+.. +++.|..+-.
T Consensus 489 -~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 489 -PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred -CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44556777777777665 3566655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-06 Score=89.00 Aligned_cols=426 Identities=13% Similarity=0.032 Sum_probs=263.7
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHhhhcCC----CCcccHHH
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK---NVSSWNVVVSLHIHSGRLDLARAQFDQMIE----RDVVTWNS 247 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~ 247 (785)
.+..|..+|..|.-+...+|++..+-+.|++...- ....|+.+...|.-.|.-..|..+++.-.. |+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 46678999999999999999999999999987632 456899999999999999999999987633 32233333
Q ss_pred HHH-HHh-hCCCchHHHHHHHHhhhc-----CCCCCChhhHHHHHHHHh--ccc-------chhhHHHHHHHHHHhcC-C
Q 003937 248 MIA-GYS-QNGYDFEALGMFANMLKD-----SSLKPDKFTLASTLSACA--NLE-------KLKLGKQIHAYIIRTEF-D 310 (785)
Q Consensus 248 li~-~~~-~~g~~~~A~~l~~~ml~~-----~g~~p~~~t~~~ll~~~~--~~~-------~~~~a~~~~~~~~~~g~-~ 310 (785)
|+. .|. +-+..+++++.-.+.+.. ..+.|-...+..+-.+.. ... ...++.+.++..++.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 332 222 346677777776666331 123333333222222221 111 12345556666665553 3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHH
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGIS--YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA---MLV 385 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~ 385 (785)
|++..| +.--|+..++++.|.+...+...- ..+...|..+.-.+.-.+++.+|+.+.+...+.-..-++. -+.
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 433333 334578889999999999986554 3378999999999999999999999998765422221221 122
Q ss_pred HHHHcCChhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--
Q 003937 386 GYEQNGLNKDAVELFRSMVRE--GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG-- 461 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-- 461 (785)
.-..-++.++|+.....++.- ...|-..+. . .|....-..-...... ...-...++..+.......+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhh
Confidence 233467788888777776542 001101110 0 0100000000000000 00111122222221111111
Q ss_pred -CHHHHHHHHHhcccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 003937 462 -NINAARRVFNLIHWRQE------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 462 -~~~~A~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 533 (785)
..+..+..+...+. |+ ...|......+.+.+..++|..-+.+... +.|-. ..|......+...|.+++|
T Consensus 627 ~~se~~Lp~s~~~~~-~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPG-PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccccCcccccCC-CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 11111111111111 12 22366667778888899999888777776 45544 3566666677888999999
Q ss_pred HHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYN--FIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .++| +...|-.|...+.+.|+.+.|-..|.-+
T Consensus 704 ~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998765 35666 6678889999999997766666 77776 6777 4779999999999999999999999999
Q ss_pred HhhCCCCch
Q 003937 609 LLIEPDNSG 617 (785)
Q Consensus 609 ~~~~p~~~~ 617 (785)
.++++.+|+
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999987764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-07 Score=99.21 Aligned_cols=243 Identities=18% Similarity=0.198 Sum_probs=157.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh-HHHHHHHHHHHcCC
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVV-AWTAMLVGYEQNGL 392 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~ 392 (785)
.+..-|..+|...|+++.|..+++..... ..+.+- +..+.+. .-+.+...|...++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~----------------------l~k~~G-~~hl~va~~l~~~a~~y~~~~k 256 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRI----------------------LEKTSG-LKHLVVASMLNILALVYRSLGK 256 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------------HHHccC-ccCHHHHHHHHHHHHHHHHhcc
Confidence 34455777777788777777766652111 111111 1112222 22345667788888
Q ss_pred hhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 393 NKDAVELFRSMVRE---GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 393 ~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
+++|..+|+++... ..-++... -..+++.|...|.+.|++++|...
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHH-------------------------------HHHHHHHHHHHHhccCChHHHHHH
Confidence 88888888887642 11112111 123335556667777777776666
Q ss_pred HHhcc---------cCCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCCHHH
Q 003937 470 FNLIH---------WRQETVS-WTSMIVALAQHGLGEEAIQLFERMLEL---GIKPDH----ITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 470 ~~~~~---------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~ 532 (785)
++... ..|++.+ ++.++..+...+++++|..+++...+. -+.++. -+++.+...+.+.|++++
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 65431 1123333 566677788888999999888876542 133333 378889999999999999
Q ss_pred HHHHHHHhhhcC----C-CCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCC
Q 003937 533 GQRYYNMMKNVH----K-IKPT-PSHFASMVDLLGRAGLLQEAYNFIENM--------PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 533 a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
|.++|+++.+.. + ..+. ...++.|...|.+.+..++|.++|.+. +-.|+ ..+|..|...|...|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 999998876532 1 1222 445777888889999999888888776 33455 4589999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003937 598 LDLGKIAAEKLLL 610 (785)
Q Consensus 598 ~~~a~~~~~~~~~ 610 (785)
++.|+++.+++..
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-05 Score=80.33 Aligned_cols=541 Identities=14% Similarity=0.107 Sum_probs=279.9
Q ss_pred HhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC-----------CCh-hhHHHHHHHH
Q 003937 22 SNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV-----------KTL-CSWNTILSAY 89 (785)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~-~~~~~li~~~ 89 (785)
-|..-|+.+.|..-.+.+++. .+|..+..+|.+..+++-|+-.+..|.+ .|. ..-.......
T Consensus 737 fyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 455667888877766666553 4688888888888888888877777742 111 2212222223
Q ss_pred HccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
...|.+++|..++.+-.. |..|=..|-..|.+.+|+++-+.=-+-.+ ..||..-.+-+-..+|.+.|.+.++
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 456777777777766543 44455556666777777776654322111 2244444444445556666665554
Q ss_pred HH----------HHhC---------CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003937 170 FV----------VKTG---------LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLA 230 (785)
Q Consensus 170 ~~----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 230 (785)
.. ++.. -..|...|.---..+-..|++|.|+.++.... .|-++++..|-.|+.++|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHH
Confidence 32 1111 01233334333344445688888888887665 577888888999999999
Q ss_pred HHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCC
Q 003937 231 RAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFD 310 (785)
Q Consensus 231 ~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 310 (785)
.++-++ ..|....-.+.+-|-..|++.+|+..|.+. .+|...|..|-..+--+ ++.....-++-
T Consensus 958 a~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA----------qafsnAIRlcKEnd~~d---~L~nlal~s~~- 1021 (1416)
T KOG3617|consen 958 ARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA----------QAFSNAIRLCKENDMKD---RLANLALMSGG- 1021 (1416)
T ss_pred HHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHhcCHHH---HHHHHHhhcCc-
Confidence 988876 456677778889999999999999999887 35777777665443221 12222211110
Q ss_pred CCcchHHHHHHHHHhcC-ChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC--------------CC
Q 003937 311 ATGPVGNALISCYAKVG-GVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR--------------DR 375 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------------~~ 375 (785)
.| .......|-.+| ..+.|..+ |-+.|.+.+|+++-=+-. ..
T Consensus 1022 ~d---~v~aArYyEe~g~~~~~AVmL--------------------YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1022 SD---LVSAARYYEELGGYAHKAVML--------------------YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred hh---HHHHHHHHHHcchhhhHHHHH--------------------HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 00 011122222232 22333222 333334444433321111 13
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCC---chHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS--GEAS---SLSVS 450 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~ 450 (785)
|+...+--..-|+.+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-. +.++ -..+.
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 555555555666667777777776655432 333333333222 11122222222111 1111 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHH---------HH----HHHHHHCCCCCCHHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAI---------QL----FERMLELGIKPDHITY 517 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~---------~~----~~~m~~~g~~p~~~t~ 517 (785)
..+.+.+.++|.+..|-+-|.+...+ -.-+.++.+.|+.++.. ++ -+-++....+.|+.+.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~m 1222 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTM 1222 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHH
Confidence 55666677777777777777666554 22344455555543310 00 0112222345555555
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHH--------
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVV-AWGSL-------- 588 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l-------- 588 (785)
..++.-|.+...++.--.+++.... ..++.|..+-.+ .|-+++|.+.+.+...+.+.. .++.|
T Consensus 1223 K~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1223 KDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVK 1294 (1416)
T ss_pred hhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 5555555555444444444433221 112222221111 244555555555553222211 22222
Q ss_pred --HHHHHhc-CCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 --LSACRVH-KNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 --l~~~~~~-g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...... .+..+.+.-.+.+++ +|.. ...|..|+..|....+|..|-+.++.|..+
T Consensus 1295 ~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 2222111 133333333333333 3332 235778888899999999999999988765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-06 Score=85.80 Aligned_cols=435 Identities=12% Similarity=0.107 Sum_probs=228.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|-.++..| ..+++...+.+.+..+. +..-...|....--.+...|+.++|....+..++.. .-+.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344555555 45677777777777665 222223344333333456788888888877777654 334566777766666
Q ss_pred hCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHhhhcC---CCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 192 KVGDEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQFDQMI---ERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
...++++|.+.|.... ..|...|..+.-.-++.++++-....-.+.. ......|..+..++.-.|+...|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999987654 3456677777666677777776655554442 345678999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHH------HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 266 ANMLKDSSLKPDKFTLASTLSA------CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
++..+...-.|+...+.....- ....|.++.+.+.+...... +......--.-.+.+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 9884433345666555433322 23455555555444332211 1222233344566788888888888888888
Q ss_pred CCCCCchHhHHHHH-HHHHhcCCHHHHH-HHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh
Q 003937 340 GISYLNVIAFTTLL-DGYIKIGDIGPAR-RIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT 414 (785)
Q Consensus 340 ~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 414 (785)
..+.||...|.... .++.+-.+.-++. .+|....+. ....-..=++......-.+..-.++..+.+.|+.+-...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 88888666555443 4443333444444 555554431 000000000000111122333445666677776654444
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccCCChhHHHH--HHHHHHH
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWRQETVSWTS--MIVALAQ 491 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~p~~~~~~~--li~~~~~ 491 (785)
+.++.. .....+ +. ..++..|...=.-.......+.- .++|....|+. ++..|-.
T Consensus 326 l~SLyk---~p~k~~----~l---------------e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 326 LRSLYK---DPEKVA----FL---------------EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred hHHHHh---chhHhH----HH---------------HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 333321 111111 11 11111221110000000000000 12344444443 3344555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHH
Q 003937 492 HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (785)
.|+++.|+.+++.... -.|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-+--+.-..++.+.++|.
T Consensus 384 ~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred cccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHH
Confidence 5666666666665555 345543 444444555566666666666655543 12234333333344445556666665
Q ss_pred HHHHhC
Q 003937 571 NFIENM 576 (785)
Q Consensus 571 ~~~~~~ 576 (785)
++....
T Consensus 460 ~~~skF 465 (700)
T KOG1156|consen 460 EVLSKF 465 (700)
T ss_pred HHHHHh
Confidence 554433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-08 Score=92.23 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 350 TTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
+.+..+|.+.|.+.+|.+.|+.-.. +-+.+|-.+-..|.+..++..|+.+|.+-++ ..|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh------------
Confidence 4444555555555555555544332 3344444444555555555555555544433 23444443
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 428 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
..-....+-..++.++|.++++..... .++.+..++..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 222333444445666666666655321 24555555666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPD--VV 583 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~ 583 (785)
++.|+. +...|+.+.-+|...+++|-+..-|..... .. -+|+ ..
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-ta--------------------------------t~~~~aaD 396 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TA--------------------------------TQPGQAAD 396 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hc--------------------------------cCcchhhh
Confidence 776643 344555666666666666666655554432 11 1222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|-.|.......|++..|.+.|+-++.-+|++..+++.|+-.-.+.|++++|..+++..++.
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 67777666777899999999999999999999999999999999999999999999988764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-07 Score=103.86 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=160.4
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------hcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCC
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYS---------KAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGL 494 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~ 494 (785)
+++++|...+...++.. +.+...+..+...|. ..+++++|...+++... .| +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888888887653 223445555555443 23458899999987643 23 67788888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 572 (785)
+++|+..|++..+ +.|+. ..+..+..++...|++++|...+++..+ +.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4777788899999999999999999876 34553 2333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 573 IENMP--LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 573 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+++.- ..|+ ...+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98872 2354 4456667777889999999999999998888877777888888888888 588887777754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=86.12 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDL 559 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 559 (785)
...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++..+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 45566789999999999999999998 577764 888888899999999999999998875 3444 6678888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 560 LGRAGLLQEAYNFIENMPLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998833443 457888887788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003937 636 ANIRKSMKYVGV 647 (785)
Q Consensus 636 ~~~~~~m~~~g~ 647 (785)
..+++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998876654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-05 Score=78.73 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=137.2
Q ss_pred hcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHH
Q 003937 459 KAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
...+++.|+.+-++...- .++..+-.-...+.+.|++++|.-.|+..+. +.|- ..+|..|+.+|...|...+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 345677777766654322 1444554445678889999999999999988 6764 4699999999999999999987
Q ss_pred HHHHhhhcCCCCCCchhHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 536 YYNMMKNVHKIKPTPSHFASMV-DLLGR-AGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
.-+...+ -++.+..+.+-+. +.+.- .-.-++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+..
T Consensus 390 ~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 7666554 2333344443331 22222 22347899999887 67887 456677778899999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 612 EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.| |....+.|++.+.....+.+|...|....+.+
T Consensus 468 ~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 468 FP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99 77899999999999999999999999886543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-05 Score=87.90 Aligned_cols=542 Identities=14% Similarity=0.075 Sum_probs=303.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHHh
Q 003937 81 SWNTILSAYAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQ-VLPTQFTVTSVLASCT 156 (785)
Q Consensus 81 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 156 (785)
.|..|...|+..-+...|.+.|+...+ .|..+|..+...|++..+++.|..+.-.--+.. ...-...|...--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 677788888877788888888887765 356678888899999999998888833322211 0001112222222344
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChHHHHHH
Q 003937 157 ALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWN---VVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l 233 (785)
+.++...+..-++...+.. +-|...|..|..+|..+|++..|.++|++...-++.++- -..-..+..|.+.+|...
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5666777777777777665 557778888999999999999999999877644433222 233445667888888888
Q ss_pred hhhcCCC----------CcccHHHHHHHHhhCCCchHHHHHHHHhhh------cCCCCCChhhHHHHHHHHhcccchhhH
Q 003937 234 FDQMIER----------DVVTWNSMIAGYSQNGYDFEALGMFANMLK------DSSLKPDKFTLASTLSACANLEKLKLG 297 (785)
Q Consensus 234 ~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~ml~------~~g~~p~~~t~~~ll~~~~~~~~~~~a 297 (785)
+..+... -..++-.+...+.-.|-..+|.+.|++-+. .....-+...+..+-.+|
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac--------- 723 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC--------- 723 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH---------
Confidence 8776321 112232333333334444444444444311 011111222222111111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCh---H---HHHHHHHHhCCCCCchHhHHHHHHHHHh--------c
Q 003937 298 KQIHAYIIRTEFDATGPVGNALISCYAK----VGGV---E---IAQKIVEQSGISYLNVIAFTTLLDGYIK--------I 359 (785)
Q Consensus 298 ~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~---~---~A~~~~~~~~~~~~~~~~~~~li~~~~~--------~ 359 (785)
.++... .|+ .+...++..+.+ .+.. | -+.+.+-.-...-.+..+|..++..|.+ .
T Consensus 724 -~~f~q~-----e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 724 -YIFSQE-----EPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred -HHHHHh-----ccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 111111 122 111222222221 1111 1 0000000000000124556666555544 1
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHH
Q 003937 360 GDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHA 436 (785)
Q Consensus 360 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 436 (785)
.+...|...+....+ .+...||.|--. ...|++.-|...|-+-... .+.+..+|..+--.|....+++.|.+.+.
T Consensus 797 ~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHH
Confidence 233466777765543 677888887655 6667787777777665543 23345667777777788889999999988
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-----c--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 003937 437 SALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-----H--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL- 508 (785)
Q Consensus 437 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 508 (785)
...... +.+...+--....-...|+.-++..+|..- . .-|+..-|-.-..-..++|+.++-+...+.+...
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 776542 223333322222234567777888887652 1 1145555655555566777766655444333221
Q ss_pred -------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH----HHHHhhcCCHHHHHHHHHhC
Q 003937 509 -------GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM----VDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 509 -------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~~ 576 (785)
+-.|+ ...|........+.+..+.|.+...+...-....-+...|+.. ...+...|.++.|..-+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 12344 4688888888888888887777666554322223445555533 34556677888777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 577 PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 577 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+...|..+-.+-+.. .-.|+++.+...|++++.+.-++.. ....++.....++.-+.|...+-+..
T Consensus 1034 ~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1034 WMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred chhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 545555444444444 4467899999999999887543332 33334445556677777777655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-06 Score=86.43 Aligned_cols=218 Identities=13% Similarity=-0.001 Sum_probs=141.6
Q ss_pred ChhHHHHHHHHHHHcC-CCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 392 LNKDAVELFRSMVREG-PKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
..+.++.-+.+++... ..|+. ..|...-..+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 12221 223344445556666666666666666543 3356777888899999999999999
Q ss_pred HHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 469 VFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 469 ~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
.|++... .| +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.+... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 9987743 23 467788888889999999999999999988 567654222222334566789999999976553 23
Q ss_pred CCCchhHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 547 KPTPSHFASMVDLLGRAGLL--QEAYNFIENM-P----LEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.|+... ..++..+ .|++ +++.+.+.+. . ..| ....|..+...+.+.|+.++|...|+++++.+|.+..
T Consensus 196 ~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 343322 2333333 4444 3333333321 1 122 2457889999999999999999999999999975443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-05 Score=81.23 Aligned_cols=570 Identities=15% Similarity=0.041 Sum_probs=300.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCc-----cHHHHHHHH
Q 003937 48 VFLKNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDS-----VSWTTIIVT 119 (785)
Q Consensus 48 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~~ 119 (785)
...|..|...|...-+...|++.|+...+ .+..++......|++..+++.|..+.-...+.+. ..|-..--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45688888888888888899999998765 4667888999999999999998887433333221 123333345
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMM 198 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 198 (785)
|.+.++..+|+.-|+...+ +.| |...|..+..+|...|+...|.++|..+.... +.+.+..--..-+-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHH
Confidence 5667788888888877765 334 55577888888888888888888887776653 2222222222233455677777
Q ss_pred HHHHHhcCCCC---------C-cchHHHHHHHHHhcCChHHHHHHhhhcCCC-----------CcccHHHHHHHHhhCCC
Q 003937 199 AKAVFDGMRLK---------N-VSSWNVVVSLHIHSGRLDLARAQFDQMIER-----------DVVTWNSMIAGYSQNGY 257 (785)
Q Consensus 199 A~~~~~~m~~~---------~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----------~~~~~~~li~~~~~~g~ 257 (785)
|...+..+... + ..++-.+...+.-.|-...|.+.|++-++. +...|-.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a--------- 719 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA--------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------
Confidence 77777665411 1 223333444444444444555555443221 22222222
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccch---hh-HHHHHHHHHHhcCCCCcchHHHHHHHHHh----cC--
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKL---KL-GKQIHAYIIRTEFDATGPVGNALISCYAK----VG-- 327 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~---~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g-- 327 (785)
..|..+|... . .. .|+......+..-.-+.+.. +. ....-.......+..+...|..|..-|.+ +|
T Consensus 720 -sdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 -SDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred -hHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 2344445444 2 11 33333333333222222222 10 00000111111122234444444433333 22
Q ss_pred --ChHHHHHHHHHhCC-CCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 003937 328 --GVEIAQKIVEQSGI-SYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR---DRDVVAWTAMLVGYEQNGLNKDAVELFR 401 (785)
Q Consensus 328 --~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 401 (785)
+...|...+.+... ...+...||.|.-. ...|++.-|...|-.-. ..+..+|..+...+.++.+++-|...|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 22345566665332 33456777777655 55577777777765443 2466677777777788888888888887
Q ss_pred HHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHH----hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 003937 402 SMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALR----SGEASSLSVSNALITMYSKAGNINAARRVFNLIH-- 474 (785)
Q Consensus 402 ~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 474 (785)
..+. +.|+ ...+..........|+.-+...++..-.. .|--++...+-.-.......|+.++-...-+.+.
T Consensus 875 ~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 875 SVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred hhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 7765 3343 33333322223344555555555544211 1223333333333333344555544433333321
Q ss_pred ---------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHhhccCCHHHHHHHHHH
Q 003937 475 ---------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGV----LTACTHGGLVEQGQRYYNM 539 (785)
Q Consensus 475 ---------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~ 539 (785)
..| +...|.+.....-..+.++.|.++..+...- ..+-|..+|+.+ ...+...|.++.|..-+..
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~ 1032 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK 1032 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc
Confidence 112 4556777666666667777777776664321 023344455532 2234445555555443322
Q ss_pred hhhcCCCCCCchhHHHHHHHH--hhcCCHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 540 MKNVHKIKPTPSHFASMVDLL--GRAGLLQEAYNFIENM----PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 540 m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~----~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
.|-..--..+-..+ .-.|+++++.+.|++. .-+.|.+ ....++......+.-+.|...+-+...+.
T Consensus 1033 -------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1033 -------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred -------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 22111111111111 2357888888888887 2233433 33444444566677777888777777777
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|.+......|.-++.-..+-..-..+.++..
T Consensus 1106 ~~~~~sll~L~A~~ild~da~~ssaileel~ 1136 (1238)
T KOG1127|consen 1106 KVQASSLLPLPAVYILDADAHGSSAILEELE 1136 (1238)
T ss_pred ccchhhHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 7677766666666554444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-06 Score=83.24 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=163.1
Q ss_pred hcccchhhHHHHHHHHHHhcC-CC--------CcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 003937 289 ANLEKLKLGKQIHAYIIRTEF-DA--------TGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~-~~--------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 359 (785)
-..+++..+...+....+... .| |-.--+.+...|.+.|.+.+|.+.|+......|-+.||..|-.+|.+.
T Consensus 190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh
Confidence 345666666555444443322 11 222337788999999999999999999998888999999999999999
Q ss_pred CCHHHHHHHHHhcCC--CCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHH
Q 003937 360 GDIGPARRIFDSLRD--RDVVAW-TAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIH 435 (785)
Q Consensus 360 g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 435 (785)
.+...|+.+|.+-.+ |..++| .-+...+-..++.++|.++|+...+. .|+ ......+...+.-.++.+.|...+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHH
Confidence 999999999998876 444444 44566777788999999999988764 332 223333333333334444444444
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 436 ASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 436 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
..+...| .. +...|+.+.-+|.-.++++-++.-|++.+..--.|+..
T Consensus 348 RRiLqmG--------------------------------~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 348 RRILQMG--------------------------------AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHHHHhc--------------------------------CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 4444333 22 55566666666666667777777777766654445442
Q ss_pred --HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 516 --TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 516 --t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
.|-.+.......|++..|.+.|+.... .-....+.++.|.-+-.+.|++++|..++...
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 455565566667777777777765543 22233455666666666677777777666665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-05 Score=79.53 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=153.3
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003937 245 WNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYA 324 (785)
Q Consensus 245 ~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 324 (785)
+..++..| ..+++...+++.+..+++.+-.++....-.+. +...|+.+.|.......++..+ .+.+.|..+.-.+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~--L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLT--LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccch--hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 33344433 45677788888888766555455544333222 3456777777766665555332 23355666776777
Q ss_pred hcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
...++++|++.|.......+ |...|--+.-.-++.++++.....-....+ ..-..|.....++.-.|++..|..+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998666555 566777666666677777766665555443 34568888888888999999999999
Q ss_pred HHHHHcC-CCCCHhhHHHHH------HHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 401 RSMVREG-PKPNNYTLSAML------SVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 401 ~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
++..+.. -.|+...|.... ......|.++.+.+.+...... +......-..-.+.+.+.|++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 8887654 246655554332 2234566667766665544332 2222333345567788899999999999988
Q ss_pred ccC-CChhHHHHHHH
Q 003937 474 HWR-QETVSWTSMIV 487 (785)
Q Consensus 474 ~~~-p~~~~~~~li~ 487 (785)
..+ ||..-|.-.+.
T Consensus 246 l~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLE 260 (700)
T ss_pred HhhCchhHHHHHHHH
Confidence 655 77766655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00012 Score=78.92 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHc
Q 003937 315 VGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQN 390 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~ 390 (785)
++.-+...|-..|++++|++.+++.....| .+..|..-.+.|-+.|++.+|...++....-| -..=+-.+..+.++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 335556777788888888888888666666 46678888888888888888888888776543 33334456667788
Q ss_pred CChhHHHHHHHHHHHcCC
Q 003937 391 GLNKDAVELFRSMVREGP 408 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~ 408 (785)
|+.++|.+++....+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCHHHHHHHHHhhcCCCC
Confidence 888888888877766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-05 Score=84.36 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=183.7
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhH-HHHHHHHHHHc-----C
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIKIGDIGPARRIFDSLRDR--DVVA-WTAMLVGYEQN-----G 391 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~-----g 391 (785)
..+...|++++|++.+++....-+|. .........+.+.|+.++|..++..+.++ +-.. |..+..+.... .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 34567788888888887765555554 44556678888888888888888888763 3333 34444443222 2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL-DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
..+...++|+++...- |.......+.-.+.....+ ..+...+....+.|+|+ +++.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 4566777888776542 4444333332222221122 33455556666667544 4455666666555555445555
Q ss_pred Hhcc-----------------cCCChhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCH
Q 003937 471 NLIH-----------------WRQETVSW--TSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLV 530 (785)
Q Consensus 471 ~~~~-----------------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 530 (785)
.... ..|....| .-+...|-..|++++|+++.++.++ ..|+.+ .|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCH
Confidence 4431 12344445 4456678899999999999999999 578865 788888899999999
Q ss_pred HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC---CCC--CH----HHHH--HHHHHHHhcCCHH
Q 003937 531 EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP---LEP--DV----VAWG--SLLSACRVHKNLD 599 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~~----~~~~--~ll~~~~~~g~~~ 599 (785)
++|.+..+...+ --.-|...-+-.+..+.|+|++++|.+++.... ..| |. ..|- ....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998875 123345555667788899999999998877662 122 11 2453 3355588999999
Q ss_pred HHHHHHHHHHh
Q 003937 600 LGKIAAEKLLL 610 (785)
Q Consensus 600 ~a~~~~~~~~~ 610 (785)
.|+.-+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=86.03 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=88.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hccCC
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC----THGGL 529 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~ 529 (785)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...|.. ...+..++ ...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 34566678888887777654 2556666677778888888888888888876 344443 22233322 22235
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003937 530 VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL-DLGKIAAE 606 (785)
Q Consensus 530 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~ 606 (785)
+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++.+. ...| |..++..++-.....|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6677777777654 33455555666666666666666666665554 3333 244444555554555554 45556666
Q ss_pred HHHhhCCCCc
Q 003937 607 KLLLIEPDNS 616 (785)
Q Consensus 607 ~~~~~~p~~~ 616 (785)
++....|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0012 Score=68.29 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 393 NKDAVELFRSMVREG-PKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS-SLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
.+.....+++.+..- ..|+ .+|...++...+...+..|+.+|..+.+.+..+ ++.++++++..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455666666665532 3444 567888888889999999999999999988777 8999999999887 57889999999
Q ss_pred Hhc-ccCCChhHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCC-
Q 003937 471 NLI-HWRQETVSW-TSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHK- 545 (785)
Q Consensus 471 ~~~-~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 545 (785)
+-- +.-+|...| +..++-+..-++-..|..+|++....++.||. ..|..+|.--+..|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 854 433555544 56677788889999999999999998888876 4899999999999999999998887765443
Q ss_pred -CCCCchhHHHHHHHHhhcCCHHH
Q 003937 546 -IKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 546 -~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
..+...+-..+++.|+-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 44444455666777766555433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-06 Score=77.83 Aligned_cols=303 Identities=14% Similarity=0.102 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHH-HHHHHHHcC
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTA-MLVGYEQNG 391 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 391 (785)
+++.+.-+.+..++++|++++..-.+..| +....+.+..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 45555556677778888888777666666 666777778888888888888888887765 32222221 134556778
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSV--SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+..+.-.. .+..+.+...-...+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888888888877642 332222222222 23445565565555544221 1222333333345577777887777
Q ss_pred HHhcccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 470 FNLIHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 470 ~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
|+....- .....||.-+.-| +.|+++.|+++..++.+.|++-.+.. ..|...++..+ +.+ |
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCch-hcc----c-
Confidence 7765321 2445566555433 45677777877777777776543321 00111111110 000 0
Q ss_pred CCCc-------hhHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 547 KPTP-------SHFASMVDLLGRAGLLQEAYNFIENMP----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 547 ~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|-. ..+|.-...+.+.|+.+.|.+-+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 0111 123333345678999999999999994 34577777655322 34566777888888888999988
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
+.||..++-+|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999888754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-07 Score=89.55 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=129.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCC---ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ---ETVSWTSM-IVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
.|.......+...+...++-+.+..-+++....+ +..++..+ ...+...|++++|++++++- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4444443344333333344455555554432221 11222222 23456679999999988642 34456667
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH---FASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRV 594 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~ 594 (785)
.+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 77889999999999999999975 3344222 223334333335799999999999 345678888888889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW-EDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 645 (785)
.|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6677888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-05 Score=72.78 Aligned_cols=190 Identities=11% Similarity=0.068 Sum_probs=128.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccC
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGG 528 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 528 (785)
.|.-.|...|+...|..-+++.... | +..+|..+...|.+.|..+.|.+-|++... +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 4555677777777777777765422 2 445677777777777777777777777777 56654 35666666666777
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
.+++|...|+....+....--..+|..++-.-.+.|+.+.|.+.|++. ...|+ ..+...+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777777664333333556667776677777777777777766 44454 4456666666777777777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+.....+.+....-..+.+--..|+-+.+-++=..+.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7776555566666666677777777777766655554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=71.09 Aligned_cols=292 Identities=15% Similarity=0.094 Sum_probs=151.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH---HHHHHcCChh
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAML---VGYEQNGLNK 394 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~ 394 (785)
|-..+...|++.+|+.-|....+.+| +-.++..-...|...|+...|..-|+++.+-.+..+.+-| ..+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 44445556777777777776666555 3445555566677777777777666666553333333333 2456777777
Q ss_pred HHHHHHHHHHHcCCCCCH--------------hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003937 395 DAVELFRSMVREGPKPNN--------------YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKA 460 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~--------------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 460 (785)
+|..-|+..++....-+. ......+..+...|+...+......+++. .+.|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhc
Confidence 777777777664321110 01122233344456666666666665553 244566666666777777
Q ss_pred CCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH---HH---------HHhh
Q 003937 461 GNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVG---VL---------TACT 525 (785)
Q Consensus 461 g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll---------~a~~ 525 (785)
|++..|..-++.... ..+..+.--+-..+-.-|+.+.++...++-++ +.||.. +|.. += ....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665554421 12455555555566667777777777777666 566653 2211 10 0112
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 598 (785)
..+.|.++.+-.+...+ ..|. ...+..+-..|...|++.+|+....+. .+.|| +.++.--..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 22333333333333322 1222 111222333444445555555544443 33443 44444444445555555
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 003937 599 DLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~ 616 (785)
+.|+.-|+++.+.+|+|.
T Consensus 358 D~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHhcCcccH
Confidence 555555555555555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00017 Score=76.12 Aligned_cols=296 Identities=12% Similarity=-0.006 Sum_probs=166.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHh---HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh-hHHH--
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVV---AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY-TLSA-- 417 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~-- 417 (785)
..|..+...+...|+.+++.+.+....+ ++.. ........+...|++++|.+++++..+. .|+.. .+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhH
Confidence 3444455555555555554444443321 1111 1122233456678888888888887764 34333 2221
Q ss_pred -HHHHHhccCchHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcC
Q 003937 418 -MLSVSSSLASLDHGKQIHASALRSGEASS-LSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHG 493 (785)
Q Consensus 418 -ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g 493 (785)
........+....+.+.+.. .....|+ ......+...+...|++++|...+++.... | +...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 11111123444444444433 1122232 334445666788889999999888876422 3 4566777888888899
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH-H--HHHHHHhhcCCHH
Q 003937 494 LGEEAIQLFERMLELGI-KPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF-A--SMVDLLGRAGLLQ 567 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 567 (785)
++++|+..+++.....- .|+. ..|..+...+...|++++|..++++........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888876421 1232 234567777888899999999998875321111111111 1 2333344444333
Q ss_pred HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C---C-----CchhHHHHHHHHHhcCC
Q 003937 568 EAYNF---IENM-PLEPD---VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE-P---D-----NSGAYSALCNLYSSCGK 631 (785)
Q Consensus 568 ~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~ 631 (785)
.+.++ .... +..|. .........++...|+.+.|...++.+.... . . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111 11111 1222345556778889999999998886632 1 1 23455677778899999
Q ss_pred hHHHHHHHHHHHhCC
Q 003937 632 WEDAANIRKSMKYVG 646 (785)
Q Consensus 632 ~~~a~~~~~~m~~~g 646 (785)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0005 Score=71.04 Aligned_cols=238 Identities=17% Similarity=0.149 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA 426 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 426 (785)
...+.+...+..+++.|..-++...+ .++.-++....+|...|.+.+.........+.|..- ..-|+.+-.++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~---- 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKAL---- 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHH----
Confidence 34445555555566666666655443 233344555566777776666665555543332110 00111111000
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CChhHHHHHHHHHHHcCChHHHHHHHH
Q 003937 427 SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--R-QETVSWTSMIVALAQHGLGEEAIQLFE 503 (785)
Q Consensus 427 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (785)
..+...|.+.++++.|...|.+... + ||. ..+....++++...+
T Consensus 302 ------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 302 ------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAE 348 (539)
T ss_pred ------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHH
Confidence 1133456666777777777766421 1 222 122233445555444
Q ss_pred HHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003937 504 RMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD 581 (785)
Q Consensus 504 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 581 (785)
...- +.|+.. -...-...+.+.|++..|...+.++++. -+-|...|..-.-.|.+.|.+.+|++=.+.. ...|+
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 4443 444432 1222255677788888888888887752 2455777887888888888888877765554 44565
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 582 V-VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 582 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
. ..|.-=..++....+++.|.+.|++.++.+|++...-..+...+..
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3 3454445556667789999999999999999887776666666554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-06 Score=84.51 Aligned_cols=216 Identities=18% Similarity=0.219 Sum_probs=167.0
Q ss_pred HHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAV 397 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 397 (785)
-+.+.|++.+|.-.|+.....+| +..+|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 36788999999999998777666 789999999999999999999999988876 36677777888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHhhHHHHHHHHhccCchHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 398 ELFRSMVREGPK--------PNNYTLSAMLSVSSSLASLDHGKQIHASAL-RSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 398 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
..++..+....+ ++..+-.. ........+....++|-.+. ..+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998664311 00000000 11122223344445544444 44656888888999999999999999999
Q ss_pred HHHhc-ccCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 469 VFNLI-HWRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 469 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
.|+.. ..+| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99976 4555 677899999999999999999999999999 899986 55567778999999999998876554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0012 Score=79.47 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=23.5
Q ss_pred HHhcCChHHHHHHhhhcCC----CCcccHHHHHHHHhhCCCchHHHHHHHHh
Q 003937 221 HIHSGRLDLARAQFDQMIE----RDVVTWNSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 221 ~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (785)
+...|+++.+.+.++.++. .+..........+...|++++|..++...
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566666666555421 12222223333444556666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00023 Score=67.54 Aligned_cols=384 Identities=13% Similarity=0.066 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
+++.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-..++++ . ...|...-|..-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~--ql~P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-G--QLHPELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhChHHHHHHHH------
Confidence 455666666777777777776655443 3344555666666666777777777666 2 233443333110
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchH--hHHHHHHHHHhcCCHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVI--AFTTLLDGYIKIGDIGPARRI 368 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~ 368 (785)
-...+.+.+.+.+|+++...|.+.+ +.. +...-.......+++..++.+
T Consensus 84 ----------------------------~AQSLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 84 ----------------------------QAQSLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSL 134 (459)
T ss_pred ----------------------------HHHHHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHH
Confidence 0112233444555555555544431 111 111111122234455555555
Q ss_pred HHhcCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC--
Q 003937 369 FDSLRD-RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS-- 445 (785)
Q Consensus 369 f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-- 445 (785)
.++.+. .+..+.+.......+.|+++.|++-|+...+-|---....|+..+ +..+.++.+.|.....+++.+|+..
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 555552 333333333333445566666666665554432222223444333 2334455555555555555544321
Q ss_pred -----------c--------hHHHHHHHH-------HHHhcCCHHHHHHHHHhcccC----CChhHHHHHHHHHHHcCCh
Q 003937 446 -----------S--------LSVSNALIT-------MYSKAGNINAARRVFNLIHWR----QETVSWTSMIVALAQHGLG 495 (785)
Q Consensus 446 -----------~--------~~~~~~li~-------~y~~~g~~~~A~~~~~~~~~~----p~~~~~~~li~~~~~~g~~ 495 (785)
| ...-++++. .+.+.|+.+.|.+.+..|+.+ .|++|...+.-. -..+++
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCc
Confidence 1 111123333 456789999999999999754 477776554322 124555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHH
Q 003937 496 EEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFI 573 (785)
Q Consensus 496 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~ 573 (785)
.+..+-+.-+.+ +.| ...||..++-.|++..-++-|-.++.+-....-.-.+...|+ |++.+.-+ -..++|++-+
T Consensus 293 ~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 293 TEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKL 369 (459)
T ss_pred cccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHH
Confidence 555555555555 345 346999999999999888888887754321000011222333 33444333 3566666655
Q ss_pred HhCCCCC-C-HHHHHHHHHHHHhcCCHH----HHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 574 ENMPLEP-D-VVAWGSLLSACRVHKNLD----LGKIAAEKLLLIE-PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 574 ~~~~~~p-~-~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.+...- + .-....-+. -.++.+-+ .+.+-+++.+++- | ...+-++.|.+..++..+.+.|+.-.+.
T Consensus 370 ~~La~~l~~kLRklAi~vQ-e~r~~~dd~a~R~ai~~Yd~~LE~YLP----VlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQ-EARHNRDDEAIRKAVNEYDETLEKYLP----VLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 5441000 0 000000011 11222222 2333444444432 3 5566778899999999999998876543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-06 Score=85.64 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=162.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-C-CChhHHHHHHHHHHHcCChHHHHH
Q 003937 423 SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-R-QETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
.+.|++.+|.-.|+..++.. +-+...|--|...-...++-..|+..+.+... . .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888777764 34566666676667777777777777776532 2 256667777777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHH--------HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHH
Q 003937 501 LFERMLELGIKPDHITYVGV--------LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 501 ~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 572 (785)
.|+.-+.. +|...-...- -........+....++|-.+....+..+|..+..+|.-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88776552 1111100000 0112222334455566666655566667888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 573 IENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 573 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+.. ..+| |...||-|...++...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 6678 5789999999999999999999999999999998888889999999999999999998877653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=58.79 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=27.4
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=58.43 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00081 Score=80.88 Aligned_cols=324 Identities=14% Similarity=0.040 Sum_probs=190.9
Q ss_pred HHhcCChHHHHHHHHHhCCCC--CchHhHHHHHHHHHhcCCHHHHHHHHHhcCC----C------CHh--HHHHHHHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISY--LNVIAFTTLLDGYIKIGDIGPARRIFDSLRD----R------DVV--AWTAMLVGYE 388 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~------~~~--~~~~li~~~~ 388 (785)
....|+++.+...++.+.... .+..........+...|++++|...+....+ . ... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666542111 1122223334444566777777776654421 1 111 1112223455
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CchHHHHHHHHHHHh
Q 003937 389 QNGLNKDAVELFRSMVREGPKPNN----YTLSAMLSVSSSLASLDHGKQIHASALRS----GEA-SSLSVSNALITMYSK 459 (785)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~ 459 (785)
..|++++|...+++....-...+. .....+...+...|+++.|...+...... |.. ........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 688888888888877653111121 12333444556788888888887777643 111 112344556677788
Q ss_pred cCCHHHHHHHHHhccc------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhh
Q 003937 460 AGNINAARRVFNLIHW------RQ----ETVSWTSMIVALAQHGLGEEAIQLFERMLEL--GIKPD--HITYVGVLTACT 525 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~------~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~ 525 (785)
.|++++|...+++... .+ ....+..+...+...|++++|...+++.... ...+. ..++..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8999999888775421 11 1223444555667779999999988887653 11222 224444556677
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHh
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHF-----ASMVDLLGRAGLLQEAYNFIENMPLE--PDV----VAWGSLLSACRV 594 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~ 594 (785)
..|++++|...+........-......+ ......+...|+.++|.+++...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999998888775321111111111 11224455688999999988776311 111 113455566788
Q ss_pred cCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 595 HKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|+.++|...++++..... ....+...++.+|...|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999877421 123467778888999999999999999887543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00045 Score=72.96 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH--hHHHHHHHHHHHc
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-----DV--VAWTAMLVGYEQN 390 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~ 390 (785)
+...+...|++++|...+++.....| +...+..+...|...|++++|...++..... +. ..|..+...+...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 33445555555555555555444333 3444555555555555555555555544321 11 1233344445555
Q ss_pred CChhHHHHHHHHH
Q 003937 391 GLNKDAVELFRSM 403 (785)
Q Consensus 391 g~~~~A~~~~~~m 403 (785)
|++++|+.+|++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-05 Score=86.34 Aligned_cols=231 Identities=16% Similarity=0.195 Sum_probs=163.8
Q ss_pred hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 003937 339 SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR--------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKP 410 (785)
Q Consensus 339 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 410 (785)
+...+.+...|-..+.-..+.+++++|++++++.... -...|-+++..-...|.-+...++|++..+.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---- 1526 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---- 1526 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----
Confidence 3344445677888888888888888888888776531 2345666666555556555566666665542
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~ 488 (785)
.....+|..|...|.+.++.++|-++|+.|-.+ .....|...+..
T Consensus 1527 ---------------------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1527 ---------------------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred ---------------------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 112334567888899999999999999988543 366789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPD--HI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL 565 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (785)
+.++++.+.|..++.+.++. -|. .+ ...-.+..-.+.|+.++|+.+|+.... ..+-....|+.++++=.+.|.
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCC
Confidence 99999999999999999884 454 33 233334445678999999999998876 344557789999999999999
Q ss_pred HHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 566 LQEAYNFIENM---PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 566 ~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.++.+|++. .+.|- -..|.-.+.-=..||+-+..+.+-.++.+
T Consensus 1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999987 34442 34566666666677776666665555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-06 Score=72.69 Aligned_cols=122 Identities=9% Similarity=-0.009 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 500 QLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 500 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
.+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 45554 33455666777788888877777764 12334666777777777788888888877777 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
.| +...|..+..++...|+.++|...+++++++.|+++..+....++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 46677777777888888888888888888888888777776666553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=76.79 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=123.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET----VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI---- 515 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 515 (785)
.....+..+...|.+.|++++|...|+++... |+. ..|..+..+|.+.|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 45566677777888889999999888876432 332 3567778888888999999999999887 345432
Q ss_pred HHHHHHHHhhcc--------CCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 003937 516 TYVGVLTACTHG--------GLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWG 586 (785)
Q Consensus 516 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 586 (785)
++..+..++... |+.++|.+.++.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455543 6778888888877652 34322 22211111 1111100 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+...+...|+.+.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566888999999999999999987754 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0003 Score=72.54 Aligned_cols=376 Identities=14% Similarity=0.071 Sum_probs=224.2
Q ss_pred HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCC
Q 003937 250 AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDAT-GPVGNALISCYAKVGG 328 (785)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~ 328 (785)
.+.+..|+++.|+.+|.+.+.-. ++|.+-|+.-..+++..++++.|.+=-...++. .|+ .--|+.+..+..-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45677899999999998874322 347888999999999999998887655544443 444 3456777778888899
Q ss_pred hHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHh------cC-CC------CHhHHHHHHHHHHHc----
Q 003937 329 VEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDS------LR-DR------DVVAWTAMLVGYEQN---- 390 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~------~~-~~------~~~~~~~li~~~~~~---- 390 (785)
+++|..-|.+-...+| |...++-+.+++.-. . .+-..|.. +. .| ....|..++..+-++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999766666 667788888777111 0 11111110 00 00 011233333322211
Q ss_pred ------CChhHHHHHHHH-----HHHc-------CCCCC----------------------HhhHHHHHHHHhccCchHH
Q 003937 391 ------GLNKDAVELFRS-----MVRE-------GPKPN----------------------NYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 391 ------g~~~~A~~~~~~-----m~~~-------g~~p~----------------------~~t~~~ll~a~~~~~~~~~ 430 (785)
.+...|.-.+.. +... +..|. ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 011111111110 0000 11110 0112234445555556666
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-h-------HHHHHHHHHHHcCChHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-V-------SWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~-------~~~~li~~~~~~g~~~~A~~~ 501 (785)
+.+-+...+... .++.-++.....|...|...+....-+...++ ... . ....+..+|.+.++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 666666665554 44555556666666666666555444332211 011 1 122233456666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh-HHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003937 502 FERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH-FASMVDLLGRAGLLQEAYNFIENM-PLE 579 (785)
Q Consensus 502 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~ 579 (785)
|.+.+..-..||..+ +....+++........ -+.|.... .-.=..-+.+.|++.+|.+.+.++ ...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 777665444444322 1122333333332221 22333211 111245677899999999999888 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 580 P-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 580 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
| |...|..-..+|.+.|++..|..-.+..++++|+....|..=+-++....+|++|.+.+++..+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 577888888889999999999999999999999888888888888888899999999998876543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-05 Score=71.96 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSA-CRVHKN--LDLG 601 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 601 (785)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. .+.| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5556666666666554 23455777888888888888888888888877 4566 46677777766 366676 5899
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7e-05 Score=85.05 Aligned_cols=201 Identities=13% Similarity=0.116 Sum_probs=161.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWR-------QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
+.+...|-..+......+++++|++++++.... --.-.|.++++.-...|.-+...++|++..+ ..-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 445566666777777888999999888876322 1234688888888888888888999999987 2222347
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSLLSAC 592 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 592 (785)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.+. ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888999999999999999999998666 56677999999999999999999998877 32332 33444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
.++|+.++++.+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-05 Score=68.56 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=97.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
....-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+|+.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455667778999999999999988 5667 46678889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 628 SCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
..|+.+.|.+-|+...... ..+|+..++..+++...+.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886531 134666666666766666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=70.15 Aligned_cols=99 Identities=10% Similarity=-0.045 Sum_probs=87.9
Q ss_pred CCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 003937 546 IKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALC 623 (785)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 623 (785)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3444 3556788899999999999999987 5566 5778999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 003937 624 NLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 624 ~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-05 Score=81.14 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=138.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL 521 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 521 (785)
+++|--..-..+.+.+..+|-..+|..+|+++ ..|--.|.+|+..|+..+|..+..+-.+ -+||+.-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 45566666677888999999999999999865 4577788899999999999999888887 578889999999
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 599 (785)
+.....-.+++|+++.+...... -..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 98888888899998887664320 011112223456777777766654 4444 3557777666667777777
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|...|.....++|++...|+.+.-+|.+.|+-.+|...+++..+..
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777777777777776554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00053 Score=69.71 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS 458 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 458 (785)
+++.+-..+...++.++|+.++.++++ +.|+..|. ++.--..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHH
Confidence 444444555566677777777777665 34544432 122222223
Q ss_pred hcC-CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 459 KAG-NINAARRVFNLIHWR--QETVSWTSMIVALAQHGLG--EEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 459 ~~g-~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
+.| .+++++..++++... .+...|+-..-.+.+.|+. ++++.+++++.+ ..|+ ..+|.....++.+.|.+++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHH
Confidence 334 456777776665321 2445566554444455542 567777777776 4554 3577777777777788888
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----CHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---GL----LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK----NLD 599 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g----~~~ 599 (785)
+++.++++.+. -.-+...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+...+ +..
T Consensus 161 eL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 88888887752 123344555544444433 22 24566666444 5566 5778998888887743 446
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCG------------------KWEDAANIRKSMK 643 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 643 (785)
+|...+.++.+.+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6888899988889989999999999998743 2366777777773
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00019 Score=67.44 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
.+....+.|++.+|...+.+... .-++|...|+.+.-.|-+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444444444444444432 33344444444444444445544444444333 2333 23344445555555555
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.+.|+.++.......+.|+..-..|.-+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444444444444555555555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=81.10 Aligned_cols=139 Identities=11% Similarity=0.074 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577788888888999999999999999998 789876 677778889999999999999988875 223346667778
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 557 VDLLGRAGLLQEAYNFIENMP-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
...+.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 888999999999999999883 3454 678888888899999999999999999987643434433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=54.23 Aligned_cols=35 Identities=46% Similarity=0.764 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH 514 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 514 (785)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=68.11 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
+-+|.+.|+++......+.+..... .|...++.++++..+++..+ ..|+ ...|..+...+...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4567888888776555443322100 12235667888888888877 3554 4578888889999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDL-LGRAGL--LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
|...+++..+. -+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988752 23356677777776 467777 58999999988 5566 467888888889999999999999999
Q ss_pred HHhhCCCCchhHH
Q 003937 608 LLLIEPDNSGAYS 620 (785)
Q Consensus 608 ~~~~~p~~~~~~~ 620 (785)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999887665443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=67.50 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGS 587 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 587 (785)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...|.+. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456543335566677888888888888776543 33455566677899999999999999999998 34557899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
+..+|-+.|+++.|...+.+++++.|.++..++.|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0011 Score=68.00 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=86.1
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 600 (785)
.....|.+++|+..++.+.+ ..+.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777788888777765 33444555566677788888888888887777 45665 5566677777788888888
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|+..++....-+|+|+..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888777777777666553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00025 Score=69.87 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=126.0
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC-C-chHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-h---HHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEA-S-SLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-V---SWT 483 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~---~~~ 483 (785)
....+-.....+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...++++... |+. . +|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445666777888999999999999999876432 1 1245677889999999999999999987532 322 2 455
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 484 SMIVALAQH--------GLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 484 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
.+..++... |+.++|++.|+++.. ..|+.. ....+..... . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence 556666654 778999999999988 466653 2222211100 0 00000 0122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+.+.|.+.|+.++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667788999999999888887 2233 256888899999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.7e-06 Score=52.86 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN 412 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 412 (785)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.038 Score=61.18 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=88.1
Q ss_pred HHHHHHHhccCchHHHHH---HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---CChhHHHHHHHHH
Q 003937 416 SAMLSVSSSLASLDHGKQ---IHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---QETVSWTSMIVAL 489 (785)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~ 489 (785)
+.++..|-+.++.....+ +++.-... -+.|..+--.||..|+--|-+..|.++|+.+..+ -|...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 355667777777653332 22222222 2334455567888999889999999999988655 1333222 22344
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHH---HHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRY---YNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
...|++..+...+++...- --+. .|-..+..|| +.|.+.+..+. -+++.. .....-..+-+..++.+...+
T Consensus 518 ~t~g~~~~~s~~~~~~lkf--y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF--YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HhcccchhHHHHHHHHHHH--HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 5566777666666655431 1111 1222222233 23444333332 222321 011112333456778888888
Q ss_pred CHHHHHHHHHhCCCCC--CHHHHHHH
Q 003937 565 LLQEAYNFIENMPLEP--DVVAWGSL 588 (785)
Q Consensus 565 ~~~~A~~~~~~~~~~p--~~~~~~~l 588 (785)
+.++-...+..|.++| |..-|..|
T Consensus 594 ~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred cHHHHHHHHhccccCcchhhcccccc
Confidence 8888888888886444 33344443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0013 Score=70.43 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL 428 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 428 (785)
-..+...+...|-...|..+|++. ..|.-.|..|+..|+..+|..+..+-.+ -+||...|..+.+......-+
T Consensus 401 q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 345566777778888888888874 5677788889999988888888877766 468888888888877777777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWR-QETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
++|.++.+..... .-..+.......++++++.+.|+.- ... -...+|-....+..+.++.+.|.+.|..-.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 8888777665332 1111222223468888888888753 322 256678888888888899999999998888
Q ss_pred HCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 507 ELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 507 ~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
. ..||.. .|+.+-.++.+.|.-.+|...+++..+ .. .-+...|...+-...+.|.+++|.+.+.++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 7 688775 899998999999999999999988876 44 344455666667778889999998888877
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0016 Score=66.86 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL-TACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVD 558 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 558 (785)
.+--..-.+...|++++|+..++.+.. -.||...|..+. ..+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333334445667899999999999888 477777665554 578899999999999998875 4566 455567788
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHH
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+|.+.|+.++|...++.. .-.| |+..|..|..+|...|+..++... ....|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999887 2234 688999999999999987766654 445688899999999
Q ss_pred HHHHHHHhCC
Q 003937 637 NIRKSMKYVG 646 (785)
Q Consensus 637 ~~~~~m~~~g 646 (785)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999887653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=74.49 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=117.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYV 518 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 518 (785)
....+...+-.|.+.....|.+++|..+++... ..|| ...+..+...+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 455668888889999999999999999999875 3354 55688889999999999999999999998 578775 556
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLS 590 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 590 (785)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+...+-+.|+.++|...|++. ...|.+..|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 666688999999999999999985 22334678888999999999999999999988 23455566666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=51.08 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 512 (785)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999888887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-05 Score=65.37 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=77.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777888888888888776 3345 56677778778888888999999999988888888888888999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988887664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.036 Score=57.72 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhcccCC---ChhHHHHHHHHHHHcCChHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAG---NINAARRVFNLIHWRQ---ETVSWTSMIVALAQHGLGEEAIQLF 502 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~ 502 (785)
+++..+++..+..-...+..+|..+.+---..- ..+.....+++....+ -..+|-.++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555555433344444444443211111 2344444555443221 2346777888777777789999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 003937 503 ERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PL 578 (785)
Q Consensus 503 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 578 (785)
.+..+.+..+. ....++++.-++ .++.+-|.++|+.=.+.+| .++.--.+.++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999988884 446777776554 5788999999987766443 44455678889999999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 579 EPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN----SGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 579 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.|| ...|..+|.-=..-|++....++-++....-|.+ ...-..+++.|.-.+++..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 4689999999999999999999999888765522 123445677777777777666666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0024 Score=72.62 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
.+-.|..+|-+.|+.++|..+++++.. ..|+...|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 344555666666666666666665431 12455556666666665 666666666555442 333
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
..++..+.++|.++.. ..+.+...+--+.... ....+...-+.+|--|-..|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4455555555555543 1111222211111111 1111112223344444555566666666777777
Q ss_pred HHHhhCCCCchhHHHHHHHHH
Q 003937 607 KLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~ 627 (785)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777766666666666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=50.56 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP 143 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 143 (785)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888999999999999999999998888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=74.57 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
.+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34455556666777777777776642 243 3344666666667777777777666 2234 555666666668899
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++.+.|..+++++.++.|++..+|..|+.+|.+.|++++|.-.++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0044 Score=58.45 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRVH-KNLDLGKIAA 605 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~ 605 (785)
.+.+|.-+|++|.. ...|+..+.+.+.......|++++|..++++. .-..++.+...++-.-... .+.+--.+..
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34445555555543 23444444444444444455555555555444 1111233333333222222 2333344455
Q ss_pred HHHHhhCCCC
Q 003937 606 EKLLLIEPDN 615 (785)
Q Consensus 606 ~~~~~~~p~~ 615 (785)
.++....|..
T Consensus 266 ~QLk~~~p~h 275 (299)
T KOG3081|consen 266 SQLKLSHPEH 275 (299)
T ss_pred HHHHhcCCcc
Confidence 5555555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.032 Score=54.62 Aligned_cols=307 Identities=11% Similarity=0.045 Sum_probs=168.4
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHH---HHHHccCChhHHHHHHhhCCCCCccHHHHHH---HH
Q 003937 46 LSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTIL---SAYAKQGRLDLACEVFNLMPNRDSVSWTTII---VT 119 (785)
Q Consensus 46 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~ 119 (785)
.++.-.--|-..+...|.+.+|..-|....+.|...|-++- ..|...|+-..|+.-|++..+.-+.-+.+-| ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 44445555667777788888888888888776666555543 3567777777777766666542222222222 34
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCC--hhhH------------HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLPT--QFTV------------TSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNS 185 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~------------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 185 (785)
+.+.|.+++|..-|+..++....-+ ...+ ...+..+...||...+.....++++.. +.|+..+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 5678888999888888876532111 1111 222344556677777777777777665 556777777
Q ss_pred HHHHHHhCCChHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHH
Q 003937 186 LLNMYAKVGDEMMAKAVFDG---MRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEAL 262 (785)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 262 (785)
-..+|...|++..|..=++. +...++.+.--+-..+...|+.+.++...++..+-|+..=.. |.--....+..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHHHHHHH
Confidence 77777777777777654443 234445555555555666666666655555543322211000 00000001111
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 263 GMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDAT---GPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 263 ~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
+.++.| ......+++..+..-.+.+++...... ...+..+-..|...|++.+|++...+.
T Consensus 271 K~les~-----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 271 KSLESA-----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 111111 112233444444444444444432211 122334445566666777777777766
Q ss_pred CCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003937 340 GISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD 374 (785)
Q Consensus 340 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 374 (785)
....| |+.++---..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66555 466666666667666677777776666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0023 Score=65.06 Aligned_cols=186 Identities=11% Similarity=0.076 Sum_probs=133.8
Q ss_pred HHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC-
Q 003937 455 TMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHG-LGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGL- 529 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 529 (785)
..+...+..++|+.+.+++.. .| +...|+..-..+...| ++++++..++++.+. .|+. .+|+.-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 334556788888888887643 23 4456777666666777 579999999999984 5554 356655545555565
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH---KN----LD 599 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~~ 599 (785)
.+++..+++++.+ .-+-+...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3677888888875 22345677888888888999999999999998 4445 577888777665544 22 24
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSC----GKWEDAANIRKSMKY 644 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 644 (785)
.......++++++|+|..+|.-+..+|... ++..+|.+......+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 677888899999999999999999999873 445667777666443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0025 Score=72.49 Aligned_cols=172 Identities=11% Similarity=0.086 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcC
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNG 391 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (785)
...+..|+..|...+++++|.++.+......|+ ...|-.+...+.+.++.+++..+ .++..+....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345667888888888888888888876666663 34444445566666665555544 2333333344
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFN 471 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 471 (785)
++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443333444444442 2233456677777888888888888888888877 66777888888888888 8888888877
Q ss_pred hcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 472 LIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 472 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
+...+ |...+++.++.+++.++.. ..|+.+
T Consensus 174 KAV~~------------~i~~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 174 KAIYR------------FIKKKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHH------------HHhhhcchHHHHHHHHHHh--cCcccc
Confidence 65433 5556677777777777777 455544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00058 Score=60.42 Aligned_cols=113 Identities=9% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 501 LFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 501 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
+|++... ..|+.. ....+...+...|++++|.+.++.+... -+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 456543 4555666777888888888888887652 2345667777888888888888888888776 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4667777788888999999999999999999986654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.11 Score=57.79 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 482 WTSMIVALAQHGLGE---EAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 482 ~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
-|.|+..+.+.++.. +|+-+++.-.. ..| |..+-..++..|+-.|.+..|.+.|+.+.- ..+..|..-|- +.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HH
Confidence 467888888888754 45556665555 234 445667788899999999999999998854 45665544332 33
Q ss_pred HHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHh
Q 003937 558 DLLGRAGLLQEAYNFIENMP-----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD----NSGAYSALCNLYSS 628 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~ 628 (785)
..+...|++..+...+...- -..+..- +|....++|.+..-.++...=..+.-. -..+-...++..+.
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677776666655540 0111222 223334556655444433222222111 11234466777888
Q ss_pred cCChHHHHHHHHHHH
Q 003937 629 CGKWEDAANIRKSMK 643 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~ 643 (785)
.++.++-...+..|+
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 888888888888886
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0075 Score=56.53 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC-CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWR-QE---TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~-p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
+..++-+...+|+.+.|...++++..+ |. +.-..+| -+-..|++++|+++++..++.+ +.|.+++.-=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 344555666788899999988887644 22 2222222 2455788999999999999865 445567776666666
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCCHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRV---HKNLDL 600 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~---~g~~~~ 600 (785)
..|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.-.++++ -+.|- ...+..+...+.- ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788877777765 46778899999999999999999999999888 34564 4444555555332 337788
Q ss_pred HHHHHHHHHhhCCCCchhHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l 622 (785)
|.+.+++++++.|.+......+
T Consensus 210 arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHH
Confidence 9999999999998655444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00094 Score=69.28 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTH 526 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 526 (785)
....+|+..+...++++.|..+|+++..+ ++..+..|+..+...++..+|++++++..+. .| |...+..-...|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34456677777788999999999998766 4455556778888888888999999998873 44 44455555566888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENMPLEP 580 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 580 (785)
.++++.|..+.+++.+ ..|+ ..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8999999999988875 3454 6689999999999999999999999887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.8e-05 Score=47.64 Aligned_cols=31 Identities=39% Similarity=0.630 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 510 (785)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.4e-05 Score=46.91 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQV 141 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 141 (785)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.029 Score=53.12 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
++.+......+.+.+|.-+|+++..+ |+..+.|-+..++...|++++|..++++.+... .-++.|...++-+-...|
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 34444445566788899999998764 677777888888888999999999999888753 334556666666555566
Q ss_pred CHHH-HHHHHHHhhh
Q 003937 529 LVEQ-GQRYYNMMKN 542 (785)
Q Consensus 529 ~~~~-a~~~~~~m~~ 542 (785)
...+ -.+...+++.
T Consensus 256 kd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKL 270 (299)
T ss_pred CChHHHHHHHHHHHh
Confidence 5544 3455556654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00064 Score=55.37 Aligned_cols=92 Identities=27% Similarity=0.327 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667778888999999888876 33443 4667777777888899999999999999999988888899999999999
Q ss_pred ChHHHHHHHHHHHh
Q 003937 631 KWEDAANIRKSMKY 644 (785)
Q Consensus 631 ~~~~a~~~~~~m~~ 644 (785)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.12 Score=55.46 Aligned_cols=334 Identities=15% Similarity=0.104 Sum_probs=174.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHH----------HhcCChHHHHHHhhhcCCCCcccH
Q 003937 177 SGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL-KNVSSWNVVVSLH----------IHSGRLDLARAQFDQMIERDVVTW 245 (785)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~----------~~~g~~~~A~~l~~~~~~~~~~~~ 245 (785)
.|.+..|..|...-...-.++-|+..|-+... +++...-.|-..+ .--|++++|++++-.|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777787777766666667777777755542 1221111111111 123889999999988877774
Q ss_pred HHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003937 246 NSMIAGYSQNGYDFEALGMFANMLKDSSLKPD----KFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALIS 321 (785)
Q Consensus 246 ~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (785)
.|..+.+.|++-...++++.- |-..| ...+..+-..++....++.|.+.+..--.. ..+++
T Consensus 766 --Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 466777888888888777542 21122 245666666666666677666665542211 23455
Q ss_pred HHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFR 401 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 401 (785)
+|.+..++++-+.+-+.+.+. ....-.+.+++...|.-++|...|-+-..|.. .+..|...+++.+|.++-+
T Consensus 831 cly~le~f~~LE~la~~Lpe~---s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPED---SELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcc---cchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433 33444566677777777777776665555432 2345566666777776655
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CCh
Q 003937 402 SMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QET 479 (785)
Q Consensus 402 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~ 479 (785)
... -|...|+ +.- .+.+++... + + -.-|.++.+.|..-+|-+++.+|.++ ..-
T Consensus 903 ~~~----l~qv~tl---iak--------~aaqll~~~---~------~-~eaIe~~Rka~~~~daarll~qmae~e~~K~ 957 (1189)
T KOG2041|consen 903 RFQ----LPQVQTL---IAK--------QAAQLLADA---N------H-MEAIEKDRKAGRHLDAARLLSQMAEREQEKY 957 (1189)
T ss_pred hcc----chhHHHH---HHH--------HHHHHHhhc---c------h-HHHHHHhhhcccchhHHHHHHHHhHHHhhcc
Confidence 432 2333322 211 111111111 0 0 12356778888888888888777533 001
Q ss_pred hHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 480 VSWTSM-----IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 480 ~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
+.|-.+ +.++. ..+..++++-.++....|...|... +..+|...++-++.+..-. -....|+-
T Consensus 958 ~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFm 1025 (1189)
T KOG2041|consen 958 VPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFM 1025 (1189)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHH
Confidence 111111 11111 1234455555555555554444332 1223333344343332221 12234444
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~ 573 (785)
.|..--...|.++.|+..-
T Consensus 1026 ilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHhchHHHHHHHH
Confidence 5555556677888777643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=54.14 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG-KWEDAANIRKSMKY 644 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 644 (785)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988754
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=58.29 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 563 AGLLQEAYNFIENM-PLEP---DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 2223 445566677778888888888888888 666776666777778888888999998888
Q ss_pred HHH
Q 003937 639 RKS 641 (785)
Q Consensus 639 ~~~ 641 (785)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0067 Score=56.84 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=133.9
Q ss_pred cCCHHHHHHHHHhccc-------CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccCCH
Q 003937 460 AGNINAARRVFNLIHW-------RQETV-SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGV-LTACTHGGLV 530 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~-------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 530 (785)
..+.++..+++.++.. .|+.. .|..++-+....|+.+-|...++++... + |.+.-...+ .--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887742 13333 2444555667788899999999998875 3 554321111 1124567889
Q ss_pred HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 531 EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
++|.++++.+.++. +.|..++---+.+.-..|+--+|.+-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998743 445666666666677777777887766555 34568999999999999999999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 003937 609 LLIEPDNSGAYSALCNLYSSCG---KWEDAANIRKSMKYVG 646 (785)
Q Consensus 609 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 646 (785)
+-+.|-++..+..++..+.-.| +.+-|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987776 4556777777776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=55.98 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCN 624 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 624 (785)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555566666666665555 12222 2234445555666666666666666666665543 344566666
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003937 625 LYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0053 Score=66.90 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=72.1
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 477 QETVSWTSMIVALAQ--HG---LGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 477 p~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
.|...|...+.+... .+ ...+|+.+|++..+ ..||.. .+..+..++... .+..|..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~~ 396 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPLD 396 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCcc
Confidence 477788888877443 22 26689999999988 678764 444433222111 0111110
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM---P-LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
. +.+..+.+..++. + ...+...|.++.-.....|++++|...++++++++| +...|..++.+|
T Consensus 397 ~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 397 E------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY 463 (517)
T ss_pred H------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 0 0111222222221 1 112334454444444455666666666666666666 455666666666
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|+.++|...+++....
T Consensus 464 ~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 6666666666666665443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0041 Score=55.61 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
...+...|++++|+..++... -.+-.+..+..++++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444455555555443321 1111334455556666666666666665553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=69.03 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=77.4
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
...+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566778888888888888752 2334666777788888888888888888877 4556 466777777788888888
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888877665555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0025 Score=54.75 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=57.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSA 591 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 591 (785)
..+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.++.. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543211101 1223444556666666666666666655 22232 3456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+...|+.+.|...++++++..|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7778888888888888888888665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0051 Score=55.03 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCCc----hHhHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHHcCChh
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYLN----VIAFTTLLDGYIKIGDIGPARRIFDSLRDR--DVVAWTAMLVGYEQNGLNK 394 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~ 394 (785)
..+...|++++|...|+......++ ......+...+...|++++|...++....+ ....+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 3444455555555555544333221 123334455555555555555555554332 2233344445555566666
Q ss_pred HHHHHHHH
Q 003937 395 DAVELFRS 402 (785)
Q Consensus 395 ~A~~~~~~ 402 (785)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00062 Score=51.07 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445677888888888888888888888888888888888888888888888877643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0008 Score=64.70 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=81.9
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 598 (785)
.-..+.+++.+|+..|.+.++ +.|+ ...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 346778999999999999885 4555 555666678999999999999877776 67786 56999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
++|++.|+++++++|++......|-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999887555555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0026 Score=58.64 Aligned_cols=93 Identities=13% Similarity=-0.091 Sum_probs=73.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
...+..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..+++++.+.|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777788888888888776 23332 3478888888999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 003937 625 LYS-------SCGKWEDAANIRKSM 642 (785)
Q Consensus 625 ~~~-------~~g~~~~a~~~~~~m 642 (785)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=61.76 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcC
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAG 564 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 564 (785)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346788999999999999999 6765 56677778899999999999998887764 4555 668899999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003937 565 LLQEAYNFIENM-PLEPDVVAWGSLLSA 591 (785)
Q Consensus 565 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 591 (785)
++++|.+.|++. .+.|+..+|-+=+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999887 789987777554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0037 Score=57.84 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555566666666666666655 22222 346777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 003937 627 SSCGK 631 (785)
Q Consensus 627 ~~~g~ 631 (785)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0077 Score=55.74 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD--HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFA 554 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 554 (785)
....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+.+..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344577777778888999999999988887433332 24677777788888888888888887765 233 344555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.+...|...|+...+..-++.. ...++.|...++++...+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777767665554332221 112567888888888888865 5555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.01 Score=59.59 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA-CTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888778888888888887532 2233344433333 33356677799999988873 5566777888899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.+.+.|+.+.|..+|++. ..-|. ...|...+.-=.++|+++....+.+++.+.-|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887 22233 3589999999999999999999999999988853
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.4 Score=48.85 Aligned_cols=121 Identities=11% Similarity=0.145 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 348 AFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
+.+..+.-+...|+...|.++-.+..-|+-..|-..|.+++..+++++-..+... +-.++.|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4555566667777999999999998889999999999999999999877665332 2245889999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHH
Q 003937 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV 487 (785)
Q Consensus 428 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~ 487 (785)
..+|..+...+ + +..-+.+|.++|++.+|.+.--+.+ |......+..
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 88888776652 1 2567889999999999877644433 4444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0065 Score=63.40 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGR 562 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 562 (785)
....+...|++++|++.|++.++ ..|+. ..|..+..++...|++++|...++.+.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34557788999999999999998 56654 5788888899999999999999999976 344 46678888899999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003937 563 AGLLQEAYNFIENM-PLEPDVVAWGSLLSAC 592 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 592 (785)
.|++++|...|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5677655555555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=52.44 Aligned_cols=88 Identities=11% Similarity=-0.030 Sum_probs=76.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
..-+...|++++|..+|.-+ -..| +..-|..|...|...++++.|...|..+..++++|+..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34456789999999999887 2334 455678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003937 635 AANIRKSMKY 644 (785)
Q Consensus 635 a~~~~~~m~~ 644 (785)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.41 Score=48.76 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVE 531 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 531 (785)
.-|.-+...|+...|.++-.+.+.. |..-|-..+.+|+..+++++-.++.. . +-.++-|..++.+|...|...
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCHH
Confidence 3345556678888888888777664 88888889999999998887665432 1 223477888888888888888
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSAC 592 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 592 (785)
+|..+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8888876521 2456788888999888877655543 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00085 Score=50.87 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|+..++++++.+|++......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788899999999999999998888999999999999999999988877543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=47.99 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778899999999999888 55674 66888888889999999999999999999999764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=60.77 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=95.9
Q ss_pred CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCChhH
Q 003937 407 GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS--GEASSLSVSNALITMYSKAGNINAARRVFNLIH---WRQETVS 481 (785)
Q Consensus 407 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~p~~~~ 481 (785)
+...+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..+++.=. .=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567778888889988888888888888777765 222233444689999999999999999887533 3379999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG 527 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 527 (785)
+|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988888888888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.49 Score=48.51 Aligned_cols=88 Identities=10% Similarity=0.190 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHhhCCC--
Q 003937 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTL---CSWNTILSAYAKQGRLDLACEVFNLMPN-- 107 (785)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~-- 107 (785)
.++-+.+... +.|...|-.|++-|...|..++.++++++|..|-. ..|...+++-....++.....+|.+-..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3444444432 56788899999999999999999999999988754 3788888877777788888888877554
Q ss_pred CCccHHHHHHHHHHh
Q 003937 108 RDSVSWTTIIVTYNE 122 (785)
Q Consensus 108 ~~~~~~~~li~~~~~ 122 (785)
-++..|..-+.---+
T Consensus 107 l~ldLW~lYl~YIRr 121 (660)
T COG5107 107 LNLDLWMLYLEYIRR 121 (660)
T ss_pred ccHhHHHHHHHHHHh
Confidence 366778777765444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.68 Score=50.06 Aligned_cols=186 Identities=11% Similarity=0.098 Sum_probs=117.9
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCC-----CcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 193 VGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER-----DVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
.|++++|++++-+|..+|. -|..+.+.|++-...++++.--.. -...|+.+-..+.....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999887775 356667778888877777654221 235688888888888888888888765
Q ss_pred hhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchH
Q 003937 268 MLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVI 347 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 347 (785)
- .. ....+.++.+...++.-+.+ ...++-+....-.+.+|+.+.|.-++|.+.|-+.....
T Consensus 822 ~-~~---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 822 C-GD---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred c-cc---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 4 11 12234444444444333222 22346666777788888888888888887776544332
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 003937 348 AFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA--------------MLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
.-+..+....++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 23445556667888888777766554433211 23345556666666677766654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.018 Score=57.87 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=70.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPDV-----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
+...+.|++.+|.+.+.+. .+.|+. ..|........+.|+.++|+.-.+++++++|.-...|..-++++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999988877 555543 3455555556788999999999999999999777888888888999999
Q ss_pred hHHHHHHHHHHHhC
Q 003937 632 WEDAANIRKSMKYV 645 (785)
Q Consensus 632 ~~~a~~~~~~m~~~ 645 (785)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00053 Score=43.19 Aligned_cols=33 Identities=36% Similarity=0.662 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHH
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0069 Score=49.02 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 444555566666666666666666553 3332 34444455555555555555555554431 111222333444444
Q ss_pred hhcCCHHHHHHHHH
Q 003937 561 GRAGLLQEAYNFIE 574 (785)
Q Consensus 561 ~~~g~~~~A~~~~~ 574 (785)
...|+.++|.+.+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.1 Score=46.58 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP---DVVAW 585 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 585 (785)
.-|+..--..|..+....|+..+|...|++... .-+..|....-.+.++....++..+|...+++. ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456665556677777788888888888877764 223345556666677777778888887777776 1122 22334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..+...+...|..+.|+..|+.++..-| ++..-......+.++|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566678889999999999999999888 666666677888999999888776555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0026 Score=48.94 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999999999999999999999999999998887543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=47.33 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhHH
Q 003937 113 WTTIIVTYNEIGRFKNAIRMFVEMVQDQV-LPTQFTVTSVLASCTALG--------DLSAGKKVHSFVVKTGLSGCVNVT 183 (785)
Q Consensus 113 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 183 (785)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999987553 234577889999999999999999
Q ss_pred HHHHHHHHh
Q 003937 184 NSLLNMYAK 192 (785)
Q Consensus 184 ~~li~~~~~ 192 (785)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.044 Score=50.46 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD--HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 44566677777778888888888888776422221 236667777777788888888877776642 232 333444
Q ss_pred HHHHHh
Q 003937 556 MVDLLG 561 (785)
Q Consensus 556 li~~~~ 561 (785)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.77 Score=47.32 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 569 AYNFIENMPLEPD----VVAWGSLLSA--CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 569 A~~~~~~~~~~p~----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
-+.++++.++.|- ...-|.|..| +..+|++.++.....=+.++.| ++.+|..++-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3456666666653 3456777777 5789999999999888899999 9999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.055 Score=54.42 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh----hHHHHHHHHHHHcCChHHHHH
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET----VSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~ 500 (785)
++.+.|..+|+...+. ++.+...+...++.+.+.|+.+.|+.+|++.... |.. ..|...+.-=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344455555554443 3444555556666666666666666666655322 222 256666666666666666666
Q ss_pred HHHHHHH
Q 003937 501 LFERMLE 507 (785)
Q Consensus 501 ~~~~m~~ 507 (785)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.019 Score=52.94 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=74.5
Q ss_pred HHHHHhc--ccCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc------------
Q 003937 467 RRVFNLI--HWRQETVSWTSMIVALAQH-----GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG------------ 527 (785)
Q Consensus 467 ~~~~~~~--~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 527 (785)
...|+.. ..+ |..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k-~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAK-DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccc-cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3445554 334 777788888877654 56666777788899999999999999999886542
Q ss_pred ----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 528 ----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 528 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 123568899999986 89999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.51 Score=52.27 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=110.8
Q ss_pred HHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHH----HHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhc
Q 003937 82 WNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIV----TYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTA 157 (785)
Q Consensus 82 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 157 (785)
.-.-|..+.+...++.|..+-..-.. |...-..+.. -+-+.|++++|...|-+-... +.| +.+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34456667777777888777654432 2222233333 345679999999888776532 233 235555555
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHhh
Q 003937 158 LGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVS--SWNVVVSLHIHSGRLDLARAQFD 235 (785)
Q Consensus 158 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 235 (785)
......--.+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .+.. -....+..+.+.+-+++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55566666777888888854 44556789999999999999888887776 3322 24455666666666666666655
Q ss_pred hcCCCCcccHHHHHHHHhhCCCchHHHHHHHHh
Q 003937 236 QMIERDVVTWNSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 236 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (785)
+... +......+ +-..|++++|++.+..+
T Consensus 488 k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4422 33333333 33567899999998887
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.025 Score=46.14 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccC--------chHHHHHHHHHHHHhCCCCchHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGP-KPNNYTLSAMLSVSSSLA--------SLDHGKQIHASALRSGEASSLSV 449 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 449 (785)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.++.. ++-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999998876543 24456677888888888888888
Q ss_pred HHHHHHHHHh
Q 003937 450 SNALITMYSK 459 (785)
Q Consensus 450 ~~~li~~y~~ 459 (785)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0043 Score=47.12 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=52.2
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHK-NLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 613 (785)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888877 45564 668888888889998 79999999999999887
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.057 Score=59.03 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 598 LDLGKIAAEKLLLI--EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 598 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.+.+...+++...+ +|.++..|..++-.+...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34556666666553 67778889999888888999999999999998765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0084 Score=58.27 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=82.5
Q ss_pred CCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 547 KPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR-VH--KNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~-~~--g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
+-|...|--|...|.+.|+.+.|..-|.+. .+.| ++..+..+..++. +. ....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445778888888888888888888888777 4444 4556666666632 22 24578999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
|...+...|++.+|...|+.|.+....-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999876543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.027 Score=58.89 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQE-----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
+.+.+......+++......+++++..++-+....|+ ..|..++|..|...|..+++++++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455555566777777777788889998887764432 23456999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
|+.+++.+.+.|++..|.++...|.. .....+..++.--+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988875 44445555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0048 Score=49.05 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHH
Q 003937 492 HGLGEEAIQLFERMLELGI-KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 569 (785)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888877432 12334455567777888888888888776 21 2222 23333446677777777777
Q ss_pred HHHHHh
Q 003937 570 YNFIEN 575 (785)
Q Consensus 570 ~~~~~~ 575 (785)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.99 Score=45.54 Aligned_cols=244 Identities=15% Similarity=0.149 Sum_probs=161.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 388 EQNGLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
.-.|++++|.+-|+.|... |.. ..+..+.-...+.|+-+.++++-+..-..- +.-.....++++..+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3467888888888887642 221 123333334456677777776665554332 2224556788888999999999
Q ss_pred HHHHHHhcccC----CChhH--HHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHH
Q 003937 466 ARRVFNLIHWR----QETVS--WTSMIVALA---QHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 466 A~~~~~~~~~~----p~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 535 (785)
|+++.+.-... +++.- -..|+.+-+ -..+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 99999865321 24332 223333322 13356667766666665 788876 44455568999999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAY----NFIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
+++.+-+ ..|.+..+... .+.|.|+..... +-++. ++|| ..+-.+...+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9998875 45666655433 345666543221 12233 4565 55667777788899999999999999999
Q ss_pred hCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 003937 611 IEPDNSGAYSALCNLYSSC-GKWEDAANIRKSMKYV 645 (785)
Q Consensus 611 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 645 (785)
..| ....|..|.++-... |+-.++..++.+..+.
T Consensus 358 ~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999 677899999987555 9999998888776543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=53.71 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+-+.-+++|++.|-.|+.... ...|+-.|++.+|.++|.. .|.+ |.-+.||.....++.|.+++..-.
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 344556788888988987654 3456777888888887743 3432 344556666666666666654321
Q ss_pred cC--C----ChhHH-------HHHHHHHHHcCChHHHHHHHH------HHHHCCCCC---CHHHHHHHHHHhhccCCHHH
Q 003937 475 WR--Q----ETVSW-------TSMIVALAQHGLGEEAIQLFE------RMLELGIKP---DHITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 475 ~~--p----~~~~~-------~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~ 532 (785)
.+ . ....| .+-...+...|+.++|+.+.- -+.+-+-+. +..+...+..-+.+...+.-
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 00 0 01111 223344556677777766532 122222222 23355555555566677778
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-LEPDVV 583 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 583 (785)
|-++|.+|-. ...++++....|++++|..+-++.| +.||+.
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 8888887753 3568889999999999999999985 555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.024 Score=56.76 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=91.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhh---hcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMK---NVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-------PL-EPDVV 583 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 583 (785)
.|..|...|.-.|+++.|+..++.-. +.+|-.. ....++.+.+.+.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56667777777889999988776432 2234322 2445677888888889999998887764 21 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLI----E--PDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+.-+|.+.|....+++.|+..+.+-+.+ + -....++.+|+++|...|.-++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667888888888899999888776553 1 1244588999999999999999998877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=52.06 Aligned_cols=99 Identities=12% Similarity=0.200 Sum_probs=73.6
Q ss_pred HHHHHHHhc--CCCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----------
Q 003937 364 PARRIFDSL--RDRDVVAWTAMLVGYEQN-----GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSL----------- 425 (785)
Q Consensus 364 ~A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------- 425 (785)
.-...|+.. ..++-.+|..+|..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 457788888888888754 66777777888899999999999999999887542
Q ss_pred -----CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 426 -----ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 426 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
.+-+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677788888888888888888888877766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.37 Score=47.13 Aligned_cols=170 Identities=17% Similarity=0.089 Sum_probs=107.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC-CChh-H---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 003937 453 LITMYSKAGNINAARRVFNLIHWR-QETV-S---WTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACT 525 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~~-p~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 525 (785)
....+.+.|++++|.+.|+.+... |+.. . .-.++.+|.+.+++++|+..|++..+ ..|+. +-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 344456789999999999988643 3332 2 23455678889999999999999988 45544 34444444433
Q ss_pred c--cC---------------CH---HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003937 526 H--GG---------------LV---EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW 585 (785)
Q Consensus 526 ~--~g---------------~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 585 (785)
. .+ +. .+|...|+.+. +.|=.+.-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 11 22333344333 33333334455555444431 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 586 --GSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 586 --~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
-.+..-|.+.|.+.-|..-++.+++--|+.+ .+...+..+|.+.|..++|..+.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1334447888999999999999999877644 567788999999999999999887654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0045 Score=46.81 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 563 AGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|++++|.++|+++ ...| +...+..+...|...|++++|...++++...+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444555444444 2223 33444444445555555555555555555555543
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.42 Score=46.78 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=32.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL--GIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
..-|.+.|.+..|+.-|+.+.+. +-+........+..++...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34466677777777777777663 11112234555666666677777666665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.043 Score=49.08 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-----YVGVKKT 650 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 650 (785)
....++..+...|+++.|...+++++..+|-|...|..++.+|...|+..+|.++++.+. +.|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 456677778899999999999999999999999999999999999999999999999985 4577654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=48.19 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-----hHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS-----LSVSNAL 453 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l 453 (785)
.-+.++..+...|.+.-.+..+++.++...+-+....+.+.+.-.+.|+.+.+...++...+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666666777777888888888766556666677777777788888888888887776533333 3333333
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYV 518 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 518 (785)
...|.-++++.+|...|+++... .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34456677888888888887644 2555556555555566888899999999988 456554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.068 Score=47.72 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=90.0
Q ss_pred cCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Cch
Q 003937 543 VHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSG 617 (785)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~ 617 (785)
+..+.|++..--.|...+.+.|+..||...|++. .+--|......+..+....++...|...++.+.+..|. .+.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456788888888999999999999999999988 34557888888888889999999999999999998875 567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...+...|...|++++|+..|+...+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 7889999999999999999999998765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.067 Score=47.19 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHG 527 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 527 (785)
-++...+...|++++|.++|+.+.. .-+..-|-.|..++-..|++++|+..|..... +.||. ..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence 3455556778999999999987642 22566788888888889999999999999888 45654 5777888888899
Q ss_pred CCHHHHHHHHHHhhh
Q 003937 528 GLVEQGQRYYNMMKN 542 (785)
Q Consensus 528 g~~~~a~~~~~~m~~ 542 (785)
|+.+.|++.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988775
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=60.20 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...|+.+..+|...|++++|...++++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555442 255555555555555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.2 Score=46.93 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
+.-+...|+..+|.++-.+.+.. |-..|---+.+++..+++++-+++-+.+. + ++-|.-...+|.+.|+.++|
T Consensus 691 v~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHH
Confidence 33445567777777777766555 66666666777777777766555444332 1 45566667777777777777
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.+++.+.. |. .-.+.+|.+.|++.+|.++--+
T Consensus 764 ~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 764 KKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 77765432 11 1456777777777777665443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.05 Score=46.15 Aligned_cols=86 Identities=20% Similarity=0.025 Sum_probs=56.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 003937 557 VDLLGRAGLLQEAYNFIENM---PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD---NSGAYSALCNLYSS 628 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 628 (785)
..++-..|+.++|..++++. +.... ...+-.+.+.++..|+.++|..++++...-.|+ +......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555666777777766665 22221 224455666677888888888888888777676 45555666677788
Q ss_pred cCChHHHHHHHHHH
Q 003937 629 CGKWEDAANIRKSM 642 (785)
Q Consensus 629 ~g~~~~a~~~~~~m 642 (785)
.|+.++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.52 Score=47.55 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HhHHHHHHHHH
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI-GDIGPARRIFDSLRD-----RD----VVAWTAMLVGY 387 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~ 387 (785)
..+..|.+.|++..|-+.+. .+...|-+. |++++|...|++..+ .. ...+..+...+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~-------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLK-------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHH-------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34556667776666644443 334444444 566666666655432 11 22445566677
Q ss_pred HHcCChhHHHHHHHHHHHcC
Q 003937 388 EQNGLNKDAVELFRSMVREG 407 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g 407 (785)
.+.|++++|+++|++.....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHh
Confidence 77788888888887776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.4 Score=44.43 Aligned_cols=124 Identities=10% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHhc-CCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHH
Q 003937 454 ITMYSKA-GNINAARRVFNLIH----WRQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-----DHI-TYV 518 (785)
Q Consensus 454 i~~y~~~-g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~ 518 (785)
...|... |++++|.+.|++.. ...+ ...+..+...+.+.|++++|+++|++....-... +.. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3444444 55666655555432 1101 1234556667788888888888888877643221 111 233
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhc-CCCCCC--chhHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNV-HKIKPT--PSHFASMVDLLGR--AGLLQEAYNFIENMP 577 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 577 (785)
..+-++...|++..|.+.++..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3333556678888888888876532 123222 2334455666533 235666777777663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.069 Score=45.28 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLG 561 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 561 (785)
+..++-..|+.++|+.+|++....|+.... ..+..+.+.+...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667788899999999999888876653 3677777888888999999998888775321101 1122222344667
Q ss_pred hcCCHHHHHHHHHh
Q 003937 562 RAGLLQEAYNFIEN 575 (785)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (785)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888776644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.041 Score=54.29 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALC 623 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 623 (785)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666655 222332 2444556666777777777777777777666543 3444456
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 003937 624 NLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 624 ~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+|...|++++|..+++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.01 Score=40.07 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788889999999999999999999999999988777653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.9 Score=44.55 Aligned_cols=133 Identities=13% Similarity=0.164 Sum_probs=75.1
Q ss_pred hcCChhHHHHHhhcCCC---C------ChhhHHHHHHHHHccCChhHHHHHHhhCCCC-CccHHHHHHHHH--HhCCChh
Q 003937 60 KTESISYAKKVFDEMPV---K------TLCSWNTILSAYAKQGRLDLACEVFNLMPNR-DSVSWTTIIVTY--NEIGRFK 127 (785)
Q Consensus 60 ~~g~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~ 127 (785)
+.+++.+|.++|.++-+ . ..+.-+.+|++|...+ ++.....+....+. ....|-.+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 44555555555555431 1 1223445556655433 33333333333321 133455555444 3567888
Q ss_pred HHHHHHHHhHHC--CCCCC------------hhhHHHHHHHHhccCChhHHHHHHHHHHHhCC----CCChhHHHHHHHH
Q 003937 128 NAIRMFVEMVQD--QVLPT------------QFTVTSVLASCTALGDLSAGKKVHSFVVKTGL----SGCVNVTNSLLNM 189 (785)
Q Consensus 128 ~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~ 189 (785)
+|++.+....+. +..|. -.-=+..+.++...|++.+|+.+++++...=+ ..+..+||.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888888777654 32221 11113345667788999999988888876544 3788888888888
Q ss_pred HHhC
Q 003937 190 YAKV 193 (785)
Q Consensus 190 ~~~~ 193 (785)
+++.
T Consensus 177 lsrS 180 (549)
T PF07079_consen 177 LSRS 180 (549)
T ss_pred HhHH
Confidence 7763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.36 Score=45.80 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCC----CCCCchhHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHK----IKPTPSHFASMV 557 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li 557 (785)
-+.++..+.-+|.+.-.+.++.+.++..-+-+.+-...+.+.-.+.|+.+.|..+|+...+..+ +.-...+...+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3566777777888888899999999865555667778888888899999999999997765322 222222233333
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 558 DLLGRAGLLQEAYNFIENMPL-EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
..|.-+.++.+|...+.+.+. +| |++.-|+-.-...-.|+...|.+..+.+.+..|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 455566677788877777742 23 334334333333445777788888888888877543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.25 Score=52.72 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=92.3
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC---------C
Q 003937 38 RIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN---------R 108 (785)
Q Consensus 38 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~ 108 (785)
.+.+.|-.|+... +...++-.|.+.+|.++|.+--.. |.-+.+|.....++.|.++...-.. +
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE-----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch-----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3455565555443 344566778888888888765432 2334455555555666555433211 0
Q ss_pred -----CccHHHHHHHHHHhCCChhHHHHHHHH------hHHCCC---CCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 109 -----DSVSWTTIIVTYNEIGRFKNAIRMFVE------MVQDQV---LPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 109 -----~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
|+.---+-...+...|+..+|.++.-+ +.+-+- ..+..+...+..-+.+...+..|-++|..|-..
T Consensus 697 A~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 697 ADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred HHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 111111222334445555555544321 111111 112223333333334444455555555443221
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhh
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQ 254 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~ 254 (785)
.+++++....+++++|.++-++.++--...|.....-++...++++|.+ +|.+
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk------------------Afhk 829 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK------------------AFHK 829 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH------------------HHHH
Confidence 3445555555556666555555554333333333444444444444443 4455
Q ss_pred CCCchHHHHHHHHh
Q 003937 255 NGYDFEALGMFANM 268 (785)
Q Consensus 255 ~g~~~~A~~l~~~m 268 (785)
.|+-.||..+++++
T Consensus 830 AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQL 843 (1081)
T ss_pred hcchHHHHHHHHHh
Confidence 66666777776666
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.021 Score=43.84 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
..|.+.+++++|.++++++ ...|+ ...|......+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678889999999999888 55564 66777778888999999999999999999999766543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.055 Score=54.36 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=84.3
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHH----hCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhc-------ccC-CChh
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALR----SGEA-SSLSVSNALITMYSKAGNINAARRVFNLI-------HWR-QETV 480 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~-p~~~ 480 (785)
.|..+-+.|.-.|+++.+...|+.-.. .|-. .....+..|.+.+.-.|+++.|.+.++.. ..+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556667888888888775443 2322 12344566777788888999988888743 233 1334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLE----LG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+.-+|...|.--.++++|+.++.+-+. .+ .--....+.+|..++...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888877888899888876443 11 12233578888889999998888887765443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.92 Score=46.72 Aligned_cols=160 Identities=20% Similarity=0.147 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCChh-H-----HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWRQETV-S-----WTSMIVALAQ---HGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~p~~~-~-----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.|+-.|....+++.-.++.+.+..-|+.. . --...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777888888888888876554221 1 1122334555 7888899999888766666777778777766
Q ss_pred Hhhc---------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH----HHHHHH---Hh----CC-C--C
Q 003937 523 ACTH---------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ----EAYNFI---EN----MP-L--E 579 (785)
Q Consensus 523 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~----~~-~--~ 579 (785)
.|-. ....++|...|.+.- .+.|+..+--.++-++...|... +..++- .. -+ . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 234677777776553 34566544434444454555322 222222 11 11 1 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 580 PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.|-..+.+++.++.-.|+.+.|.++++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34455688999999999999999999999998774
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.022 Score=44.45 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLI----EPD---NSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777788888888888777753 222 13467788888888888888888887764
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=5 Score=44.95 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHH----HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 215 NVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMI----AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
..-+..+++...++.|..+-+.-.. +..+-..+. .-+.+.|++++|...|-+-+ .-+.|. .++.-+-.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH-----HHHHHhcC
Confidence 3445555666666666665554322 222222222 33456788888887776552 122332 24444445
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFD 370 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 370 (785)
......--.+++.+.+.|+..... -+.|+.+|.|.++.++-.++.+... .+.-..-.-..+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 555555556666677777644333 3668888888888888777777655 22111112333444444455555554444
Q ss_pred hcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 003937 371 SLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSM 403 (785)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 403 (785)
.... +...... .+-..+++++|++.+..|
T Consensus 488 k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3332 2222222 223456677777776655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=5.4 Score=44.08 Aligned_cols=324 Identities=14% Similarity=0.125 Sum_probs=171.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh---HHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 003937 284 TLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV---EIAQKIVEQSGISYLNVIAFTTLLDGYIKIG 360 (785)
Q Consensus 284 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 360 (785)
+++-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+..+-+++...-...++|..+..--...|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444444555555555544433221122 45555555555555322 2222333334443234567777777777777
Q ss_pred CHHHHHHHHHhcCCC--------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHH
Q 003937 361 DIGPARRIFDSLRDR--------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGK 432 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 432 (785)
+.+-|..+.+.=+.. +..-+...+.-..+.|+.+-...++..|.+. -+...|...+ .+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhhh
Confidence 888888777654431 2223344455556666666666665555432 1111111111 1222333
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh-c-c----cCCChhHHHHHHHHHHHcCC---hHHH-----
Q 003937 433 QIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL-I-H----WRQETVSWTSMIVALAQHGL---GEEA----- 498 (785)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~-~----~~p~~~~~~~li~~~~~~g~---~~~A----- 498 (785)
.++.+..+..-. ..|-+.|-. ++...+...|.. - . ..+-.........++++... .++|
T Consensus 593 ~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDR------ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhch------hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 344433332100 112222222 222222222211 0 0 00111222333344444332 1122
Q ss_pred --HHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 499 --IQLFERMLE-LGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 499 --~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
+++.+.+.. .|..-...|.+-.+.-+...|...+|.++-.+.+ .||...|---+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 122222221 2333444466666777888899999988876654 37888888888899999999998888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 576 MPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 576 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
+. .+.-|.-+..+|.+.|+.++|...+-+.-.+. -...+|.+.|++.+|.+.--
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 63 24556678889999999999998877653321 56788999999999987643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=5.1 Score=46.76 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhH--HHHHHHHHHHcCChhH
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-DVVA--WTAMLVGYEQNGLNKD 395 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~--~~~li~~~~~~g~~~~ 395 (785)
-.-+|.++|+.++|++.++. +|++.+|..+-.++... |... -..|+.-+...+++-+
T Consensus 958 Aal~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence 34467888888877665544 44777777777766653 3222 2456666666777766
Q ss_pred HHHHHHHHH
Q 003937 396 AVELFRSMV 404 (785)
Q Consensus 396 A~~~~~~m~ 404 (785)
|-++..+-.
T Consensus 1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHh
Confidence 666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.28 Score=48.47 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=53.7
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCc----hhHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTP----SHFASMVDLLGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~ 595 (785)
.+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+ |..| ....|..+...+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 34455556655555555422 221 23445556666666666666666665 2112 133444455567788
Q ss_pred CCHHHHHHHHHHHHhhCCCCc
Q 003937 596 KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~ 616 (785)
|+.+.|...++++++..|++.
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCH
Confidence 899999999999988888654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.029 Score=43.74 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-------P-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
|+.+...|.+.|++++|++.+++. + -.|+ ..+++.+...+...|+.++|+..+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444445555555555555544443 1 1122 446677777777888888888887777653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=43.14 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 003937 544 HKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 544 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~ 595 (785)
..+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 345567777777777777777777777766554 4444566777777665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=51.00 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..+++.|...+.+.+++..|++..+++++++|+|.-....-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346677777788999999999999999999999999999999999999999999999999976
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=4.9 Score=41.59 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=100.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh-HHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH-FAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~ 555 (785)
-...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||... -+-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34567778887777777889999999999988 5566778888887554 57788888888765542 244433 345
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 556 MVDLLGRAGLLQEAYNFIENM--PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.++-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|++..+..+-+++.++-|+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667778889999999999865 22333 4578888888888899999999989998888853
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.26 Score=41.31 Aligned_cols=89 Identities=21% Similarity=0.201 Sum_probs=72.7
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCh
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS----GAYSALCNLYSSCGKW 632 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 632 (785)
+++..|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++++++.-+.. ..|+--+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567889999999988877 3334 678899999999999999999999999999753222 2577788889999999
Q ss_pred HHHHHHHHHHHhCCC
Q 003937 633 EDAANIRKSMKYVGV 647 (785)
Q Consensus 633 ~~a~~~~~~m~~~g~ 647 (785)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998877665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.8 Score=41.19 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C----CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003937 353 LDGYIKIGDIGPARRIFDSLRD--R----DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
...+.+.|++++|...|+.+.. | -..+.-.++.++.+.|++++|...|++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566666666666543 1 1223445566677777777777777776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.94 E-value=2 Score=36.37 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
+.-.|..++..++..+.... .+..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34466677777777776652 12222333332222223334445555554432222 23445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
...-+-.++ .+......-++.....|.-++-.+++..+...+..++....-++++|.+.|+..++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444443 223334556777888899898888888888655448889999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.9 Score=37.98 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL 529 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 529 (785)
.++..+.+.+........++.+..+ .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444455555555555544222 23344555666665543 2333333332 2233444456666666666
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003937 530 VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFIENMPLEPDVVAWGSLLSACR 593 (785)
Q Consensus 530 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 593 (785)
++++..++..+.. +...++.+... ++.+.|.+++.+-. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 6666666655432 22233333333 66666777666532 4556666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.6 Score=39.06 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=94.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhc
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR-QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTH 526 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~ 526 (785)
...+...|++++|.+.|+.+..+ |+ ....-.++.++-+.|++++|...|++.++. -|+.. -+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 34456778888888888887533 22 224556677888888999999999888873 45432 23333333221
Q ss_pred c-------------CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 003937 527 G-------------GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW--GSLLSA 591 (785)
Q Consensus 527 ~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~ 591 (785)
. +...+|...|+. ++.-|=.+....+|...+..+. +...- -.+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1 112233333333 4444444445555555544441 11111 123445
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 636 (785)
|.+.|.+..|..-++.+++.-|+.+. +...|+.+|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78899999999999999999886543 5677888899999888544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.38 Score=41.29 Aligned_cols=95 Identities=6% Similarity=0.108 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
..++.+++.++++.|+++....+++..=.- |+ .+-...+. --....+.|+..+..+++.+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI-~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGI-DV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCC-CC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 456677777777778777777777654100 00 00000000 01122356777888888888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
.|++..|.++.+...+.++++-+...|..|+.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888777887777777777665
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.85 Score=47.82 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH---
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ--- 567 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--- 567 (785)
+..+.+.-+++-++.++ +.||..+--.++ +-..+..+.++.+++++..+. | . ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhhccc
Confidence 34556666677777776 678776443333 334455678888888877651 1 0 0011111000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 568 EAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 568 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.+..-..+|-..+=..|...+++.|+.++|.+.++.+++..|. +......|+..|...+++.|+..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111112222333455666778889999999999999887664 4467888999999999999999998887655
Q ss_pred CCccCCc
Q 003937 646 GVKKTQG 652 (785)
Q Consensus 646 g~~~~~~ 652 (785)
.+.+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 4444433
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=4.9 Score=38.59 Aligned_cols=195 Identities=22% Similarity=0.214 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
..........+...+.+..+...+..... ......+..+...+...+++.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34455566666777777777777665532 12444555666666667777777777777776433331 12222222
Q ss_pred -HhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003937 523 -ACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD--VVAWGSLLSACRV 594 (785)
Q Consensus 523 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 594 (785)
++...|.++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67777888888888877643 222 2333333444456677888888877776 33333 5667777777788
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888865556666777776777788888777776543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=46.23 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhhc---------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 495 GEEAIQLFERMLE-LGIKPDHI-TYVGVLTACTH---------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 495 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
.+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...+. -.-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 5678888888882 22677764 44433332211 22344555555555441 123455555566666777
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH--HHHHHHhcCChHHHHHHH
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA--LCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~ 639 (785)
|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-.. .++.|+..+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 7788888888887 56776 5566666666777888888888888888888865443333 333465554 55666554
Q ss_pred H
Q 003937 640 K 640 (785)
Q Consensus 640 ~ 640 (785)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.68 Score=48.45 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHh---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003937 529 LVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLG---------RAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK 596 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 596 (785)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 346677788877744456666 334444333221 122445666666665 4555 6777777777777888
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.+.|...++++..++|+.+.+|...+..+..+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.20 E-value=10 Score=41.32 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc------chHHHHHHHHH----hcCChHHHHHHHHHhCCCCCchHhHH
Q 003937 281 LASTLSACANLEKLKLGKQIHAYIIRTEFDATG------PVGNALISCYA----KVGGVEIAQKIVEQSGISYLNVIAFT 350 (785)
Q Consensus 281 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~~ 350 (785)
+..+++..+=.||-+.|.+.+....+.+-.-.+ ..|...+..++ ...+.+.|.++++.+..+.|+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 445566666667777777766665543211111 12233333332 24577889999999999999776665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHhcCCC-------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 003937 351 TL-LDGYIKIGDIGPARRIFDSLRDR-------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVS 422 (785)
Q Consensus 351 ~l-i~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 422 (785)
.. .+.+...|++++|.+.|+..... ....+--+...+.-..++++|.+.|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 54 57788899999999999975531 22344455666788899999999999998753 34555666666555
Q ss_pred -hccCch-------HHHHHHHHHHHH
Q 003937 423 -SSLASL-------DHGKQIHASALR 440 (785)
Q Consensus 423 -~~~~~~-------~~a~~~~~~~~~ 440 (785)
...++. ++|.+++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 344555 666777666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.51 Score=46.25 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhh-HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHH
Q 003937 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFT-LASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNA 318 (785)
Q Consensus 240 ~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (785)
.|...|-.|-..|.+.|+...|..-|....+-.|-.|+... |...+-.-+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~-------------------------- 207 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ-------------------------- 207 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc--------------------------
Confidence 37888999999999999999999999888666665555332 111111111111
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHH
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLV 385 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 385 (785)
...++..+|++....+| |+.+...|...+...|++.+|...|+.|.+ |.-..|..+|.
T Consensus 208 ---------~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 208 ---------MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ---------ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 23445555666555444 455566666666666677777776666654 33334444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.56 Score=40.73 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hHHHHHHH
Q 003937 560 LGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-AYSALCNL 625 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~ 625 (785)
..+.|++++|.+.|+.+ |..| ....-..|+.++.+.++++.|...+++.+++.|.++. -|.....+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34667777777777776 3333 2345566788888888888888888888888887663 33333333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.33 Score=43.36 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHIT 516 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 516 (785)
..++..+...|++++|..+.+.+. .+-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455666666777777777776653 222555677777777777777777777766542 366665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.39 Score=50.09 Aligned_cols=62 Identities=13% Similarity=0.031 Sum_probs=43.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666677777777777777777664 556653 34777777777777777777777777775
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=9.3 Score=39.31 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHhcc-c-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccC
Q 003937 456 MYSKAGNINAARRVFNLIH-W-----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGG 528 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 528 (785)
...+.|++..|.+.+.+.. . +|+...|........+.|+.++|+.--++... +.|.-+ .|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776542 1 13444455555566667777777776666654 333322 3333334455566
Q ss_pred CHHHHHHHHHHhhh
Q 003937 529 LVEQGQRYYNMMKN 542 (785)
Q Consensus 529 ~~~~a~~~~~~m~~ 542 (785)
.|++|.+.+++..+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.75 E-value=7.9 Score=40.06 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---C----HhHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 353 LDGYIKIGDIGPARRIFDSLRDR---D----VVAWTAMLVGYEQ---NGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
+-+|-...+++...++.+.+... + ...-....-++.+ .|+.++|++++..+......++..||..+...
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33455555667777777666542 1 1111122334445 67788888888776666666666676554433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.55 Score=45.08 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=77.1
Q ss_pred HHHHHhcc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC----------
Q 003937 467 RRVFNLIH--WRQETVSWTSMIVALAQH-----GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL---------- 529 (785)
Q Consensus 467 ~~~~~~~~--~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 529 (785)
++.|.... .+ |-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+...
T Consensus 54 e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 44555554 44 788888888887654 4466666778899999999999999999998765432
Q ss_pred ------HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 530 ------VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 530 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
-+=++.++++|.. +|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2447889999985 99999999999999999999854
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.16 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.71 Score=44.37 Aligned_cols=101 Identities=10% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHHhcC--CCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC---------
Q 003937 363 GPARRIFDSLR--DRDVVAWTAMLVGYEQN-----GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA--------- 426 (785)
Q Consensus 363 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--------- 426 (785)
-..++.|.... ++|-.+|-+++..|... +..+-.-..++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677666 57888888888877654 556666677888999999999999999998875432
Q ss_pred -------chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 003937 427 -------SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNI 463 (785)
Q Consensus 427 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 463 (785)
+-+.+..++++|..+|+-||..+-..|++++++.|-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999887754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.5 Score=43.83 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCC----CCchhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIK----PTPSHFASMVDLLGRAGLLQEAYNFIENM-------PLEPDVVAW--- 585 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~--- 585 (785)
+..|....+.++++.+.|+...+...-. ....++..|...|++..+.++|.-+..+. +++-=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3334444445555555555544311111 11334555556666666655554433332 211101112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 003937 586 --GSLLSACRVHKNLDLGKIAAEKLLLI--EPDNSG----AYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 586 --~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
-.|.-+++..|.+..|.+..+++.++ ...|.. ....++++|-..|+.|.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12233455666666666666665542 222222 233556666666665555544443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.1 Score=42.29 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH----HHhhcCCHH
Q 003937 492 HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD----LLGRAGLLQ 567 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~ 567 (785)
+|+..+|-..++++++. .+.|...+.-.-.+|...|+.+.-...++++.- ...|+...|..+=. ++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444455554442 233334444444455555555555555544432 22344333332222 223455555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 568 EAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 568 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
+|++.-++. .+.| |.-.-.+........|+..++.+..++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444 3333 233333444444455555555554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.36 E-value=16 Score=40.83 Aligned_cols=100 Identities=7% Similarity=0.036 Sum_probs=66.0
Q ss_pred HHHHHhCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHH
Q 003937 187 LNMYAKVGDEMMAKAVFDGMRLK-----NVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEA 261 (785)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A 261 (785)
|+-+.+.+.+++|...-+..... -...+...|..+.-.|++++|-.+.-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45556677788888777655522 1236778888888888888888888888888888888888888877776554
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 262 LGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 262 ~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
..++ ....-..+...|-.+|..+..
T Consensus 443 a~~l----Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYL----PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccC----CCCCcccCchHHHHHHHHHHH
Confidence 3332 221112234455556665544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.26 Score=30.72 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56667777888888888888888888888854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.2 Score=42.55 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..+.-.|.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 3567788888888888776541 10 111111122222111 1123455667778888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA-ANIRKSMK 643 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 643 (785)
.+|++..++. .++| |+-..--=..+|...|+++.|+..|+++++++|+|..+-.-|+.+-.+..+.++. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877666 4444 5556666677888999999999999999999999988888888877776666655 77888886
Q ss_pred h
Q 003937 644 Y 644 (785)
Q Consensus 644 ~ 644 (785)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.03 E-value=8.4 Score=36.63 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=107.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCCh-hHHHHHHHHHHHcCChHH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET-VSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~ 497 (785)
-.++....+++++..-+....+. .+.+...|. ....++.|.-+.+++..-|.+ ..|+.-...|..+|.++.
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34555566666666655444321 111111111 122344444555555433232 345666677888888777
Q ss_pred HHHHHHHHHH--CCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 498 AIQLFERMLE--LGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 498 A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
|-..+++.-+ +++.||.. .|.--+......++...|.+++. .....|.+..+++||-..|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g----------------k~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG----------------KCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH----------------HhhhHhhhhHHhhHHHHHH
Confidence 7666665432 23566653 44444444444444444444443 3445667777777776666
Q ss_pred HhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 574 ENMP-----L--EPDV-VAWGSLLSACRVHKNLDLGKIAAEKLLL----IEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 574 ~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
.+-. + -|+. ..+-+.|-.+.-..++..|+..++.--+ ..|++..+...|+.+| ..|+.|++.++..
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 5541 1 1222 1233344444555678888888887655 3566777788888777 6688888776643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=9.8 Score=36.35 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=128.8
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-hhHHHHHHH-H
Q 003937 413 YTLSAMLSVSSSLASLDHGKQIHASALRS-GEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QE-TVSWTSMIV-A 488 (785)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-~~~~~~li~-~ 488 (785)
..+......+...+.+..+...+...... ........+..+...+...+....+.+.+...... ++ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444455555555555555444442 23334445555666666777778888888766532 12 222333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhc
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKP----DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRA 563 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 563 (785)
+...|+.+.|...|.+... ..| ....+......+...+..+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998855 344 223444444456778889999999888875 2233 356677788888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
+..++|...+... ...|+ ...+..+...+...+..+.+...+++.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999888877 34454 445555555555777899999999999998885
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.50 E-value=7 Score=34.37 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+...-..++..+...+.......+++.+...+ ..+....+.++..+++.+ ..+....+.. .++.......+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445667888888888999999999988876 355667788888887653 3444455442 12233344577
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH-KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..+.+.+.++++.-++.+++...+ .+..+..+ ++.+.|.+.+.+ +.++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888888888763222 22223333 778888887775 235566766666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=14 Score=37.76 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHhcc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 455 TMYSKAGNINAARRVFNLIH-WRQETVSWTSMIVALAQHGLGEEAIQLFERMLE-LGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
..|.+.|++.++-.+++.+- ..|.+..|... .+++.|+ .++.-+++... ..++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 34555555555555555542 22333322221 1223332 22222222221 1145554 34555555555666666
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHHHhC
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFIENM 576 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 576 (785)
.|..--+... ...|....|..|.+.-... |+-.++...+.+.
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5555444433 2456666666666554433 6666666666555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.15 E-value=4.7 Score=43.29 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHhhcCCCcchHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 003937 21 QSNLKSRNPFVGKLVHAR-IIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLAC 99 (785)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 99 (785)
+...-.++++.+....+. -+-.. .+....+.++..+-+.|-++.|.++-.. -..--....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHH
Confidence 444456777776555431 11111 2245588899999999999999987443 123445667899999999
Q ss_pred HHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC
Q 003937 100 EVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179 (785)
Q Consensus 100 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 179 (785)
+.-++.. +...|..|-....+.|+++-|.+.|.+... |..++-.+...|+.+.-.++.......|
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 9877665 566899999999999999999999988753 6666667777888888888877777766
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcC
Q 003937 180 VNVTNSLLNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~~~~m 206 (785)
-+|....++.-.|+.++..+++.+-
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2455555666667777777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.00 E-value=24 Score=39.51 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-CCcccHHHHHHHHhhCCCc
Q 003937 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-RDVVTWNSMIAGYSQNGYD 258 (785)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-~~~~~~~~li~~~~~~g~~ 258 (785)
..++..+|+.+.-.|++++|-.+.-.|-..+..-|---+..+...++......++-.-+. -+...|..++..+.. .+
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~- 469 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD- 469 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HH-
Confidence 345677777788888888888888888877777777777777777777665555544333 355678877777766 22
Q ss_pred hHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 259 FEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 259 ~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
..-|.+.++. ..++.+.-..++++.- ....+. .-+..+...|+..|...++++.|.+++-.
T Consensus 470 ---~~~F~e~i~~--Wp~~Lys~l~iisa~~------------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylk 530 (846)
T KOG2066|consen 470 ---VKGFLELIKE--WPGHLYSVLTIISATE------------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLK 530 (846)
T ss_pred ---HHHHHHHHHh--CChhhhhhhHHHhhcc------------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHh
Confidence 2223333122 2233332222222211 011110 11112233488899999999999998877
Q ss_pred hCCCC
Q 003937 339 SGISY 343 (785)
Q Consensus 339 ~~~~~ 343 (785)
.+...
T Consensus 531 lk~~~ 535 (846)
T KOG2066|consen 531 LQDKD 535 (846)
T ss_pred ccChH
Confidence 66654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.90 E-value=5.2 Score=39.30 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=77.9
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSL---LSACRVHKNLD 599 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 599 (785)
.....|+..+|...|+.... -.+-+...--.|...|...|+.++|..++..+|.+-...-|..+ |....+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566777777777777664 12223455566778888888888888888888654433333332 22222222222
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.. .+++-..-+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 233334568999999999999999999999998877766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.40 E-value=24 Score=38.31 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=126.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
++...|..-++.-.+.|+.+.+.-+|++.... -=..-|-..+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888999999999999887432 1223455555555556888888888777666433333333332333
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----H
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAY---NFIENM-PLEPDVVAWGSLLSA-----C 592 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~ 592 (785)
-+...|+.+.|..+++.+.+. + |+ +..-.--+....+.|..+.+. +++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 466789999999999999873 3 55 333334466778899998887 555444 222222222222221 4
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...++.+.|..++.++.+..|++...|..+++.....+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 566889999999999999999999999999999877764433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.6 Score=42.33 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...+...|+++.|...|..+.+-.|++ +.++.-|+.+..+.|+-++|..++++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455555566666666666655544432 34455555556666666666666666543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.9 Score=44.54 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCh---------hhHHHHHHHHHc----cCChh
Q 003937 31 VGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV-KTL---------CSWNTILSAYAK----QGRLD 96 (785)
Q Consensus 31 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~ 96 (785)
.+.-+|.-+++.= + .....+++..+-.|+-+.+.+++....+ +++ ..|..++..++- ....+
T Consensus 175 ~G~G~f~L~lSlL-P---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSLL-P---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHhC-C---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445555555431 2 2355677777777777777777766543 222 245555554443 45577
Q ss_pred HHHHHHhhCCC--CCccHHHHHH-HHHHhCCChhHHHHHHHHhHHCCC---CCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 97 LACEVFNLMPN--RDSVSWTTII-VTYNEIGRFKNAIRMFVEMVQDQV---LPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 97 ~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
.|.++++.+.. |+...|...- +.+...|++++|++.|++...... +.....+--+.-.+...+++++|...+..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888876 7777776554 344557889999999887653111 11222333444555566777777777777
Q ss_pred HHHhCCCCChhHHHHHH-HHHHhCCCh-------HHHHHHHhcCC
Q 003937 171 VVKTGLSGCVNVTNSLL-NMYAKVGDE-------MMAKAVFDGMR 207 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 207 (785)
+.+.. ..+..+|.-+. .+|...|+. ++|.++|.+++
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77654 22233333222 334455655 56666665554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=2 Score=42.53 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=92.0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCCHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL-EPDVVAWG----SLLSACRVHKNLD 599 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~ll~~~~~~g~~~ 599 (785)
..|...+|-..++++.+ ..+.|...+.-.=+++.-.|+.+.-...+++. |. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677777788888886 45667777777778888899999888888888 43 66664433 2233356789999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+|++..+++++++|.|.-+..++..++--.|+..|+.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.89 E-value=5.4 Score=42.80 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCC
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGL 494 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~ 494 (785)
...++.-+.+.|..+.|.++-..- ..-.+...++|+++.|.++-++.. +...|..|......+|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence 445555555666666665553221 233556677888888887766554 66688888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIE 574 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 574 (785)
.+-|.+.|++... |..|+-.|.-.|+.+.-.++-+.... .| -++.-...+.-.|+.++..+++.
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-RG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888877543 45555566667776666665554443 22 13334444455666666666666
Q ss_pred hCC
Q 003937 575 NMP 577 (785)
Q Consensus 575 ~~~ 577 (785)
+.+
T Consensus 427 ~~~ 429 (443)
T PF04053_consen 427 ETG 429 (443)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.71 E-value=20 Score=36.03 Aligned_cols=17 Identities=24% Similarity=-0.124 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHH
Q 003937 592 CRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~ 608 (785)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666643
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.62 E-value=9.9 Score=34.34 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=37.1
Q ss_pred cHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhc
Q 003937 244 TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTE 308 (785)
Q Consensus 244 ~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 308 (785)
.+..++..+...|++-+|+++.+.. .. .+...-..++.+..+.+|...--.++....+.+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4556677788888888888887764 21 222233456666666666666666666555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.48 E-value=6.8 Score=39.54 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccC------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCC-
Q 003937 463 INAARRVFNLIHWR------QETVSWTSMIVALAQHGL----GEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGL- 529 (785)
Q Consensus 463 ~~~A~~~~~~~~~~------p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~- 529 (785)
...|..+|+.|+.+ ++-.++..|+.. ..++ .+.+...|+.+.+.|+..+.. +...++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34566667666532 345555555544 2222 356777888888888777543 44444444433332
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+.++.++++.+.+ .|+++...+|..+.
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 3477788888876 68888888776553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.54 Score=29.92 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.14 Score=45.52 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=54.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003937 151 VLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLA 230 (785)
Q Consensus 151 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 230 (785)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777777788887776566778888888888888777788777774432 3334455555555555555
Q ss_pred HHHhhhc
Q 003937 231 RAQFDQM 237 (785)
Q Consensus 231 ~~l~~~~ 237 (785)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.85 E-value=9.3 Score=33.33 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=62.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPD---HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
....+.|++++|.+.|+.+... .+.. ...-..++.++.+.|++++|...++...+.+.-.|++ .|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3345567788888888777764 2221 2345566677777777887777777777644444443 244444443322
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 564 GLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
...+.+ |..+ ..+. ..+....|...|++++..-|++.
T Consensus 96 ~~~~~~---~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 1111 1111 12234578888888888888654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.61 E-value=21 Score=34.57 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHhcccC-C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc---c
Q 003937 458 SKAGNINAARRVFNLIHWR-Q-E---TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTH---G 527 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~---~ 527 (785)
.+.|++++|.+.|+.+..+ | + ..+--.++-++-+.+++++|+..+++.... -|+. +-|...|.+.+. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence 4578888998888888643 2 2 223344556677888899999988888773 3332 344444444432 1
Q ss_pred ----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003937 528 ----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW--GSLLSACRVHKNLDLG 601 (785)
Q Consensus 528 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a 601 (785)
.+...+.+-+..+.+...--|+.. -...|..-+.... |.... .++..-|.+.|.+.-|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHH
Confidence 122223333322221101112221 1112221111110 11111 1334457889999999
Q ss_pred HHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 602 KIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..-++.+++.-|+.+. .+..|..+|.+.|..++|.+.-+-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999987665443 566678889999999999988776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=2.4 Score=37.87 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 003937 457 YSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQ 534 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 534 (785)
+...|++++|..+|.-+. ..-+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 345667777777766543 12244456666666666667777777666655432 122233444455666666666666
Q ss_pred HHHHHhhh
Q 003937 535 RYYNMMKN 542 (785)
Q Consensus 535 ~~~~~m~~ 542 (785)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.19 E-value=15 Score=32.73 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=50.9
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENMP-LEPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
.-...++.+++..++..+.- +.|... .-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|-....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33455677777777766653 344422 22223345567788888888888773 23444444566666665554455
Q ss_pred HHHHHHHHHhhCC
Q 003937 601 GKIAAEKLLLIEP 613 (785)
Q Consensus 601 a~~~~~~~~~~~p 613 (785)
-....+++++..|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 5566666666555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.9 Score=42.47 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.++..++..+...|+.+.+...++++++.+|-+...|..|+.+|...|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777888888888899999999998888999999999999999999998888864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=27 Score=35.08 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=53.4
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCCh----hHHHHHHHHhHHCCCCCChhhHHH
Q 003937 75 PVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRF----KNAIRMFVEMVQDQVLPTQFTVTS 150 (785)
Q Consensus 75 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t~~~ 150 (785)
..+|....-..+.++...|..+....+..-...+|...-...+.++.+.|+. .+++..+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3444444445555555555433333333323344555555555666666653 3455555555322 344444444
Q ss_pred HHHHHhccCChh--HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 003937 151 VLASCTALGDLS--AGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDE 196 (785)
Q Consensus 151 ll~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 196 (785)
.+.+++..+.-. ....+...+...-..++..+--..+.++++.|+.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 444444433211 0112222222222234555555556666555553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.3 Score=39.19 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 003937 18 HLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDL 97 (785)
Q Consensus 18 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 97 (785)
.+++.+...+.+......++.+...+...+....+.++..|++.+..+...+++..... +-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888999999999999888778899999999999999888888888874332 444566666667777777
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCC
Q 003937 98 ACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGD 160 (785)
Q Consensus 98 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 160 (785)
|.-++.++...+.. +..+...++++.|++.+.+ .++...|..+++.|...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 66666655432111 1112233444444433222 2356677777777765554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=3.7 Score=39.85 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=21.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 492 HGLGEEAIQLFERMLELGIKPDH----ITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
.|++.+|...|...++. -|+. ..+--|..++...|++++|..+|..+.+
T Consensus 154 sgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 154 SGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34455555555555542 2221 1223344444445555555555444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.93 E-value=13 Score=37.52 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHhhccCCHHHHHHHHHHhh---hcCCCCCCchhHHH
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKP-D----HITYVGVLTACTHGGLVEQGQRYYNMMK---NVHKIKPTPSHFAS 555 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ 555 (785)
+|..++...+.++++++.|+...+---.. | ...+..+.+.+....++++|.-+..+.. +.+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666667888888887766521111 1 2367777777888888887776654432 22333333333333
Q ss_pred H-----HHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 556 M-----VDLLGRAGLLQEAYNFIENM-------PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 556 l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
+ .-+|...|++.+|.+.-++. +-+| ..-....+.+.|+..|+.|.|..-|+++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3 33455666666666555543 3222 1334556777789999999988888887653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.64 E-value=48 Score=37.63 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHh---c
Q 003937 385 VGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSK---A 460 (785)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~---~ 460 (785)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345567899999988776 2344556666666665543332222211 2221111 01111345667777775 4
Q ss_pred CCHHHHHHHHHhcccC
Q 003937 461 GNINAARRVFNLIHWR 476 (785)
Q Consensus 461 g~~~~A~~~~~~~~~~ 476 (785)
.++.+|.+.|--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5777788777766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.51 E-value=3.3 Score=34.98 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 488 ALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|..-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666665 343 334666666666666666666666655554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.87 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777888888888888888887773
|
... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.19 E-value=19 Score=32.53 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHhhCCCCCc
Q 003937 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQG--RLDLACEVFNLMPNRDS 110 (785)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~~~ 110 (785)
.+....+.+.+++|+..++..+++.+.+.|.+.....+...-.-+|...-...+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455666778999999999999999999999988888877655455444443333322211 1344555555543
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
..+..++..+...|++-+|+++...... .+......++.+..+.+|...--.++......
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2467788888899999999998877532 12223355667766666666555555555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.19 E-value=35 Score=36.42 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKP-DH-ITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
..+..+.-+.|+.++|++.|++|.+.. ++ |. .....|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345566677888888888888887642 22 22 356677888888888888888887653
|
The molecular function of this protein is uncertain. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.82 E-value=3.6 Score=35.93 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
..++.++++.+++.+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888888888888888998888888888888899999999999998877654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.63 E-value=5.1 Score=39.53 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHITYVGV 520 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 520 (785)
.++..++..+..+|+.+.+.+.++++... -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44577888899999999999999887533 3778899999999999999999999998875 5788877766555
Q ss_pred HHH
Q 003937 521 LTA 523 (785)
Q Consensus 521 l~a 523 (785)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.52 E-value=29 Score=33.64 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=84.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcc-
Q 003937 354 DGYIKIGDIGPARRIFDSLRDR------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREG-PKPNNYTLSAMLSVSSSL- 425 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~- 425 (785)
..-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++..+.- -.|| .-|..-|.+.+..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhc
Confidence 3344555677777777666542 12233345566777888888888877766542 2332 3344444443321
Q ss_pred ------CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhH-HH-HHHHHHHHcCChHH
Q 003937 426 ------ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVS-WT-SMIVALAQHGLGEE 497 (785)
Q Consensus 426 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~-~~-~li~~~~~~g~~~~ 497 (785)
.+...+++.+..+.. +|.-|=.+.-..+|......+. |... ++ .+..-|.+.|.+..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 122222222222211 1111111111122222221111 1111 11 23455788888888
Q ss_pred HHHHHHHHHHCCCCCCH-H---HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 498 AIQLFERMLELGIKPDH-I---TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 498 A~~~~~~m~~~g~~p~~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
|..-+++|++. -|+. . .+-.+..+|...|..++|...-.-+.
T Consensus 186 A~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888885 3332 2 45556667777888887777665554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.51 E-value=1 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
+|+.|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.27 E-value=18 Score=30.96 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
..-+..+...|+-+.--+++.++.+. -+|++.....+..||.+.|+..++.+++.+.-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555666666666666665542 355666666666666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.9 Score=28.91 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 456666777777777777777777777 456543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.22 E-value=50 Score=36.08 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
+..+|...+.--.+.|+.+...-+|++..-|- ...|--.+.-.-..|+.+-|-.++..-.+--++-.+.+-..--..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 56788889999999999999999999887652 234544444444558888887777665554333222222222223
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH---HHHHhcc-cCCChhHHHHHHHH-----HHHc
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAAR---RVFNLIH-WRQETVSWTSMIVA-----LAQH 492 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~-~~p~~~~~~~li~~-----~~~~ 492 (785)
+-..|+...|+.+++.+...- +.-+.+-.--+.+..+.|+.+.+. +++.... .+-+....+.+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 455678888888888887765 333333344456667778888777 4443332 11122223333222 2345
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003937 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG 527 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 527 (785)
++.+.|..++.+|.+. ++++..-|..++.-+...
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 6778888888888773 344455666666654433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.90 E-value=75 Score=37.81 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.-+...+.+++|.-.|+..-+ ..-.+.++...|+|++|..+..++.. +-.--..+-..|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccc
Confidence 333445556666555544322 12245566666777777666665542 1111122334566666666666
Q ss_pred HHHHHHHHhCC
Q 003937 567 QEAYNFIENMP 577 (785)
Q Consensus 567 ~~A~~~~~~~~ 577 (785)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 66666665553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.90 E-value=4.2 Score=36.17 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456677777777777777777777766677777777777777777777776544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.89 E-value=16 Score=36.91 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcCC-------CCHhHHHHHHHHHHHcCC----hhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhccCc
Q 003937 361 DIGPARRIFDSLRD-------RDVVAWTAMLVGYEQNGL----NKDAVELFRSMVREGPKPNNY--TLSAMLSVSSSLAS 427 (785)
Q Consensus 361 ~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~ 427 (785)
....|..+|+.|.+ ++-.++..++.. ..++ .+++..+|+.+...|+..+.. ..+.+|..+.....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 45556666666654 233445555443 2222 245677788888877766433 33344443332222
Q ss_pred --hHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 428 --LDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 428 --~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
...+..++..+.+.|+++....|..+.
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 446777888888888887776665443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.34 E-value=45 Score=34.72 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC--chh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP---DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT--PSH 552 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 552 (785)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45568888888888888888888888887643221 2223333444556677778888877766541 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNF-IENMPLEPDVVAWGSLLSACRV------HKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
...+...+.. ..+..... ........-...+..+...+.. .+..+.+...+..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001223233333333 3778889999999999999777777766666
Q ss_pred HHh
Q 003937 626 YSS 628 (785)
Q Consensus 626 ~~~ 628 (785)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.6 Score=27.06 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 513 (785)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777777888888888777776 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=40 Score=33.85 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCCHhHHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 374 DRDVVAWTAMLVGYEQNGLN----KDAVELFRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
.+|...-...+.++.+.|+. .+++.++..+... .|+...-...+.++..
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 34444444455555555543 3455555555332 3444444444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.90 E-value=3.5 Score=37.72 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=65.0
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 559 LLGRAGLLQEAYNFIENM-P-LEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
-+.+.|++++|..-+... . ++|. .+.|..-..+..+.+..+.|+....+++++.|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777666554 1 1111 33444445556788889999999999999999777777777889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 003937 632 WEDAANIRKSMKYVG 646 (785)
Q Consensus 632 ~~~a~~~~~~m~~~g 646 (785)
+++|..-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.93 E-value=11 Score=34.71 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCC--CC----chh
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK--PT----PSH 552 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~----~~~ 552 (785)
.+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+......-. ++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666777777777777777776655555543 45566666666677777666666554311111 11 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.10 E-value=8.9 Score=37.84 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=71.9
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQE--------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 512 (785)
.|.+....+...+++.-....+++++...+-++...|+ .++|-.+ +-.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 35555566666777777777788888888877764432 2233322 23346778999988888899999
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 513 DHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 513 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|..|++.+++.+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999988888776654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.81 E-value=14 Score=33.99 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCC-Chh------H
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ--FTVTSVLASCTALGDLSAGKKVHSFVVKTGLSG-CVN------V 182 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~------~ 182 (785)
.+..+...|.+.|+.++|++.|.++.+....|.. ..+..+|+.+...+++..+......+...--.+ |.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5777788888888888888888888776555543 356677777888888888777776665543221 222 2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 183 TNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
|..|.. ...+++..|-+.|-+..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHccC
Confidence 222222 23578888887776665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.21 E-value=19 Score=32.44 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHH-----HHHHHcCChhHHHHHHHHHHHc
Q 003937 360 GDIGPARRIFDSLRDRDVVAWTAML-----VGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 360 g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3455555555555544333333221 2344555666666666655443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.12 E-value=19 Score=33.23 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=67.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhH--HHHHHHHHHHcCC
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVA--WTAMLVGYEQNGL 392 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~ 392 (785)
+...+..+|++++|...++.....+. ...+-..|.+...+.|.+++|.+.++...+++-.+ ...--+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 45567888999999988887554333 33455667888889999999999999888775443 3333467888999
Q ss_pred hhHHHHHHHHHHHcC
Q 003937 393 NKDAVELFRSMVREG 407 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g 407 (785)
-++|..-|.+.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999888875
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.87 E-value=1e+02 Score=35.23 Aligned_cols=211 Identities=10% Similarity=-0.020 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 329 VEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
..+|...++.......+......-+..-...++++.+...+..|+.. ...-.--+..++...|+.++|...|++...
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445555543333223333333344444566666666666666531 122223344555556777777777776532
Q ss_pred cCCCCCHhhHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH
Q 003937 406 EGPKPNNYTLSAMLSVSSSLASL-DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS 484 (785)
Q Consensus 406 ~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~ 484 (785)
. . +|-.++.+- +.|.. ......... ....+..+.. -.-+..+...|....|...+..+....+....-.
T Consensus 375 ~---~---~fYG~LAa~-~Lg~~~~~~~~~~~~-~~~~~~~~~~--~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~ 444 (644)
T PRK11619 375 Q---R---GFYPMVAAQ-RLGEEYPLKIDKAPK-PDSALTQGPE--MARVRELMYWNMDNTARSEWANLVASRSKTEQAQ 444 (644)
T ss_pred C---C---CcHHHHHHH-HcCCCCCCCCCCCCc-hhhhhccChH--HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 1 1 222222211 11110 000000000 0000010111 1223445566777777777766554445444545
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELG----IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 552 (785)
+.....+.|.++.++.........+ --|- .|...+...+..-.++.+.- +.-+.+..++.|+...
T Consensus 445 la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a~S 513 (644)
T PRK11619 445 LARYAFNQQWWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKARS 513 (644)
T ss_pred HHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCCcc
Confidence 5555556677777666554322210 0111 24555555554444454432 2233333466666443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.49 E-value=62 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=14.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 003937 382 AMLVGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 382 ~li~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
.-+..+.+.++.+++.+.+.+|...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Confidence 3344444456666666666666654
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.37 E-value=60 Score=32.24 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=62.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH---HHHHHHHcCChHHHH
Q 003937 423 SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS---MIVALAQHGLGEEAI 499 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~ 499 (785)
...++...+..+++.+....-.. ....-.|...|...|+.+.|..++..++..-...-|-. -|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555666555555543222 33335677888889999999999998875422222222 233333333333333
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 500 QLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 500 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
.+-++.-. .|+ ...-..+...+...|+.++|.+.+-.+
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333332 453 334455666777778888777654443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.20 E-value=73 Score=33.13 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD----NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+|..+...++++|+++.|...+.++....+. .+.....-+......|+-++|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999886522 4567777789999999999999998888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.38 E-value=3.9 Score=25.15 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.27 E-value=26 Score=28.28 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 130 (785)
-|++.+.+...++.+++..+ .-++.+...|++++|..+.+.+..||...|-+|-. .+.|..+++.
T Consensus 24 A~tIAdwL~~~~~~~E~v~l-------------IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~ 88 (115)
T TIGR02508 24 ANTIADWLHLKGESEEAVQL-------------IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALE 88 (115)
T ss_pred HHHHHHHHhcCCchHHHHHH-------------HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHH
Confidence 34455555555544444433 23456778999999999999999999999988755 3567777777
Q ss_pred HHHHHhHHCCCCCChhhHH
Q 003937 131 RMFVEMVQDQVLPTQFTVT 149 (785)
Q Consensus 131 ~~~~~m~~~g~~p~~~t~~ 149 (785)
.-+.+|-.+| .|...+|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777777766 45544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.22 E-value=2e+02 Score=37.48 Aligned_cols=309 Identities=14% Similarity=0.106 Sum_probs=160.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHh----CCCCCchHhHHHHHHHHHhcCCHHHHHHHHH-hcCCCCHhHHHHHHHHHHHcCC
Q 003937 318 ALISCYAKVGGVEIAQKIVEQS----GISYLNVIAFTTLLDGYIKIGDIGPARRIFD-SLRDRDVVAWTAMLVGYEQNGL 392 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~ 392 (785)
.|..+-.+|+.+.+|...+++- ........-+..+...|..-++.|...-+.. +..+++. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4455666777788888777773 1111133344445556777777776666655 2333332 224555667788
Q ss_pred hhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHhcCCHHHHHHHH
Q 003937 393 NKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNA-LITMYSKAGNINAARRVF 470 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~ 470 (785)
+..|...|+.+.+. .|+ ..+++.++......+.++...-..+..... ..+...-++. =+.+--+.++++.-....
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 88999999988765 344 566777776666666666555433333222 1222222222 223334555555555444
Q ss_pred HhcccCCChhHHHHH-HH-HHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH---------
Q 003937 471 NLIHWRQETVSWTSM-IV-ALAQHG--LGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY--------- 537 (785)
Q Consensus 471 ~~~~~~p~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~--------- 537 (785)
. .+ +..+|.+. +. .+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.
T Consensus 1542 ~---~~-n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1542 S---DR-NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred h---cc-cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHH
Confidence 4 22 55566554 22 222221 1111112333333321111 12222222222221111
Q ss_pred -HHhhhcCCCCCCchhHH-H--HHHHHhhcCCHHHHHHHH---Hh----CCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 003937 538 -NMMKNVHKIKPTPSHFA-S--MVDLLGRAGLLQEAYNFI---EN----MPLEPD-----VVAWGSLLSACRVHKNLDLG 601 (785)
Q Consensus 538 -~~m~~~~~~~p~~~~~~-~--li~~~~~~g~~~~A~~~~---~~----~~~~p~-----~~~~~~ll~~~~~~g~~~~a 601 (785)
.......++.++..+.+ . -..-+.+.+....+.+-+ ++ ...+|+ ..+|......++..|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111123333322111 1 011111222111122211 11 112322 45898999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
....-.+.+..+ +..+.-.+......|+-..|..++++-.+..
T Consensus 1690 ~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998888877664 5688889999999999999999999887543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.7 bits (166), Expect = 5e-12
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 6/195 (3%)
Query: 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNAL 453
+ A L + P L+ +L + SLD + ++ + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 454 ITMYSKAGNINAARRVFNLIHWRQE------TVSWTSMIVALAQHGLGEEAIQLFERMLE 507
+ A + + H +++ + ++++ A+ G +E + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 508 LGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ 567
G+ PD ++Y L + +K A ++ RA +L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 568 EAYNFIENMPLEPDV 582
+ L P +
Sbjct: 254 AVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 3e-07
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)
Query: 81 SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEI-------GRFKNAIRMF 133
+L LA + + + + YN + G FK + +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 134 VEMVQDQVLPTQFTVTSVLASCTALG-DLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAK 192
+ + P + + L D ++ + + GL T LL+ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 193 VGDEMMAKAVFDGMRL 208
V L
Sbjct: 249 ATVLKAVHKVKPTFSL 264
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-------DVVAWTAMLVGYEQNGLNKDAV 397
+ + A + + + + A+++G+ + G K+ V
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 398 ELFRSMVREGPKPNNYTLSAML 419
+ + G P+ + +A L
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 2e-06
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 13/168 (7%)
Query: 1 METPNPPSLISPLEF-YAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA 59
+E + SP E A LLQ + V + + + L +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 60 KTESISYAKKVFDEM-------PVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNR---- 108
T+ + A + + TL +N ++ +A+QG V ++ +
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 109 DSVSWTTIIVTYNEIGRFKNAI-RMFVEMVQDQVLPTQFTVTSVLASC 155
D +S+ + + I R +M Q+ + +L+
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 4e-05
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 12/120 (10%)
Query: 185 SLLNMYAKVGDEMMAKAVFDGMRLKNVS----SWNVVVSLHIHSGRLDLARAQFDQMIER 240
LL + +A +S + + +L LA +
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 241 -------DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEK 293
+ +N+++ G+++ G F+ L M+KD+ L PD + A+ L ++
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 71/556 (12%), Positives = 152/556 (27%), Gaps = 174/556 (31%)
Query: 97 LACEVFN------LMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTS 150
+A +V M + + W + N+ +EM+Q L Q
Sbjct: 166 VALDVCLSYKVQCKMDFK--IFWLNL-------KN-CNSPETVLEMLQK--LLYQID--- 210
Query: 151 VLASCTALGDLSAGKKVHSFVVKTGLSGCV---NVTNSLLNMYAKVGDEMMAKAVFDGMR 207
+ T+ D S+ K+ ++ L + N LL V
Sbjct: 211 --PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------------VLL--- 251
Query: 208 LKNVSSWNVVVSLHIHSGRL----DLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALG 263
NV + + ++ L F ++ + + + E
Sbjct: 252 --NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKS 305
Query: 264 MFANML--KDSSLKPDKFTLASTLSACA-NLEKLKL-GKQIHAYIIRTEFDATGPVGNAL 319
+ L + L N +L + + I + +
Sbjct: 306 LLLKYLDCRPQDLPR---------EVLTTNPRRLSIIAESIRDGLATWDN---------- 346
Query: 320 ISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV-- 377
+ V ++ I+E S LNV+ + ++ +F
Sbjct: 347 ---WKHVNCDKL-TTIIESS----LNVLEPAEYRKMFDRLS-------VFPP----SAHI 387
Query: 378 ------VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHG 431
+ W ++ +NK S+V + PK + ++ ++ L++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIY--LELKVKLENE 442
Query: 432 KQIHASALRSGEASSLSVSNALIT----MYSKAGNINAARRVFNLI--HWRQETVSWTSM 485
+H S + S+ LI Y ++ I H
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHIGHH----------- 480
Query: 486 IVALAQHGLGEEAIQLFERM-LELGIKPDHITYVGVLTACTHGGL-VEQGQRYYNMMKNV 543
L E + LF + L+ I + + L Q ++Y +
Sbjct: 481 ---LKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYI 534
Query: 544 HKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKI 603
P + +V+ + +F+ +E +++ K DL +I
Sbjct: 535 CDNDP---KYERLVNAIL---------DFLPK--IEENLI----------CSKYTDLLRI 570
Query: 604 AAEKLLLIEPDNSGAY 619
A + ++ +
Sbjct: 571 A------LMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 73/506 (14%), Positives = 141/506 (27%), Gaps = 156/506 (30%)
Query: 353 LDGYIKIGD-IGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN 411
+D I D + R+F +L + ++ V+ F V E +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSK-----------------QEEMVQKF---VEEVLRI- 89
Query: 412 NYT-LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVF 470
NY L + + S+ I + L N + Y N++ +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIE-------QRDRLYNDNQVFAKY----NVSRLQPYL 138
Query: 471 NLIHWRQETVSWTSMIVALAQHGLG--------EEAIQLFERMLELGIKPDHITYVGVLT 522
L E ++++ G+ + ++ ++ I ++ +
Sbjct: 139 KLRQALLELRPAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLNLKN 191
Query: 523 ACTHGGLVEQGQR-YYNMMKN----VHKIKPTPSHFASMVDLLGRAGLLQEAYN---FIE 574
+ ++E Q+ Y + N S+ L R L + Y +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLV- 249
Query: 575 NMPLEPDVVAW-GSLLSA----CRV------HKNLDLGKIAAEKLLLIEPDNSGAYS--- 620
L +V +A C++ + D A + ++ +
Sbjct: 250 ---LL-NV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 621 -ALCNLYSSCGKWED----------------AANIRKSM------KYVGVKKTQGFSWVQ 657
+L Y C + +D A +IR + K+V K
Sbjct: 304 KSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---- 358
Query: 658 IQNKVHVFGVEDWLHP--QRD-----AIYNKMAKI--------WDEIKEMGFVPDTASVL 702
I++ + + L P R +++ A I W ++ + V + L
Sbjct: 359 IESSL------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKL 411
Query: 703 HD---VEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLV 759
H VE+ KE + S I L EN L H +V
Sbjct: 412 HKYSLVEKQPKESTISIPS----IYLELKVKLEN-----EYAL------HR------SIV 450
Query: 760 DREIVVRDATRFHHFKKGLCSCRDYW 785
D F Y+
Sbjct: 451 DH---YNIPKTFDSDDLIPPYLDQYF 473
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 38/310 (12%)
Query: 349 FTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVRE 406
+ L+ ++ A S+ + D + + ++
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 407 GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALI-----TMYSKAG 461
P N L +SL G++ + S + A+ Y
Sbjct: 335 --DPYN--LDVYPLHLASLHES--GEKNKLYLI-SNDLVDRHPEKAVTWLAVGIYYLCVN 387
Query: 462 NINAARRVFN--LIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYV 518
I+ ARR F+ Q +W + A G ++AI + + H+ Y+
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYL 445
Query: 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA----GLLQEA---YN 571
+ G + Y + + + +++ LG +Q A +
Sbjct: 446 FLGMQHMQLGNILLANEYLQ---SSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQ 499
Query: 572 -----FIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625
+ E W +L A R K D A + LL+ +++ ++A+ +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559
Query: 626 YSSCGKWEDA 635
Y A
Sbjct: 560 YLHKKIPGLA 569
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 9/157 (5%)
Query: 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL-TACTHGGLVEQGQRYYNM 539
S ++ + G EEA++L+ + LE+ P+ L + G +++ +Y
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 540 MKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIEN-MPLEPD-VVAWGSLLSACRVHK 596
+I PT +++M + L +Q A + + P A +L S +
Sbjct: 69 AI---RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWE 633
N+ + L ++PD AY L + W
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 18/226 (7%), Positives = 50/226 (22%), Gaps = 34/226 (15%)
Query: 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541
W + + G A F L + ++ + + ++M
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 542 NVH------KIKPT------------PSHFASMVDLLGRAGLLQEAYN----FIENMPLE 579
+V ++ S + + + AY
Sbjct: 198 SVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257
Query: 580 PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIR 639
PD + + + ++ + ++P L +
Sbjct: 258 PD--LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL--- 312
Query: 640 KSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKI 685
+S KK Q + + + + + + +
Sbjct: 313 ESKGKTKPKKLQ-----SMLGSLRPAHLGPCGDGRYQSASGQKMTL 353
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 37/317 (11%), Positives = 74/317 (23%), Gaps = 78/317 (24%)
Query: 323 YAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA 382
Y + + AQ++ S + F L Y+ G ++ A
Sbjct: 15 YQQC--INEAQRVKPSSPERDVERDVF--LYRAYLAQRKYGVVLDEIKPSSAPELQAVRM 70
Query: 383 MLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG 442
+ V + N T M +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAA---------------------- 108
Query: 443 EASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLF 502
++Y N +AA R H + L + + A +
Sbjct: 109 ------------SIYFYDQNPDAALRTL---HQGDSLECMAMTVQILLKLDRLDLARKEL 153
Query: 503 ERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR 562
++M + D L + + ++ K
Sbjct: 154 KKMQD--QDEDAT-------------LTQLATAWVSLAAGGEK----------------- 181
Query: 563 AGLLQEAYNFIENM--PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620
LQ+AY + M P ++ + + + ++ L + +
Sbjct: 182 ---LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 621 ALCNLYSSCGKWEDAAN 637
L L GK + N
Sbjct: 239 NLVVLSQHLGKPPEVTN 255
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 71/612 (11%), Positives = 139/612 (22%), Gaps = 140/612 (22%)
Query: 81 SWNTILSAYAKQGRLDLACEVFN----LMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEM 136
+ + + V L P+ V+ + I + + + +
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPD-QVVAIASNIGGKQALETVQRLLPVL--- 283
Query: 137 VQDQVL---PTQFTVTSVLASC-TALGD----LSAGKKVHSFVVKTGLSGCVNVTNSLLN 188
Q P Q + AL L + H V S
Sbjct: 284 --CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT-----PDQVVAIASHDG 336
Query: 189 MYAKVGDEMMAKAVFD---GMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERD---V 242
+ V G+ V + + Q V
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 243 VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF-TLASTLSACANLEKLKLG---- 297
V S + L + L PD+ +AS LE ++
Sbjct: 397 VAIASNGGKQALETVQ-RLLPVLCQAHG---LTPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 298 --------KQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQS-GISYLNVIA 348
Q+ A + V+ ++ Q+ G++ V+A
Sbjct: 453 CQTHGLTPAQVVAIASH---------DGGK----QALETVQQLLPVLCQAHGLTPDQVVA 499
Query: 349 FTTLLDGYIKIGDIGPARRIFD---SLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405
+ + G + + + L VVA + G + + + +
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH- 558
Query: 406 EGPKPNNY--------TLSAMLSVSSSLASLDHG-----KQIHASALRSGEASSLSVSNA 452
G P+ A+ +V L L Q+ A A G +L
Sbjct: 559 -GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQR 617
Query: 453 LITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512
L+ + +A + V+ S + + + + L P
Sbjct: 618 LLPVLCQA-----------HGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL--TP 664
Query: 513 DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNF 572
D + + G Q
Sbjct: 665 DQV------------------VAIAS-----------------------NGGGKQALETV 683
Query: 573 IENMP-------LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624
+P L + VVA S + + + + + PD A ++
Sbjct: 684 QRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 743
Query: 625 LYSSCGKWEDAA 636
+ +
Sbjct: 744 GKQALETVQRLL 755
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 59/471 (12%), Positives = 118/471 (25%), Gaps = 84/471 (17%)
Query: 225 GRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF-T 280
+ Q VV S G L + + L PD+
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC---QAHGLPPDQVVA 262
Query: 281 LASTLSACANLEKLK--LGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQ 338
+AS + LE ++ L A+ + + + A GG + A + V++
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQ----------VVAIASHGGGKQALETVQR 312
Query: 339 SGISYLNVIAFTT--------LLDGYIKIGDIGPARRIFD---SLRDRDVVAWTAMLVGY 387
T G + + + L VVA + G
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Query: 388 EQNGLNKDAVELFRSMVREGPKP-----NNYTLSAMLSVSSSLASLDHGKQI---HASAL 439
+ + + + P +N A+ +V L L + A+
Sbjct: 373 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAI 432
Query: 440 --RSGEASSLSVSNALITMYSKA---------------------GNINAARRVFN--LIH 474
G +L L+ + + + V
Sbjct: 433 ASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL 492
Query: 475 WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQ 534
+ V+ S I + + + + L PD + A G +Q
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL--TPDQVV------AIASNGGGKQAL 544
Query: 535 -RYYNMMKNVHK-IKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-------LEPD-VVA 584
++ + + TP + + G Q +P L VVA
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVA---IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601
Query: 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635
S + + + + + + P A ++ + +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 68/454 (14%), Positives = 131/454 (28%), Gaps = 76/454 (16%)
Query: 225 GRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF-T 280
+ Q VV S G L + L +
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG---LTQVQVVA 601
Query: 281 LASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSG 340
+AS + LE ++ + + + P A + A G + A + V++
Sbjct: 602 IASNIGGKQALETVQ--RLLPVL---CQAHGLTP---AQVVAIASHDGGKQALETVQRLL 653
Query: 341 ISYLNVI--------AFTTLLDGYIKIGDIGPARRIFD---SLRDRDVVAWTAMLVGYEQ 389
A + G + + + L VVA + G +
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQA 713
Query: 390 NGLNKDAVELFRSMVREGPKPNNY--------TLSAMLSVSSSLASLDHG-----KQIHA 436
+ + + G P+ A+ +V L L Q+ A
Sbjct: 714 LETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Query: 437 SALRSGEASSLSVSNALITMYSKAGNINAARRV--FNLIHWRQ--ETVS----------- 481
A G +L L+ + + + A+ V + I +Q ETV
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831
Query: 482 -WTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHITYVGVLTACTHGGLVEQGQR 535
+VA+A + G++A++ +R+L G+ PD + A +Q
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQV------VAIASNIGGKQALE 885
Query: 536 YYNM----MKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYN-FIENMPLEPD-VVAWGSL 588
+ H + A + +A +Q ++ L PD VVA S
Sbjct: 886 TVQRLLPVLCQDHGLTLDQV-VAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN 944
Query: 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622
+ + + + + P+ A ++
Sbjct: 945 SGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 20/209 (9%)
Query: 432 KQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQ 491
Q+ A A +G +L L+ + +A + + V+ S
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLT-----------PAQVVAIASHDGGKQA 238
Query: 492 HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT- 549
+ + + + L PD + + V++ H + P
Sbjct: 239 LETMQRLLPVLCQAHGL--PPDQVVAIASNIGGKQALETVQRLLPVLC---QAHGLTPDQ 293
Query: 550 PSHFASMVDLLGRAGLLQEAYN-FIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEK 607
AS +Q + L PD VVA S + + + +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAA 636
+ PD A ++ + +
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLL 382
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 25/209 (11%), Positives = 54/209 (25%), Gaps = 20/209 (9%)
Query: 432 KQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQ 491
Q+ A R G + +V + + N+ + V+ S
Sbjct: 156 GQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP-----------AQVVAIASNNGGKQA 204
Query: 492 HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT- 549
+ + + + L P + +++ H + P
Sbjct: 205 LETVQRLLPVLCQAHGL--TPAQVVAIASHDGGKQALETMQRLLPVLC---QAHGLPPDQ 259
Query: 550 PSHFASMVDLLGRAGLLQEAYN-FIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEK 607
AS + +Q + L PD VVA S + + + +
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319
Query: 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAA 636
+ PD A ++ + +
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLL 348
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 488 ALAQHGLG--EEAIQLFERMLELGIKPDHITYVGVL-TACTHGGLVEQGQRYYNMMKNVH 544
A ++ G E A + ++ +PD+ + +L + +++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFST---LAI 60
Query: 545 KIKPT-PSHFASMVDLLGRAGLLQEA---YN-FIENMPLEPDVV-AWGSLLSACRVHKNL 598
K P ++++ ++ G LQEA Y + L+PD + + +L +A ++
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDM 117
Query: 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635
+ A L PD S L NL + G+ E+A
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513
+ A N +++++ + G +EAI+ + L +KPD
Sbjct: 53 AHFSTLAIKQN-----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPD 99
Query: 514 HI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP--TPSHFASMVDLLGRAGLLQEA- 569
I Y+ + A G +E + Y + + P + +LL G L+EA
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYV---SALQYNPDLYCVRS-DLGNLLKALGRLEEAK 155
Query: 570 --YN-FIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625
Y IE +P+ VAW +L + L EK + ++P+ AY L N+
Sbjct: 156 ACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 626 YSSCGKWEDA 635
++ A
Sbjct: 213 LKEARIFDRA 222
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 33/196 (16%)
Query: 457 YSKAGNINAARRVFNLIHWRQE---TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513
+AG+ AA R + WRQE T + Q + + ++ P
Sbjct: 9 EYQAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPL 65
Query: 514 HITY---VGVLTACTHGGLVEQGQ-----RYYNMMKNVHKIKPT-PSHFASMVDLLGRAG 564
+G + E+GQ +Y + ++KP + ++ L AG
Sbjct: 66 LAEAYSNLGNV-------YKERGQLQEAIEHYR---HALRLKPDFIDGYINLAAALVAAG 115
Query: 565 LLQEA---YNF-IENMPLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619
++ A Y ++ PD+ L + + L+ K K + +P+ + A+
Sbjct: 116 DMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 620 SALCNLYSSCGKWEDA 635
S L ++++ G+ A
Sbjct: 173 SNLGCVFNAQGEIWLA 188
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 37/167 (22%)
Query: 487 VALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG----LVEQGQ-----RYY 537
L + + + A+ + R L + P+H A HG EQG Y
Sbjct: 211 NVLKEARIFDRAVAAYLRALS--LSPNH--------AVVHGNLACVYYEQGLIDLAIDTY 260
Query: 538 NMMKNVHKIKPTPSHFA----SMVDLLGRAGLLQEA---YNF-IENMPLEPD-VVAWGSL 588
+++P HF ++ + L G + EA YN + L P + +L
Sbjct: 261 R---RAIELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNL 311
Query: 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635
+ R N++ K L + P+ + A+S L ++ GK ++A
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 23/157 (14%)
Query: 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541
+ A + G +A+ F + + + D Y
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRT-------------------EMYYWTN 45
Query: 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN-MPLEPD-VVAWGSLLSACRVHKNLD 599
+ + + + +AY F + + P+ V +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105
Query: 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAA 636
EK+L +E DN A L N Y + E
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 54/296 (18%)
Query: 356 YIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN 412
+ D ++ + ++D + + + L +V P+N
Sbjct: 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSN 89
Query: 413 YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL 472
+ +V + + A R SKA +
Sbjct: 90 PV--SWFAVGCYYLMV---GHKNEHARRY---------------LSKATTLE-------- 121
Query: 473 IHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVE 531
+ +W + + A ++A+ + + + H+ + + +
Sbjct: 122 ---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSK 176
Query: 532 QGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEA---YN-------FIENMPLEP 580
+R+++ I P P + + + G + A + I N
Sbjct: 177 LAERFFS---QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 581 D-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635
+L CR K + L++ P N+ YSA+ ++S G +E+A
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 35/282 (12%), Positives = 71/282 (25%), Gaps = 45/282 (15%)
Query: 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY--------TLSAMLSVSSSLAS 427
VVA + G + + + + G P A+ +V L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLLPV 128
Query: 428 LDHGKQI---HASAL--RSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSW 482
L + A+ G +L AL+ + +A + ++ V+
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP-----------EQVVAI 177
Query: 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541
S + + + + L P + V++
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGL--TPQQVVAIASNGGGKQALETVQRLLPVLC--- 232
Query: 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-------LEPD-VVAWGSLLSACR 593
H + P V + G Q +P L P VVA S +
Sbjct: 233 QAHGLTP---QQV--VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635
+ + + + P A ++ + +
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 55/437 (12%), Positives = 115/437 (26%), Gaps = 55/437 (12%)
Query: 228 DLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF-TLAS 283
A + VV S G L + + L P + +AS
Sbjct: 55 AWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLC---QAHGLTPQQVVAIAS 111
Query: 284 TLSACANLEKLKLGKQIHAYIIRTEFDATGPVG-NALISCYAKVGGVEIAQKIVEQS-GI 341
LE ++ + + V + + V+ ++ Q+ G+
Sbjct: 112 HDGGKQALETVQ--RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGL 169
Query: 342 SYLNVIAFTTLLDGYIKIGDIGPARRIFD---SLRDRDVVAWTAMLVGYEQNGLNKDAVE 398
+ V+A + G + + + L + VVA + G + + +
Sbjct: 170 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 229
Query: 399 LFRSMVREGPKP----NN--YTLSAMLSVSSSLASLDHGKQI---HASAL--RSGEASSL 447
+ P+ + A+ +V L L + A+ SG +L
Sbjct: 230 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQAL 289
Query: 448 SVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLE 507
L+ + +A + Q+ V+ S + + + +
Sbjct: 290 ETVQRLLPVLCQAHGLTP-----------QQVVAIASNGGGKQALETVQRLLPVLCQAHG 338
Query: 508 LGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566
L P + V++ H + P A + G
Sbjct: 339 L--TPQQVVAIASHDGGKQALETVQRLLPVLC---QAHGLTPE-QVVA----IASNGGGK 388
Query: 567 QEAYNFIENMP-------LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618
Q +P L P+ VVA S + + + + + P A
Sbjct: 389 QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Query: 619 YSALCNLYSSCGKWEDA 635
++ +
Sbjct: 449 IASNGGGRPALESIVAQ 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.33 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.33 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.17 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.08 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.03 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.94 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.72 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.52 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.36 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.32 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.23 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.13 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.12 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.11 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.08 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.03 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.02 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.9 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.89 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.89 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.85 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.84 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.74 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.7 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.67 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.54 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.5 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.46 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.22 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.01 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.62 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.39 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.24 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.18 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.94 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.81 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.87 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 86.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.73 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.71 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 82.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.99 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=379.41 Aligned_cols=500 Identities=12% Similarity=0.001 Sum_probs=351.1
Q ss_pred HHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 003937 89 YAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVH 168 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 168 (785)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777888888888888999999999999999999999999999984 5678889999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHH
Q 003937 169 SFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSM 248 (785)
Q Consensus 169 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~l 248 (785)
+.+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ++.-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHH
Confidence 887644 6788999999999999999999999999654222100 00001110 111123367899999
Q ss_pred HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhH-HHHHHHHhcccchhh--HHHH-HHHHHHhcCCCCcchHHHHHHHHH
Q 003937 249 IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTL-ASTLSACANLEKLKL--GKQI-HAYIIRTEFDATGPVGNALISCYA 324 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~-~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~ 324 (785)
+.+|.+.|++++|+++|++|+.. .|+..+. ..+...+...+..+. ...+ +..+...+......+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 274 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL--------- 274 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH---------
Confidence 99999999999999999999543 3544333 223222222211111 1111 222222222222233
Q ss_pred hcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRS 402 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 402 (785)
|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++
T Consensus 275 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 275 ------------------------YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330 (597)
T ss_dssp ------------------------HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444444455567777777776665 5677777777777777777777777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChh
Q 003937 403 MVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETV 480 (785)
Q Consensus 403 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~ 480 (785)
|.+.+. .+..++..++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.. +.+..
T Consensus 331 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 331 ILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 776542 255667777777777777777777777777543 45677778888888888888888888887642 23577
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 88888888888888888888888888742 335678888888888888888888888888762 234577888888888
Q ss_pred hhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 561 GRAGLLQEAYNFIENM-------PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|..++.+|.+.|+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 8888888888888887 44676 67888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhC
Q 003937 632 WEDAANIRKSMKYV 645 (785)
Q Consensus 632 ~~~a~~~~~~m~~~ 645 (785)
+++|.++++++.+.
T Consensus 566 ~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 566 PGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=374.67 Aligned_cols=516 Identities=9% Similarity=-0.014 Sum_probs=332.6
Q ss_pred HHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC--CCccHHHHHHHHHHhCCChhHHHHHH
Q 003937 56 NFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN--RDSVSWTTIIVTYNEIGRFKNAIRMF 133 (785)
Q Consensus 56 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 133 (785)
..+.+.|.+..++..|+.++.++...|+.++..|.+.|++++|..+|++|.. |+..+|+.++.+|.+.|++++|+.+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 3456778888899999999989999999999999999999999999999863 78889999999999999999999999
Q ss_pred HHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcch
Q 003937 134 VEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSS 213 (785)
Q Consensus 134 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 213 (785)
+.+.. ..++..+++.++.++.+.|++++|.++++.+ .|+... ...+.+.++. +.-...++.+
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~----~~~~~~~~~~-------~~~~~~~~~~ 202 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRKD----EKNANKLLMQ-------DGGIKLEASM 202 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------CC-------CSSCCHHHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCcccc----cccccccccc-------ccccchhHHH
Confidence 99864 3678899999999999999999999999852 121100 0000000000 0001223445
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHH--H-HHHhhhcCCCCCChhhHHHHHHH
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALG--M-FANMLKDSSLKPDKFTLASTLSA 287 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--l-~~~ml~~~g~~p~~~t~~~ll~~ 287 (785)
|+.++.+|.+.|++++|.++|++|.+. +...|..+...+...+..+.+.. + +..+ ...+..+...+|..++..
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY-SKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH-HGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccc-ccchHHHHHHHHHHHHHH
Confidence 555666666666666666666555332 23344444443333322221111 1 2333 222222233333333444
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARR 367 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 367 (785)
+.+.|+++.|.+++..+.+. +++..+++.++.+|.+.| ++++|..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g---------------------------------~~~~A~~ 326 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS---------------------------------RFIDVLA 326 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT---------------------------------CHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc---------------------------------CHHHHHH
Confidence 44444444444444443332 233444444444444444 5555555
Q ss_pred HHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 003937 368 IFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEA 444 (785)
Q Consensus 368 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 444 (785)
+|+++.+ .+..+|+.++.+|.+.|++++|..+|++|.... ..+..++..+...+.+.|++++|.+++..+.+.. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 404 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-P 404 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 5544431 234455555555555555555555555555321 2234455555555555555555555555555432 3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.+..+++.++.+|.+.|++++|.++|+++.. +++..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++.
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3566778888888888999999988887742 2377889999999999999999999999998742 335678999999
Q ss_pred HhhccCCHHHHHHHHHHhhhcC---CCCCC--chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVH---KIKPT--PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|..+...|...
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999999999999999887621 55777 678999999999999999999999987 3345 788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
|++++|...++++++++|+++.++..|.++|..
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=256.72 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=175.4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCCCch
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS---------LDHGKQIHASALRSGEASSL 447 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 447 (785)
...++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|+.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHW---RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
.+||+||++|++.|++++|.++|++|.. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999974 4899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
++.|++++|.+++++|.+ .+..|+..+|+.+++.|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 79999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=251.40 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC---------H
Q 003937 394 KDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN---------I 463 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 463 (785)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788877776543 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhccc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 464 NAARRVFNLIHW---RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 464 ~~A~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
++|.++|++|.. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999964 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 003937 541 KNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 541 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 595 (785)
.+ .|+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..++..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 97 799999999999999999999999999999999 7899999999999998754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-24 Score=225.96 Aligned_cols=370 Identities=15% Similarity=0.146 Sum_probs=258.8
Q ss_pred HHhhCCCchHHHHHHHHhhhcCCCCCChh-hHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003937 251 GYSQNGYDFEALGMFANMLKDSSLKPDKF-TLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV 329 (785)
Q Consensus 251 ~~~~~g~~~~A~~l~~~ml~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 329 (785)
.+.+.|++++|+..+.+++.. .|+.. .+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344555555555555555322 23322 22233333344555555555555544432 33445566666667777777
Q ss_pred HHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 330 EIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 330 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
++|...|+++....| +..+|..++..+.+.|++++|...|+++.+ | +...+..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777766554444 445667777777777777777777766543 2 334556666667777777777777777766
Q ss_pred cCCCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHH
Q 003937 406 EGPKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSW 482 (785)
Q Consensus 406 ~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~ 482 (785)
. .| +..++..+...+...|+++.|...+..+++.. +.+...+..+...+...|++++|...|++.. ..| +..+|
T Consensus 164 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 T--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 4 23 34556666667777777777777777777654 3345667778888888888888888887653 223 56788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|...++++.+. .+++...+..+...|.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8888889999999999999999888 4564 457888888888899999999999888762 3456778888888999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 562 RAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
+.|++++|.+.++++ ...|+ ..+|..+...+.+.|++++|...++++++++|+++..|..++.+|...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999988887 45554 67888888889999999999999999999999888888888888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-23 Score=220.54 Aligned_cols=352 Identities=15% Similarity=0.135 Sum_probs=305.3
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHH
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGP 364 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 364 (785)
..+.+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++......| +..+|..++..|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 44567899999999998888764 34456677788899999999999999998665555 78899999999999999999
Q ss_pred HHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCchHHHHHHHHHHHH
Q 003937 365 ARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLASLDHGKQIHASALR 440 (785)
Q Consensus 365 A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~ 440 (785)
|...|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+... +..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998763 3 5668999999999999999999999999875 466544 55566678889999999999999998
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITY 517 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 517 (785)
.. +.+...++.+...|.+.|++++|...|+++.. .| +...|..+...+...|++++|+..|++..+ +.|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 74 44578889999999999999999999998742 23 567899999999999999999999999988 5675 5688
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLE-PDVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~ 595 (785)
..+..++...|++++|...|+++.+. -+.+...|..+...|.+.|++++|.+.++++ ... ++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999862 2334678999999999999999999999998 333 4688999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=209.32 Aligned_cols=423 Identities=10% Similarity=0.007 Sum_probs=283.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhhcC--CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHh
Q 003937 213 SWNVVVSLHIHSGRLDLARAQFDQMI--ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD-KFTLASTLSACA 289 (785)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~-~~t~~~ll~~~~ 289 (785)
.|......+.+.|++++|.+.|+++. .|+..+|..+..+|.+.|++++|+..|++++.. .|+ ...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHH
Confidence 44455556666666666666666552 245556666666666666666666666665332 132 234555555555
Q ss_pred cccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCC--CchHhHHHH---HHHHHhcCCHHH
Q 003937 290 NLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISY--LNVIAFTTL---LDGYIKIGDIGP 364 (785)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l---i~~~~~~g~~~~ 364 (785)
..|+++.|...+..+.+.+. ++......++..+.+......+.+.+..+.... ++...+... ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 55555555555555555442 222333333333333332222222221111000 000000000 000000011111
Q ss_pred HHHHHHhcCC---------C-CHhHHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCCC--------CHhhHHHH
Q 003937 365 ARRIFDSLRD---------R-DVVAWTAMLVGYEQ---NGLNKDAVELFRSMVR-----EGPKP--------NNYTLSAM 418 (785)
Q Consensus 365 A~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 418 (785)
....+..... + +...|......+.. .|++++|+..|+++.. ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111111 1 24444444444554 8999999999999987 32222 23456677
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGE 496 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~ 496 (785)
...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|++.... .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 77888999999999999999988644 888889999999999999999999987532 36778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 497 EAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
+|+..|++..+. .|+ ..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999984 454 568888999999999999999999998863 234577888999999999999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 576 M----PLEPD----VVAWGSLLSACRV---HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 576 ~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+ +-.|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 22232 4488999999999 99999999999999999999999999999999999999999999999876
Q ss_pred C
Q 003937 645 V 645 (785)
Q Consensus 645 ~ 645 (785)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=208.61 Aligned_cols=443 Identities=11% Similarity=0.015 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45666677778888888888888887754 677788888888888888888888888888775 455667777788888
Q ss_pred hCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHhhhcCC----CCcccHHHHHHHHhhCCCchHHHHH
Q 003937 192 KVGDEMMAKAVFDGMRLKN---VSSWNVVVSLHIHSGRLDLARAQFDQMIE----RDVVTWNSMIAGYSQNGYDFEALGM 264 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 264 (785)
+.|++++|...|+++...+ ......++..+.+......+.+.+..+.. ++...++.-..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------- 150 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-------------- 150 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH--------------
Confidence 8888888888877664221 11122222222221111111111111100 00000000000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC
Q 003937 265 FANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL 344 (785)
Q Consensus 265 ~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 344 (785)
.. ......|+.......+..+....... ....+.
T Consensus 151 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~ 184 (514)
T 2gw1_A 151 --RK-DKQENLPSVTSMASFFGIFKPELTFA-------------------------------------------NYDESN 184 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCS-------------------------------------------SCCSSC
T ss_pred --HH-hhccCCchhHHHHHHHhhcCHHHHHH-------------------------------------------HhcCCc
Confidence 00 00111122211111111110000000 000011
Q ss_pred chHhHHHHHHHHHh---cCCHHHHHHHHHhcCC-----------------CCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 345 NVIAFTTLLDGYIK---IGDIGPARRIFDSLRD-----------------RDVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 345 ~~~~~~~li~~~~~---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
+...+......+.. .|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12223333332222 4445555554444322 124566677777777888888888887777
Q ss_pred HcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHH
Q 003937 405 REGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSW 482 (785)
Q Consensus 405 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~ 482 (785)
... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++... +.+...|
T Consensus 265 ~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 265 ELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred hhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 654 336666677777777888888888877776653 33566778888899999999999999987642 2267788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHH
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMV 557 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li 557 (785)
..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+...-.++ ...+..+.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 88999999999999999999999884 44 4568888888999999999999999988753222222 33788899
Q ss_pred HHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 558 DLLGR---AGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 558 ~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
..|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999 99999999999887 3345 577888999999999999999999999999999877766555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=204.79 Aligned_cols=322 Identities=13% Similarity=0.075 Sum_probs=258.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 003937 312 TGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGY 387 (785)
Q Consensus 312 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 387 (785)
+...+..+...|.+.|++++|..+|+++....| +..+|..++..|.+.|++++|...|+.+.+ .+..+|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 345566777778888888888888887655444 677788888888888888888888887653 3567788888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----hhHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCchHHHH
Q 003937 388 EQNGLNKDAVELFRSMVREGPKPNN----YTLSAM------------LSVSSSLASLDHGKQIHASALRSGEASSLSVSN 451 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 451 (785)
.+.|++++|+..|+++... .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 8888888888888888764 4443 333333 334778899999999999888764 45678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------
Q 003937 452 ALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGV-------- 520 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-------- 520 (785)
.+..+|.+.|++++|.+.|+++.. +.+..+|..+...|...|++++|+..|+++.+ ..|+.. .+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998752 34788999999999999999999999999997 566654 34333
Q ss_pred ----HHHhhccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003937 521 ----LTACTHGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLL 589 (785)
Q Consensus 521 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 589 (785)
..+|.+.|++++|..+|+++.+ +.|+ ..++..+...|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 7789999999999999999986 3454 457889999999999999999999987 4455 588999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH------------HHHHhcC-----ChHHHHHHHHH
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALC------------NLYSSCG-----KWEDAANIRKS 641 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 641 (785)
.+|...|++++|...++++++++|+++.++..+. +.|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 4566666 55566666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=202.12 Aligned_cols=289 Identities=11% Similarity=0.057 Sum_probs=142.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHh--------cCCHHHHHHHHHhcCCC---C-------H
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIK--------IGDIGPARRIFDSLRDR---D-------V 377 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~f~~~~~~---~-------~ 377 (785)
...+..|....+.+.+...+.+.....+.. .....+...+.. .|++++|..+|+.+.+. + .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 444555666676666665555544444322 222222222221 13555666666555432 1 1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
.+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~------------ 308 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE------------ 308 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC------------
Confidence 13444445555556666666666665553 2334444444445555555555555555544432 22
Q ss_pred HhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
+..+|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|..+
T Consensus 309 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 309 --------------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444555555555555555554442 232 23444444455555555555555
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CCH
Q 003937 537 YNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEP----DVVAWGSLLSACRVH----------KNL 598 (785)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~ 598 (785)
++++.+. .+.+...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+... |++
T Consensus 367 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 367 FNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 5544431 1222334444555555555555555555443 0001 111223333444444 666
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
++|...++++++..|+++.++..++.+|...|++++|...+++..+
T Consensus 445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-19 Score=192.90 Aligned_cols=367 Identities=11% Similarity=-0.006 Sum_probs=239.3
Q ss_pred CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003937 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALI 320 (785)
Q Consensus 241 ~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (785)
+...|..+...+.+.|++++|+.+|++++.. .+.+..++..+..++...|+++.|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5677888999999999999999999998543 22356667777777777788888888887777765 33456677777
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCC-ch---HhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHH
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYL-NV---IAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDA 396 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 396 (785)
..|.+.|++++|.+.|+++....| +. .+|..++..+... .+..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 777777777777777777655555 33 4555554432111 111223335556666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-c
Q 003937 397 VELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-W 475 (785)
Q Consensus 397 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~ 475 (785)
+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. .
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666665532 2244455555666666666666666666665542 3345666777777777777777777777653 2
Q ss_pred CC-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCCHHHHHHHH
Q 003937 476 RQ-ETVSWTSM------------IVALAQHGLGEEAIQLFERMLELGIKPD-----HITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 476 ~p-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
.| +...|..+ ...+...|++++|+..|+++.+ +.|+ ...+..+..++.+.|++++|...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22 33344443 6777888888888888888877 4555 236677777888888888888888
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CH
Q 003937 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSA------------CRVHK-----NL 598 (785)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~ 598 (785)
+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ .+.|+ ...|..+..+ |...| +.
T Consensus 319 ~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 319 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 887652 2335677888888888888888888888877 55664 4455555422 22333 56
Q ss_pred HHHHHHHHH-HHhhCCCCch----------hHHHHHHHHHhcCChHHH
Q 003937 599 DLGKIAAEK-LLLIEPDNSG----------AYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 599 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 635 (785)
+++.+.+++ +++..|++.. .+..+..+|...|+.++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 677888886 6777775321 455566666666655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=195.11 Aligned_cols=431 Identities=12% Similarity=0.071 Sum_probs=273.4
Q ss_pred ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003937 110 SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNM 189 (785)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 189 (785)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887643 2356677777778888888888888888888775 4566777777788
Q ss_pred HHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhh
Q 003937 190 YAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269 (785)
Q Consensus 190 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml 269 (785)
|...|++++|...|+.+. . +....+..+..+...+...+|+..+++++
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 150 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L-------------------------------NGDFDGASIEPMLERNLNKQAMKVLNENL 150 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-------------------------------------------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHh-c-------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776432 1 11111222333444444566666666663
Q ss_pred hc-----CCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhc--------CChHHHH
Q 003937 270 KD-----SSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGP---VGNALISCYAKV--------GGVEIAQ 333 (785)
Q Consensus 270 ~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~--------g~~~~A~ 333 (785)
.. ....|+...+...+ ...+.+.+...+ ......+.. ....+...|... |++++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 151 SKDEGRGSQVLPSNTSLASFF----GIFDSHLEVSSV----NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp C-------CCCCCHHHHHHHH----HTSCHHHHHHTS----CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HhCccccccccchHhHHHHHH----HhcChHHHHHHH----hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 21 12233333332222 222222211111 011122222 444555444433 4889999
Q ss_pred HHHHHhCCCCCc--------hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 003937 334 KIVEQSGISYLN--------VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSM 403 (785)
Q Consensus 334 ~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 403 (785)
.+|+++....|+ ..++..+...+...|++++|...|+...+ |+...|..+...|...|++++|+..|+++
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999998777664 33577888899999999999999998864 56788888999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhH
Q 003937 404 VREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVS 481 (785)
Q Consensus 404 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~ 481 (785)
..... .+..++.. +...|...|++++|...|++... +.+...
T Consensus 303 ~~~~~-~~~~~~~~-----------------------------------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 303 VDLNP-EYPPTYYH-----------------------------------RGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp HHHCT-TCHHHHHH-----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred hccCC-CCHHHHHH-----------------------------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 87532 23344433 34445555555555555554421 114556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASM 556 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l 556 (785)
|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+...-.+ ....+..+
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 666677777777777777777777663 343 34666666677777777777777776654211111 12223344
Q ss_pred HHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 557 VDLLGRA----------GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 557 i~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
...|.+. |++++|.+.+++. ...| +..+|..+...+...|+.++|...+++++++.|++.....
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5666666 8899999888887 3345 5678888999999999999999999999999997665433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-15 Score=172.52 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=224.7
Q ss_pred hcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
..|++++|.++.++.. +..+|..+..++.+.|++++|...|... .|...|..++..+.+.|++++|++.|...+
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889888888663 3678999999999999999999999764 677788889999999999999999998877
Q ss_pred HcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH
Q 003937 405 REGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS 484 (785)
Q Consensus 405 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~ 484 (785)
+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~r 1226 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGR 1226 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHH
Confidence 654 44433445888899998888644442 1 345566677999999999999999999975 48999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
+...|.+.|++++|++.+++. -+..+|..+..+|...|.+..|...... +..+...+..++..|.+.|
T Consensus 1227 LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcC
Confidence 999999999999999999876 4457899999999999999999887643 3345667889999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCC-----CCchhHHHHHHHHHhcCChHHH
Q 003937 565 LLQEAYNFIENM-PLEPD-VVAWGSLLSACRV--HKNLDLGKIAAEKLLLIEP-----DNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 565 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a 635 (785)
.+++|..+++.. +++|. ...|.-|...+.+ -+++.++.+.|..-..+.| .+...|.-+.-.|.+.|.|+.|
T Consensus 1295 ~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred CHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999776 55553 4466555555544 4566677777777666666 5677899999999999999999
Q ss_pred HH
Q 003937 636 AN 637 (785)
Q Consensus 636 ~~ 637 (785)
..
T Consensus 1375 ~~ 1376 (1630)
T 1xi4_A 1375 II 1376 (1630)
T ss_pred HH
Confidence 85
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-15 Score=168.02 Aligned_cols=513 Identities=10% Similarity=0.060 Sum_probs=350.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHhhCC---------------CCCc----------------cH------HHHHHHH
Q 003937 77 KTLCSWNTILSAYAKQGRLDLACEVFNLMP---------------NRDS----------------VS------WTTIIVT 119 (785)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------------~~~~----------------~~------~~~li~~ 119 (785)
.|.......|.+.++.|.+.+..++-++-. -+|. +. ....|..
T Consensus 723 ~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~ 802 (1630)
T 1xi4_A 723 QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEI 802 (1630)
T ss_pred CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHH
Confidence 466677888888888888777766655421 1111 00 1234555
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCChhhHH-------------HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVT-------------SVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSL 186 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 186 (785)
|.+.-++..+-.+...++..+ -+..... -|+..+-+.+++......++.-+..| ..++.++|+|
T Consensus 803 yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 803 YVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 555544444444444443322 1222222 33344445555555666677777777 6789999999
Q ss_pred HHHHHhCCChHHHHHHHhcCC------------CCCcc----------hHHHHHHHHHhcCChHH-HHHHhhhc------
Q 003937 187 LNMYAKVGDEMMAKAVFDGMR------------LKNVS----------SWNVVVSLHIHSGRLDL-ARAQFDQM------ 237 (785)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~m~------------~~~~~----------~~~~li~~~~~~g~~~~-A~~l~~~~------ 237 (785)
...|...++-.+. .+.+=+ .+|+. .-..||...-+++.++. |+-+.++.
T Consensus 880 akiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 880 AKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 9999976653332 221111 12221 12234444444444432 33333322
Q ss_pred --C---------------------CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhcccc
Q 003937 238 --I---------------------ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS-LKPDKFTLASTLSACANLEK 293 (785)
Q Consensus 238 --~---------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g-~~p~~~t~~~ll~~~~~~~~ 293 (785)
. ..|+.--...+.+|...|.+.+|++++++.+.... +.-+...-+.++.+..+. +
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D 1036 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D 1036 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C
Confidence 0 01222234567888999999999999999842211 011122223344444444 4
Q ss_pred hhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003937 294 LKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR 373 (785)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 373 (785)
...+.++....- ......+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++..
T Consensus 1037 ~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn 1103 (1630)
T 1xi4_A 1037 RTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN 1103 (1630)
T ss_pred hhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC
Confidence 454444444332 22245577888899999999999999742 1222333322 7789999999999774
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 374 DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
+..+|..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|+++++.+.+...++.. ++..+.+.+
T Consensus 1104 --~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 4678999999999999999999999653 466778889999999999999999999888765 444444569
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
+..|++.+++++..... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|
T Consensus 1174 afaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 99999999998644443 3447778888999999999999999999985 3799999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+.+++.. +..+|..+..++...|++..|....... .-++..+..++..|...|.+++|+.++++.+.++|
T Consensus 1241 IEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1241 VDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 99998763 4578888888999999999999887654 34555667899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhc--CChHHHHHHHH
Q 003937 614 DNSGAYSALCNLYSSC--GKWEDAANIRK 640 (785)
Q Consensus 614 ~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 640 (785)
.+.+.|.-|..+|++. ++..|+.++|.
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998888888765 46666666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=171.14 Aligned_cols=304 Identities=13% Similarity=0.059 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHc
Q 003937 315 VGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQN 390 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 390 (785)
.+..+...|.+.|++++|...|++.....| +..+|..+...+...|++++|...|+.+.+ .+...|..+...|.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 445666777888888888888887655544 567788888888888888888888887653 3567788888888888
Q ss_pred CChhHHHHHHHHHHHcCCCC---CHh-hHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKP---NNY-TLSAM------------LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p---~~~-t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
|++++|+..|++.... .| +.. .+..+ ...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 8888888888888764 44 222 22222 244555566666666666555543 23445555566
Q ss_pred HHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH------------H
Q 003937 455 TMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYV------------G 519 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~------------~ 519 (785)
..|...|++++|...|++.... .+...|..+...|...|++++|+..|++..+ ..|+.. ++. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654321 2455566666666666666666666666655 233322 111 1
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-----hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-----SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 592 (785)
+...+...|++++|...++.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 133455555666666655555441 1221 12333445555555666665555554 2233 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
...|++++|...++++++++|+++.....+..++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5556666666666666655555555555444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-18 Score=173.51 Aligned_cols=400 Identities=15% Similarity=0.120 Sum_probs=185.0
Q ss_pred ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 91 KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 91 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886654 7888888888888888888888652 5777888888888889999999998887
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHH
Q 003937 171 VVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIA 250 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~ 250 (785)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45678889999999999999998888864 66679999999999999999999999987 48999999
Q ss_pred HHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChH
Q 003937 251 GYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVE 330 (785)
Q Consensus 251 ~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 330 (785)
++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +..++.-...++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999887 3678999999999999999998543332 2233333457889999999999
Q ss_pred HHHHHHHHhCCCCC-chHhHHHHHHHHHh--cCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 331 IAQKIVEQSGISYL-NVIAFTTLLDGYIK--IGDIGPARRIFDSLRD--------RDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 331 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~--~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
+|.+++++....++ ....|+-+.-.|++ -+++.+..+.|..-.. .+...|..+...|.+.++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999999655544 56677777766665 4677788888875443 2567899999999999999999864
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCCh
Q 003937 400 FRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479 (785)
Q Consensus 400 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~ 479 (785)
|.+. .|+...-..+.....+..+.+.--+....-+.. .|. ..|-|+......=+...+.++|+....-|=+
T Consensus 305 ---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 305 ---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp ---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred ---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 4443 233333333344444445444433333333321 222 2455555555555666666666655433333
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
..|-.- .+..+....-+.+.++.- -.-|-.+...-+.+|-.-....-|.+
T Consensus 376 ~~yl~~----v~~~n~~~vnealn~l~i--eeed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 376 KPYLRS----VQNHNNKSVNESLNNLFI--TEEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHH----HHTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHH----HHHhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 322211 112222222222333221 13345555555556655555554444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-16 Score=163.93 Aligned_cols=295 Identities=15% Similarity=0.084 Sum_probs=245.6
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
++..+..+...+.+.|++++|...|+.+.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456788899999999999999999998764 467889999999999999999999999998763 2255678888889
Q ss_pred HhccCchHHHHHHHHHHHHhCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhccc--CCChhHHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEA--SSLSVSNAL------------ITMYSKAGNINAARRVFNLIHW--RQETVSWTSM 485 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~l 485 (785)
+...|+++.|...+..+.+.... .+...+..+ ...+...|++++|.+.|+++.. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999876421 234444444 5788999999999999998742 2367789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHH---------
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFA--------- 554 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 554 (785)
...|...|++++|+..++++.+. .| +..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 99999999999999999999984 45 4568889999999999999999999998762 344 23222
Q ss_pred ---HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 555 ---SMVDLLGRAGLLQEAYNFIENM-PLEPD-VV----AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 555 ---~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+.+.|++++|.+.+++. ...|+ .. .|..+...+...|++++|...++++++.+|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999987 33454 32 345567788999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|...+++..+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=160.53 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=193.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 003937 310 DATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLV 385 (785)
Q Consensus 310 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 385 (785)
+.+..+...+...+...|++++|.++|+++....| +...+..++..+.+.|++++|...|+++.+ .+...|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 44555566666667777766666666666444333 344455555555555555555555555432 23445555555
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 003937 386 GYEQNG-LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNIN 464 (785)
Q Consensus 386 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 464 (785)
.+...| ++++|+..|++.... . +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL-----------------------------------E-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT-----------------------------------C-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHHHHHHHccCHH
Confidence 555555 555555555555432 1 223444566777777777777
Q ss_pred HHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 465 AARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 465 ~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+|...|++... +.+...|..+...|...|++++|++.|++..+. .|+ ..++..+...+...|++++|...++++.
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777776542 224566777778888888888888888888773 444 4577777778888888888888887776
Q ss_pred hcC-------CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 542 NVH-------KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 542 ~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+.. ..+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 521 11334667888889999999999999988887 3334 56788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-HhcCChH
Q 003937 613 PDNSGAYSALCNLY-SSCGKWE 633 (785)
Q Consensus 613 p~~~~~~~~l~~~~-~~~g~~~ 633 (785)
|+++..+..++.++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999888 4555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=163.26 Aligned_cols=342 Identities=14% Similarity=0.091 Sum_probs=127.1
Q ss_pred CChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHH
Q 003937 225 GRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYI 304 (785)
Q Consensus 225 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (785)
|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++.+...+...
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344444444444244 37777777777777777777777543 56667777777777777887777777766
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH
Q 003937 305 IRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAML 384 (785)
Q Consensus 305 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 384 (785)
++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+ ..|..++
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -----------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 663 4557788899999999999998887775 356678888889999999999999999877 3688888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 003937 385 VGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNIN 464 (785)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 464 (785)
.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.-...++..|.+.|.++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 8888888888888888877 2667777777777777777777332221 1112222223444444444444
Q ss_pred HHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 465 AARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 465 ~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+|..+++... .+.....|+-|.-.|++ .+.+.+.+..+.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~k---------------------------------y~p~k~~ehl~~~~~--- 268 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSK---------------------------------FKPQKMREHLELFWS--- 268 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHHST---
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHh---------------------------------cCHHHHHHHHHHHHH---
Confidence 4444444332 11123333333333333 233333333333321
Q ss_pred cCCCCC------CchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 543 VHKIKP------TPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 543 ~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
.-.++| +..+|.-++-.|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..-.++..|
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p--- 343 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP--- 343 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---
Confidence 123333 35567777788888888888777554432 2322223333344455555544444444443333
Q ss_pred hhHHHHHHHHHhcCChHHHHHHH
Q 003937 617 GAYSALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~ 639 (785)
...+.|+.++...=+...+.+++
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHH
Confidence 23444444444433444333333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=152.52 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=196.4
Q ss_pred HHhcCChHHHHHHHHHhCCCCCch--HhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISYLNV--IAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
....|++..|+..+++.....|+. .....+.++|...|++++|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 445677777777766665555532 344555666666666666666665543344555555666666666666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChh
Q 003937 401 RSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETV 480 (785)
Q Consensus 401 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~ 480 (785)
+++...+..|+. ...+..+...|...|++++|.+.|++ ..+..
T Consensus 89 ~~ll~~~~~P~~----------------------------------~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~ 131 (291)
T 3mkr_A 89 DREMSRSVDVTN----------------------------------TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE 131 (291)
T ss_dssp HHHHHSCCCCSC----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH
T ss_pred HHHHhcccCCCC----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH
Confidence 666655444543 33345566788899999999999988 34788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITY---VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
.+..++..|.+.|+.++|++.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 8999999999999999999999999984 5765421 22334445668999999999999873 456788899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL-GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
..|.+.|++++|.+.+++. ...| +..+|..++..+...|+.++ +..+++++++++|+++.+ .+...+.+.+++
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~ 283 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDR 283 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHH
Confidence 9999999999999999987 4556 57789999999999998865 678999999999988754 345666666666
Q ss_pred HHHH
Q 003937 635 AANI 638 (785)
Q Consensus 635 a~~~ 638 (785)
+..-
T Consensus 284 ~~~~ 287 (291)
T 3mkr_A 284 LVLQ 287 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-16 Score=162.95 Aligned_cols=258 Identities=13% Similarity=0.024 Sum_probs=191.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 2234445555555666666666666666665553 33556666777777
Q ss_pred HhcCCHHHHHHHHHhcccC-C-ChhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 003937 458 SKAGNINAARRVFNLIHWR-Q-ETVSWTS---------------MIVALAQHGLGEEAIQLFERMLELGIKPD---HITY 517 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p-~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~ 517 (785)
...|++++|.+.|+++... | +...+.. .+..+...|++++|+..|+++.+. .|+ ..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 7777777777777765422 2 2222211 233344889999999999999984 555 6788
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 88999999999999999999998762 2334678899999999999999999999987 3445 577899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDN-----------SGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
|++++|...+++++++.|++ ..+|..++.+|...|++++|..++++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999998877 78999999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-14 Score=157.76 Aligned_cols=209 Identities=9% Similarity=0.027 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc--CC-ChhHHHHHHHHHHHc
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYSK-------AGNIN-------AARRVFNLIHW--RQ-ETVSWTSMIVALAQH 492 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~--~p-~~~~~~~li~~~~~~ 492 (785)
.+..+++.++.. .+.+..+|..+...+.+ .|+++ +|..+|++... .| +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 444455555554 23345555566665554 56665 67777776542 23 456677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHH-HhhcCCHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDL-LGRAGLLQE 568 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 568 (785)
|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+. .|. ...|.....+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 777777777777777 45543 35666666666777777777777777642 222 2222222222 235677777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 569 AYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG----AYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 569 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .|...+......|+.+.+..+.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777765 2334 4667777777777777777777777777776654443 5666666667777777777777776
Q ss_pred Hh
Q 003937 643 KY 644 (785)
Q Consensus 643 ~~ 644 (785)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-15 Score=152.90 Aligned_cols=263 Identities=13% Similarity=0.072 Sum_probs=214.5
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
+...+..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455666677777777777777777776643 2233445556666777778888888877777753 345667788889
Q ss_pred HHHhcC-CHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHH
Q 003937 456 MYSKAG-NINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVE 531 (785)
Q Consensus 456 ~y~~~g-~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 531 (785)
.|...| ++++|...|++.... | +...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 999999999987532 3 5778999999999999999999999999984 454 457777888999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL----------EPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
+|...++++.+ ..+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 23445778899999999999999999999877 11 2346789999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...+++++++.|+++..+..++.+|...|++++|...+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-14 Score=153.49 Aligned_cols=321 Identities=9% Similarity=-0.014 Sum_probs=230.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAK----VGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIK----IGDI 362 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 362 (785)
.++.+.|...+....+.| +...+..|..+|.. .+++++|.+.|++....+ +..++..+...|.. .++.
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCH
Confidence 444455555554444433 33444455556665 566777777776644332 45666666666766 6677
Q ss_pred HHHHHHHHhcCC-CCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHH
Q 003937 363 GPARRIFDSLRD-RDVVAWTAMLVGYEQ----NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQ 433 (785)
Q Consensus 363 ~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~ 433 (785)
++|...|+...+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 888877776544 466677777777777 788888888888877754 34445555555543 678888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHHc-----CChHHHHHHHHH
Q 003937 434 IHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQH-----GLGEEAIQLFER 504 (785)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 504 (785)
.+....+.| +...+..|..+|.. .++.++|...|++.....+...+..+...|... ++.++|+..|++
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 888877664 34556677777877 889999999999887665778888888888887 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhCC
Q 003937 505 MLELGIKPDHITYVGVLTACTHGG---LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENMP 577 (785)
Q Consensus 505 m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 577 (785)
..+.| +...+..+...+...| ++++|.++|++..+ . .+...+..|..+|.. .++.++|.+.|++.-
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 98864 3455666666666656 78899999998876 2 456778888888888 889999999998873
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 003937 578 LEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPD---NSGAYSALCNLYSS 628 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 628 (785)
-..+...+..|...|.. .++.++|...++++.+.+|+ ++.....|..++..
T Consensus 395 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 395 EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 23467788888888887 89999999999999998853 56666666555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=152.77 Aligned_cols=398 Identities=10% Similarity=0.076 Sum_probs=272.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHhhhcCC--C-CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003937 209 KNVSSWNVVVSLHIHSGRLDLARAQFDQMIE--R-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTL 285 (785)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll 285 (785)
.+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++.+.. .|+...+...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 36778999998 5789999999999999854 3 5567999999999999999999999999432 47766655555
Q ss_pred HHH-hcccchhhHHH----HHHHHHHh-cCCC-CcchHHHHHHHHHh---------cCChHHHHHHHHHhCCCCCc--hH
Q 003937 286 SAC-ANLEKLKLGKQ----IHAYIIRT-EFDA-TGPVGNALISCYAK---------VGGVEIAQKIVEQSGISYLN--VI 347 (785)
Q Consensus 286 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~~~~~--~~ 347 (785)
... ...++.+.+++ +++..++. |..| +..+|...+....+ .|+++.|.++|++....+.+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 422 34566666655 66666554 5544 45677888877665 78899999999997764322 23
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHh-------cC------CCC--------HhHHHHHHHHHHHc---
Q 003937 348 AFTTLLDGY-------------IKIGDIGPARRIFDS-------LR------DRD--------VVAWTAMLVGYEQN--- 390 (785)
Q Consensus 348 ~~~~li~~~-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~--- 390 (785)
.|....... .+.++++.|..++.. +. .|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444333311 124456677766654 11 111 24566555433332
Q ss_pred -CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCchHHHH
Q 003937 391 -GLN----KDAVELFRSMVREGPKPNNYTLSAMLSVSSS-------LASLD-------HGKQIHASALRSGEASSLSVSN 451 (785)
Q Consensus 391 -g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~ 451 (785)
++. ++|+.+|++.+... +-+...|......+.+ .|+++ .|..++...++.-.+.+..++.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 36777888877642 2234455555555553 67776 7888888877633455678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-CC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-hhc
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR-QE-T-VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTA-CTH 526 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~-p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~ 526 (785)
.++..+.+.|++++|..+|++.... |+ . ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence 8888888888999998888876433 33 2 47888888888888888899888888874 343 2233322222 235
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPD--VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~ 600 (785)
.|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 788888988888877622 234677888888888888998898888887 22332 4478888888888888888
Q ss_pred HHHHHHHHHhhCCCC
Q 003937 601 GKIAAEKLLLIEPDN 615 (785)
Q Consensus 601 a~~~~~~~~~~~p~~ 615 (785)
+..+.+++.+..|++
T Consensus 482 ~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 482 ILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCchh
Confidence 888888888888843
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-15 Score=157.58 Aligned_cols=272 Identities=14% Similarity=0.068 Sum_probs=163.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 389 (785)
..+..+...|.+.|++++|...|+++....| +..+|..+...|.+.|++++|...|+.+.+ .+..+|..+...|..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3445566667777777777777777555444 566777777888888888888888876643 467788888888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|+..|+++.... |+.......+ +.... ...+ ......+...+ ..|++++|...
T Consensus 145 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHH
Confidence 999999999999888753 3322211100 00000 0000 00001112222 55666666666
Q ss_pred HHhcc-cCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 470 FNLIH-WRQ---ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 470 ~~~~~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
|+++. ..| +...|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+.
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 280 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 280 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 66543 112 3455666666666666666666666666652 343 346666666666666666666666666541
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP------------DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.+...+..+...|.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.++
T Consensus 281 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 281 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 1223555666666666667776666666655 1111 156777777777788888877777765544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-13 Score=148.55 Aligned_cols=338 Identities=14% Similarity=0.034 Sum_probs=275.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAK----VGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIK----IGDI 362 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 362 (785)
.++++.|...+....+.| +...+..|...|.. .++.++|.+.|++....+ +..++..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCH
Confidence 445555555555555442 34456677788888 899999999999865543 67788889999998 8899
Q ss_pred HHHHHHHHhcCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHH
Q 003937 363 GPARRIFDSLRDR-DVVAWTAMLVGYEQ----NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQ 433 (785)
Q Consensus 363 ~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~ 433 (785)
++|...|+...+. +...+..+...|.. .++.++|++.|++..+.| +...+..+-..+.. .++.++|..
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 9999999987654 67788888888887 789999999999998875 55666666666666 789999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHH
Q 003937 434 IHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERM 505 (785)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 505 (785)
.+....+.| +......|..+|.. .+++++|...|++.....+...+..+...|.. .++.++|++.|++.
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 999998876 55677788888886 89999999999988766688888888888888 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC---CHHHHHHHHHhCC
Q 003937 506 LELGIKPDHITYVGVLTACTHG-----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG---LLQEAYNFIENMP 577 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~ 577 (785)
.+.| +...+..+...+... +++++|..++++..+ . .+...+..|..+|.+.| +.++|.++|++.-
T Consensus 286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 8764 445666677777766 899999999999886 2 24566777888887767 8899999999883
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003937 578 LEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS----CGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 647 (785)
-..+...+..|...|.. .++.++|...++++.+.. ++..+..|+.+|.. .+++++|..++++..+.|.
T Consensus 359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 23578888999988888 899999999999998864 57889999999998 8999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-17 Score=179.67 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=98.0
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc------cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 443 EASSLSVSNALITMYSKAGNINAARRVFNLIH------WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 443 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
...-..+||+||++|+++|++++|.++|++|. ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34445677888888888888888888886653 247888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhccCC-HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 517 YVGVLTACTHGGL-VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 517 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 8888888887776 4677788888876 678888888888777776665555554443333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=159.07 Aligned_cols=258 Identities=10% Similarity=-0.016 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+...+..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666665542 2234455555666666666666666666666553 33456677777888
Q ss_pred HhcCCHHHHHHHHHhcccC-CC-----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWR-QE-----------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP---DHITYVGVLT 522 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~ 522 (785)
.+.|++++|...|+++... |+ ...+..+...+...|++++|+..|+++.+. .| +..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHH
Confidence 8888888888888776421 11 223345577888999999999999999984 45 4678888999
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998762 2345778999999999999999999999887 4455 47889999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPD------------NSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 601 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
|...+++++++.|+ +...+..|..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367899999999999999998877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=156.81 Aligned_cols=232 Identities=11% Similarity=0.025 Sum_probs=195.6
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~ 488 (785)
+...+......+.+.|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++... +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 45688899999999999999999999998742 2367899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HH----------HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHI-TY----------VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
|...|++++|+..|+++.+ +.|+.. .+ ..+...+...|++++|..+++++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 455543 22 3347788999999999999999987432223678899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3445 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003937 636 ANIRKSMKYV 645 (785)
Q Consensus 636 ~~~~~~m~~~ 645 (785)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=177.88 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
..+||++|.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G 174 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence 357777777777777777777777666532 122344555555667777
Q ss_pred HHhcCCHHHHHHHHHhcc---cCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH
Q 003937 457 YSKAGNINAARRVFNLIH---WRQETVSWTSMIVALAQHGLG-EEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 532 (785)
|++.|++++|.++|++|. .+||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 777777777777777775 337888888888888988874 7889999999999999999999999877766544333
Q ss_pred HHHHHHHhhhcCCCCCC------chhHHHHHHHHhhcC
Q 003937 533 GQRYYNMMKNVHKIKPT------PSHFASMVDLLGRAG 564 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g 564 (785)
.+++.. ++.|+ +.+..-|.+.|.+.+
T Consensus 255 ----Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 ----VHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----HGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 344432 34443 455566778888766
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=146.45 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=159.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHW---RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
+|+...+..+...|...|+.++|.+.++++.. .| +...+..+...|.+.|++++|++.|++ ..+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 34455567788889999999999999998642 24 455677777899999999999999987 456678888
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH---HHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF---ASMVDLLGRAGLLQEAYNFIENM-P-LEPDVVAWGSLLSACRV 594 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 594 (785)
+...+.+.|++++|.+.++.+.+. .|+.... .+++..+...|++++|..+|+++ . .+.+...|+.+..++..
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999863 4664321 23445555669999999999998 2 23468899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED-AANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 645 (785)
.|++++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 56888888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-14 Score=147.66 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=180.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSS 423 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 423 (785)
..|..+...+...|++++|...|+++.+ .+...|..+...+.+.|++++|+..|+++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------ 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------
Confidence 3445555555555555555555555432 2344455555555555555555555555544
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHH--------------HH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSM--------------IV 487 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l--------------i~ 487 (785)
.. +.+...+..+...|...|++++|.+.|+++... | +...+..+ ..
T Consensus 84 -----------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 84 -----------------LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -----------------cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 32 223445556666667777777777777665322 2 22223222 22
Q ss_pred -HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 488 -ALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 488 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.+...|++++|+..++++.+.. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788999999999998842 235568888888999999999999999988762 234467888999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCh
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD------------NSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~ 632 (785)
++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999887 3344 5778999999999999999999999999999998 688999999999999999
Q ss_pred HHHHHHHHHH
Q 003937 633 EDAANIRKSM 642 (785)
Q Consensus 633 ~~a~~~~~~m 642 (785)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-13 Score=148.51 Aligned_cols=363 Identities=12% Similarity=0.040 Sum_probs=206.9
Q ss_pred cccHHHHHHHHhhCCCchHHHHHHHHhhhc----CC--CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKD----SS--LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~ml~~----~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
...||.|...+...|++++|++.|++.+.- .+ ..|+ ...+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~----------------------------------~~~~ 96 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR----------------------------------SLVT 96 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT----------------------------------THHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH----------------------------------HHHH
Confidence 456777878888888888888888776321 00 1111 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCC-------C-CC-chHhHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-CHhHHH
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGI-------S-YL-NVIAFTTLLDGYIKI--GDIGPARRIFDSLRD--R-DVVAWT 381 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~-~~-~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~~ 381 (785)
++.+...|...|++++|...+++... . .+ ...++..+..++.+. +++++|...|++..+ | ++..+.
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44444555555555555555443211 0 11 233444444444433 356677777766542 2 344444
Q ss_pred HHHHH---HHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 382 AMLVG---YEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSS----SLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 382 ~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
.+... +...++.++|++.|++..+. .|+ ...+..+...+. ..++.+.|.+.+....... +.+..++..+
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~l 253 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 44333 33456667777777776654 333 333333333332 3456677777777776653 3455666777
Q ss_pred HHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCC
Q 003937 454 ITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQ-------------------HGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p 512 (785)
...|.+.|++++|...|++.. ..| +..+|..+...|.. .+..++|+..|++..+ ..|
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AND 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCC
Confidence 788888888888888887653 223 44556555554432 2235678888888877 455
Q ss_pred CH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCch----hHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 003937 513 DH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPS----HFASMVD-LLGRAGLLQEAYNFIENM-PLEPDVVAW 585 (785)
Q Consensus 513 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 585 (785)
+. .++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 54 4788888899999999999999998875 233322 2223332 234678999999998876 567775544
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSW 655 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 655 (785)
... .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 333 2445677888889999999999999999999999999999999998766543333333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=141.89 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=134.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 389 (785)
..+..+...+...|++++|..+|+++....| +..+|..+...+.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3455667778888888888888888655544 677888888888889999999998887753 467788889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHH--------------HH--HhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAML--------------SV--SSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
.|++++|+..|+++... .|+.......+ .. +...|++++|...+..+.+.. +.+..++..+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 99999999999999875 33332222221 21 444555555555555555443 2234444555
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCH
Q 003937 454 ITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLV 530 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 530 (785)
...|.+.|++++|.+.|++... +.+...|..+...|...|++++|+..|+++.+. .|+ ..++..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 5555555555555555554321 113444555555555555555555555555442 222 33444444455555555
Q ss_pred HHHHHHHHHhh
Q 003937 531 EQGQRYYNMMK 541 (785)
Q Consensus 531 ~~a~~~~~~m~ 541 (785)
++|...++++.
T Consensus 257 ~~A~~~~~~a~ 267 (327)
T 3cv0_A 257 DLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=142.82 Aligned_cols=381 Identities=12% Similarity=-0.014 Sum_probs=227.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHhhhcC-----------C-CCcccHHHHHHHHhhCCCchHHHHHHHHhhhc---C--C
Q 003937 211 VSSWNVVVSLHIHSGRLDLARAQFDQMI-----------E-RDVVTWNSMIAGYSQNGYDFEALGMFANMLKD---S--S 273 (785)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~l~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~---~--g 273 (785)
...||.|...+...|++++|++.|++.. . ...++|+.+...|...|++++|...+++.+.- . .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 5679999999999999999999998752 1 24568999999999999999999999887431 1 1
Q ss_pred CCCC-hhhHHHHHHHHh--cccchhhHHHHHHHHHHhcCCCCcchHHHHHHH---HHhcCChHHHHHHHHHhCCCCC-ch
Q 003937 274 LKPD-KFTLASTLSACA--NLEKLKLGKQIHAYIIRTEFDATGPVGNALISC---YAKVGGVEIAQKIVEQSGISYL-NV 346 (785)
Q Consensus 274 ~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~~~~~~~-~~ 346 (785)
..++ ..++...-.++. ..++++.|...|+.+++.. +.+...+..+... +...++.++|.+.+++.....| +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1222 233433333333 3457888999998888764 2233444444444 3456777788888877554444 55
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh-hHHHH
Q 003937 347 IAFTTLLDGYIK----IGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY-TLSAM 418 (785)
Q Consensus 347 ~~~~~li~~~~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 418 (785)
.++..+...+.. .|+.++|...++.... .+...|..+...|.+.|++++|+..|++..+. .|+.. ++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 666666555544 4567788888876543 45677888888888888888888888888764 45433 33333
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGE 496 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~ 496 (785)
...+...+. .. .... . ..........+..+.|...|+... .+.+..+|..+...|...|+++
T Consensus 288 g~~y~~~~~-----~~----~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVF-----QV----MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHH-----HH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHH-----Hh----hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 222211100 00 0000 0 001111112234577788887653 2235678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 497 EAIQLFERMLELGIKPDHI--TYVGVLT-ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
+|++.|++..+....|... .+..+.. .....|+.++|...|.+..+ +.|+........ +.+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333221 2333332 34578999999999998875 456543332222 2333444
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 574 ENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 574 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
++. ...| +..+|..|...+...|+.++|+..+++++++.|.+|.+..-+
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 333 2244 577899999999999999999999999999998877665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=130.25 Aligned_cols=195 Identities=16% Similarity=0.060 Sum_probs=156.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHW-R-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGV 520 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 520 (785)
+++...+..+...+.+.|++++|...|++... . .+...|..+...+.+.|++++|+..|++..+ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667778888999999999999999998643 2 3677899999999999999999999999998 56765 588888
Q ss_pred HHHhhcc-----------CCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003937 521 LTACTHG-----------GLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGS 587 (785)
Q Consensus 521 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 587 (785)
..++... |++++|...+++..+ +.|+ ...+..+...|...|++++|.+.|++. .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999886 3454 677888999999999999999999987 22267889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-13 Score=131.12 Aligned_cols=220 Identities=11% Similarity=0.001 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+...|++++|+..|++..+.. ++ ...+..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHH
Confidence 345556666666666666666666665543 33 34445556666
Q ss_pred HhcCCHHHHHHHHHhcccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 458 SKAGNINAARRVFNLIHWR-----QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-----p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
...|++++|...|++.... |+ ...|..+...|...|++++|+..|++..+ +.|+.. .+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHh
Confidence 6666666666666654311 11 46677788888888888888888888887 456533 345567
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
++++|...++.+.. ..+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78888888888775 22233566778888888889999998888887 3334 57788889999999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=129.52 Aligned_cols=237 Identities=10% Similarity=0.029 Sum_probs=175.5
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHH
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGP--KPNNYTLSAMLSV 421 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a 421 (785)
...|..+...+...|++++|...|+...+ .+...|..+...|...|++++|+..|++...... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 56789999999999999999999987643 6778899999999999999999999999876321 11110
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
....++..+...|.+.|++++|...|++... .|+. ..+...|++++|+.
T Consensus 77 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 -----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHH
Confidence 0123445666677777777777777776542 2332 34555677888888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 501 LFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 501 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
.++++.. ..|+. ..+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888877 45544 46777777888888888888888887752 2334667788888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE------PDNSGAYSALCN 624 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 624 (785)
.| +..+|..+...+...|+.++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 44 47788888888999999999999999999988 766655554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=129.16 Aligned_cols=241 Identities=11% Similarity=-0.074 Sum_probs=176.4
Q ss_pred cCChhHHHHHHHHHHHcCCC--C-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPK--P-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666654211 1 23445555556666666666666666666653 33566778888889999999999
Q ss_pred HHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 467 RRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 467 ~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
.+.|++... +.+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999987642 23678899999999999999999999999998 5676665555556667779999999999877652
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777888888899999998887 33332 5688889999999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 003937 619 YSALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 619 ~~~l~~~~~~~g~~~~a~~~~ 639 (785)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66778889999987765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=132.35 Aligned_cols=237 Identities=8% Similarity=0.045 Sum_probs=135.7
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHH
Q 003937 361 DIGPARRIFDSLRDRDVVAWTAMLVGYEQNG---LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHAS 437 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 437 (785)
..+++..++......++..+..+...|.+.| +.++|+..|++....|.. +...+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~---------------------- 216 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRV---------------------- 216 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHH----------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHH----------------------
Confidence 4455666666666666667777877888888 777888888877776522 22221
Q ss_pred HHHhCCCCchHHHHHHHHHHHhc----CCHHHHHHHHHhcccCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 003937 438 ALRSGEASSLSVSNALITMYSKA----GNINAARRVFNLIHWRQETVSWTSMIVA-L--AQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 438 ~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~ 510 (785)
..|..+|... +++++|.+.|++.. +.+...+..|... | ...++.++|++.|++..+.|
T Consensus 217 -------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 217 -------------DSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp -------------HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 2233333322 46666666666655 4355566666555 3 34667777777777776655
Q ss_pred CCCHHHHHHHHHHhhccC-----CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC
Q 003937 511 KPDHITYVGVLTACTHGG-----LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENMPLEPD 581 (785)
Q Consensus 511 ~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~ 581 (785)
+...+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..+.++|.++|++.--.-+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4444445555444 33 6777777776553 2344555556655554 2377777777777622223
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 582 VVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 582 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
......|...|.. ..+.++|...++++.+..+.+.......+......++.++|..+.++..
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444455554442 4577888888888777654332222222222223345566666665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=127.95 Aligned_cols=246 Identities=11% Similarity=0.012 Sum_probs=128.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSS 423 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 423 (785)
..+......+.+.|++++|...|+...+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 3445556666666777777776666543 234466666666666666666666666666532 12111
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 501 (785)
....+..+...|...|++++|.+.|++... +.+...|..+...|...|++++|+..
T Consensus 73 ----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 111233444444445555555555544321 11334455555555555555555555
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCC---HHHHHHHHHhC
Q 003937 502 FERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGL---LQEAYNFIENM 576 (785)
Q Consensus 502 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~ 576 (785)
|++..+. .|+. ..+..+...+...+++++|...|+++.+. .|+ ...+..+...+...|+ .++|...+++.
T Consensus 131 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 131 MEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 5555442 3322 23333331222333555555555555431 222 3344444444444444 44444444333
Q ss_pred ----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 577 ----PLEPD------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 577 ----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888889999999999999999999988887777766654443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-10 Score=125.95 Aligned_cols=217 Identities=7% Similarity=-0.030 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGK-QIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
.+..+|++.+.. ..-+...|.....-+...|+.+.|. .++...+.. ++.+..++-.++..+-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455677777664 2224555666666667778888886 999988864 4566777788888899999999999999876
Q ss_pred ccC------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-c
Q 003937 474 HWR------------QE------------TVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGVLTACTH-G 527 (785)
Q Consensus 474 ~~~------------p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 527 (785)
... |+ ...|...+....+.|..+.|..+|.+.++. +. +....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhC
Confidence 431 32 236888888888889999999999999885 21 122233322222223 3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 003937 528 GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP----DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 528 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
++.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5589999999998873 3445666778899999999999999999997 2233 2468999999889999999999
Q ss_pred HHHHHHHhhCCCCc
Q 003937 603 IAAEKLLLIEPDNS 616 (785)
Q Consensus 603 ~~~~~~~~~~p~~~ 616 (785)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-11 Score=118.06 Aligned_cols=223 Identities=11% Similarity=-0.041 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQIHASALRSGEASSLSVSNA 452 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 452 (785)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3445555555555666666666666555421 22223333333333 444444444444444333 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 453 LITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 453 li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
+..+|.. .|++++|...|++.....+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 55555555555554433355555555555555 555666666665555543 233344444444
Q ss_pred hc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 003937 525 TH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENM-PLEPDVVAWGSLLSACRV- 594 (785)
Q Consensus 525 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~- 594 (785)
.. .+++++|..+|++..+ . .+...+..+..+|.+ .+++++|.+.+++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 44 5555555555555443 1 123334444444444 44555555444443 111 13334444444444
Q ss_pred ---cCCHHHHHHHHHHHHhhCC
Q 003937 595 ---HKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 595 ---~g~~~~a~~~~~~~~~~~p 613 (785)
.++.++|...++++.+.+|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444555555555544444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=9e-11 Score=117.72 Aligned_cols=225 Identities=12% Similarity=-0.007 Sum_probs=193.4
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMI 486 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li 486 (785)
+..++..+-..+...+++++|...+....+. .+...+..+...|.. .|++++|...|++.....+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445666667788889999999999999983 456777889999999 999999999999886665888999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 487 VALAQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 487 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999865 66788888888888 9999999999999886 33 5667778888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh--
Q 003937 559 LLGR----AGLLQEAYNFIENMPLEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS-- 628 (785)
Q Consensus 559 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 628 (785)
.|.. .++.++|.+.+++.--..+...+..+...+.. .++.++|...++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987222356788888888988 9999999999999999876 6788999999999
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 003937 629 --CGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 629 --~g~~~~a~~~~~~m~~~g~ 647 (785)
.|++++|.+++++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=120.25 Aligned_cols=196 Identities=10% Similarity=-0.030 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTA 523 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 523 (785)
...+..+...|...|++++|.+.|+++.. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34556677777888888888888876642 225667788888888888888888888888774 34 45577777778
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
+...|++++|..+++++.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888765 33344 3556777788888888888888888776 2334 46778888888888888888
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=132.35 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCCHhhHHH
Q 003937 348 AFTTLLDGYIKIG---DIGPARRIFDSLRD---RDVVAWTAMLVGYEQN----GLNKDAVELFRSMVREGPKPNNYTLSA 417 (785)
Q Consensus 348 ~~~~li~~~~~~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ 417 (785)
++..+...|.+.| +.++|...|+...+ ++...+..+...|... +++++|+..|++.. .|. ...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHH
Confidence 5555555555555 55555555554432 2222223444444332 45666666666655 221 122222
Q ss_pred HHHH-H--hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHhcccCCChhHHHHHHHHH
Q 003937 418 MLSV-S--SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG-----NINAARRVFNLIHWRQETVSWTSMIVAL 489 (785)
Q Consensus 418 ll~a-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-----~~~~A~~~~~~~~~~p~~~~~~~li~~~ 489 (785)
+-.. + ...++.++|...+....+.| +......|..+|. .| ++++|.+.|++.. ..+...+..|...|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 2222 1 33566666666666666655 4445555666665 44 7777777777766 54666677766666
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 490 AQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 490 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
.. ..+.++|+..|++..+.|. |+ ....+...|.. ..+.++|..+|+...+ .|.. +....-..+....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~g~~-~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA-QDTP-EANDLATQLEAPL 403 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT-TCCH-HHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-CCCH-HHHHHHHHHHHhC
Confidence 55 3377778877777777552 22 23333334432 4567777777777765 3322 2111111122222
Q ss_pred hcCCHHHHHHHHHh
Q 003937 562 RAGLLQEAYNFIEN 575 (785)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (785)
..++..+|..+.++
T Consensus 404 ~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQ 417 (452)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33455566665554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-11 Score=116.47 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=157.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 522 (785)
+...+..+...|...|++++|.+.|++... +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 455667778888888888888888887642 225677888888888899999999999888874 44 4567788888
Q ss_pred Hhhcc-CCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 523 ACTHG-GLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 523 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
.+... |++++|..+++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 999999999988876 333343 567778888888999999999888877 3344 477888888888999999
Q ss_pred HHHHHHHHHHHhhCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 599 DLGKIAAEKLLLIEP-DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++|...++++++..| +++..+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999888 88888888888889999999999988888653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.6e-11 Score=115.84 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=151.9
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
...|..+...+...|++++|+..|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4567777777888888888888888776642 2 123344556666
Q ss_pred HHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 533 (785)
|.+.|++++|.+.|++... +.+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776531 225667777888888888888888888888774445644 4677777788888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887752 2334667788888889999999999888887 3344 5667888888889999999999999999999
Q ss_pred CCCCchhH
Q 003937 612 EPDNSGAY 619 (785)
Q Consensus 612 ~p~~~~~~ 619 (785)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=121.82 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=142.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 522 (785)
....+..+...+...|++++|...|++.... .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 4455566777788888888888888876432 35677888888888888999999988888874 44 4567777888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888889999999888888762 2345667788888888999999999888877 3334 57788888888889999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999988888999999999999999999999888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-11 Score=113.32 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=130.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456677788888888888888888888877 45654 47777777888888888888888777652 23335566667
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888888776 3344 467788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003937 635 AANIRKSMKYV 645 (785)
Q Consensus 635 a~~~~~~m~~~ 645 (785)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=111.33 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=151.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
+...|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 44566677777777777777777777766532 22 2334455666
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQH-GLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
.|...|++++|.+.|++... +.+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 67777777777777776532 22566778888888888 8888888888888874344543 46777778888888888
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP--DVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
+|...++++.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888887752 2234667788888888999999999888877 2233 5667777777788999999999999999
Q ss_pred HhhCCCCchhHHHH
Q 003937 609 LLIEPDNSGAYSAL 622 (785)
Q Consensus 609 ~~~~p~~~~~~~~l 622 (785)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999877655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-11 Score=124.22 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLAS-LDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
..|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...+..+++.. +.+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555566666666666665553 333 2334444445555554 666666666555543 234566677777
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc-cCCHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTH-GGLVE 531 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 531 (785)
.|.+.|++++|...|+++.. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 78888888888888887642 22677888888888889999999999999988 5665 4578888888877 56656
Q ss_pred HH-----HHHHHHhhhcCCCCCC-chhHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 003937 532 QG-----QRYYNMMKNVHKIKPT-PSHFASMVDLLGRAG--LLQEAYNFIENMPLEPD-VVAWGSLLSACRVHK------ 596 (785)
Q Consensus 532 ~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 596 (785)
+| ...+++..+ +.|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777765 3444 667888888888888 58889888887755564 667788888887763
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHh
Q 003937 597 --N-LDLGKIAAEKL-LLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 597 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 628 (785)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999888888877776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=119.10 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=141.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
....|..+...+.+.|++++|+..|+++.+. .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445666666677777777777777776652 22 22344455666
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.|.+.|++++|...|++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 67777777777777776532 2256677778888888888888888888887742 23455777777788888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887652 2335667788888888999999998888877 2334 5778899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 003937 612 EPDNSGAYSALCNLYSS 628 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~ 628 (785)
.|+++..+..+..+...
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99888877766555433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-11 Score=127.02 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC----CC----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR----QE----TVSWTSMIVALAQHGL--------------------GEEAI 499 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~----~~~~~~li~~~~~~g~--------------------~~~A~ 499 (785)
.++..+...|...|++++|...|++.... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556666777777777777777654211 12 3366777777777787 78888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHH
Q 003937 500 QLFERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 500 ~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 570 (785)
..+++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777766542 112222 36677777788888888888888777642111122 236777788888888888888
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHH
Q 003937 571 NFIENM----PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 571 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+.+++. +-.++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888775 11112 4567778888889999999999999988864432 457888899999999999999
Q ss_pred HHHHHHHh
Q 003937 637 NIRKSMKY 644 (785)
Q Consensus 637 ~~~~~m~~ 644 (785)
..+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=131.36 Aligned_cols=198 Identities=13% Similarity=0.025 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC-ChhHHHHHHHHHHHcCC-----------------hHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-------RQ-ETVSWTSMIVALAQHGL-----------------GEEAIQL 501 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~li~~~~~~g~-----------------~~~A~~~ 501 (785)
..++..+...|...|++++|...|++... .| ...+|..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556666777777777777777765421 11 23457777777888888 7888887
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHH
Q 003937 502 FERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 502 ~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 572 (785)
+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7776542 112222 36677777888888888888888877642111112 22677788888889999988888
Q ss_pred HHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHHHH
Q 003937 573 IENM-PL---EPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 573 ~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
+++. .. ..+ ..+|..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 8776 11 111 4577788888999999999999999998864422 34788899999999999999999
Q ss_pred HHHHHh
Q 003937 639 RKSMKY 644 (785)
Q Consensus 639 ~~~m~~ 644 (785)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-11 Score=123.21 Aligned_cols=199 Identities=14% Similarity=0.061 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHcCC--------------------hHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIH----WRQE----TVSWTSMIVALAQHGL--------------------GEEA 498 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~--------------------~~~A 498 (785)
..++..+...|...|++++|...|++.. ..++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 3455667777777888888887777642 1122 2367777777888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHH
Q 003937 499 IQLFERMLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 499 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 569 (785)
++.+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776542 11222 236677777888888888888888877642111122 33677788888999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHH
Q 003937 570 YNFIENM----PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 570 ~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 635 (785)
.+.+++. +-.++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776 11122 4567788888999999999999999998864432 34788899999999999999
Q ss_pred HHHHHHHHhC
Q 003937 636 ANIRKSMKYV 645 (785)
Q Consensus 636 ~~~~~~m~~~ 645 (785)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-11 Score=117.23 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=181.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHH
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RD----VVAWTAMLV 385 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 385 (785)
..+.......|...|++++|...|++.....| +...|..+...|.+.|++++|...|+...+ ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34456677889999999999999999776665 566999999999999999999999998765 22 234888899
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
.|...|++++|+..|++..+.. |+ +..++..+...|...|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~--~~----------------------------------~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD--TT----------------------------------RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TT----------------------------------CTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--cc----------------------------------cHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999887732 22 23445678888899999999
Q ss_pred HHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC---HHHHHHHHHH
Q 003937 466 ARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGL---VEQGQRYYNM 539 (785)
Q Consensus 466 A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 539 (785)
|...|++.... | +...|..+...+...+++++|++.|++..+ ..|+ ...+..+..++...|. +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999887532 3 566777777344445699999999999988 4565 4567777777777777 7778888887
Q ss_pred hhhcCCCCCC------chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003937 540 MKNVHKIKPT------PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLL 589 (785)
Q Consensus 540 m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 589 (785)
..+...-.|+ ...|..+...|.+.|++++|.+.+++. .+.|+ ...+..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 7653323344 256778888999999999999999887 45564 44444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-11 Score=114.34 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=111.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVG 386 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 386 (785)
++...+..+...+.+.|++++|...|++.....| +...|..+...+.+.|++++|...|++..+ .+...|..+...
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444555566666666666666666666444443 455555566666666666666665555432 234445555555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 387 YEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
+.+.+. . .++ .....|++++|...+..+++.. +.+...+..+...|...|++++|
T Consensus 83 ~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 554400 0 000 0000155555555555555442 22445556677777888888888
Q ss_pred HHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 467 RRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 467 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
...|++... ..+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..
T Consensus 138 ~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 138 EASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888876521 14677788888888888888888888888887 4554 4567777778888888888888877653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-11 Score=119.56 Aligned_cols=244 Identities=12% Similarity=0.012 Sum_probs=138.8
Q ss_pred hCCChhHHHHHHHHhHHCCCC--C-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 003937 122 EIGRFKNAIRMFVEMVQDQVL--P-TQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMM 198 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 198 (785)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764321 1 34456666677777777777777777777764 4456667777777777777777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh
Q 003937 199 AKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK 278 (785)
Q Consensus 199 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~ 278 (785)
|...|++....+ ..+..+|..+...|.+.|++++|+..|++++.. .|+.
T Consensus 96 A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~ 144 (275)
T 1xnf_A 96 AYEAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPND 144 (275)
T ss_dssp HHHHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCC
Confidence 777776554111 234566777777777777777777777777432 3444
Q ss_pred hhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc-----hHhHHHHH
Q 003937 279 FTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN-----VIAFTTLL 353 (785)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li 353 (785)
......+..+...|+++.|...+....+.. +++... ..++..+...++.++|...+++.....++ ..+|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 444444444455566666666666555543 222222 33556666666666666666665544431 34455555
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 354 DGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
..|.+.|++++|...|+...+.++..|.....++...|++++|++-
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHH
Confidence 5555555555555555554443332233333344444444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=131.27 Aligned_cols=194 Identities=6% Similarity=-0.046 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHhcCCH-HHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNI-NAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL 521 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 521 (785)
.+...+..+...|...|++ ++|.+.|++.. ..| +...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4566777788888888898 99998888763 223 577899999999999999999999999998 568878888888
Q ss_pred HHhhcc---------CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 003937 522 TACTHG---------GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA--------GLLQEAYNFIENM-PLEP--- 580 (785)
Q Consensus 522 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 580 (785)
.++... |++++|...+++..+. -+.+...|..+..+|.+. |++++|.+.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 899999 9999999999998762 233477888899999888 9999999999988 4456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 581 -DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 581 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+...|..+...+...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999998765443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-11 Score=123.78 Aligned_cols=224 Identities=11% Similarity=0.072 Sum_probs=189.0
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHhccc-CC-ChhHHHHHHHHHH
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN-INAARRVFNLIHW-RQ-ETVSWTSMIVALA 490 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~-~p-~~~~~~~li~~~~ 490 (785)
.|..+...+...|++++|...+..+++.. +.+...++.+...|.+.|+ +++|...|++... .| +...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556667788899999999999999875 4467888999999999997 9999999998742 23 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhh-cCCHH
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGR-AGLLQ 567 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 567 (785)
..|++++|+..|+++++ +.|+. ..|..+..++...|++++|...++++.+ +.| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 56754 5899999999999999999999999986 234 47788999999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--------
Q 003937 568 EA-----YNFIENM-PLEP-DVVAWGSLLSACRVHK--NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG-------- 630 (785)
Q Consensus 568 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 630 (785)
+| ++.+++. .+.| +...|+.+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667666 4566 4778999998888888 689999999998 899999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 003937 631 -KWEDAANIRKSM-KY 644 (785)
Q Consensus 631 -~~~~a~~~~~~m-~~ 644 (785)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 44
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-11 Score=128.15 Aligned_cols=291 Identities=15% Similarity=0.025 Sum_probs=183.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-c----hHhHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----CHh
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYL-N----VIAFTTLLDGYIKIGDIGPARRIFDSLRD-----R----DVV 378 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~----~~~ 378 (785)
...+..+...+.+.|++++|...|++.....| + ..+|..+...|...|++++|...|+.... . ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33445566677777777777777776444333 2 24566677777777777777776665431 1 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPK-PNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
+|..+...|...|++++|+..|++....... ++. .....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHH
Confidence 5556666666667777777666665432100 010 00122344555556
Q ss_pred HhcCC--------------------HHHHHHHHHhcc----cCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003937 458 SKAGN--------------------INAARRVFNLIH----WRQ----ETVSWTSMIVALAQHGLGEEAIQLFERMLELG 509 (785)
Q Consensus 458 ~~~g~--------------------~~~A~~~~~~~~----~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 509 (785)
...|+ +++|...+++.. ..+ ...+|..+...|...|++++|+..|++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666 666666655432 111 13457777778888888888888888776521
Q ss_pred C-CCC----HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC----
Q 003937 510 I-KPD----HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM---- 576 (785)
Q Consensus 510 ~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 576 (785)
. .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 112 126777777888888888888888876542111111 456777888888999999998888776
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCChHH
Q 003937 577 PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 577 ~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 634 (785)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11122 45777888889999999999999999988632 234567778888888877643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-08 Score=109.57 Aligned_cols=443 Identities=11% Similarity=0.050 Sum_probs=224.3
Q ss_pred cchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCC---hhHHHHHH
Q 003937 29 PFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGR---LDLACEVF 102 (785)
Q Consensus 29 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~f 102 (785)
..+-...++..+..+ +.|...|..++..+.+.+.+..++.+|+.+.. .....|...+..-.+.|. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 444555566666665 46889999999999888999999999998763 355678888888888888 89999999
Q ss_pred hhCCC-----CCccHHHHHHHHHHhCCCh--------hHHHHHHHHhHH-CCC-CCCh-hhHHHHHHHHhc---------
Q 003937 103 NLMPN-----RDSVSWTTIIVTYNEIGRF--------KNAIRMFVEMVQ-DQV-LPTQ-FTVTSVLASCTA--------- 157 (785)
Q Consensus 103 ~~m~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~--------- 157 (785)
++... |++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|..-+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 87543 6677788877765554443 233467766543 465 5543 345444443321
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhc
Q 003937 158 LGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQM 237 (785)
Q Consensus 158 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 237 (785)
.++++.++++|..++......-..+|......--..+ ...+.+++.+. ...++.|...+.++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHHHHHH
Confidence 2345667777777764321111222322211111101 11122222111 01222222222211
Q ss_pred ------CCCC---c-ccHHHHHHHHhhCC-CchHHHHHHHHhh---hcCCCCCChhhHHHHHHHHhcccchhhHHHHHHH
Q 003937 238 ------IERD---V-VTWNSMIAGYSQNG-YDFEALGMFANML---KDSSLKPDKFTLASTLSACANLEKLKLGKQIHAY 303 (785)
Q Consensus 238 ------~~~~---~-~~~~~li~~~~~~g-~~~~A~~l~~~ml---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (785)
+.+. . .+.+ +...-..+ .....+.++...+ +..+...+.. ...+....+++.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~------------~~~~Rv~~~Ye~ 334 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD------------LHKARMTYVYMQ 334 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH------------HHHHHHHHHHHH
T ss_pred HHHHHhHhhccccccccch--hccCCCCchhHHHHHHHHHHHHHHHHhCCccccch------------hhHHHHHHHHHH
Confidence 0000 0 0000 00000000 0011112221111 0111000000 001223344444
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChHHHH-HHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 003937 304 IIRTEFDATGPVGNALISCYAKVGGVEIAQ-KIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD------- 374 (785)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 374 (785)
++.. ++....+|-..+..+...|+.++|. ++|++.....| +...|..++...-+.|+++.|+.+|+.+.+
T Consensus 335 aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 335 AAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 4443 2334555555666666666666664 66666433333 445566666666667777777777765542
Q ss_pred ------C------------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHhccCchHHHHHH
Q 003937 375 ------R------------DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE-G-PKPNNYTLSAMLSVSSSLASLDHGKQI 434 (785)
Q Consensus 375 ------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~~~~a~~~ 434 (785)
| ....|-..+....+.|..+.|..+|.+..+. + ..+......+.+... ..++.+.|+.+
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~i 492 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKV 492 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHH
Confidence 1 1124555555555666677777777776654 1 111122222222211 12346666777
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 435 HASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q----ETVSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
|...++. ++.+...+...++.....|+.+.|..+|++.... | ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 493 fe~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 493 LELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665 3445555566666666666677777777665432 2 123566666666666666666666666666
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-11 Score=132.76 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=134.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 355678888888888888888888888887 56764 4777888888888888888888887765 3444 667888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChH
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWE 633 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 633 (785)
+..+|.+.|++++|++.|++. .+.|+ ...|+.+...+...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 45664 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003937 634 DAANIRKSMKY 644 (785)
Q Consensus 634 ~a~~~~~~m~~ 644 (785)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=124.97 Aligned_cols=267 Identities=12% Similarity=0.017 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCc-h----HhHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHH
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLN-V----IAFTTLLDGYIKIGDIGPARRIFDSLRD---------RDVVAWT 381 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~ 381 (785)
+..+...+...|++++|...|++.....|+ . ..|..+...|...|++++|...|++..+ ....+|.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344556677777777777777765443332 2 3566677777777777777776665432 1234555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhc
Q 003937 382 AMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSKA 460 (785)
Q Consensus 382 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~ 460 (785)
.+...|...|++++|+..|++...... +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 666666666666666666666543200 000 011123445555666666
Q ss_pred CC-----------------HHHHHHHHHhcc-------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-
Q 003937 461 GN-----------------INAARRVFNLIH-------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD- 513 (785)
Q Consensus 461 g~-----------------~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 513 (785)
|+ +++|.+.+++.. ..+ ....|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 666666665432 111 234677777888888888888888888765210 011
Q ss_pred ---HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC-
Q 003937 514 ---HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASMVDLLGRAGLLQEAYNFIENM-PL---EPD- 581 (785)
Q Consensus 514 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~- 581 (785)
..++..+...+...|++++|...+++..+...-.. ....+..+...|.+.|++++|.+.+++. .+ .++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 12677777888888999999888887764211111 1456777888899999999999888876 11 112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 582 ---VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 582 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
..++..+...+...|+.++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777888889999999999999999998876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=107.26 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 522 (785)
+..+|..|...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788899999999999999999999864 223 6778999999999999999999999999884 454 456777778
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988762 2344677888999999999999999999887 4456 57789999999999999999
Q ss_pred HHHHHHHHHhhCCCCc
Q 003937 601 GKIAAEKLLLIEPDNS 616 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~ 616 (785)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=118.98 Aligned_cols=263 Identities=15% Similarity=0.046 Sum_probs=141.6
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCC-c----hHhHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHHHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYL-N----VIAFTTLLDGYIKIGDIGPARRIFDSLRD---------RDVVAWTAMLV 385 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~ 385 (785)
...+...|++++|...|++.....| + ...+..+...|...|++++|...|+...+ ....+|..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3445556666666666655433322 1 24455556666666666666666554331 12345666666
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC--
Q 003937 386 GYEQNGLNKDAVELFRSMVREGP-KPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN-- 462 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-- 462 (785)
.|...|++++|+..|++...... .++... ...++..+...|...|+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------------------HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------------------------HHHHHHHHHHHHHHcCccc
Confidence 67777777777777766543210 011000 01122333334444444
Q ss_pred ------------------HHHHHHHHHhcc-------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--
Q 003937 463 ------------------INAARRVFNLIH-------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD-- 513 (785)
Q Consensus 463 ------------------~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-- 513 (785)
+++|.+.+++.. ..+ ....+..+...|...|++++|+..+++..+... .++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 444444443321 010 123455566666666666666666666553210 011
Q ss_pred --HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC
Q 003937 514 --HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-------PLEP 580 (785)
Q Consensus 514 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p 580 (785)
..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++. +..+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 125555666666677777777666665431111111 445666777777777777777777665 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 581 -DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 581 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
...++..+...+...|++++|...+++++++.+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 134677778888889999999999999888765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-09 Score=107.23 Aligned_cols=184 Identities=10% Similarity=0.053 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC-hh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQE-TV-SWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
++|..+++..++.-.+.+...+..++..+.+.|++++|.++|++... .|+ .. .|..+...+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555532233445666666667777777777777766532 232 32 6777777777777777777777777
Q ss_pred HHCCCCCC-HHHHHHHHHHh-hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-C---CC
Q 003937 506 LELGIKPD-HITYVGVLTAC-THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-P---LE 579 (785)
Q Consensus 506 ~~~g~~p~-~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~ 579 (785)
.+. .|+ ...|....... ...|++++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|++. . +.
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 663 232 23333332222 1257777777777766542 1224556666677777777777777777666 1 24
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 580 P--DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 580 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
| ....|..++.....+|+.+.|..+++++++..|++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 4 245666666666677777777777777777777543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-11 Score=122.00 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=113.6
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh------C
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE-------GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS------G 442 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g 442 (785)
+..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888888999999999999999888763 11112233444444555555555555555555443 1
Q ss_pred C-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCH-
Q 003937 443 E-ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL------GIKPDH- 514 (785)
Q Consensus 443 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~- 514 (785)
- +....++..+...|...|++++|.. .|++..+. +-.|+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~--------------------------------~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEP--------------------------------LCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHH--------------------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHH--------------------------------HHHHHHHHHHHhcCCCChHHH
Confidence 1 1123334444444444455554444 44444432 111221
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhhcC-----CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhCC----------C
Q 003937 515 ITYVGVLTACTHGGLVEQGQRYYNMMKNVH-----KIKP-TPSHFASMVDLLGRAGLLQEAYNFIENMP----------L 578 (785)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~ 578 (785)
.++..+...+...|++++|..+++++.+.. +..| ....+..+...|.+.|++++|.+.++++- .
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 234444444445555555555444443310 0011 12234444455555555555555544430 1
Q ss_pred CCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 579 EPDV-------VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 579 ~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.|.. ..+..+...+...+.+.++...++++....|.+..++..++.+|...|++++|.+++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 11112222233444555566666666666676677777888888888888888887777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.3e-10 Score=116.41 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcC-CCCC----HhhHHHHHHHHhccCchHHHHHHHHHHHHhC--CC----CchHHHHH
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREG-PKPN----NYTLSAMLSVSSSLASLDHGKQIHASALRSG--EA----SSLSVSNA 452 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~----~~~~~~~~ 452 (785)
...+...|++++|+..|++....- -.|+ ..++..+...+...|+++.|...+....+.- .. ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556666666666666665421 0122 1233333344444444444444444443320 00 01223444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc----cCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIH----WRQET----VSWTSMIVALAQHGLGEEAIQLFERMLEL----GIKPDH-ITYVG 519 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~----~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ 519 (785)
+...|...|++++|...|++.. ..++. .+|..+...|...|++++|++.|++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 4455555555555555554332 01111 23444555555555555555555554431 111222 24444
Q ss_pred HHHHhhccCCHHHHHHHHHHhh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+..++...|++++|..++++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-10 Score=116.82 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=171.0
Q ss_pred HHHHHhccCchHHHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC-----hhHHH
Q 003937 418 MLSVSSSLASLDHGKQIHASALRS----GEAS-SLSVSNALITMYSKAGNINAARRVFNLIH----WRQE-----TVSWT 483 (785)
Q Consensus 418 ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~-----~~~~~ 483 (785)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++.. ..++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334567889999999999999874 2122 34678889999999999999999998753 1222 34688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhc---CCC-CCCchhHH
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNV---HKI-KPTPSHFA 554 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~ 554 (785)
.+...|...|++++|++.|++..+. +-.+.. .++..+...+...|++++|...+++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999998753 111111 37888899999999999999999987651 122 22356788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PL-----EPD-VVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 11 222 2235666666788888 77777777776 223334567889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-11 Score=119.98 Aligned_cols=241 Identities=11% Similarity=0.100 Sum_probs=150.2
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc------C
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--------R---DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE------G 407 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 407 (785)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999988764 2 2457888899999999999999999998764 2
Q ss_pred CCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhccc----
Q 003937 408 PKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRS------GEAS-SLSVSNALITMYSKAGNINAARRVFNLIHW---- 475 (785)
Q Consensus 408 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 475 (785)
-.| ...++..+...+...|++++|...+..+.+. +..+ ....+..+...|...|++++|.+.|++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233 3456777888899999999999999888764 2112 234455566666666666666666654421
Q ss_pred -----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC
Q 003937 476 -----RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT 549 (785)
Q Consensus 476 -----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 549 (785)
.| ...+|..+...|...|++++|++.|+++.+. .|+.. + ....+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~--------------------------~~~~~~ 236 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-F--------------------------GSVDDE 236 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-H--------------------------C-----
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-C--------------------------CCCCcc
Confidence 11 1234555555556666666666666655542 11000 0 001111
Q ss_pred c-------hhHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 550 P-------SHFASMVDLLGRAGLLQEAYNFIENMP-LEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 550 ~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
. ..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 111222233344445555555555552 234 3567888999999999999999999999988774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-09 Score=108.83 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHH-------hcCCH-------HHHHHHHHhccc--CC-ChhHHHHHHHHHHHc
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYS-------KAGNI-------NAARRVFNLIHW--RQ-ETVSWTSMIVALAQH 492 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~--~p-~~~~~~~li~~~~~~ 492 (785)
.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++... .| +...|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3334444444331 334444555555443 45775 899999998754 35 456899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh-hcCCHHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG-RAGLLQEA 569 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 569 (785)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 677643 7888999999999999999999999862 2234445544443322 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 570 YNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI---EPD-NSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 570 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.++|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 3334 5788999999999999999999999999995 553 56788899999999999999999999987
Q ss_pred hCC
Q 003937 644 YVG 646 (785)
Q Consensus 644 ~~g 646 (785)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=102.03 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
|..+...+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++++.+. .+.+...+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 333344444444444444444444331 22 2234444444444455555555555444431 122344455555556
Q ss_pred hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 561 GRAGLLQEAYNFIENM-PLE-PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
...|++++|.+.++++ ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665554 122 34667777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhC
Q 003937 639 RKSMKYV 645 (785)
Q Consensus 639 ~~~m~~~ 645 (785)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-08 Score=105.14 Aligned_cols=259 Identities=14% Similarity=0.044 Sum_probs=162.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CchHHHHHHHHH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNY----TLSAMLSVSSSLASLDHGKQIHASALRS----GEA-SSLSVSNALITM 456 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~ 456 (785)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+. +.. ........+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 2223333444555555555555554432 110 012234556777
Q ss_pred HHhcCCHHHHHHHHHhccc----C-----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C-C-HHHHHHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW----R-----Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIK--P-D-HITYVGVLT 522 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~----~-----p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~-~~t~~~ll~ 522 (785)
|...|++++|...+++... . | ....+..+...+...|++++|...+++.....-. | . ..++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8888888888888876531 1 1 1234566777888889999999999888763221 1 1 235667777
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA-----SMVDLLGRAGLLQEAYNFIENMP-LEPD-----VVAWGSLLSA 591 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~ 591 (785)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999999888764211111111122 23345778999999999998872 2221 2246677777
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC-----Cc-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPD-----NS-GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~-----~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+...|+.++|...++++....+. +. ..+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999998775332 11 3677788999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-09 Score=102.09 Aligned_cols=204 Identities=10% Similarity=0.070 Sum_probs=132.0
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~ 488 (785)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++... .| +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666667777788888888888777776545556666677777788888888887776542 23 44567777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chhHHHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDH--------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSHFASMV 557 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 557 (785)
|...|++++|+..|++..+ ..|+. ..|..+...+...|++++|...|++..+ +.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 7788888888888887777 34542 2355666667777778888887777764 3444 44556666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PL-EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
..|...|+. .++++ .+ ..+...|..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666554432 22222 01 12333333332 23445678999999999999998887776665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=119.17 Aligned_cols=178 Identities=11% Similarity=0.003 Sum_probs=156.2
Q ss_pred HHHHHHHHHhcccC--CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHH
Q 003937 463 INAARRVFNLIHWR--QETVSWTSMIVALAQHGLG-EEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYN 538 (785)
Q Consensus 463 ~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 538 (785)
++++...++..... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666667655422 2677899999999999999 999999999998 4666 5689999999999999999999999
Q ss_pred HhhhcCCCCCCchhHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 003937 539 MMKNVHKIKPTPSHFASMVDLLGRA---------GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH--------KNLD 599 (785)
Q Consensus 539 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 599 (785)
+..+ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+...+... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 458888899999999999 9999999999987 4456 578899999999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 600 LGKIAAEKLLLIEP---DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 600 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|+..++++++++| +++..|..++.+|...|++++|...+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-08 Score=105.40 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C---CC-chHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVREGP-KPN----NYTLSAMLSVSSSLASLDHGKQIHASALRSG--E---AS-SLSVSN 451 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~---~~-~~~~~~ 451 (785)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445677888888888877764311 122 1233444444555555555555555444321 0 00 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC-HHHHHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELG---IKPD-HITYVG 519 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~t~~~ 519 (785)
.+...|...|++++|.+.|++... .++ ..+++.+...|...|++++|++.|++..+.. -.|+ ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 455555555555555555543321 011 1234445555555555555555555544310 0111 234444
Q ss_pred HHHHhhccCCHHHHHHHHHHhh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+..++.+.|++++|..++++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-09 Score=97.28 Aligned_cols=167 Identities=11% Similarity=-0.023 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTAC 524 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 524 (785)
..+..+...|...|++++|...|+++... .+...|..+...+...|++++|+..++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 44566788899999999999999987533 36778899999999999999999999999884 44 456888888899
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+.++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998762 3445778888999999999999999999887 3334 5778899999999999999999
Q ss_pred HHHHHHHhhCCCCchh
Q 003937 603 IAAEKLLLIEPDNSGA 618 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~ 618 (785)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-09 Score=101.84 Aligned_cols=189 Identities=13% Similarity=-0.004 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIH--WR-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGV 520 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 520 (785)
.++..+..+...|.+.|++++|...|++.. .+ ++...|..+..++...|++++|++.|++..+ ..|+. ..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 345667777778888888888888888653 22 4666777778888888888888888888887 56665 467777
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCC-c-------hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPT-P-------SHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSL 588 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 588 (785)
..++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77888888888888888887752 333 3 34666777777788888888888776 55665 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.. .+...++++..+.+.+...|..+. ....|.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 555543 345556677777665555544333 34556679999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=107.08 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=166.5
Q ss_pred HHHhccCchHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC-----hhHHHHH
Q 003937 420 SVSSSLASLDHGKQIHASALRSG--EA---SSLSVSNALITMYSKAGNINAARRVFNLIH----WRQE-----TVSWTSM 485 (785)
Q Consensus 420 ~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l 485 (785)
..+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++.. ..++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34568899999999999988652 11 124577888999999999999999888653 1122 3468889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC---CCCCCchhHHHHH
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH---KIKPTPSHFASMV 557 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li 557 (785)
...|...|++++|++.|++..+. +-.+. ..++..+..++...|++++|...+++..+.. +.+.....+..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988762 11111 2377888889999999999999999886511 2222366788889
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM----PL--EPD-VVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++.. ..|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHH
Confidence 9999999999999999886 11 233 3345555555667777 777777777632 22334457788999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 003937 628 SCGKWEDAANIRKSMKY 644 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~ 644 (785)
..|++++|...+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-09 Score=102.95 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=155.7
Q ss_pred hccCchHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-------C--C-ChhHHHHH
Q 003937 423 SSLASLDHGKQIHASALRS-------GEASSLSVSNALITMYSKAGNINAARRVFNLIHW-------R--Q-ETVSWTSM 485 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--p-~~~~~~~l 485 (785)
...|+++.|...+...++. ..+....++..+...|...|++++|...|++... . | ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877663 2233467788899999999999999999987631 1 1 34568889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC-----CCCC-Cchh
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL------GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH-----KIKP-TPSH 552 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~ 552 (785)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..++++..+.. .-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11243 3478888889999999999999999887620 1122 2567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM----------PLEPD-VVAWGSLLSACRVHKN------LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 615 (785)
+..+...|.+.|++++|.+++++. ...+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788899999999999999998876 12333 2344444333333332 223333333333334555
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-07 Score=97.66 Aligned_cols=193 Identities=8% Similarity=-0.040 Sum_probs=114.7
Q ss_pred HHHhccCchHHHHHHHHHHHHh----CCC--C-chHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC------ChhHHHHH
Q 003937 420 SVSSSLASLDHGKQIHASALRS----GEA--S-SLSVSNALITMYSKAGNINAARRVFNLIHW-RQ------ETVSWTSM 485 (785)
Q Consensus 420 ~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p------~~~~~~~l 485 (785)
..+...|+++.|...+....+. +.. | ....+..+...|...|++++|...+++... .+ ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 3344445555555544444332 111 1 233445566777777888888777775421 11 12456667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chhHHHH
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDH-ITYV-----GVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSHFASM 556 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 556 (785)
...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|..+++..... ...+. ...+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHH
Confidence 77788888888888888887653212211 1111 2223466788888888888777541 11111 1235567
Q ss_pred HHHHhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 557 VDLLGRAGLLQEAYNFIENM-------PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
...+...|+.++|.+.+++. +..++.. .+..+..++...|+.++|...+++++.+.+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 77888888888888887765 1111222 455566667888999999999888887543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.3e-09 Score=116.69 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 522 (785)
+...++.|...|.+.|++++|.+.|++.. ..| +..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999998764 333 578899999999999999999999999998 67875 58999999
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 599 (785)
++...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999876 3454 678999999999999999999999987 56675 778999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 003937 600 LGKIAAEKLLLIEP 613 (785)
Q Consensus 600 ~a~~~~~~~~~~~p 613 (785)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999988644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-08 Score=97.79 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIH----WRQE----TVSWTSMIVALAQH-GLGEEAIQLFERMLELGIKPD------ 513 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 513 (785)
+++.+...|.+.|++++|...|++.. ...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 33445555555555555555554432 1111 23566666667765 7777777777776652 221
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-----hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 003937 514 -HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-----SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVV--- 583 (785)
Q Consensus 514 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 583 (785)
..++..+...+...|++++|...|++..+...-.+.. ..|..+...+...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356666667777777777777777666421111111 13455666666777777777777666 3444321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCC
Q 003937 584 ---AWGSLLSACR--VHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 584 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.+..++.++. ..+++++|...++++..++|.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2333444443 345566677766666666663
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-07 Score=92.18 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=112.3
Q ss_pred HHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 466 ARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 466 A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|...|++... .++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665432 235555556667777777777777777777664432333 3566666777777777777777777764
Q ss_pred cCCCCC-----CchhHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 003937 543 VHKIKP-----TPSHFASMVDL--LGRAG--LLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLI- 611 (785)
Q Consensus 543 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 611 (785)
..| +..+...|..+ ....| +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 23333444433 22223 777888888777 33355333344444677788888888888877665
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 612 ---------EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 612 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|+|+.+...++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777777777777776 778888888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=100.34 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSS--LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
+|.+++++..+. .++....| .++ .. .+++++|...+..+ ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466667666654 23221112 222 21 22477777777655 4568889999999999986
Q ss_pred ccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhhcc-CCHHHHHHHHH
Q 003937 473 IHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGI---KPD--HITYVGVLTACTHG-GLVEQGQRYYN 538 (785)
Q Consensus 473 ~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~ 538 (785)
... ..+ ..+|+.+...|...|++++|+..|++..+... .+. ..++..+..++... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 531 112 45789999999999999999999999876211 111 24788888899996 99999999999
Q ss_pred HhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHH
Q 003937 539 MMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV--------VAWGSLLSACRVHKNLDLGKIAA 605 (785)
Q Consensus 539 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~ 605 (785)
+..+...-..+ ..++..+...|.+.|++++|.+.+++. ...|+. ..|..+...+...|+++.|...+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88752111111 346788899999999999999999987 233321 15677777888999999999999
Q ss_pred HHHHhhCCCCchh-----HHHHHHHHH--hcCChHHHHHHHHHH
Q 003937 606 EKLLLIEPDNSGA-----YSALCNLYS--SCGKWEDAANIRKSM 642 (785)
Q Consensus 606 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 642 (785)
+++++++|+...+ +..++..|. ..+++++|...++++
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999999975443 344566664 457788888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-09 Score=93.94 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=93.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 566 (785)
+...|+.++|++.+++... ..|+. ..+..+...|...|++++|.+.|++..+ +.| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 3344556666666665544 23333 2455556666666666666666666654 223 355666677777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKI-AAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
++|...|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 4456 46678888888888888876555 4689999999999999888888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=83.89 Aligned_cols=129 Identities=21% Similarity=0.283 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45555666666666666666666665531 122334444444555555555555555544331
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 561 GRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
.+.+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112345566666667777777777777777777777777777777777777777777777777
Q ss_pred HHHh
Q 003937 641 SMKY 644 (785)
Q Consensus 641 ~m~~ 644 (785)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=95.15 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=120.6
Q ss_pred CHHHHHHHHHhcCCC----CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCCCHhhHHHHHHHHhccCchHH
Q 003937 361 DIGPARRIFDSLRDR----DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE------GPKPNNYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~ 430 (785)
.+++|.++++.+..+ ...+|..+...|...|++++|+..|++.... +-.|
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------- 82 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-------------------- 82 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH--------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch--------------------
Confidence 355555555554332 2445666777777777777777777766543 1111
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---------C-ChhHHHHHHHHHHHcCChHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---------Q-ETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
....++..+...|...|++++|.+.|++.... | ...+|..+...|...|++++|+.
T Consensus 83 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 83 --------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp --------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12234455555666666666666666544211 1 23456666777777777777777
Q ss_pred HHHHHHHC------CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcC------CCCCC-chhHHHHHHHHhh----
Q 003937 501 LFERMLEL------GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVH------KIKPT-PSHFASMVDLLGR---- 562 (785)
Q Consensus 501 ~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~---- 562 (785)
.|++..+. +-.|+. .++..+..++...|++++|..++++..+.. ...+. ...+..+...+..
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 77776653 113332 366667777777777777777777665420 11222 2223333333222
Q ss_pred --cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 563 --AGLLQEAYNFIENMP-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 563 --~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...+.++...++... ..|+ ..+|..+...+...|++++|...++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223455555555553 2233 457788888899999999999999998764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-07 Score=87.19 Aligned_cols=174 Identities=9% Similarity=-0.100 Sum_probs=135.4
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHh
Q 003937 465 AARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG----LVEQGQRYYNMM 540 (785)
Q Consensus 465 ~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 540 (785)
+|.+.|++.....++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 455666665555578888888888888888888888888888754 45566666667776 6 788888888887
Q ss_pred hhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003937 541 KNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENM-PLEPD---VVAWGSLLSACRV----HKNLDLGKIAAEKL 608 (785)
Q Consensus 541 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 608 (785)
.+ . -+...+..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...++++
T Consensus 80 ~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 2 355667777777776 78899999999887 33443 6788888888877 78999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 003937 609 LLIEPDNSGAYSALCNLYSSC-G-----KWEDAANIRKSMKYVGV 647 (785)
Q Consensus 609 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 647 (785)
.+. |.++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 55778899999999765 3 89999999999887764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=94.33 Aligned_cols=184 Identities=15% Similarity=0.022 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWR-QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD----HIT 516 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 516 (785)
+...+-.+...+.+.|++++|...|+++... |+ ...|..+..+|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 3445555666777888888888888876432 33 456777777888888888888888888773 342 235
Q ss_pred HHHHHHHhhc--------cCCHHHHHHHHHHhhhcCCCCCC-chhH-----------------HHHHHHHhhcCCHHHHH
Q 003937 517 YVGVLTACTH--------GGLVEQGQRYYNMMKNVHKIKPT-PSHF-----------------ASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 517 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~ 570 (785)
+..+..++.. .|++++|...|+++.+.. |+ .... ..+...|.+.|++++|.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5566666666 788888888888877532 33 2222 45577888999999999
Q ss_pred HHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCh
Q 003937 571 NFIENM-PLEPD----VVAWGSLLSACRVH----------KNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKW 632 (785)
Q Consensus 571 ~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~ 632 (785)
..|++. ...|+ ...+..+..++... |++++|...++++++..|+++. +...+..++...|++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 988887 22343 34666677777655 8889999999999999997754 344445555444444
Q ss_pred HH
Q 003937 633 ED 634 (785)
Q Consensus 633 ~~ 634 (785)
++
T Consensus 249 ~~ 250 (261)
T 3qky_A 249 EG 250 (261)
T ss_dssp HT
T ss_pred hh
Confidence 43
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=91.44 Aligned_cols=189 Identities=10% Similarity=0.052 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD----HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSH 552 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 552 (785)
+...+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+...+...-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 5667777888899999999999999999984 454 457788888999999999999999999874322223 445
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 003937 553 FASMVDLLGR--------AGLLQEAYNFIENM-PLEPD-VVAW-----------------GSLLSACRVHKNLDLGKIAA 605 (785)
Q Consensus 553 ~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~~ 605 (785)
+..+...|.+ .|++++|.+.|++. ...|+ ...+ ..+...+...|+++.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6677888888 99999999999887 23343 2333 44566789999999999999
Q ss_pred HHHHhhCCCCc---hhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCC
Q 003937 606 EKLLLIEPDNS---GAYSALCNLYSSC----------GKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLH 672 (785)
Q Consensus 606 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (785)
+++++..|+++ ..+..++.+|... |++++|...+++..+... .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------CC
Confidence 99999999744 4788899999877 999999999999876422 13
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 003937 673 PQRDAIYNKMAKIWDEIKE 691 (785)
Q Consensus 673 ~~~~~~~~~~~~l~~~~~~ 691 (785)
|...+....+.++...+.+
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-07 Score=89.20 Aligned_cols=182 Identities=12% Similarity=-0.014 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI----TY 517 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 517 (785)
...+..+...+.+.|++++|...|+++.. .|+ ...+..+..+|.+.|++++|+..|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455667778889999999999988753 233 24677788889999999999999999887 355542 33
Q ss_pred HHHHHHhhc------------------cCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 003937 518 VGVLTACTH------------------GGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNFIENMPL 578 (785)
Q Consensus 518 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 578 (785)
..+..++.. .|++++|...|+++.+. .|+. ..+.+... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 334444433 35566666666666542 2332 11111111 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 579 EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567899999999999999999999875 56889999999999999999999999876553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=81.76 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
.+..+...|...|++++|..+|+++.. +.+...|..+...+...|++++|+..|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 467788999999999999999998742 2367789999999999999999999999998853 2345577777778888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888777641 112233344444444444444444444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=95.07 Aligned_cols=161 Identities=8% Similarity=-0.052 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
+...+..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+.. ..|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 455666777778888999999999999888 46654 4777788888899999999999887764 34554433322
Q ss_pred H-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCC
Q 003937 557 V-DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN--SGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 i-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 631 (785)
. ..+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|...++++++.+|++ ...+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2 2356677777788877776 3455 57788999999999999999999999999999987 7899999999999999
Q ss_pred hHHHHHHHHHHH
Q 003937 632 WEDAANIRKSMK 643 (785)
Q Consensus 632 ~~~a~~~~~~m~ 643 (785)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-08 Score=113.27 Aligned_cols=147 Identities=12% Similarity=-0.069 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASM 556 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 556 (785)
...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++...|++++|...|++..+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 34455555555555555555555555555 23332 3455555555555555555555555543 122 24445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555544 2333 344555555555566666666666666666666555555555555544443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-06 Score=86.68 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWRQ---ETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
+...++..+..+ +++......+..+|...|++++|++++.+. ...| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 344444457778888889999999998876 3222 45667778888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hhc--cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-
Q 003937 507 ELGIKP-----DHITYVGVLTA--CTH--GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM- 576 (785)
Q Consensus 507 ~~g~~p-----~~~t~~~ll~a--~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 576 (785)
+ ..| +..+...+..+ ... .+.+.+|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35555555555 222 34889999999998753 344333344555788899999999988765
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 577 PL----------EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 577 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.. .| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 11 25 45566566666566676 8899999999999988754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-05 Score=83.29 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC-THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|...+..+.+.+..+.|..+|++. +. ..++...|......- ...++.+.|..+|+...+..+ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45777777777788899999999998 32 112333443222211 123469999999999887442 23455677888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 559 LLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999983 3577899999888899999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-08 Score=87.54 Aligned_cols=122 Identities=11% Similarity=-0.031 Sum_probs=101.7
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK 596 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 596 (785)
|...+...|++++|+..+..... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456778899999999987754 3343 445667889999999999999999988 5566 5789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI-RKSMKY 644 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 644 (785)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 476654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=104.51 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHH
Q 003937 460 AGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
.|++++|.+.|++.... | +...|..+...|...|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999886432 3 577899999999999999999999999998 4665 46888899999999999999999
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 003937 537 YNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH---KNLDLGKIAAEKLLLI 611 (785)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 611 (785)
+++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998862 2334678889999999999999999999987 4455 477888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 003937 612 EPDNSGAYSALC 623 (785)
Q Consensus 612 ~p~~~~~~~~l~ 623 (785)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888887766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=83.86 Aligned_cols=101 Identities=9% Similarity=-0.070 Sum_probs=89.2
Q ss_pred CCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 545 KIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 545 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 556777888899999999999999888 4556 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+|...|++++|...+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=87.14 Aligned_cols=156 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH-Hh
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL-LG 561 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~ 561 (785)
.+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++...+ ..|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 333444455555555555555444 23332 3444444455555555555555554432 12222211111111 11
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCChHHHHH
Q 003937 562 RAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN--SGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
+.+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111122345555554 3356 47788888889999999999999999999999864 5589999999999999999999
Q ss_pred HHHHHHh
Q 003937 638 IRKSMKY 644 (785)
Q Consensus 638 ~~~~m~~ 644 (785)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.1e-07 Score=85.82 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHhcCCHHHHHHHHHhccc-CC-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 003937 455 TMYSKAGNINAARRVFNLIHW-RQ-ETVSWTS----------------MIVALAQHGLGEEAIQLFERMLELGIKPDH-I 515 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 515 (785)
..+...|++++|...|++... .| +...|.. +...|.+.|++++|+..|++..+ +.|+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
Confidence 345566777777777766532 22 2334444 88889999999999999999998 56754 5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGL--LQEAYNFIENMPLEPDVV--AWGSLLS 590 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~ 590 (785)
.+..+..++...|++++|...|++..+ +.|+ ...+..+...|...|. .+++...++... .|+.. .|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 888888899999999999999999886 3444 6678888888766654 445566666653 44433 4445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
++...|++++|+..+++++++.|+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 677789999999999999999994
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=99.93 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=143.3
Q ss_pred hccCchHHHHHHHHHHHH-------hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcC
Q 003937 423 SSLASLDHGKQIHASALR-------SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHG 493 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g 493 (785)
...+++++|.+.+..+.+ ...+.+...+..+...|.+.|++++|.+.|++... ..+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667777777777777761 12244566778888899999999999999988752 236778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHH
Q 003937 494 LGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYN 571 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 571 (785)
++++|++.|++..+ +.|+. ..+..+..++...|++++ ...|++..+ +.| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 56754 578888889999999999 999998876 234 46788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCch
Q 003937 572 FIENM-PLEPD-VVAWGSLLSACRVHKN-----LDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 572 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 617 (785)
.|++. .+.|+ ...|..+..++...++ .+...++.+.+..+.+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 57786 5577777777655554 34444455555555554444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=78.63 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=65.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+......+.+.|++++|...|++..+. -+.+...|..+...|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555555566666666666666655541 1223445555566666666666666666554 3344 3556667777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
..|++++|+..++++++++|++...+..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-06 Score=87.14 Aligned_cols=221 Identities=12% Similarity=0.043 Sum_probs=155.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5678899999988765321 11 0 11146777777776543 5568889999999998
Q ss_pred HHhccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCCHHHHHHH
Q 003937 470 FNLIHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELG---IKPD--HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 470 ~~~~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
|.+... ..+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 886531 112 3468888899999999999999999876521 1222 2477888888988 999999999
Q ss_pred HHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003937 537 YNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-PL---EPD----VVAWGSLLSACRVHKNLDLGKIA 604 (785)
Q Consensus 537 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 604 (785)
|++..+...-..+ ..++..+...|.+.|++++|.+.|++. .+ .++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987652211111 456788899999999999999999887 11 122 22566666677788999999999
Q ss_pred HHHHHhhCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 003937 605 AEKLLLIEPDNSGA-----YSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 605 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 638 (785)
+++++ +.|....+ ...++..| ..|+.+++..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99865432 34455555 56777666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-07 Score=99.66 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=91.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHH
Q 003937 425 LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLF 502 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~ 502 (785)
.|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.... | +...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777766542 334666777777788888888888888765422 2 4667777777788888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc---CCHHHHHHHHHhC
Q 003937 503 ERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---GLLQEAYNFIENM 576 (785)
Q Consensus 503 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 576 (785)
++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+...|.+. |+.++|.+.+++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777 3454 457777777778888888888888777652 123355677777777777 8888888777766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-07 Score=85.69 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhhccCCHHHHHHHHHHhhhc
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVG----------------VLTACTHGGLVEQGQRYYNMMKNV 543 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 543 (785)
.+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667889999999999999998 577654 5666 788899999999999999998862
Q ss_pred CCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhH
Q 003937 544 HKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN--LDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 544 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
-+.+...+..+...|...|++++|.+.|++. .+.| +..+|..+...+...|+ .+.+...++++....| ....+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 2334778899999999999999999999988 4566 47788888888765543 3455566666554333 22345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 620 SALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 620 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
..++.++...|++++|...+++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66777888899999999999998754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-07 Score=82.15 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=84.3
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455667778888999999999988887 3455 67788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=78.64 Aligned_cols=100 Identities=9% Similarity=0.106 Sum_probs=89.1
Q ss_pred CCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 546 IKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 546 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345677888999999999999999987 4556 578999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 003937 623 CNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 623 ~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-06 Score=84.89 Aligned_cols=164 Identities=10% Similarity=-0.037 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----c
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-----ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----P 550 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 550 (785)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677778888888888888887774322111 12334555667788899999888877642111111 3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------C
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM----PLEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD------N 615 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 615 (785)
..++.+...|...|++++|.+.+++. ...|+ ..+|..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999998888775 11222 257888888999999999999999999886432 1
Q ss_pred chhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003937 616 SGAYSALCNLYSSCGKWEDA-ANIRKSMK 643 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 643 (785)
..+|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 77777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-06 Score=82.41 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=130.0
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCChh----HHHHHH
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEAS--SLSVSNALITMYSKAGNINAARRVFNLIHW-RQETV----SWTSMI 486 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~----~~~~li 486 (785)
.+-.....+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++... .|+.. .|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 44455667888999999999999999874322 245677889999999999999999998742 34322 455555
Q ss_pred HHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCC
Q 003937 487 VALAQ------------------HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK 547 (785)
Q Consensus 487 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 547 (785)
.++.. .|+.++|+..|++..+ ..|+.. ....... ...+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH-----
Confidence 55544 5789999999999998 467764 2222111 0011111111
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
..-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|...++++....|++..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1234667889999999999999887 334442 46888888999999999999999999998886543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-05 Score=85.23 Aligned_cols=169 Identities=13% Similarity=-0.005 Sum_probs=108.2
Q ss_pred HHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 464 NAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 464 ~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+.+..+|++... +.+...|-..+.-+.+.|+.++|..+|++.... |+...+......+...+ +. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---HHHHH
Confidence 345667776542 235677888888888899999999999999985 65543222111111111 11 22222
Q ss_pred hcC---C-----C---CCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 003937 542 NVH---K-----I---KPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP--DVVAWGSLLSA-CRVHKNLDLGKIAAEK 607 (785)
Q Consensus 542 ~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~g~~~~a~~~~~~ 607 (785)
+.. . . ......|...++.+.+.|.++.|.++|++.. .| +...|-..... +...++.+.|..+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 111 0 0 0112456667777777888999999998883 33 23344322222 2233468999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 608 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+++..|+++..+...++...+.|+.+.|..++++.
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988877777777788888899999999988886
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-05 Score=80.31 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=114.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHH
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELG-IKPDHI----TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFAS 555 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 555 (785)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++..+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888877632 122211 2334555667777888888888887752222222 225788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 003937 556 MVDLLGRAGLLQEAYNFIENMP-------L-EPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYS 620 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 620 (785)
+...|...|++++|.+.++++- . .|. ..+|..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888877761 1 122 3378888889999999999999999999865432 56899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 003937 621 ALCNLYSSCGK-WEDAANIRKSMK 643 (785)
Q Consensus 621 ~l~~~~~~~g~-~~~a~~~~~~m~ 643 (785)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-06 Score=81.02 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=97.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776542 456667777777777777777777777766 2334 56788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNS----------------GAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|++++|...++++++..|++. ..+..++.+|...|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 889999999999999999999999987653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.7e-06 Score=77.08 Aligned_cols=173 Identities=10% Similarity=-0.074 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHG----LGEEAIQLFERML 506 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 506 (785)
|.+.+....+.| +...+..|..+|...+++++|.+.|++.....+...+..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344445555443 5556677778888888999999999887666678888888888877 6 8899999999987
Q ss_pred HCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCC---chhHHHHHHHHhh----cCCHHHHHHHHHh
Q 003937 507 ELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPT---PSHFASMVDLLGR----AGLLQEAYNFIEN 575 (785)
Q Consensus 507 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 575 (785)
+.| +...+..+...+.. .+++++|..+|++..+ . .|. +..+..|..+|.. .++.++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566677777776 7889999999988875 2 332 6677788888887 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 003937 576 M-PLEPDVVAWGSLLSACRVH-K-----NLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 576 ~-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 613 (785)
. ...++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334566777777776543 3 89999999999988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=7e-07 Score=89.36 Aligned_cols=191 Identities=8% Similarity=-0.044 Sum_probs=132.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 522 (785)
+...+..+...|.+.|++++|...|++.. ..| +...|..+...|...|++++|+..+++..+ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556677788888999999999998764 233 677888899999999999999999999887 46654 57888888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLG 601 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 601 (785)
++...|++++|...|+...+. .|+. ..+...+....+.+....... .......++......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999999887652 2221 111112222222221112112 2222333344443333 3333 6889999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSC-GKWEDAANIRKSMKY 644 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 644 (785)
...++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998877777777777776 789999999998864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=79.95 Aligned_cols=155 Identities=9% Similarity=-0.049 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA-CTHG 527 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~ 527 (785)
..+...+.+.|++++|...|++.... .+...|..+...|...|++++|+..|++... ..|+...+...... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhh
Confidence 45566788889999999999886522 3677888888999999999999999988876 34544322222111 1122
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 003937 528 GLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 528 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~ 602 (785)
+...+|...+++..+ ..| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222346777777765 345 4677888889999999999999999887 45554 557888888999999999999
Q ss_pred HHHHHHHh
Q 003937 603 IAAEKLLL 610 (785)
Q Consensus 603 ~~~~~~~~ 610 (785)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=75.44 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=83.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444556677788889999999988887 3455 57788889899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-05 Score=76.74 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=106.9
Q ss_pred CHHHHHHHHHhccc-CC-ChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHH
Q 003937 462 NINAARRVFNLIHW-RQ-ETVSWTSMIVAL----AQH---GLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVE 531 (785)
Q Consensus 462 ~~~~A~~~~~~~~~-~p-~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 531 (785)
+++++++.++.+.. .| +...|+.--..+ ... +++++++++++++.+ ..| |..+|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccC
Confidence 56666666655431 11 344455433333 333 566677777777766 334 3345555555555566665
Q ss_pred --HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HH
Q 003937 532 --QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL------LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL-DL 600 (785)
Q Consensus 532 --~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~ 600 (785)
++.++++.+.+. -.-|...|+.-..++.+.|. ++++++.++++ ...| |...|+-+...+.+.|+. +.
T Consensus 162 ~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666642 12334445444444555554 67777777665 3344 567777777777666663 34
Q ss_pred HHHHHHHHHhhC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIE---PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...+++++.+++ |.++.+...++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556667666655 66777777888888888888888888887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-06 Score=71.69 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=72.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|..+++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555554431 1223444555556666666666666666555 2223 5667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
..|+++.|...++++++..|+++..+..+..++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8899999999999999989988888888877776544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-06 Score=75.55 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=82.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33344444455555555555544431 1123444555555666666666666666554 2233 466788888888999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHH--HHHHHhcCChHHHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSAL--CNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|++++|...+++++++.|++...+..+ +..+...|++++|...+....
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999888777444 444888899999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-06 Score=81.84 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW-RQETVSWTSM-IVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACT 525 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 525 (785)
.+..|...|.+.|++++|...|+++.. .|+...+... ...+...++.++|+..|++..+ ..|+. ..+..+..++.
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 334445555555555555555555432 2332222111 1123444445555555555554 23332 34444445555
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
..|++++|...+..+.+...-..+...+..++..|...|+.++|...+
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 555555555555554431111111233444444444444444444333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-06 Score=77.50 Aligned_cols=144 Identities=6% Similarity=-0.076 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccC
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGG 528 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 528 (785)
+..+...|...|++++|...|++.. .|+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 3455666677777777777777765 336677777777777777777777777777763 343 346666666777777
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
++++|...|+...+.. |+..... +...| +...|+ ...|..+...+...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~~---~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL---RGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTT---TTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC---CCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777666421 2111000 00000 012343 46788888889999999999999999
Q ss_pred HHhhCCCC
Q 003937 608 LLLIEPDN 615 (785)
Q Consensus 608 ~~~~~p~~ 615 (785)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 99999964
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=87.75 Aligned_cols=196 Identities=9% Similarity=-0.025 Sum_probs=146.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003937 425 LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFER 504 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 504 (785)
.|++++|.+++....+..-. . .+...|++++|...|.+. ...|...|++++|+..|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHH
Confidence 56778888888877764211 1 111157888888877654 4567889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC---CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 505 MLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH---KIKP-TPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 505 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
..+. |-.+. ..+|..+...|...|++++|...|++..+.. |-.+ ...++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 21111 2378888889999999999999998876421 1111 14567788889988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 576 M-PLEP---D----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS------GAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 576 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
. .+.| + ..++..+...+...|++++|+..+++++++.|++. .++..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788888899999999999999999999866443 2677778888899999999999998
Q ss_pred HH
Q 003937 642 MK 643 (785)
Q Consensus 642 m~ 643 (785)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=87.65 Aligned_cols=144 Identities=10% Similarity=0.071 Sum_probs=106.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+.+.++-. -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 455677777777777888888888877776 34433110 0011111100 0134567778
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777 3455 5778899999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 003937 636 -ANIRKSMK 643 (785)
Q Consensus 636 -~~~~~~m~ 643 (785)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-06 Score=71.69 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=67.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333334444444444444444443321 1112334444444555555555555555444 1223 45677777788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.|++++|...++++++.+|.+...+..+..++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999998888888888888888877664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.3e-06 Score=71.38 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=77.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444555555555555555554431 1223444555556666666666666666554 2233 4667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 632 (785)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888999988888875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.7e-05 Score=74.93 Aligned_cols=159 Identities=9% Similarity=-0.073 Sum_probs=119.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC----CCh---h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIHWR----QET---V-SWTSMIVALAQHGLGEEAIQLFERMLELGIK-PDH----ITYVG 519 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~~----p~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 519 (785)
.+..+...|++++|...+++.... |+. . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999987543 121 1 2334666677778999999999999984322 222 26888
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcC----CCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVH----KIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-------PLEPD-VVAWG 586 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 586 (785)
+..++...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11222 346788999999999999999998876 22222 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhh
Q 003937 587 SLLSACRVHKN-LDLGKIAAEKLLLI 611 (785)
Q Consensus 587 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 611 (785)
.+...+...|+ .++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999994 69999999998764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=72.46 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556677788888888888888776 3345 577888888889999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 003937 629 CGKWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-06 Score=89.57 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|.+.+++..+. -+.+...+..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455667777777777776652 1223566777777788888888888877776 4455 46788899999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNL--YSSCGKWEDAANIRKS 641 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 641 (785)
|+..++++++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999998888888 8899999999998874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00036 Score=69.62 Aligned_cols=224 Identities=10% Similarity=0.084 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchHHHHHHHHHH----Hhc---CCH
Q 003937 394 KDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLA--SLDHGKQIHASALRSGEASSLSVSNALITMY----SKA---GNI 463 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g~~ 463 (785)
++|+.++..++. +.|+..| ++.=-..+...+ .++++...+..++.... -+..+++---..+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 2344333 222223333444 55555555555555432 1222232222222 333 788
Q ss_pred HHHHHHHHhcccC--CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------HHH
Q 003937 464 NAARRVFNLIHWR--QETVSWTSMIVALAQHGLGE--EAIQLFERMLELGIKP-DHITYVGVLTACTHGGL------VEQ 532 (785)
Q Consensus 464 ~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------~~~ 532 (785)
++++++++.+... .+-.+|+--.-.+.+.|+++ ++++.++++.+. .| |...|+.-.....+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8999999887422 37778888877788888888 999999999984 44 44567666666666665 889
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE-AYNFIENM-PL----EPDVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
+.++++.+.. --+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999988876 234567788888888888887544 55577665 22 2367788999999999999999999999
Q ss_pred HHHh-hCCCCchhHHHHHH
Q 003937 607 KLLL-IEPDNSGAYSALCN 624 (785)
Q Consensus 607 ~~~~-~~p~~~~~~~~l~~ 624 (785)
.+.+ .+|.....+...++
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 89977766665443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=75.67 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=67.9
Q ss_pred CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003937 510 IKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAW 585 (785)
Q Consensus 510 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 585 (785)
+.|+.. .+..+...+...|++++|...|+...+ +.| +...|..+..+|.+.|++++|.+.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 344432 455555566666666666666666654 223 3555666666677777777777766666 3445 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 778888888888888888888888888743
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-06 Score=80.86 Aligned_cols=182 Identities=10% Similarity=-0.036 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHhccc-CC-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 003937 459 KAGNINAARRVFNLIHW-RQ-ETVSWTSM-------IVALAQHGLGEEAIQLFERMLELGIKPDHI-------------- 515 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~-~p-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 515 (785)
..++...|.+.|.+... .| ....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999988752 23 56788888 4556666666666665555444 444332
Q ss_pred --------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 003937 516 --------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDV----V 583 (785)
Q Consensus 516 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 583 (785)
....+..++...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677889999999999988764 2354335556667889999999999999877434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIE--PD-NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778888999999999999999998643 54 4457788999999999999999999999764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=72.38 Aligned_cols=94 Identities=18% Similarity=0.077 Sum_probs=83.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC 629 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 629 (785)
.+..+...+.+.|++++|...+++. ...| +...|..+...+...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999888 4456 5778888988999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 003937 630 GKWEDAANIRKSMKYV 645 (785)
Q Consensus 630 g~~~~a~~~~~~m~~~ 645 (785)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-06 Score=75.24 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=75.0
Q ss_pred CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 003937 510 IKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWG 586 (785)
Q Consensus 510 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 586 (785)
+.|+.. .+..+...+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.|++. .+.| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345433 5555666667777777777777766541 1234556666777777777777777777766 3345 466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.+..++...|++++|+..+++++++.|+++..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 88888889999999999999999998876654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-06 Score=67.96 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=81.7
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNL 625 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 625 (785)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 2334 5678888888899999999999999999999998 88999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 003937 626 YSSC-GKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 626 ~~~~-g~~~~a~~~~~~m~~~g~ 647 (785)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999876543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-06 Score=77.32 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=83.4
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSA-CRVHKNL--D 599 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 599 (785)
...|++++|...++...+. -+.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666665542 1234556666667777777777777777665 2233 45667777777 6678887 8
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 89999999988888888888888999999999999999888887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-05 Score=77.45 Aligned_cols=163 Identities=7% Similarity=-0.073 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-h------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHWR-QE-T------VSWTSMIVALAQHGLGEEAIQLFERMLELGI---KPD--HI 515 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 515 (785)
.+...+..|...|++++|.+.+++.... +. . ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3345677888999999999998765322 11 1 1234455667788899999999999886321 122 23
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CC------CCC-H
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PL------EPD-V 582 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p~-~ 582 (785)
+++.+...|...|++++|..++++..+.....|+ ...+..+...|.+.|++++|.+.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732112222 257888999999999999999998876 11 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 003937 583 VAWGSLLSACRVHKNLDLG-KIAAEKLLLI 611 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 611 (785)
.+|..+...+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7878888763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.3e-06 Score=74.68 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|++...|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455555566666666666666555 2334 455666666666677777777777777777777666777777777777
Q ss_pred cCChHHHHHHHHHHHh
Q 003937 629 CGKWEDAANIRKSMKY 644 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~ 644 (785)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7777777777766654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=69.09 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777778888888888888888776 3345 477888888889999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.8e-06 Score=70.72 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-------AYSAL 622 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 622 (785)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556778888888999998888876 4556 4778899999999999999999999999999886543 67788
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 003937 623 CNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 623 ~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999998765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=67.03 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=86.3
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999987 3334 57788999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-05 Score=72.70 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCc----hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEP--DNS----GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+..+...+...|++++|...+++++++.+ .++ .++..++.+|...|++++|...+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666667777777777777777765421 121 2356788888888888888888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.9e-05 Score=73.56 Aligned_cols=127 Identities=11% Similarity=-0.078 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----HhHHHHHHHHHHHc
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-D----VVAWTAMLVGYEQN 390 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~----~~~~~~li~~~~~~ 390 (785)
.-.+...+...|++++|.++|+.+....|+......+...+.+.+++++|+..|+..... + ...+..+-.++.+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 345677888999999999999998888775447777788899999999999999876643 2 23667778889999
Q ss_pred CChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 003937 391 GLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSG 442 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 442 (785)
|++++|+..|++.......|.. ......-.++.+.|+.++|..+++.+....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999988743322542 233344455666777777777777766653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=68.64 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667788889999999999999999987 5556 577889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-05 Score=65.82 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455566666667777776666665 2233 456666666677777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 003937 629 CGKWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777777776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=71.15 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.|++. .+.| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4444555666667777777777666541 1224555666666777777777777777665 3344 4566777888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
..|++++|...+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88899999999999988888776654443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=73.91 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=86.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH-HhhcCCH-
Q 003937 490 AQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL-LGRAGLL- 566 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~- 566 (785)
...|++++|+..|++..+. .| +...+..+...+...|++++|...|++..+.. +.+...+..+... |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3456677777777777663 34 34566777777777777888777777776521 2245566666666 6677887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 567 -QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 567 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888887776 3345 466788888888999999999999999999999775433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=73.64 Aligned_cols=153 Identities=15% Similarity=0.025 Sum_probs=94.5
Q ss_pred hcCCHHHHHHHHHhcccCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 459 KAGNINAARRVFNLIHWRQ--ETVSWTSMIVALAQHGLGEEAIQLFERMLE----LGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
..|++++|.+.++.+...| ....++.+...|...|++++|+..+++..+ .|..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777333332222 345667777777777777777777777654 1222222 35666666777778888
Q ss_pred HHHHHHHHhhhcCCCCC-C----chhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 003937 532 QGQRYYNMMKNVHKIKP-T----PSHFASMVDLLGRAGLLQEAYNFIENM----PLEPD----VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 598 (785)
+|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 87777776654211112 1 334666777778888888887777665 11112 23456777778888999
Q ss_pred HHHHHHHHHHHhh
Q 003937 599 DLGKIAAEKLLLI 611 (785)
Q Consensus 599 ~~a~~~~~~~~~~ 611 (785)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-05 Score=68.45 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=61.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555666666666666666655 34454 4556666666666677777777777777777766666667777
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.4e-05 Score=73.38 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=104.4
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.....|++++|.+.|+..... .....|..+...+...|++++|+..|++..+ +.|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHH
Confidence 344456666666666543211 1345677777888888888888888888887 33432211000 00000
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
. ..+ ....+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++
T Consensus 83 ~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 000 1245666777788888888888888776 3344 5678888889999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 003937 612 EPDNSGAYSALCNLYSSCGKWEDAA-NIRKSMKYV 645 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 645 (785)
+|++...+..+..++...|+.+++. ..+..|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988888877 555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-05 Score=63.78 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444444555555544444331 1123444445555555556666665555554 2233 45667777777888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.|++++|...++++++..|+++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888888777666665554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=85.65 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 456 MYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
.|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|++.+++..+ +.|+ ..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4556667777777666543 122 455666666667777777777777776666 3443 3456666666666666666
Q ss_pred HHHHHHHhhhcCCCCCC-chhHHHHHHH--HhhcCCHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPT-PSHFASMVDL--LGRAGLLQEAYNFIE 574 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 574 (785)
|.+.+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 222 2333333333 555566666666655
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=66.57 Aligned_cols=107 Identities=9% Similarity=-0.076 Sum_probs=62.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+......+...|++++|...|++..+. -+.+...|..+...|.+.|++++|.+.+++. .+.| +...|..+...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444555555555555544431 1122444555555555666666666555554 2344 35677777777888
Q ss_pred cCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 003937 595 HKNLDLGKIAAEKLLLIE------PDNSGAYSALCNL 625 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 625 (785)
.|++++|...++++++++ |.+......+..+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 888888888888888887 7666555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.1e-05 Score=70.04 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...|++..+. .+.+...|..+...|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455555556666666666666655541 1223555666666677777777777776665 3345 4778888888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALC 623 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 623 (785)
..|++++|...++++++++|++...+....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999998887554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.6e-05 Score=67.67 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 34555666666677777777777766663 33 3445666666666777777777777666542 1233556666667
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSL--LSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.|.+.|++++|.+.+++. ...| +...+..+ ...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777777665 2233 33444333 3335666777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-05 Score=65.24 Aligned_cols=77 Identities=17% Similarity=0.036 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 34444555555555666665555544 2234 45677777888888899999999999999999987777666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-05 Score=68.80 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLI-------EPDNSGAY----SALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888999999999999999999999 99999999 9999999999999999999999864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=3.2e-05 Score=66.32 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=86.5
Q ss_pred CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 549 TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3556777888999999999999999987 3344 5778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.6e-05 Score=68.14 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999988653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.7e-05 Score=66.02 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLY 626 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 626 (785)
.+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455667777888887777766 223332 366677777888888888888888888888877 66688888888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|...++...+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.90 E-value=5.3e-05 Score=77.75 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQE----------------TVSWTSMIVALAQHGLGEEAIQLFERMLEL 508 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 508 (785)
+...+..+...|.+.|++++|...|++.. ..|+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45677888999999999999999998764 2233 35677777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHH
Q 003937 509 GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 509 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 569 (785)
+.|+ ...+..+..++...|++++|...|++..+ +.| +...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34666666666666666666666666654 122 233444444444444444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=68.22 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 003937 563 AGLLQEAYNFIENM-PL---EPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777666 33 243 45677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 003937 638 IRKSMKYV 645 (785)
Q Consensus 638 ~~~~m~~~ 645 (785)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.4e-05 Score=65.81 Aligned_cols=98 Identities=8% Similarity=-0.095 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003937 515 ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 592 (785)
..+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444445555555555555555554431 1122444555555555666666666555554 2234 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
...|+++.|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 7888888888888888887775
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.6e-05 Score=62.70 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=58.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP---DVVAWGSLLSA 591 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 591 (785)
.+..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444444555555555555555555431 1223444555556666666666666666555 2233 35667777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 003937 592 CRVH-KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 592 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+... |+.++|...+++++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888887777543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0012 Score=66.60 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=105.2
Q ss_pred CHHHHHHHHHhcccC--CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHH-----
Q 003937 462 NINAARRVFNLIHWR--QETVSWTSMIVALAQH-G-LGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVE----- 531 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~----- 531 (785)
.++++++.++.+... .+..+|+.-...+... + ++++++++++++.+ ..| |..+|..-.....+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchh
Confidence 366666666655322 2455566655555554 5 66777777777766 334 3345544444444444443
Q ss_pred ---HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-
Q 003937 532 ---QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL-------LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL- 598 (785)
Q Consensus 532 ---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~- 598 (785)
++.++++++.+. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 182 QWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 677777766652 23345556666666666665 67777777665 3445 577787776666665543
Q ss_pred -------------------HHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 599 -------------------DLGKIAAEKLLLIE------PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 599 -------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..-......+.... +.++-+...|+++|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 34666788899999999999999999999864
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=8.4e-05 Score=79.87 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=102.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
....|..+...|.+.|++++|+..|++.++ +.|+...+ . .+...+. .. -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~~-~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKAS-ES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHHH-HH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHHH-HH--------HHHHHHHHHH
Confidence 345677778888888888888888888876 33432110 0 0111100 00 0134567778
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
.+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 3445 5778899999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHH
Q 003937 636 AN-IRKSMK 643 (785)
Q Consensus 636 ~~-~~~~m~ 643 (785)
.+ .++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 75 455554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.9e-05 Score=64.66 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN-------SGAYSA 621 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 621 (785)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777788888888888888776 2234 56778888888999999999999999999987765 778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=7e-05 Score=74.67 Aligned_cols=106 Identities=8% Similarity=-0.083 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003937 513 DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLS 590 (785)
Q Consensus 513 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 590 (785)
+...+..+...+...|++++|...|++..+. .+.+...|..+...|.+.|++++|.+.+++. .+.|+ ...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456666777777888888888888777652 1224666777777778888888888877775 45553 567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 777888888888888888877776544433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.8e-05 Score=64.79 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMV 557 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 557 (785)
..|..+...+.+.|++++|++.|++.++ +.|+. .+|..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4566677777777777777777777776 45543 46666677777777777777777666541 111 1111111
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
..+|..+...+...|++++|+..++++++..| ++.
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~ 117 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPE 117 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHH
Confidence 12455566667777788888888888777776 443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-05 Score=72.11 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-D----------------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+..+...+.+.|++++|.+.|++. ...| + ...|..+...+...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445555666666666666666655 1122 1 26788888889999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 614 DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 614 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+++.++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0035 Score=62.91 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=53.0
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHhhHHH----HHHHHhccC-------chHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 388 EQNGLNK-DAVELFRSMVREGPKPNNYTLSA----MLSVSSSLA-------SLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 388 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
.+.|.++ +|+.++..++. +.|+..|.-. ++....... .++.+..++..++... +-+..+|+--.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445444 67777777765 3555544211 111111100 1334444444444332 223334433333
Q ss_pred HHHhcC--CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 003937 456 MYSKAG--NINAARRVFNLIHWR--QETVSWTSMIVALAQHGL-GEEAIQLFERMLE 507 (785)
Q Consensus 456 ~y~~~g--~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 507 (785)
.+.+.| .++++..+++.+... .|..+|+--.-.+...|. .+++++.++++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 344444 255555555554311 144555555444555555 3556666666655
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00024 Score=75.76 Aligned_cols=189 Identities=9% Similarity=-0.083 Sum_probs=131.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-C---Ch---------------hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 003937 455 TMYSKAGNINAARRVFNLIHWR-Q---ET---------------VSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDH 514 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~-p---~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 514 (785)
..+.+.|++++|.+.|..+... | +. .++..+...|...|++++|.+.+.++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456678888888887765321 1 10 13677888899999999999988887652 111222
Q ss_pred H----HHHHHHHHhhccCCHHHHHHHHHHhhhc---CCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-----C--CC
Q 003937 515 I----TYVGVLTACTHGGLVEQGQRYYNMMKNV---HKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-----P--LE 579 (785)
Q Consensus 515 ~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~ 579 (785)
. +.+.+-..+...|.++++..++...... .+..+. ...+..+...|...|++++|.+++++. + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 2333344556678899998888776431 122222 456778889999999999999988876 1 12
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 580 PD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE---PDN----SGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 580 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|. ..+|..++..|...|++++|...++++.... |.+ ...+..++..+...|++++|...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 32 4477888888999999999999999988753 222 2456777888899999999998887764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=6e-05 Score=64.59 Aligned_cols=114 Identities=8% Similarity=-0.036 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL 559 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (785)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555555666666666666666655531 1223344445555555555555555555443310 00
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 560 LGRAGLLQEAYNFIENMPLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
..++ ..+|..+...+...|+++.|...++++++..| ++.....+..+.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 0112 44566677777778888888888888888777 555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00014 Score=64.95 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIK-PDH----ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFAS 555 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 555 (785)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 78 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------ 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 4566666666777777777777666542100 111 13444444444555555555544443320
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHh
Q 003937 556 MVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSS 628 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~ 628 (785)
....+..+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|..
T Consensus 79 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 79 -----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 00001001 133556666667778888888888887776421 123467788888999
Q ss_pred cCChHHHHHHHHHHHh
Q 003937 629 CGKWEDAANIRKSMKY 644 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~ 644 (785)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0097 Score=59.99 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=135.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-CHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLA-SLDHGKQIHASALRSGEASSLSVSNALITMYSKA-G-NINAA 466 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A 466 (785)
+..++|++++.+++.. .|+..| ++.--..+...+ .++++...+..++... +-+..+++--...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444566666665552 343333 222222333344 3555666665555443 23344444444444444 5 67888
Q ss_pred HHHHHhcccC--CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------
Q 003937 467 RRVFNLIHWR--QETVSWTSMIVALAQHGLGE--------EAIQLFERMLELGIKP-DHITYVGVLTACTHGGL------ 529 (785)
Q Consensus 467 ~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 529 (785)
+++++.+... .|..+|+--.-.+.+.|..+ ++++.++++.+. .| |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 8888877533 25667776555555555555 889999999884 44 45577777777777665
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------CC
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL--------------------QEAYNFIENM-PL-------EP 580 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p 580 (785)
++++.++++++.. --+-|...|+.+-..+.+.|+. .+..++..++ .. .+
T Consensus 223 ~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 6788888887765 2234566677777777666653 3444555554 11 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHHH
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLL-LIEPDNSGAYSALC 623 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 623 (785)
....+..|...|...|+.++|.++++.+. +.+|-....+.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 67788889999999999999999999996 57886555544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=8.2e-05 Score=63.15 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=52.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
+...+...|++++|...|+...+. -+.+...+..+..++.+.|++++|+..+++. .+.| +...|..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555431 1123444555555566666666666666555 3344 35566777777777777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 003937 598 LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~ 615 (785)
.++|...++++++++|++
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777888888777777754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00031 Score=60.02 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=57.9
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCC-c---hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPT-P---SHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSAC 592 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 592 (785)
..+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555554431 122 1 24445555566666666666666554 22232 44566677777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
...|+.++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888888888888888888888766544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=6.7e-05 Score=65.87 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-------------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
..|......+.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3455566667777788888888877777 45541 1444444444444444444444443332
Q ss_pred CCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 547 KPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAW----GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+|++. .+.|+ ...| .....++...|++++|+..|+++++++|+|.+.+
T Consensus 86 -------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 -------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp -------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred -------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 11111 34786 5588 8999999999999999999999999999877653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=75.69 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMV 557 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 557 (785)
...|..+...+.+.|++++|++.|++.++. .|+.. .....++ .. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HH---HHHHHHHHHHHHHH
Confidence 345777788888888888888888887761 11110 0001111 11 0112 355677888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998887 5666 4778889999999999999999999999999999999999999999999888887
Q ss_pred HH
Q 003937 636 AN 637 (785)
Q Consensus 636 ~~ 637 (785)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0012 Score=72.56 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=135.9
Q ss_pred cCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 003937 460 AGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGL----------GEEAIQLFERMLELGIKPDH-ITYVGVLTACTH 526 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 526 (785)
...-++|.+.++.+. ..| +...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 344567788888764 233 45668877777766666 8999999999998 56654 578887778888
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 003937 527 GG--LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG-LLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH------ 595 (785)
Q Consensus 527 ~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 595 (785)
.| +++++.+.++++.+. -+-+...|+.-..++.+.| ..+++++.++++ ...| |...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 88 779999999999872 2345667777777888888 899999999988 5566 678898887776652
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 596 --------KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 596 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
+.++++.+.+++++.++|+|..+|.-+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0053 Score=61.56 Aligned_cols=210 Identities=12% Similarity=0.073 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhccc--CCChhHHHHHHHHHHHcCC--h
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYSKAGN----------INAARRVFNLIHW--RQETVSWTSMIVALAQHGL--G 495 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~--~ 495 (785)
+|......++..+ +-+..+++.--..+...|. ++++..+++.+.. +.+..+|+--.-.+...|+ +
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 5666666666543 1223333332222222222 5778888877642 2377889888777777774 8
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC-HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc----------
Q 003937 496 EEAIQLFERMLELGIKP-DHITYVGVLTACTHGGL-VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---------- 563 (785)
Q Consensus 496 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------- 563 (785)
++++..++++.+. .| |...|+.-..++...|. ++++.++++.+.+. -+-|...|+....++.+.
T Consensus 127 ~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 127 ARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 9999999999984 45 45577776667777787 68999999998862 244566677666666554
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHH-
Q 003937 564 ----GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH-----------KNLDLGKIAAEKLLLIEPDNSGAYSALCNL- 625 (785)
Q Consensus 564 ----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 625 (785)
+.++++++++.+. ...| |...|+-+-..+... +.++++++.++++++++|++.-.+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5688899988887 4456 688888776665554 457899999999999999886655554433
Q ss_pred --HHhcCChHHHHHHHHHHHh
Q 003937 626 --YSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 626 --~~~~g~~~~a~~~~~~m~~ 644 (785)
....|..++...++.++.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2346788888888888875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.3e-05 Score=76.31 Aligned_cols=146 Identities=14% Similarity=-0.001 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL 559 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (785)
..|..+...+.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3456666777778888888888888776 4565442 223344444333221 1256677778
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCChHHHH
Q 003937 560 LGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY-SSCGKWEDAA 636 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 636 (785)
|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776 3445 4667888888888888888888888888888888888888777773 4456777777
Q ss_pred HHHHHHHhC
Q 003937 637 NIRKSMKYV 645 (785)
Q Consensus 637 ~~~~~m~~~ 645 (785)
..+++|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.7e-05 Score=64.85 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHhhhcCC--CCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHK--IKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
.|++++|...|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666554 11 1122445566666677777777777777665 3344 3667777777888888888888
Q ss_pred HHHHHHHhhCCCCchh
Q 003937 603 IAAEKLLLIEPDNSGA 618 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~ 618 (785)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.5e-05 Score=77.13 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=90.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 595 (785)
.+..+...+...|++++|...|++..+ +.|+.. .+...|+.+++...+. ...|..+...+...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 455677788899999999999998765 234322 2334455555554442 23788888899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=64.03 Aligned_cols=136 Identities=18% Similarity=0.017 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccC----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWR----QET----VSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD---- 513 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 513 (785)
..++..+...|...|++++|...+++.... ++. .++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456778888999999999999999876421 232 3678888999999999999999999875210 111
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003937 514 HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 592 (785)
..++..+...+...|++++|...+++..+. ..+.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 235556666677777777777777655431 01111001 123455556666
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 003937 593 RVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (785)
...|+.++|...+++++++
T Consensus 140 ~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 6777777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00033 Score=75.04 Aligned_cols=121 Identities=10% Similarity=0.006 Sum_probs=82.5
Q ss_pred hccCCHHHHHHHHHHhhhcC--CCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVH--KIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSL 588 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l 588 (785)
...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455555555554443211 11121 345566666666666666666666554 23455 4578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----hCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 LSACRVHKNLDLGKIAAEKLLL-----IEPDNSGA---YSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|...|++++|+.+++++++ +.|+++.+ ...|..++...|++++|..++.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 46776654 457778888999999999999999864
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=66.21 Aligned_cols=120 Identities=18% Similarity=0.031 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELG------IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 552 (785)
...|......+.+.|++++|+..|++.+..- -.|+...+ ..+ -+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 3456666677777777777777777766520 01111000 000 0112456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS-GAYSALC 623 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 623 (785)
|..+...|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777788888888888888888776 4455 477888899999999999999999999999999877 3333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00031 Score=57.07 Aligned_cols=65 Identities=25% Similarity=0.241 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999999999999999999999999999999999988653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0006 Score=72.67 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=117.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDH----------------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
..+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567889999999999999885322111 136778899999999999999998876533222222
Q ss_pred ----hhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------C
Q 003937 551 ----SHFASMVDLLGRAGLLQEAYNFIENM-------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI------E 612 (785)
Q Consensus 551 ----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 612 (785)
.+.+.+...+...|..++|.+++++. +..+. ..++..|...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334445556778999999888765 22333 457788888899999999999999998763 1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00033 Score=58.59 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 568 EAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 568 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3455 5778888888999999999999999999999999999999999999999999999999998865
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.7e-05 Score=65.72 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=67.6
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 561 GRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN----------LDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
.|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3555677777777666 3455 46677767666666554 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhC
Q 003937 629 CG-----------KWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g-----------~~~~a~~~~~~m~~~ 645 (785)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999999764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=59.68 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 003937 549 TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYS 620 (785)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 620 (785)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445667777888888888888888776 3345 57788888888999999999999999999999987 66777
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~ 639 (785)
.++.++...|++++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7888887777777665443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00054 Score=71.08 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 594 (785)
.+..+...+.+.|++++|...|++..+.. |.. ...-..+++. ...| +...|..+...+.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777777776665410 000 0000111111 1234 35688889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00051 Score=73.72 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999999764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0006 Score=53.85 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=61.6
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566667777777777777777766 2334 46677888888888899999999999999999988888888888876
Q ss_pred hcC
Q 003937 628 SCG 630 (785)
Q Consensus 628 ~~g 630 (785)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.40 E-value=3.3e-06 Score=85.94 Aligned_cols=258 Identities=11% Similarity=0.084 Sum_probs=109.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCC
Q 003937 81 SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGD 160 (785)
Q Consensus 81 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 160 (785)
.|+.|..+..+.+++.+|.+.| +...|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.|+-++++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCc
Confidence 4555555555555555554443 222344445555555555555555555544333321111 222334444444444
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCC
Q 003937 161 LSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER 240 (785)
Q Consensus 161 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 240 (785)
+.+-.++.. .|+..-...+-+-+...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++ ..
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--An 197 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--AN 197 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CC
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 433322221 2333333333444444444444444443333 122233333333433333332221 23
Q ss_pred CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcC-CCCcchHHHH
Q 003937 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEF-DATGPVGNAL 319 (785)
Q Consensus 241 ~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l 319 (785)
++.||-.+-.+|...+.+.-|.-.--..+....--++ ++.-|-..|.+++-..+++.-+ |+ .....+++.|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e------lv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE------LINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG------GGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH------HHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 5556666666666666555443333333222111122 2333455555555544444332 22 2344455556
Q ss_pred HHHHHhcCChHHHHHHHHHhCCC----CC-----chHhHHHHHHHHHhcCCHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGIS----YL-----NVIAFTTLLDGYIKIGDIGPA 365 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~----~~-----~~~~~~~li~~~~~~g~~~~A 365 (785)
.-.|+|- ++++-.+.++..-.+ .. ....|.-++-.|.+-.+++.|
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 5556554 234333333321111 00 333455555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=52.22 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 580 PDVVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
+|+..|..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888888755544 69999999999999999999999999999999999999999999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=70.89 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=86.5
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hhHH
Q 003937 559 LLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GAYS 620 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 620 (785)
.+...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888775 23344 45789999999999999999999999987 356555 4688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
.|+.+|..+|++++|..++++..+.-.. . . ...||...+....+.....++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998642110 0 1 1358888887776666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=69.71 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=85.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hh
Q 003937 557 VDLLGRAGLLQEAYNFIENM------PLEP---D-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GA 618 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 618 (785)
+.-+.+.|++++|++++++. -+.| + ..+++.|...|...|++++|+.+++++++ +.|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677788887777655 1223 2 34788888899999999999999999986 345554 46
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 619 YSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 619 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
+..|+.+|...|++++|..++++..+--. +. -...||...+.+..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999998864211 00 12368999998888888887775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0013 Score=54.23 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 580 PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999999999999999999999999999999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.014 Score=58.67 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHh
Q 003937 478 ETVSWTSMIVALA--QHGL---GEEAIQLFERMLELGIKPDHI-TYVGVLTAC 524 (785)
Q Consensus 478 ~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 524 (785)
+...|...+.+.. ..++ ..+|+.+|++..+ +.|+.. .+..+.-++
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 6677777776643 3333 5789999999998 688753 454444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0061 Score=52.74 Aligned_cols=88 Identities=9% Similarity=-0.080 Sum_probs=48.5
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----c
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS----C 629 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 629 (785)
.+|...+..++|.++|++.--.-+...+..|...|.. .++.++|...++++.+. .++..+..|+.+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333444444444443112234444444444444 55666666666666554 355666777777776 6
Q ss_pred CChHHHHHHHHHHHhCCC
Q 003937 630 GKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 630 g~~~~a~~~~~~m~~~g~ 647 (785)
+++++|.+++++..+.|.
T Consensus 111 ~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 777777777777766554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00044 Score=60.51 Aligned_cols=99 Identities=18% Similarity=0.047 Sum_probs=59.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
.+.+.+++|++.+++..+ +.|+. ..|..+..++...++++.+.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 344556666666666666 34533 45555555555554433111111 01345
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCc
Q 003937 569 AYNFIENM-PLEPD-VVAWGSLLSACRVH-----------KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 569 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 616 (785)
|+..|++. .+.|+ ..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 55555555 44553 45666666666554 589999999999999999664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0066 Score=66.63 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCC----------HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 493 GLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGL----------VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
...++|++.++++.+ +.|+.. .|+.--.++.+.|. ++++.+.++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 678765 56655555666666 89999999999862 2344667777777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------
Q 003937 562 RAG--LLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK-NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC------- 629 (785)
Q Consensus 562 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 629 (785)
+.| ++++|+++++++ ...| +...|+.-.......| ..+++.+.++++++.+|.|..+|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 4455 6889998888888888 899999999999999999999999999988774
Q ss_pred -------CChHHHHHHHHHHHh
Q 003937 630 -------GKWEDAANIRKSMKY 644 (785)
Q Consensus 630 -------g~~~~a~~~~~~m~~ 644 (785)
++++++.+++++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0027 Score=49.90 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5578888888999999999999999999999999999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.024 Score=48.85 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=54.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK----AGNINAAR 467 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 467 (785)
++++|++.|++..+.| .|+.. +-..+.....+++|.+.+....+.| +......|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665554 22222 3333344444555555555555543 33444445555554 45555555
Q ss_pred HHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 003937 468 RVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERMLELG 509 (785)
Q Consensus 468 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 509 (785)
+.|++.....+..++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554433355555555555554 455555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0041 Score=51.72 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=50.4
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
+...|+...+ .-+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444544443 11223455566666666667777776666665 2334 356777777778888888888888888887
Q ss_pred hCCC
Q 003937 611 IEPD 614 (785)
Q Consensus 611 ~~p~ 614 (785)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=67.93 Aligned_cols=82 Identities=10% Similarity=-0.019 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hhHHHHHH
Q 003937 563 AGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GAYSALCN 624 (785)
Q Consensus 563 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 624 (785)
.|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665553 22344 35788888999999999999999999986 355554 46888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0048 Score=49.85 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+...|..+...|...|++++|+..|++..+ ..|+ ...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666666666666666665 3343 23555566666666666666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0042 Score=63.71 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHH
Q 003937 10 ISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAY 89 (785)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 89 (785)
.-|+..|..++.++.+.|.+++....+.-..+. .-++.+-+.|+-+|++.+++.+-.++.. .||+.--..+..-+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 346678888999999999998888877665544 3455677889999999998765443332 35666666677778
Q ss_pred HccCChhHHHHHHhhCCC------------------------CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 003937 90 AKQGRLDLACEVFNLMPN------------------------RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ 145 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 145 (785)
...|.++.|.-+|..+.. .++.+|-.+-.+|...+.+.-|.-.--.+. +.||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH-
Confidence 888888888888877653 356688888888888888877765544444 2222
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC----CC-------CcchH
Q 003937 146 FTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR----LK-------NVSSW 214 (785)
Q Consensus 146 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~-------~~~~~ 214 (785)
....++..|-..|.+++-..+++..+... .....+++-|.-.|+|- +.++-.+-++... -| ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 23345566777788888777777665322 45677888888888886 3444444443322 22 34578
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 003937 215 NVVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l 233 (785)
..++-.|++-..+|.|...
T Consensus 308 ~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHhcchhHHHHHHH
Confidence 8888888888888876543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.01 Score=62.30 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCC
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDN 615 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 615 (785)
.+++.|..+|...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555666666666665555554 23455 45788888889999999999999999877 46776
Q ss_pred chhH
Q 003937 616 SGAY 619 (785)
Q Consensus 616 ~~~~ 619 (785)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.02 Score=60.31 Aligned_cols=70 Identities=13% Similarity=-0.076 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS 616 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 616 (785)
+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4455555555555555555555543 23454 45788888889999999999999998877 477776
Q ss_pred hhHHH
Q 003937 617 GAYSA 621 (785)
Q Consensus 617 ~~~~~ 621 (785)
.+-.+
T Consensus 411 ~~~~~ 415 (429)
T 3qwp_A 411 LIEDL 415 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.03 Score=56.34 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHhhc-----cCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHh----hcC-------CHHHHHHH
Q 003937 510 IKPDHITYVGVLTACTH-----GGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLG----RAG-------LLQEAYNF 572 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 572 (785)
.+.+...|...+.+... .....+|..+|++..+ +.|+ ...|..+..+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566778887776432 2345789999999886 4676 234443333331 111 12233333
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 573 IENMPLE-PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 573 ~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
...+... .++.+|.++...+...|+++.|...++++++++| +...|..++.++.-.|++++|...+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3333333 4677888887777778999999999999999998 67788999999999999999999999887643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0099 Score=47.61 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
..+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444555555555555444 2223 233 44444444555555555555555555555544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.021 Score=45.59 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
...+...|++++|...+++..+. .+.+.. .+..+...|.+.|++++|.+.|++. ...|+ ...|.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 44556667777777777776642 122344 5666667777777777777777665 33443 222211 34
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 003937 598 LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~ 615 (785)
+.++...+++....+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 455666666665555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.44 Score=39.45 Aligned_cols=141 Identities=10% Similarity=0.009 Sum_probs=95.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
+.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+.+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567777777777777652 22233333333333334445555555555432222 34666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
...-+-.++ .+......-+......|.-++-..+...++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 244445666778889999999999999876666668999999999999999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.047 Score=47.10 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIE-P-DNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
++..+...+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777766 5567888888877776 6 3466777777778888888888888887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.39 Score=55.46 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=54.2
Q ss_pred HhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHH
Q 003937 222 IHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301 (785)
Q Consensus 222 ~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (785)
.+.|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+....+-
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 4445555555554443 24567777777777777777777777776 32 333333444445555444443
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
......| -++.-...|.++|++++|.+++.++
T Consensus 731 ~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333332 1233444566667666666655543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.028 Score=54.11 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=70.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHhc-CChHH
Q 003937 566 LQEAYNFIENM-PLEPD---VVAWGSLLSACRV-----HKNLDLGKIAAEKLLLIEPDN-SGAYSALCNLYSSC-GKWED 634 (785)
Q Consensus 566 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 634 (785)
..+|...+++. .+.|+ -..|..|...|.+ -|+.++|++.|++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555 45676 4577888877877 599999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003937 635 AANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 635 a~~~~~~m~~~g~~~~~~ 652 (785)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876664454
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.26 Score=56.97 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3455677777777765553 556777777777777777777777776643 2233333344455444443
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
+-+.... .| .++.-...|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333322 11 1233333444555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.15 Score=41.19 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-----P----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34445555555555555555443 0 123456788888999999999999999999999999887654433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.84 Score=40.40 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.+....+|+++.|.++.+.+. +...|..|......+|+.+-|.+.|.+... |..+.-.|...|+.+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 445567899999999888773 678899999999999999999999887654 34454555666776665
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
..+-+.... .| -++.-...+.-.|+++++.+++.+.+.-|.... ..+.+|-.+.|.++.+.+
T Consensus 80 ~kla~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 554443332 11 144455556678999999999888763332221 124467777777776655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.12 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.024 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 548 PTPSHFASMVDLLGRAGL---LQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
++...+..+..++...++ .++|..++++. ...|+ +..+..+...+.+.|++++|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654443 67888888777 45664 556666777788889999999999999888886
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.19 Score=43.35 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 548 PTPSHFASMVDLLGRAG---LLQEAYNFIENM-PLE-P--DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
++..+.-.+..++.+++ +.+++..++++. ... | +...+-.|.-+|.+.|++++|.+.++++++++|+|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555544 334555554444 112 3 23455567777899999999999999999999976543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=2 Score=38.03 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 003937 454 ITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~ 474 (785)
...+.-.|+++++.++|.+..
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHCC
Confidence 334445566666666665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.32 Score=54.26 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
-|...|+++.|+.+++++...-|.+-.+|..|+.+|.+.|+|+.|.-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678999999999999999999999999999999999999999999999988
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.61 E-value=17 Score=41.43 Aligned_cols=254 Identities=10% Similarity=0.025 Sum_probs=134.4
Q ss_pred HHHhcCChHHHHHHHHHhCCC----CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------HhHHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGIS----YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD-RD----------VVAWTAMLVG 386 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~ 386 (785)
+....|+.++++.++++.... .+.+..-..+.-+....|..+++...+..... .+ +..-.++.-|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888888888775442 22334444555666666666666665554332 22 1122233334
Q ss_pred HHHcCCh-hHHHHHHHHHHHcCCCCCHhh--HHH--HHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH--Hh
Q 003937 387 YEQNGLN-KDAVELFRSMVREGPKPNNYT--LSA--MLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY--SK 459 (785)
Q Consensus 387 ~~~~g~~-~~A~~~~~~m~~~g~~p~~~t--~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~ 459 (785)
.+-.|.. +++.+.+..+.... +... ... +-..+...|+-+....++..+.... +..+...+..++ .-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 4444432 46677777766532 2111 111 1222345567777777777666532 223333333333 36
Q ss_pred cCCHHHHHHHHHhcccCCChhH-HHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 460 AGNINAARRVFNLIHWRQETVS-WTS---MIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~p~~~~-~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
.|+.+.+..+.+.+....|... |.+ +.-+|+..|+.....++++.+... ...+......+.-+....|..+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 6888888888877764434433 432 334567777876666688888763 12222222222224445666666667
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHH
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLL-QEAYNFIENMPLEPDVVA 584 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 584 (785)
+++.+.+ ...|.+..-.++.-+..-.|.. .+|.+.+..+.-.+|..+
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 7765554 2345555444444444444433 567777777744555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.35 E-value=0.85 Score=37.73 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHKNLDL---GKIAAEKLLLIE-P-DNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+..+-..+..++.+..+... ++.+++.+...+ | ........|+-++.+.|++++|.++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555555443 3 2333444555555555666666555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.21 Score=48.20 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhc-----cCCHHHHHHHHHHhhhcCCCCC--CchhHHHHHHHHhhc-
Q 003937 495 GEEAIQLFERMLELGIKPD---HITYVGVLTACTH-----GGLVEQGQRYYNMMKNVHKIKP--TPSHFASMVDLLGRA- 563 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~- 563 (785)
...|...+++.++ +.|+ ...|..+...|.. .|+.++|.+.|++..+ +.| +..++..+.+.|++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 3455566666666 5565 2355555555555 2666666666666554 334 244455555555553
Q ss_pred CCHHHHHHHHHhC
Q 003937 564 GLLQEAYNFIENM 576 (785)
Q Consensus 564 g~~~~A~~~~~~~ 576 (785)
|+.++|.+.+++.
T Consensus 254 gd~~~a~~~L~kA 266 (301)
T 3u64_A 254 NNRAGFDEALDRA 266 (301)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.74 Score=36.92 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE-------PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+..-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678888999999999999999998852 234567899999999999999999999998753
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.03 E-value=7.9 Score=32.62 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 579 EPDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIEPD-NSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355555555555555444 345677777777777664 335566677778888888888888777765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=30 Score=37.74 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHH
Q 003937 493 GLGEEAIQLFERMLELG-IKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (785)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 322222 233333344455535566666665443 123333344455555578999999
Q ss_pred HHHHHhCCCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 570 YNFIENMPLEP-DVVAWG-SLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 570 ~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
...|+.|+-.+ +..-|. =+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999996433 223232 233356678999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.73 E-value=3.3 Score=34.23 Aligned_cols=34 Identities=24% Similarity=0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.-.|.-++.+.|+++.|.+.++.+++.+|+|..+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 3445667889999999999999999999977644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=86.38 E-value=13 Score=30.90 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=22.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+.-
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3334444444444444444222 123344444444444444444444444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.73 E-value=1.8 Score=44.48 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCc
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-----YVGVKKTQG 652 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 652 (785)
...++..+...|+.+++...++.++..+|-+...+..|+.+|.++|+..+|.+.|+... +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34566677888999999999999999999998999999999999999999999988875 458876554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.93 E-value=49 Score=36.10 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCch-hHHHHHHHHHHhcCChhHHHHHhhcCCCC--ChhhHHHHHHHHH
Q 003937 14 EFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSV-FLKNSLMNFYAKTESISYAKKVFDEMPVK--TLCSWNTILSAYA 90 (785)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~ 90 (785)
..|....++. +.|+...+..+-..+. +.+... ..|..|...+ ......+....+..-+.. ....-+..+..+.
T Consensus 8 ~~~~~a~~a~-~~~~~~~~~~l~~~l~--~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 8 SRYAQIKQAW-DNRQMDVVEQMMPGLK--DYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHSGGGT--TSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhhc--CCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3445544443 4577766655544332 111111 1233332222 223556666666665532 1223455667777
Q ss_pred ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 91 KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 91 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
+.+++.....++.. +..+...--....+....|+..+|......+-..|-. ..... ..++..
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c----------------~~l~~~ 145 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------------DKLFSV 145 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------HHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHH----------------HHHHHH
Confidence 88888888887766 4334444444566777788888888877777655521 22223 334444
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 171 VVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
..+.|.-.+..++.. +......|+...|..+...++
T Consensus 146 ~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 146 WRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp HHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhCC
Confidence 444443322233333 355556678888888877774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.71 E-value=32 Score=33.88 Aligned_cols=167 Identities=15% Similarity=0.121 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQL----FERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
|.++..-|.+.+++++|.+++-.-. ..+.++|+...|.++ ++-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3566677888899998888765432 124445554444333 344555677777777666666655
Q ss_pred ccCCHH-HHHHHHHHhhh---cCC--CCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003937 526 HGGLVE-QGQRYYNMMKN---VHK--IKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 526 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 599 (785)
....-+ .=..+.+.+.+ +.| -.-|+.....+...|.+.|++.+|+.-|- .+-++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 443211 11112222211 122 23456666778899999999999998874 3434445677666666554443
Q ss_pred HHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCChHHHHHHHHHHHh
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSA-LCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|.....|.+ .+--|...|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222223322 23346778899999888777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.13 E-value=9.2 Score=32.56 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS 445 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 445 (785)
++.++|.++|+.++..+-+- ...+......-.+.|++..|+++++..+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45555555555554432111 2222222222334455555555555555444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=82.63 E-value=3.7 Score=34.97 Aligned_cols=53 Identities=8% Similarity=-0.100 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
+|.++|..+|+.++.+...=+..+...+.--.++|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777777777776663333445555566667778888888888877765543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.13 E-value=9.1 Score=31.78 Aligned_cols=65 Identities=8% Similarity=-0.072 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIEPD-NSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+..+--.+..++.+.. +..+|+.+++.+...+|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 334566666666666663 244566666667777777777777766654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.99 E-value=5.9 Score=30.93 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
.-+..+-++.+....+-|++....+.|.||-+.+++.-|.++|+.++. ...+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCchhhHHHHHH
Confidence 445666677777778899999999999999999999999999998875 34444556777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 785 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 4e-07
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 7/180 (3%)
Query: 451 NALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL 508
L + +A + A + V ++ + GL + AI + R +E
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE- 265
Query: 509 GIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568
++P L A + + ++ ++ G ++E
Sbjct: 266 -LQPHFPDAYCNL-ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 569 AYNFIEN-MPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626
A + + P+ A +L S + L + ++ + I P + AYS + N
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 26/167 (15%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540
++ ++ L + + + A+ + R L L + + + GL++ Y
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTY--- 260
Query: 541 KNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIEN--MPLEPDVVAWGSLLSACRVHKN 597
+ +++P P + ++ + L G + EA + + +L + R N
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA-ANIRKSMK 643
++ K L + P+ + A+S L ++ GK ++A + +++++
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 785 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.73 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.66 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.27 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.19 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.16 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.95 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.94 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.83 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.84 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.43 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.14 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.66 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-18 Score=182.15 Aligned_cols=371 Identities=14% Similarity=0.106 Sum_probs=261.4
Q ss_pred HHHHHhcCChHHHHHHhhhcCC--C-CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccch
Q 003937 218 VSLHIHSGRLDLARAQFDQMIE--R-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKL 294 (785)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~ 294 (785)
...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------------------------- 59 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA-------------------------- 59 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------
Confidence 3444555555555555555421 1 3444555555555555555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003937 295 KLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLR 373 (785)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 373 (785)
++.. +.+..++..+...|.+.|++++|...+.......+ +...+..........+....+........
T Consensus 60 ----------l~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 60 ----------IKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp ----------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred ----------HHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3332 12233455566666667777777776666444333 33334444444444444444444333222
Q ss_pred ---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHH
Q 003937 374 ---DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVS 450 (785)
Q Consensus 374 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 450 (785)
......+..........+....+...+.+..... +-+...+..+...+...++.+.|...+...++.. +.+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 2344445555566667777777777777766542 2234455666667778888888888888887764 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHG 527 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 527 (785)
..+...|...|++++|...|+.... ..+...|..+...+...|++++|+..|++..+ +.|+. .++..+..++...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 8888999999999999999987642 23667788888999999999999999999988 56764 5888888999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 528 GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAA 605 (785)
Q Consensus 528 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 605 (785)
|++++|.+.++.... ..+.+...+..+...|.+.|++++|.+.+++. .+.|+ ..+|..+...+...|++++|+..+
T Consensus 285 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998876 34556778888999999999999999999886 66775 668888999999999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 606 EKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 606 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
+++++++|+++.+|..|+++|.+.|+
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=8.9e-18 Score=175.86 Aligned_cols=348 Identities=15% Similarity=0.120 Sum_probs=271.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIF 369 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f 369 (785)
.|+++.|.+.+..+++.. +.+..++..+...|.+.|++++|...|++.....| +..+|..+...|.+.|++++|...+
T Consensus 12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence 344444444444444332 22345567778889999999999999999766555 6789999999999999999999999
Q ss_pred HhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 003937 370 DSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS 446 (785)
Q Consensus 370 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 446 (785)
..... .+...+..........+....+............... .............+....+........... +.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 88764 3444555555666666777777776666655443333 333344445556667777777776666654 445
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|+..|++....+ ..+...+..+..++
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence 6677888899999999999999998763 223 56789999999999999999999999998853 33456788888899
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-P-LEPDVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
...|++++|...|++..+. -+.+...+..+...|.+.|++++|.+.++.. . .+.+...+..+...+...|++++|+
T Consensus 248 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence 9999999999999998762 2334678889999999999999999999887 2 2346778899999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 603 IAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..+++++++.|+++.++..++.+|...|++++|...+++..+
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.6e-12 Score=128.32 Aligned_cols=225 Identities=13% Similarity=0.116 Sum_probs=153.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG 461 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 461 (785)
....+.+.|++++|+..|++.++. .|+ ...|..+..++...|+++.|...+..+++.. +.
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---------------- 85 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---------------- 85 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cc----------------
Confidence 455677788888888888887764 343 3334444444444444444444444444332 11
Q ss_pred CHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHhh
Q 003937 462 NINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT----------------YVGVLTACT 525 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~ 525 (785)
+...|..+...|...|++++|++.+++... ..|+... ....+..+.
T Consensus 86 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 86 ----------------NQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHH
T ss_pred ----------------cccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 344455555555555555555555555544 2222110 111112233
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKI 603 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 603 (785)
..+...++...+.+..+...-.++...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|..
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence 445677788888777653333445667888889999999999999999887 4455 47789999999999999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.++++++++|+++.++..++.+|.+.|++++|...+++..+
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.8e-12 Score=128.14 Aligned_cols=264 Identities=15% Similarity=0.062 Sum_probs=161.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChh
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNK 394 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 394 (785)
....|.+.|++++|...|++....+| +..+|..+...|...|++++|...|++..+ .+...|..+...|...|+++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 34457788888888888888666655 577888888888888888888888877653 35677777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+|++.+++.... .|+.............. .
T Consensus 105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~----------------------------- 134 (323)
T d1fcha_ 105 QACEILRDWLRY--TPAYAHLVTPAEEGAGG-------------------A----------------------------- 134 (323)
T ss_dssp HHHHHHHHHHHT--STTTGGGCC---------------------------------------------------------
T ss_pred ccccchhhHHHh--ccchHHHHHhhhhhhhh-------------------c-----------------------------
Confidence 888888887663 33322110000000000 0
Q ss_pred cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH
Q 003937 475 WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF 553 (785)
Q Consensus 475 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 553 (785)
+.......+..+...+...+|.+.|.+..+... .++...+..+...+...|++++|...+++.... .+-+...|
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 209 (323)
T d1fcha_ 135 ---GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 209 (323)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ---ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccch
Confidence 000000011112223334555555555554211 122344555555666666666666666665541 12234556
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----------HH
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA-----------YS 620 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~ 620 (785)
..+...|.+.|++++|.+.+++. .+.| +..+|..+...|...|++++|+..++++++++|++... +.
T Consensus 210 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 289 (323)
T d1fcha_ 210 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 289 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred hhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHH
Confidence 66677777777777777777665 3455 36678888888999999999999999999988876543 34
Q ss_pred HHHHHHHhcCChHHHHH
Q 003937 621 ALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~ 637 (785)
.+..++...|+.+.+..
T Consensus 290 ~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 290 TLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 56666777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.1e-07 Score=94.15 Aligned_cols=226 Identities=13% Similarity=0.003 Sum_probs=146.1
Q ss_pred HHHHhccCchHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cC--CC-hhHHH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSG--EA---SSLSVSNALITMYSKAGNINAARRVFNLIH-------WR--QE-TVSWT 483 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--p~-~~~~~ 483 (785)
...+...|++++|...+..+.+.. .. .....+..+...|...|++..|...+.... .. +. ...+.
T Consensus 58 g~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~ 137 (366)
T d1hz4a_ 58 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHH
Confidence 334444455555555554443321 00 112233455666777888888877776542 11 11 12445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-----chhHH
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKP----DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-----PSHFA 554 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 554 (785)
.+...+...|+++.|...+.+........ ...++......+...+...++...+........-..+ ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 56677888899999998888877642221 2234555556677788888888777665432211111 23355
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEP-----DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI------EPDNSGAYSAL 622 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l 622 (785)
.+...+...|+.++|...+++. ...| ....+..+...+...|++++|...+++++.. .|....++..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 5667788899999999999887 2222 1345666778889999999999999998753 34455688899
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 003937 623 CNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 623 ~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.+|...|++++|.+.+++..+
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.1e-07 Score=94.29 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=142.7
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 003937 427 SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-E-TVSWTSMIVALAQHGLGEEAIQLFE 503 (785)
Q Consensus 427 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~-~~~~~~li~~~~~~g~~~~A~~~~~ 503 (785)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.. .| + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567788888888766666777888888899999999999999988642 33 3 3468899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 003937 504 RMLELGIKPDHITYVGVLT-ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PL 578 (785)
Q Consensus 504 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 578 (785)
++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .+.+...+..+++.+.+.|+.++|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9988532 22333433333 234568899999999988863 3445678888999999999999999999886 34
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 579 EPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 579 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
.|+ ...|...+.--..+|+.+.+..+.+++.+..|.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 443 45788888888889999999999999988877543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.7e-08 Score=99.02 Aligned_cols=190 Identities=9% Similarity=0.081 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHG-LGEEAIQLFERMLELGIKPDH-ITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 525 (785)
++-+...+.+.+..++|+++++++. ..| +...|+.....+...| ++++|+..+++..+ +.|+. .+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHHH
Confidence 3444455666666777777776553 223 4456666666666655 36777777777666 45554 36666666667
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN------ 597 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~------ 597 (785)
..|++++|...++.+.+. -+.+...|..+...+.+.|++++|++.++++ .+.| +...|+.+...+...+.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 777777777777766641 1223556666667777777777777777666 4445 45566655555444333
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+++|...+.++++++|++...+..+..+|...| .+++.+.++...+
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 456777777777777777777776766655444 4666666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=4.5e-07 Score=91.60 Aligned_cols=288 Identities=9% Similarity=-0.047 Sum_probs=164.4
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCCc------hHhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYLN------VIAFTTLLDGYIKIGDIGPARRIFDSLRD-----RD----VVAWTAML 384 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li 384 (785)
...+...|++++|.+++++.....|+ ..+++.+...|...|++++|...|+...+ ++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44556667777776666653322221 23455555555566666666555554432 11 12233334
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHhcC
Q 003937 385 VGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS---SLSVSNALITMYSKAG 461 (785)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g 461 (785)
..+...|++..+...+.+..... ...+... ....+..+...|...|
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 44445555555555444433210 0011111 1123345566777788
Q ss_pred CHHHHHHHHHhcccC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhhccC
Q 003937 462 NINAARRVFNLIHWR-------QETVSWTSMIVALAQHGLGEEAIQLFERMLEL----GIKPDH--ITYVGVLTACTHGG 528 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~--~t~~~ll~a~~~~g 528 (785)
+++.|...+...... ....++..+...+...++..++...+.+.... +..+.. ..+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 888888777655311 12334555566677778888888777765542 111111 23455556677888
Q ss_pred CHHHHHHHHHHhhhcCCCCC--CchhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCH
Q 003937 529 LVEQGQRYYNMMKNVHKIKP--TPSHFASMVDLLGRAGLLQEAYNFIENM-------PLEPD-VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~ 598 (785)
++++|...+....+...-.+ ....+..+...|...|++++|.+.+++. +..|+ ..+|..+...+...|+.
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 88888888877654211111 1233455777888889988888887765 33443 44677777888999999
Q ss_pred HHHHHHHHHHHhhCCC---------CchhHHHHHHHHHhcCChHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPD---------NSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
++|...+++++++.+. .......++..+...++.+++.+-
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999998876432 112344455566677777777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=3.4e-08 Score=95.44 Aligned_cols=189 Identities=16% Similarity=0.089 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc-cC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 003937 450 SNALITMYSKAGNINAARRVFNLIH-WR-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTH 526 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 526 (785)
+..+...|.+.|++++|...|++.. .. .++.+|+.+..+|.+.|++++|++.|++..+ +.|+. .++..+..++..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHHH
Confidence 3444555666666666666666542 11 2455566666666666666666666666666 34443 355555666666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCCHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACR----VHKNLDL 600 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~~~~ 600 (785)
.|++++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...++...++. +..+. ..+..+.
T Consensus 118 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMER 193 (259)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHHH
Confidence 66666666666665541 222 222222333333444333333332222 11111111211 11111 1111222
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+...+.......|....+|..|+..|...|++++|.+.+++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333333334444445566666666666666666666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.1e-07 Score=91.61 Aligned_cols=195 Identities=13% Similarity=-0.023 Sum_probs=122.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGE 496 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~ 496 (785)
-..+.+.|++++|...+...++.. +.+..+++.+...|.+.|++++|.+.|++... .| +..+|..+...|...|+++
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 122 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 122 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence 344455555555555555555442 33566677888889999999999999987642 23 5667888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC----HHHHHH
Q 003937 497 EAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL----LQEAYN 571 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~ 571 (785)
+|++.|++..+. .|+. .....+..++...+..+....+...... ..+....++ ++..+..... .+.+..
T Consensus 123 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 196 (259)
T d1xnfa_ 123 LAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKA 196 (259)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 999999998884 4543 3333334445555555555555554443 222222232 2333322222 222222
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 572 FIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 572 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
.+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22111 12233 346777888899999999999999999999998765554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=1.2e-08 Score=103.04 Aligned_cols=230 Identities=12% Similarity=-0.008 Sum_probs=156.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLA--SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
.|++++|+.+++...+. .|+. ..+.....++...+ +.+.+...+..+++.........+..+...+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 34456677777776654 3332 23333333433333 4566777777766654332222233445677788999999
Q ss_pred HHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 467 RRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 467 ~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
...++..... | +..+|+.+...+...|++++|...+++..+ +.|+... +...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHH--
Confidence 9999877533 3 677899999999999998888766655544 2333322 22334445666677777776654
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
.-+++...+..+...+...|+.++|.+.+.+. ...|+ ..+|..+...+...|+.++|...++++++++|.+...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 22344556667778888899999999988876 55664 56788888889999999999999999999999888888888
Q ss_pred HHHHHh
Q 003937 623 CNLYSS 628 (785)
Q Consensus 623 ~~~~~~ 628 (785)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.6e-07 Score=91.70 Aligned_cols=221 Identities=13% Similarity=0.157 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|+-+-..+.+.+.+++|+.+++++++. .|+..+ .|+.....+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~----------------------------------a~~~r~~~l 87 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT----------------------------------VWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChH----------------------------------HHHHHHHHH
Confidence 35666666777788888888888888773 455443 234444445
Q ss_pred HhcC-CHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 003937 458 SKAG-NINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 458 ~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 533 (785)
...| ++++|...++... ..| +..+|+.+...+...|++++|++.++++.+ +.|+ ...|..+...+.+.|++++|
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHH
Confidence 5544 4677777776552 222 566777777777777888888888888777 4554 45777777777777888888
Q ss_pred HHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGL------LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIA 604 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 604 (785)
...++.+.+ +.| +...|+.+..++.+.|. +++|.+.+.+. ...| +...|+.+...+. ....+++...
T Consensus 166 l~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~ 241 (315)
T d2h6fa1 166 LQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNL 241 (315)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHH
T ss_pred HHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHH
Confidence 888877765 233 34556655555555544 57787777665 4456 5777877766554 4456888899
Q ss_pred HHHHHhhCCCCc--hhHHHHHHHHHhc--CChHHHHHHHH
Q 003937 605 AEKLLLIEPDNS--GAYSALCNLYSSC--GKWEDAANIRK 640 (785)
Q Consensus 605 ~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~a~~~~~ 640 (785)
++++.++.|+.. ..+..++.+|... +..+.+...++
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998888643 3455667776543 34334433333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=9e-07 Score=87.54 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASAL 439 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 439 (785)
..|...+..+...|+.++|..+|++++..........|...+..+.+.++++.+++++..++
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444444444432111112223333333344444444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=6.7e-08 Score=97.31 Aligned_cols=252 Identities=11% Similarity=-0.035 Sum_probs=173.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhH----HHHHHHHh-------ccCchHHHHHHHHHHHHhCCCCchHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVREGPKPNNYTL----SAMLSVSS-------SLASLDHGKQIHASALRSGEASSLSVSN 451 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~-------~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 451 (785)
++......+..++|++++.+.++ ..|+..+. ..++.... ..+.++++...+..+++.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 33333334445789999998876 35776543 12222222 3345677888888877764 44556666
Q ss_pred HHHHHHHhcC--CHHHHHHHHHhcc--cCCChhHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhh
Q 003937 452 ALITMYSKAG--NINAARRVFNLIH--WRQETVSWTSMI-VALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACT 525 (785)
Q Consensus 452 ~li~~y~~~g--~~~~A~~~~~~~~--~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 525 (785)
.+...+...+ +.++|...+++.. .+++...|...+ ..+...|..++|+..+++..+ ..|+ ...|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 6666666655 4789998888763 223566665444 567778899999999998887 4564 457888888888
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLE-PDVVAWGSLLSACRVHKNLDLGKI 603 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 603 (785)
..|++++|...+....+ +.|+ ...+...+...+..+++...+... ... ++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 88888777655544332 1121 112334455566667777666655 223 345566777777888899999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998763
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=5.5e-07 Score=82.72 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=59.6
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
|+...+......|.+.|++++|++.|++. .+.| +...|..+..+|...|+++.|+..++++++++|++..+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444445555666666666666666554 3344 355566666666666666666666666666666666666666666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 003937 626 YSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~ 643 (785)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1e-06 Score=72.47 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45667778888888888776 3455 466788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 003937 635 AANIRKSMKYV 645 (785)
Q Consensus 635 a~~~~~~m~~~ 645 (785)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888887653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5.5e-06 Score=74.93 Aligned_cols=140 Identities=6% Similarity=-0.067 Sum_probs=102.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 532 (785)
...+...|+++.|.+.|+++... +...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHH
Confidence 44567889999999999987654 888899999999999999999999999998 56765 588888889999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
|...|++.... .+++... .|...|. ..+++ ..++..+...+...|++++|.+.+++++++
T Consensus 89 A~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999887641 1222110 0000000 11111 234556677788889999999999998888
Q ss_pred CCCC
Q 003937 612 EPDN 615 (785)
Q Consensus 612 ~p~~ 615 (785)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.9e-06 Score=69.70 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
...+...|++++|...|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45567778888888888877652 2334666777888888888888888888777 3445 577888999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
++|+..++++++++|+++..+..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999888877776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.27 E-value=1.2e-06 Score=71.36 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=80.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 632 (785)
.+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..|+..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999987 4566 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003937 633 EDAANIRKSM 642 (785)
Q Consensus 633 ~~a~~~~~~m 642 (785)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=8.1e-06 Score=73.77 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=84.8
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|.+.|..+. +|+...|..+...|.+.|++++|++.|++. .+.| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3455666777776665432 355556666777777777777777777666 4455 46677777778888888888
Q ss_pred HHHHHHHHHhhCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNS----------------GAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...++++++..|.+. .++..++.+|...|++++|.+.++...+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888877544332 35678899999999999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=7.5e-06 Score=79.83 Aligned_cols=192 Identities=9% Similarity=-0.014 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELG---IKPD--HITY 517 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~ 517 (785)
......|..+|++++|.+.|.+... ..+ ..+|+.+..+|.+.|++++|++.+++..+.- -.+. ..++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 3446778899999999999987631 112 3478889999999999999999999866521 1111 2356
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHhhhcC---CCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------H-H
Q 003937 518 VGVLTACT-HGGLVEQGQRYYNMMKNVH---KIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-------V-V 583 (785)
Q Consensus 518 ~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~-~ 583 (785)
..+...|. ..|++++|.+.+++..+.. +..+. ..++..+...|.+.|++++|.+.+++. ...|+ . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 66666674 4699999999998875421 11111 345777899999999999999999886 11111 1 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hHHHHHHHHHh--cCChHHHHHHHHHH
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-----AYSALCNLYSS--CGKWEDAANIRKSM 642 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 642 (785)
.+...+..+...|+.+.|...++++.+++|..+. ....|+.+|.. .+++++|...++++
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2334444567889999999999999999885332 34556666655 35688888877643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=2.4e-06 Score=78.24 Aligned_cols=115 Identities=8% Similarity=-0.092 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003937 512 PDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLL 589 (785)
Q Consensus 512 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 589 (785)
|+...+......+.+.|++++|...|.+..+. -+.+...|..+..+|.+.|++++|...|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44444555555666666666666666655541 1233455666666666666666666666665 45564 55777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
.++...|++++|...++++++++|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777888888888888877777555544444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.9e-06 Score=72.74 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...|.+.|++++|+..|++. .+.| +...|..+...+...|+++.|...++++++++|++..+|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44566777777777777776 3445 466777777778888888888888888888888877888888888888888888
Q ss_pred HHHHHHHHHhC
Q 003937 635 AANIRKSMKYV 645 (785)
Q Consensus 635 a~~~~~~m~~~ 645 (785)
|...+++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88887777653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.8e-06 Score=71.08 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=82.6
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
...|.+.|++++|...|++..+. -+.+...|..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34556677777777777766652 1233556667777777777777777777766 4456 467888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHH--HhcCChHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLY--SSCGKWEDAANI 638 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 638 (785)
++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998888777765553 344556666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.06 E-value=0.00013 Score=70.73 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred cCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-----hhHHHHHHHHh
Q 003937 492 HGLGEEAIQLFERMLE----LGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-----SHFASMVDLLG 561 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~ 561 (785)
.|++++|++.|++..+ .+-.+.. .++..+...+...|++++|..+|+++.+...-.+.. ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 3555555555555432 1111111 244555555566666666666665554321111110 11223333444
Q ss_pred hcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC
Q 003937 562 RAGLLQEAYNFIENM-PLEPD------VVAWGSLLSACRVH--KNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 613 (785)
..|+.+.|.+.+++. .+.|+ ......++.++... +.+++|...|+++.+++|
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 556666666666655 22222 11233444444331 234555555555444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.003 Score=61.14 Aligned_cols=286 Identities=13% Similarity=0.095 Sum_probs=136.7
Q ss_pred HHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChh
Q 003937 83 NTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLS 162 (785)
Q Consensus 83 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 162 (785)
..+...+.+.|.++.|..++..+.. |..++..+.+.+++..|.+.+.+.. +..+|..+..+|.......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 3444445566666666666665543 6666667777777777776665431 4446666666666554443
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCc
Q 003937 163 AGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDV 242 (785)
Q Consensus 163 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 242 (785)
.+ .+.......++.....++..|-..|..++...+++.....+ ..+.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~----------------------------~~~~ 133 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE----------------------------RAHM 133 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----------------------------TCCH
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC----------------------------ccch
Confidence 32 11122223344444556666666666666666666433111 3355
Q ss_pred ccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003937 243 VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISC 322 (785)
Q Consensus 243 ~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 322 (785)
..++-++..|++.+ .++-++.+... .+.+-...++..|-+.+- |..++-.
T Consensus 134 ~~~~~L~~lyak~~-~~kl~e~l~~~-------s~~y~~~k~~~~c~~~~l----------------------~~elv~L 183 (336)
T d1b89a_ 134 GMFTELAILYSKFK-PQKMREHLELF-------WSRVNIPKVLRAAEQAHL----------------------WAELVFL 183 (336)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHH-------STTSCHHHHHHHHHTTTC----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhC-hHHHHHHHHhc-------cccCCHHHHHHHHHHcCC----------------------hHHHHHH
Confidence 56677777777654 34444444332 112223334445544333 2345666
Q ss_pred HHhcCChHHHHHHHHH-hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 003937 323 YAKVGGVEIAQKIVEQ-SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFR 401 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 401 (785)
|.+.|++++|..+.=+ ..... +.+...+++.... |+..|-..+..|.... ++-.-.++.
T Consensus 184 y~~~~~~~~A~~~~i~~~~~~~-----------------~~~~f~e~~~k~~--N~e~~~~~i~~yL~~~-p~~i~~lL~ 243 (336)
T d1b89a_ 184 YDKYEEYDNAIITMMNHPTDAW-----------------KEGQFKDIITKVA--NVELYYRAIQFYLEFK-PLLLNDLLM 243 (336)
T ss_dssp HHHTTCHHHHHHHHHHSTTTTC-----------------CHHHHHHHHHHCS--STHHHHHHHHHHHHHC-GGGHHHHHH
T ss_pred HHhcCCHHHHHHHHHHcchhhh-----------------hHHHHHHHHHccC--ChHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 7777777776655433 11111 2222222222222 2223444444444321 222222222
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 402 SMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFN 471 (785)
Q Consensus 402 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 471 (785)
.+... + | -..++.-+.+.+++...+..+......| +..+.++|.+.|...++++.-++..+
T Consensus 244 ~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 244 VLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 22211 1 1 1233444445556666666666655444 34577788888888877655444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=3.8e-05 Score=67.64 Aligned_cols=133 Identities=9% Similarity=0.064 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
.+......+.+.|++++|+..|++.++. -|.... ..+.-......+. ...|+.+...|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 4555666788888999999988887762 221100 0000001111111 12466788889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 561 GRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...++++++++|+|+.....+..+....+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4566 5778999999999999999999999999999999999998888887766665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.5e-05 Score=65.47 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=71.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL---LQEAYNFIENM-PLEPDV---VAWGSLLSA 591 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~ll~~ 591 (785)
.+++.+...+++++|.+.|+...+. -+.++.++..+..+|.+.++ .++|.++++++ ...|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4555666667777777777766641 12345666666666665443 34577777775 334433 367788888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
|...|++++|+..++++++++|++..+...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 999999999999999999999988766554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0043 Score=60.04 Aligned_cols=281 Identities=9% Similarity=0.070 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 130 (785)
-..+.+.|-+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+.. +..+|..+...+.+.....-+
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la- 88 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA- 88 (336)
T ss_dssp ------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-
Confidence 33445555566666666666654433 5555666666666666666665442 444677777776666544332
Q ss_pred HHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCC
Q 003937 131 RMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKN 210 (785)
Q Consensus 131 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 210 (785)
.+.......++.....++..+-..|.++....+++...... ..+..+++-++..|++.+. +.-.+.+.... +
T Consensus 89 ----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s--~ 160 (336)
T d1b89a_ 89 ----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFW--S 160 (336)
T ss_dssp ----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS--T
T ss_pred ----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhcc--c
Confidence 12222334455555667777777777777777776654322 4566677777777777543 22222222211 1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 211 VSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
.. +.+.+.++.++ ...|.-++..|.+.|++++|+.+.-+- .|+.......+..+.+
T Consensus 161 ~y-------------~~~k~~~~c~~-----~~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 161 RV-------------NIPKVLRAAEQ-----AHLWAELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITK 216 (336)
T ss_dssp TS-------------CHHHHHHHHHT-----TTCHHHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHH
T ss_pred cC-------------CHHHHHHHHHH-----cCChHHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHc
Confidence 11 11222222211 122455555566666666665544322 1333333344445555
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFD 370 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 370 (785)
..+.+...++....++. ++...+.|+......-+..+..+.+++-. ++......++
T Consensus 217 ~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~--------------------~l~li~p~Le 272 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVK--------------------QLPLVKPYLR 272 (336)
T ss_dssp CSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTT--------------------CTTTTHHHHH
T ss_pred cCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHHhcC--------------------CcHHHHHHHH
Confidence 55555555555544432 22333445555555555555444444322 3333333444
Q ss_pred hcCC-CCHhHHHHHHHHHHHcCChhH
Q 003937 371 SLRD-RDVVAWTAMLVGYEQNGLNKD 395 (785)
Q Consensus 371 ~~~~-~~~~~~~~li~~~~~~g~~~~ 395 (785)
...+ .+....+++...|...++++.
T Consensus 273 ~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 273 SVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHHhCcchhHH
Confidence 3333 234566667777777776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.95 E-value=0.0013 Score=62.14 Aligned_cols=229 Identities=12% Similarity=-0.015 Sum_probs=133.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
|+..+..+...+.+.+++++|++.|++..+.| +...+. .|..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~-----------------------------------~Lg~ 42 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCF-----------------------------------NLGV 42 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHH-----------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHH-----------------------------------HHHH
Confidence 45566666667777788888888888777655 222221 2222
Q ss_pred HHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhc
Q 003937 456 MYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERMLELGIKPDHITYV-GVLTACTH 526 (785)
Q Consensus 456 ~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~ 526 (785)
+|.. ..+...|...+.......+...+..+...+.. .++.+.|...+++..+.|..+....+. ........
T Consensus 43 ~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 43 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 122 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred HHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcc
Confidence 2322 33455555555554433344444444444432 345666777777766654322211111 11111223
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENMPLEPDVVAWGSLLSACRV----HKNL 598 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~ 598 (785)
......+...+..... ..+...+..|...|.. ..+...+..+++...-..+...+..|...+.. ..+.
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 4455666666655443 2344555556665554 34566666666655323355555555555543 5689
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSS----CGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 648 (785)
+.|+..++++.+.+ ++..+..|+.+|.+ ..+.++|.+++++..+.|-.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 99999999998874 56788889999876 34899999999999877753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=8.7e-05 Score=65.18 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 357778888999999999999999999999999999999999999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=3.6e-05 Score=63.13 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCC--chhHHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH---KNLDLGKIAAEKLLLIEPDN--SGAYSALCNL 625 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 625 (785)
...+++.+...+++++|++.|++. ...| ++.++..+..++.+. ++.++|+.+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356788888999999999999988 4455 577888888887654 45567999999999988754 3478899999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00018 Score=61.84 Aligned_cols=63 Identities=19% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+|+.+..++.+.|+++.|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778888899999999999999999999999999999999999999999999999988753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=3.4e-05 Score=64.21 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHHH
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-------AYSALCN 624 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~ 624 (785)
-.+.+.|.+.|++++|.+.|.+. .+.| +...|..+..+|.+.|+++.|+..++++++++|+++. +|..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34667788889999999888877 4455 5778899999999999999999999999999887765 5666777
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+...+++++|.+.+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88888999999999987653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.78 E-value=0.00012 Score=64.17 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL 559 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (785)
..+......+.+.|++.+|+..|++.+.. .|. +. ....+. ......+. ...|+.+...
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~~-~~~~~~-~~~~~~~~--------~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------EY-GLSEKE-SKASESFL--------LAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------CC-SCCHHH-HHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hh-ccchhh-hhhcchhH--------HHHHHhHHHH
Confidence 34555666777888888888888775541 010 00 000000 00111111 2246667788
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH-HH
Q 003937 560 LGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED-AA 636 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~ 636 (785)
|.+.|++++|+..+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.....+..+....+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999887 4455 577899999999999999999999999999999999998888888777765544 45
Q ss_pred HHHHHHH
Q 003937 637 NIRKSMK 643 (785)
Q Consensus 637 ~~~~~m~ 643 (785)
+++..|-
T Consensus 154 k~~~~~f 160 (168)
T d1kt1a1 154 RTYANMF 160 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.00032 Score=61.41 Aligned_cols=129 Identities=15% Similarity=0.095 Sum_probs=90.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhh
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGR 562 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 562 (785)
.....+...|++++|++.|++.++. .+. ........+.. .+.| ....|..+...|.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGA----------KLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHG----------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHH----------HhChhhHHHHHHHHHHHHh
Confidence 3455567788888888888877641 110 00000001000 1112 34456778888999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 563 AGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
.|++++|+..+++. .+.|+ ...|..+..++...|+++.|+..++++++++|++..+...|..+..+.....+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 66674 77899999999999999999999999999999998888888777655444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00013 Score=62.82 Aligned_cols=127 Identities=12% Similarity=-0.057 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
...+......+.+.|++.+|+..|.+.+.. .|... ............. ....+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 345677778888999999999999988863 22110 0000000000001 11235777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
.|.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|+..++++++++|+|+.+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999887 5566 5789999999999999999999999999999999988776665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.00017 Score=63.28 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35577888888999999999999999999999999999999999999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.63 E-value=0.023 Score=53.17 Aligned_cols=141 Identities=14% Similarity=0.061 Sum_probs=80.9
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD-RDVVAWTAMLVGYEQ----NGLNKDAVELFRSMVREGPKPNNYTLSAML 419 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 419 (785)
|+..+..|...+.+.+++++|.+.|++..+ .+..++..|-..|.. ..+...|...+......+. |.. ...+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~a--~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SNG--CHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHH--HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cch--hhccc
Confidence 466788889999999999999999998764 466666666666665 4577778887777766542 221 11111
Q ss_pred HH----HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 003937 420 SV----SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ 491 (785)
Q Consensus 420 ~a----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~ 491 (785)
.. .....+.+.+...+....+.|.... ...+...+.. ......|...+.......+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 11 2224455666666666665553222 1122222221 23444555555544444455555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.60 E-value=0.0007 Score=59.02 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+|+.+..++...|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667777899999999999999999999999999999999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.00023 Score=62.76 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=85.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKN 597 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 597 (785)
..........|++++|.+.|......+.-.+-.. +....-......-++. -....+..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3344567888999999999988875321111000 0000011111111111 124567888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccC
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-----YVGVKKT 650 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 650 (785)
+++|...++++++.+|.+...|..++.+|...|++++|.+.|+++. +.|+.|.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999984 3577643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.49 E-value=0.00016 Score=58.15 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=38.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhc
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRA 563 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 563 (785)
...+.+.|++++|+..|++..+ ..|+ ..+|..+..++.+.|++++|...|+...+ +.|+ ...+..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHC
Confidence 3344445555555555555544 2343 23444444455555555555555544443 1222 33444444444444
Q ss_pred CCHHHHHHHHH
Q 003937 564 GLLQEAYNFIE 574 (785)
Q Consensus 564 g~~~~A~~~~~ 574 (785)
|++++|.+.++
T Consensus 98 g~~~~A~~~l~ 108 (112)
T d1hxia_ 98 HNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=3.7e-05 Score=81.01 Aligned_cols=109 Identities=7% Similarity=-0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 593 (785)
.+..+...+.+.|+.++|...+....+ ..| ...+..+.+++...|++++|...+++. .+.|+ ...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 445555555566666666555544332 011 234555666666666666666666655 34453 346666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..|+..+|...|.+++..+|+.+.++..|..++.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 66666666666666666666566666666655543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=0.00027 Score=59.90 Aligned_cols=124 Identities=17% Similarity=0.072 Sum_probs=70.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ 567 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (785)
|-+.+.+++|+..|+...+ +.|+.. ++..+..++...+.+..+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 4455667778888888777 456543 56666656554332211111 112223
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 568 EAYNFIENM-PLEP-DVVAWGSLLSACRVH-----------KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 568 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
+|.+.|++. .+.| +..+|..+..+|... ++++.|...++++++++|++...+..|... .+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 444444443 2334 244455554444332 246889999999999999887666555544 45
Q ss_pred HHHHHHHHHhCCC
Q 003937 635 AANIRKSMKYVGV 647 (785)
Q Consensus 635 a~~~~~~m~~~g~ 647 (785)
|.+++.+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.26 E-value=0.00011 Score=62.54 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=63.1
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 560 LGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRV----------HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
|-|.+.+++|.+.|++. .+.|+ +.+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34556677777777766 34453 4555555555542 345688999999999999999999999999998
Q ss_pred hcCC-----------hHHHHHHHHHHHhC
Q 003937 628 SCGK-----------WEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~-----------~~~a~~~~~~m~~~ 645 (785)
..|+ +++|.+.+++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 8764 57788888877653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.00085 Score=57.58 Aligned_cols=63 Identities=16% Similarity=-0.000 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD-----------NSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...|+.+..++...|++++|...+++++++.|. ...++..++.+|...|++++|...+++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888889999999999999988875432 122577899999999999999999999864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0018 Score=53.26 Aligned_cols=60 Identities=7% Similarity=0.010 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
.+..+...|...|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|...++.+.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344556667777777777777777776 3443 34666666677777777777777766553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.0018 Score=49.89 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM--------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
.+...+.+.|++++|...|++. ...++ ..+++.|..++.+.|++++|+..++++++++|+++.++..+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 4555666666666666666554 11233 4578889999999999999999999999999999887776643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00013 Score=76.71 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACT 525 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 525 (785)
...+..+...+.+.|+.++|...+..........++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHH
Confidence 4445556666667777777766554432210123556666777777777777777777777 56655 47777777777
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
..|+..+|...|.+... --+|-...+..|...|.+.
T Consensus 198 ~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 77777777777776654 2345566666666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.84 E-value=0.00094 Score=62.76 Aligned_cols=123 Identities=10% Similarity=0.028 Sum_probs=69.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHH
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 568 (785)
+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45667777777777766 34543 4666666667777777777777766654 2343 2233333334433333333
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 569 AYNFIENM--PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 569 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 32222111 11232 2333344455677888888888888888888866543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.54 E-value=0.006 Score=51.94 Aligned_cols=32 Identities=13% Similarity=-0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|+.+..++...|++++|...+++++++.|..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56777888999999999999999999986643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.52 E-value=0.011 Score=51.41 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
+..+...+.+.|++++|...++++ ...| +...|..++.++...|+.++|.+.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444555566666666666665555 3344 4555666666666666666666666555
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.45 E-value=0.00099 Score=62.61 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=84.9
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 602 (785)
.+.|++++|...+++..+ .-+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999986 33456789999999999999999999999988 55675 445555555544433333222
Q ss_pred HHHHHHHh-hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 603 IAAEKLLL-IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 603 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
........ .+|++...+...+..+...|+.++|...+++..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111 23444456667788899999999999999998754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.0088 Score=45.73 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN-------SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34567778899999999999999999875543 346889999999999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.89 E-value=1 Score=34.77 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=91.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
+...|..++..++..+.... .+..-|+-++--....-+-+...+.++.+-+.+.+. +++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 44567777777777776652 223333334333333444455555555554433322 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
...-+-.++ .+....+.-++...+.|.-+.-..++..+++.+..++.....++++|-+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555444443 233445566777888899998899999888766558889999999999999999999999999999985
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=4.1 Score=40.35 Aligned_cols=325 Identities=9% Similarity=-0.016 Sum_probs=159.8
Q ss_pred HHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHH--hcCChhHHHHHhhcCCCCCh--hhHHHHHHHHHccCCh
Q 003937 20 LQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA--KTESISYAKKVFDEMPVKTL--CSWNTILSAYAKQGRL 95 (785)
Q Consensus 20 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 95 (785)
+....+.|+...+..+...+. +. | ...|-..-..-. ......+...+++.-+.... ..-...+..+.+.+++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~--dy-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w 88 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLK--DY-P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGT--TS-T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHhhhc--CC-C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCH
Confidence 334455677777766655552 21 1 222322222222 34456666666666554211 1233446677788888
Q ss_pred hHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 003937 96 DLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTG 175 (785)
Q Consensus 96 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 175 (785)
......+..-+ .+...--....+..+.|+..+|...+...-..|.. ..+....++..+.+.|
T Consensus 89 ~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~~~~~~~ 150 (450)
T d1qsaa1 89 RGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFSVWRASG 150 (450)
T ss_dssp HHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHHHHHHTT
T ss_pred HHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHhcC
Confidence 77776664432 23433445667777888888888888777655421 1223344555555555
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhh-
Q 003937 176 LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQ- 254 (785)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~- 254 (785)
..+...+-.-+......|+...|..+...++..........+........+.... ... ..+......+..++.+
T Consensus 151 -~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~---~~~-~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 151 -KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFA---RTT-GATDFTRQMAAVAFASV 225 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHH---HHS-CCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHH---hcC-CCChhhhHHHHHHHHHH
Confidence 3444444455666667788999999888877444444444444433322222221 111 1222222222222222
Q ss_pred -CCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHH
Q 003937 255 -NGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQ 333 (785)
Q Consensus 255 -~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 333 (785)
..+.+.|..++..........++... .+-. .+.......+..+.+.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~~~~~~~--~~~~-------------------------------~~a~~~~~~~~~~~a~ 272 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQLNEDQIQ--ELRD-------------------------------IVAWRLMGNDVTDEQA 272 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHH--HHHH-------------------------------HHHHTSCSTTCCHHHH
T ss_pred hccChhHHHHHHHhhhhcccccHHHHH--HHHH-------------------------------HHHHHHHHcCchHHHH
Confidence 23455566655554222222221111 0000 1111111223334444
Q ss_pred HHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 334 KIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
..+........+.....-.+......+++..+...|..+... .....--+..++...|+.++|...|....
T Consensus 273 ~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 273 KWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 444333222222222222333344556777777777776642 12222335566777788888877777765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.08 E-value=1.1 Score=35.87 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHHHcC
Q 003937 392 LNKDAVELFRSMVREG 407 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g 407 (785)
++++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3456666666655554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.55 E-value=1.2 Score=35.47 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS----CGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 647 (785)
.+.++|.+.++++.+.. ++.....|+.+|.+ ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45677777777776643 45567777777766 3578888888888877765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.14 E-value=0.51 Score=36.89 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 581 DVVAWGSLLSACRVH---KNLDLGKIAAEKLLLIEPDNS-GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+.|.-....++.++ .+.++|+.+++.+...+|.+. ..+..|+-+|.+.|++++|.++++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444433 234566666666666666443 4556666666667777777666666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.76 E-value=4.1 Score=31.38 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
.-.+.-++.+.++|+-++-.++++.+.+. -+|++.....+..||.+.|...++.+++.+.-+ .|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 33455567777777777777777776663 467777777777888888888888888877765 444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.30 E-value=1.6 Score=33.91 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 552 HFASMVDLLGRAG---LLQEAYNFIENM-PLEP-D-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 552 ~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+--.+..++.++. +++++..++++. ...| + ...|-.|.-+|.+.|+++.|...++++++++|+|..+
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3333444455443 345666666665 2234 3 2466677778899999999999999999999977643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.66 E-value=21 Score=34.73 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=30.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+...|....|...+..+.... ++.....++....+.|.++.|+....+.
T Consensus 391 L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 391 LMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 456677777777666665422 3445556666777777777776655544
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.36 E-value=3.1 Score=30.39 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 494 LGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
+.-++.+-++.+....+-|++....+.+.||-+.+++.-|.++|+.++. ...++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~--K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 3445666677777778899999999999999999999999999998875 34445667777654
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