Citrus Sinensis ID: 003938

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-----

MNPLCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAVKTVKPSLSAQVSSVGTDCDKSSAANVVVESVTESRYNGNGGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSSDSPSCLVEE

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEccEEEEEEcccccccccccccccccEEEccccHHHHHHcccccHHccHHHHcccccccccccccEEEcccccccccEEEccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccEEEEEEEcccccccccEEEEEEccEEEEEccEEEEEEcccccEEEEEEcEEEEEEEEEEEEEEEEccEEEEEcccccEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEEcccEEEEEccccccccccccccccEEEEEcccccccccccccccEEEcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEcccHHHHHccccccccccccccccccccccccc

ccccEEEcEEEccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHcccccccEEEEEEccEEEEEEEcccccEEEcccHccccEEEccHHHHHHHcccccccccccccccccccEEEEEEEEEEEEccccccEEEEEccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccccEcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHcHccccccccccccccccccccccccccccccHHHccHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHcccHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccEEEEEcccccccEEHHHccccccEEEEEEcEEEEEEEccccEEEEEcccEEEEEEEEEcEEHHcccEEEEEEccccEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEcccccccccccccHHEEEEccccccHHHccccccccccHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEccccHHHHccccccccccccccccccccccccc

mnplcciapvsidrdranpvvakstahcqlghetaavktvkpslsaqvssvgtdcdkssaaNVVVESVTesryngngggvsASVAGILYKWVNygkgwrsrwFVLEDGVLsyykihgpdkilmspardnnvrviGEDSIRFMRKANwsshrlgfaarqckpfgeiHLKVSSvrasksddkrltiftgtktlhlrcisrEDRTVWIDALQAAKDLfprlltstdfspsedvvvSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATvvdetkerdsycgqgnrrysdfysvmsegsasdsdaenesqdgadvetdeddgiffdtndflssealRSVSYRSREAMGhaciydkellfsdrlrgveneirpiqypyvkrrdtlpepkekekpvgLWSIIKdnigkdlsgvclpvyfneplssLQKCFEDLEYSYLVDqasawgkqGNDLMRILNVAAFAVSgyastegrqckpfnpllgetyeadypdkglrffsekvshhpmivACHWKfwgrsiqldpvgvltlqfddgetfqwsKVTTSIYNIILGKiycdhygtmrirgsgnyscklkfkeqsiidrnphqvhgfvqdnrtGEKVAMLVGKWDEAMyyvlgdpttkpkgydpmtEAVLLWERgktvtktrynltpfaislneltpglldklpptdsrlrpdqrylENGEYELANAEKLRLEQLQRQARQLQesgwqpswfckdedgcyrymggywearekgdwgdiaeifgqssdspsclvee

mnplcciapvsidrdranPVVAKSTahcqlghetaavktvkpSLSAQVSsvgtdcdkssaANVVVESvtesryngngggvsaSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGpdkilmspardnnVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVssvrasksddkrltiftgtktlhlrcisrEDRTVWIDALQAAKDLFPRlltstdfspsedvvvsTERLRLRllqegvgdsvIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELeatvvdetkerdsycgqgnrrysdFYSVMSEgsasdsdaeneSQDGADVETDEDDGIFFdtndflsseaLRSVSYRSREAMGHACIYDKELLFSDRLRgveneirpiqypyvkrrdtlpepkekekpvglWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGyastegrqckpfnPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEqsiidrnphqvhgfvqdnrtgEKVAMLVGKWDEAMYYVLGdpttkpkgydPMTEAVLLWERGKTVTKTRYNLTPFaislneltpglldklpptdsrlrpDQRYLENGEYELANAEKLRLEQLQRQARqlqesgwqpswfckdEDGCYRYMGGYWEAREKGDWGDIAEIfgqssdspsclvee

MNPLCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAVKTVKPSLSAQVSSVGTDCDKSSAANVVVESVTESRYngngggvsasvagILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANaeklrleqlqrqarqlqeSGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSSDSPSCLVEE

***LCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAV************************NVVVESVTESRYNGNGGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVR*****DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLET*************************************************************IFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQYPYVK**************VGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLL*********************************************GWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIF*************

*NPLCCIA*****************************************************************************GILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGP************VRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSS**************************REDRTVWIDALQAAKDLFP**********SEDVVVSTERLRLRLLQEGVGDSV**************************************************************************************************************************************************************************VGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVL***********PMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSS*********

MNPLCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAVKTVK*******************ANVVVESVTESRYNGNGGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTSTDF*********TERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDETKERDSYCGQGNRRYSDFYSV**********************TDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQS**********

*NPLCCIAPVSIDRDRANPVVAKSTAHC***HE***********************************************SASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKA*************CKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR***********DVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDETKERD****************************************************L*********************************************YVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPT***KG***MTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSS*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MNPLCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAVKTVKPSLSAQVSSVGTDCDKSSAANVVVESVTESRYNGNGGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHWKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELxxxxxxxxxxxxxxxxxxxxxGWQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSSDSPSCLVEE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		785	2.2.26 [Sep-21-2011]
Q9SAF0		816	Oxysterol-binding protein	yes	no	0.974	0.937	0.746	0.0
Q8L751		814	Oxysterol-binding protein	no	no	0.871	0.840	0.623	0.0
O80866		760	Oxysterol-binding protein	no	no	0.839	0.867	0.603	0.0
Q940Y1		721	Oxysterol-binding protein	no	no	0.828	0.901	0.543	0.0
Q9SU36		693	Oxysterol-binding protein	no	no	0.810	0.917	0.523	0.0
Q8S8P9		489	Oxysterol-binding protein	no	no	0.467	0.750	0.701	1e-161
Q9H4L5		887	Oxysterol-binding protein	yes	no	0.625	0.553	0.338	6e-74
O14340		1310	Oxysterol-binding protein	yes	no	0.428	0.256	0.414	1e-73
Q9DBS9		855	Oxysterol-binding protein	yes	no	0.624	0.573	0.345	5e-72
Q9BZF3		934	Oxysterol-binding protein	no	no	0.431	0.362	0.436	2e-71

>sp\|Q9SAF0\|ORP1D_ARATH Oxysterol-binding protein-related protein 1D OS=Arabidopsis thaliana GN=ORP1D PE=2 SV=1	Back alignment and function desciption

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/805 (74%), Positives = 674/805 (83%), Gaps = 40/805 (4%)

Query: 1   MNPLCCIAPVSIDRDRANPVVAKSTAHCQLGHETAAVK--TVKPSLSAQVSSVGTDCDKS 58
           MNPLCCIAPVSID DR NPVVAKS+ H  LG E   V     KPS S Q S +  D  + 
Sbjct: 1   MNPLCCIAPVSID-DRTNPVVAKSSNH-HLGLEAIPVSKHASKPSFSTQASWISQDQLER 58

Query: 59  SAANVVVESVTESR-----------YNGNGGGVSASVAGILYKWVNYGKGWRSRWFVLED 107
            ++ VV +   + +           + GN  G  A VAGI+YKWVNYGKGWR+RWF LED
Sbjct: 59  LSSEVVDDVNLDGKDASSSSNKGCFFFGNCVGAGAGVAGIMYKWVNYGKGWRARWFELED 118

Query: 108 GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANW-SSHRLGFAA----RQCKPF 162
           GVLSYYKIHGPDKI+M+P+R+  VRVIGE+S+R++RKA+  SS+RLG +A    R CKPF
Sbjct: 119 GVLSYYKIHGPDKIVMNPSREKGVRVIGEESVRYIRKASCGSSNRLGASAVAASRPCKPF 178

Query: 163 GEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRLLTST 222
           GEIHLKVSS+RASKSDDKRL IFTGTKTLHLRC+S+E+R  W++A Q AKDLFPR+  S 
Sbjct: 179 GEIHLKVSSIRASKSDDKRLAIFTGTKTLHLRCVSKENRAAWVEAFQVAKDLFPRV-ASG 237

Query: 223 DFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGT 282
           D  PSED VVSTE+LR +LLQEGVG++V+KDCE+IMLSE S LQN+L  L  KHI+LL T
Sbjct: 238 DILPSEDAVVSTEKLREKLLQEGVGETVVKDCEAIMLSEVSVLQNRLKVLTHKHIILLDT 297

Query: 283 LRQLETEKMELEATVVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADV 342
           LRQLETEK+ELEATVVDETKE DS CGQG RR+SDFYSVMSE SASDS+A+NESQDGADV
Sbjct: 298 LRQLETEKIELEATVVDETKEHDSCCGQG-RRFSDFYSVMSEVSASDSEADNESQDGADV 356

Query: 343 ETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRGVENEIRPIQY 402
           E+DEDD  +FDTND LS+EA+RS SYRSREA G+  IYDK+  FSDRL   +   R  QY
Sbjct: 357 ESDEDDVPYFDTNDILSAEAMRSASYRSREAEGNGSIYDKDPFFSDRL---QIPARIPQY 413

Query: 403 PYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSY 462
           PYV+RRD LPEPKEKEKPVGLWSIIK+NIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSY
Sbjct: 414 PYVRRRDNLPEPKEKEKPVGLWSIIKENIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSY 473

Query: 463 LVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFF 522
           L+D+A  WGKQGN+LMRILN+AAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFF
Sbjct: 474 LIDRALEWGKQGNELMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFF 533

Query: 523 SEKVSHHPMIVACH--------W-------KFWGRSIQLDPVGVLTLQFDDGETFQWSKV 567
           SEKVSHHPMIVACH        W       KFWGRSIQLDPVGVLTL+FDDGE +QWSKV
Sbjct: 534 SEKVSHHPMIVACHCEGQGWNFWGDSNIKGKFWGRSIQLDPVGVLTLKFDDGEIYQWSKV 593

Query: 568 TTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKV 627
           TTSIYNIILGK+YCDHYGTMRI+G  NYSC+LKFKEQS+IDRNP QVHGFVQDNRTGEKV
Sbjct: 594 TTSIYNIILGKLYCDHYGTMRIKGGSNYSCRLKFKEQSVIDRNPRQVHGFVQDNRTGEKV 653

Query: 628 AMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTP 687
           A+L+GKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWER K+ TKTRYNL+PFAISLNE+TP
Sbjct: 654 AILIGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERDKSPTKTRYNLSPFAISLNEITP 713

Query: 688 GLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESGWQPSWFCKDED 747
           G++DKLPPTDSRLRPDQR+LENGEYE ANAEKLRLEQLQRQAR+LQE GW+P WF KDE+
Sbjct: 714 GMIDKLPPTDSRLRPDQRHLENGEYESANAEKLRLEQLQRQARRLQEKGWKPRWFEKDEE 773

Query: 748 GCYRYMGGYWEAREKGDWGDIAEIF 772
           G YRY+GGYWEAREK DW  I +IF
Sbjct: 774 GNYRYLGGYWEAREKKDWDRITDIF 798

May be involved in the transport of sterols.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8L751\|ORP1C_ARATH Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1	Back alignment and function description

>sp\|O80866\|ORP1A_ARATH Oxysterol-binding protein-related protein 1A OS=Arabidopsis thaliana GN=ORP1A PE=2 SV=1	Back alignment and function description

>sp\|Q940Y1\|ORP2A_ARATH Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1	Back alignment and function description

>sp\|Q9SU36\|ORP2B_ARATH Oxysterol-binding protein-related protein 2B OS=Arabidopsis thaliana GN=ORP2B PE=2 SV=2	Back alignment and function description

>sp\|Q8S8P9\|ORP1B_ARATH Oxysterol-binding protein-related protein 1B OS=Arabidopsis thaliana GN=ORP1B PE=2 SV=1	Back alignment and function description

>sp\|Q9H4L5\|OSBL3_HUMAN Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1	Back alignment and function description

>sp\|O14340\|YB35_SCHPO Oxysterol-binding protein homolog C2F12.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.05c PE=1 SV=2	Back alignment and function description

>sp\|Q9DBS9\|OSBL3_MOUSE Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=2	Back alignment and function description

>sp\|Q9BZF3\|OSBL6_HUMAN Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		785
255547970		826	Oxysterol-binding protein, putative [Ric	0.996	0.946	0.800	0.0
449435005		811	PREDICTED: oxysterol-binding protein-rel	0.985	0.954	0.790	0.0
449517010		811	PREDICTED: LOW QUALITY PROTEIN: oxystero	0.985	0.954	0.789	0.0
225424570		796	PREDICTED: oxysterol-binding protein-rel	0.985	0.972	0.802	0.0
296081399		773	unnamed protein product [Vitis vinifera]	0.961	0.976	0.794	0.0
224107723		797	predicted protein [Populus trichocarpa]	0.983	0.968	0.782	0.0
357463185		816	Oxysterol-binding protein-related protei	0.992	0.954	0.758	0.0
356567496		823	PREDICTED: oxysterol-binding protein-rel	0.993	0.947	0.763	0.0
356567498		843	PREDICTED: oxysterol-binding protein-rel	0.993	0.925	0.745	0.0
356540215		824	PREDICTED: oxysterol-binding protein-rel	0.993	0.946	0.751	0.0

>gi\|255547970\|ref\|XP_002515042.1\| Oxysterol-binding protein, putative [Ricinus communis] gi\|223546093\|gb\|EEF47596.1\| Oxysterol-binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1340 bits (3468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/829 (80%), Positives = 722/829 (87%), Gaps = 47/829 (5%)

Query: 1   MNPLCCIAPVSIDRDRANP--VVAKSTAHCQLGHE----------TAAVKTV----KPSL 44
           MNPLCCIAPVSID+DRANP  VVAKS +H QLG E              KTV    KPS 
Sbjct: 1   MNPLCCIAPVSIDKDRANPNPVVAKSVSHNQLGLEGGLYNSNSNSNNNYKTVNHSSKPSF 60

Query: 45  SAQVSSVGTDCDKSSAANV--------VVE--SVTESRYNGNGGGVSASVAGILYKWVNY 94
           SAQVSSVGTD D+ S   V        V+E  +  E+  + +GGG   +VAGILYKWVNY
Sbjct: 61  SAQVSSVGTDLDRLSGVGVGNHHNQDFVLEELATNEAARDYSGGG---AVAGILYKWVNY 117

Query: 95  GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLG- 153
           GKGWRSRWFVLEDGVLSYYKIHGP KIL SPAR+ +VRVIG++S+R+MRKANWSS+RLG 
Sbjct: 118 GKGWRSRWFVLEDGVLSYYKIHGPYKILTSPAREKDVRVIGDESLRYMRKANWSSNRLGA 177

Query: 154 -FAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212
              A+QCKPFGEIHLKV+SVRASKSDDKRLTIFTGTKTLHLRCISREDR  W+++LQA K
Sbjct: 178 GVGAKQCKPFGEIHLKVASVRASKSDDKRLTIFTGTKTLHLRCISREDRAGWLESLQATK 237

Query: 213 DLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNAL 272
           DLFPRLLTS+DFSP EDVVVSTE+LRLRLLQEG+G+ VIKDCESIML E S+LQNQL AL
Sbjct: 238 DLFPRLLTSSDFSPYEDVVVSTEKLRLRLLQEGIGEPVIKDCESIMLVEVSELQNQLKAL 297

Query: 273 QRKHIMLLGTLRQLETEKMELEATVVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDA 332
           QRKHI+LL TLRQLETEK+ELE TVVDETKER+SYCGQ NRR+SDFYSVMSEGS SDS+A
Sbjct: 298 QRKHIILLDTLRQLETEKIELETTVVDETKERESYCGQANRRFSDFYSVMSEGSPSDSEA 357

Query: 333 ENESQDGADVETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYDKELLFSDRLRG 392
           +NESQDGADVETDEDDG FFDTNDFLSS+ALRS SYRSRE  G+ACIYD +L FSD LRG
Sbjct: 358 DNESQDGADVETDEDDGTFFDTNDFLSSDALRSASYRSRETTGNACIYDSDLSFSDHLRG 417

Query: 393 VE-NEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSL 451
               EIR I+YPYVKRRD LP+PKEKEKPVGLWSIIK+NIGKDLSGVCLPVYFNEPLSSL
Sbjct: 418 ASGKEIRTIKYPYVKRRDNLPDPKEKEKPVGLWSIIKENIGKDLSGVCLPVYFNEPLSSL 477

Query: 452 QKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYE 511
           QKCFEDLEYS+LVD+A  WGKQGNDLMRILN+AAFAVSGYASTEGRQCKPFNPLLGETYE
Sbjct: 478 QKCFEDLEYSHLVDRALEWGKQGNDLMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYE 537

Query: 512 ADYPDKGLRFFSEKVSHHPMIVACH--------W-------KFWGRSIQLDPVGVLTLQF 556
           ADYPDKGLRFFSEKVSHHPMIVACH        W       KFWGRSIQLDPVGVLTLQF
Sbjct: 538 ADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNIKGKFWGRSIQLDPVGVLTLQF 597

Query: 557 DDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQVHG 616
           +DG+TFQWSKVTTSIYNIILGK+YCDHYGTMRI+GSGNYSCKLKFKEQSIIDRNPHQVHG
Sbjct: 598 EDGDTFQWSKVTTSIYNIILGKLYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHG 657

Query: 617 FVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLT 676
           FVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPM EAVLLWER K+VT+TRYNLT
Sbjct: 658 FVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMAEAVLLWERDKSVTRTRYNLT 717

Query: 677 PFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQESG 736
           PFAI+LNELTPGLL+KLPPTDSRLRPDQR+LENGEYELANAEKLRLEQLQRQAR+LQE G
Sbjct: 718 PFAITLNELTPGLLEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKLQERG 777

Query: 737 WQPSWFCKDEDGCYRYMGGYWEAREKGDWGDIAEIFGQSSDSPSCLVEE 785
           WQP WF KDE+ CYRY+GGYWEAR++  W  I++IFGQ+SDS SCLVEE
Sbjct: 778 WQPRWFRKDEESCYRYVGGYWEARDRKKWDGISDIFGQNSDSSSCLVEE 826

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449435005\|ref\|XP_004135286.1\| PREDICTED: oxysterol-binding protein-related protein 1D-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449517010\|ref\|XP_004165539.1\| PREDICTED: LOW QUALITY PROTEIN: oxysterol-binding protein-related protein 1D-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225424570\|ref\|XP_002282089.1\| PREDICTED: oxysterol-binding protein-related protein 1D-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296081399\|emb\|CBI16832.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224107723\|ref\|XP_002314577.1\| predicted protein [Populus trichocarpa] gi\|222863617\|gb\|EEF00748.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357463185\|ref\|XP_003601874.1\| Oxysterol-binding protein-related protein [Medicago truncatula] gi\|355490922\|gb\|AES72125.1\| Oxysterol-binding protein-related protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356567496\|ref\|XP_003551955.1\| PREDICTED: oxysterol-binding protein-related protein 1D-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356567498\|ref\|XP_003551956.1\| PREDICTED: oxysterol-binding protein-related protein 1D-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356540215\|ref\|XP_003538585.1\| PREDICTED: oxysterol-binding protein-related protein 1D-like isoform 1 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		785
TAIR\|locus:2132492		814	ORP1C "OSBP(oxysterol binding	0.868	0.837	0.609	2.6e-230
TAIR\|locus:2052801		760	ORP1A "OSBP(oxysterol binding	0.559	0.577	0.613	1.8e-216
TAIR\|locus:2127565		721	ORP2A "OSBP(oxysterol binding	0.505	0.550	0.614	5.7e-189
TAIR\|locus:2135580		693	ORP2B "OSBP(oxysterol binding	0.466	0.528	0.629	1.6e-182
TAIR\|locus:2052816		489	ORP1B "OSBP(oxysterol binding	0.476	0.764	0.660	1.1e-140
UNIPROTKB\|D4A2H7		791	Osbpl7 "Oxysterol-binding prot	0.440	0.437	0.400	2.8e-75
UNIPROTKB\|I3L7E7		969	OSBPL6 "Oxysterol-binding prot	0.373	0.302	0.451	4.7e-73
RGD\|1309141		969	Osbpl7 "oxysterol binding prot	0.440	0.357	0.402	1.2e-72
MGI\|MGI:1918970		855	Osbpl3 "oxysterol binding prot	0.435	0.4	0.399	3.8e-72
UNIPROTKB\|Q9BZF3		934	OSBPL6 "Oxysterol-binding prot	0.373	0.313	0.451	4e-72

TAIR\|locus:2132492 ORP1C "OSBP(oxysterol binding protein)-related protein 1C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2203 (780.6 bits), Expect = 2.6e-230, Sum P(2) = 2.6e-230
 Identities = 440/722 (60%), Positives = 533/722 (73%)

Query:    87 ILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKAN 146
             ILYKWVNYG+GWR RWFVL+DGVLSYYKIHGPDKI +SP  +   +VIG++S R + + N
Sbjct:   109 ILYKWVNYGRGWRPRWFVLQDGVLSYYKIHGPDKIFVSPETEKGSKVIGDESARMISRHN 168

Query:   147 WSSHRLGFAARQC----KPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRT 202
                 R G ++  C    KPFGE+HLKVSSVR S+SDDKR +IFTGTK LHLR  +REDRT
Sbjct:   169 ----RRGGSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGTKRLHLRAETREDRT 224

Query:   203 VWIDALQAAKDLFPRLLTSTDFSPSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEH 262
              W++ALQA KD+FPR+  S   +P+ ++ +STE++RLRL++EGV +  I+DCE IM SE 
Sbjct:   225 TWVEALQAVKDMFPRMSNSELMAPTNNLAMSTEKIRLRLIEEGVSELAIQDCEQIMKSEF 284

Query:   263 SDLQNQLNALQRKHIMLLGTLRQLETEKMELEATVVDET-KERDSYCGQGNRRYSDFYSV 321
             S LQ+QL  L++K  +L+ TLRQLETEK++LE TVVDE+ ++ D+ C  G  R+  F   
Sbjct:   285 SALQSQLVLLKQKQWLLIDTLRQLETEKVDLENTVVDESQRQADNGCS-GELRHEKF--- 340

Query:   322 MSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSSEALRSVSYRSREAMGHACIYD 381
              SEG+A++SD +NE  D A+ E DE++  FFDT DFLSS + +S     R +   +   D
Sbjct:   341 -SEGTATESDDDNERGDAAEEEFDEEENTFFDTRDFLSSSSFKSSGSGFRTSSFSS---D 396

Query:   382 KELLFSDRLRGVENEIRPI--QYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVC 439
             ++   S+    ++  I+ I   YP VKRR  LP+P EKEK V LWS+IKDNIGKDL+ VC
Sbjct:   397 EDGFESED--DIDPSIKSIGCNYPRVKRRKNLPDPVEKEKSVSLWSMIKDNIGKDLTKVC 454

Query:   440 LPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQC 499
             LPVYFNEPLSSLQKCFEDLEYSYL+D+A  +GK+GN LMRILNVAAFAVSGYASTEGR C
Sbjct:   455 LPVYFNEPLSSLQKCFEDLEYSYLLDRAFEYGKRGNSLMRILNVAAFAVSGYASTEGRIC 514

Query:   500 KPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACH-----WKFWG----------RSI 544
             KPFNPLLGETYEADYPDKGLRFFSEKVSHHPM+VACH     WKFWG          RSI
Sbjct:   515 KPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCDGTGWKFWGDSNLRSKFWGRSI 574

Query:   545 QLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQ 604
             QLDPVGVLTLQFDDGE  QWSKVTTSIYN+ILGK+YCDHYGTMRI GS  YSCKLKFKEQ
Sbjct:   575 QLDPVGVLTLQFDDGEILQWSKVTTSIYNLILGKLYCDHYGTMRIEGSAEYSCKLKFKEQ 634

Query:   605 SIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWER 664
             SIIDRNPHQVHG VQ N++G+ VA + GKWDE++++V GD + K K  + M+ A LLW+R
Sbjct:   635 SIIDRNPHQVHGIVQ-NKSGKTVATMFGKWDESIHFVTGDCSGKGKLSEDMSGAQLLWKR 693

Query:   665 GKTV-TKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANXXXXXXX 723
              K     T+YNLT FAI+LNELTPGL ++LPPTDSRLRPDQRYLENGE+E+AN       
Sbjct:   694 SKPPGNATKYNLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKLRLE 753

Query:   724 XXXXXXXXXXXSGWQPSWFCKDEDG-CYRYMGGYWEAREKGDWGDIAEIFGQSSDSPSCL 782
                         GW+P WF K++    YRY GGYWEARE G W D  +IFG   DS   +
Sbjct:   754 QRQRQARKMQERGWKPRWFMKEKGSESYRYKGGYWEAREDGSWVDCPDIFGHI-DSDQQM 812

Query:   783 VE 784
             +E
Sbjct:   813 IE 814

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008142 "oxysterol binding" evidence=ISS

GO:0008202 "steroid metabolic process" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR\|locus:2052801 ORP1A "OSBP(oxysterol binding protein)-related protein 1A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127565 ORP2A "OSBP(oxysterol binding protein)-related protein 2A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135580 ORP2B "OSBP(oxysterol binding protein)-related protein 2B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2052816 ORP1B "OSBP(oxysterol binding protein)-related protein 1B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A2H7 Osbpl7 "Oxysterol-binding protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L7E7 OSBPL6 "Oxysterol-binding protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1309141 Osbpl7 "oxysterol binding protein-like 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1918970 Osbpl3 "oxysterol binding protein-like 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BZF3 OSBPL6 "Oxysterol-binding protein-related protein 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAF0	ORP1D_ARATH	No assigned EC number	0.7465	0.9745	0.9375	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		785
pfam01237		335	pfam01237, Oxysterol_BP, Oxysterol-binding protein	1e-135
cd13294		100	cd13294, PH_ORP_plant, Plant Oxysterol binding pro	2e-50
cd13292		103	cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol bin	1e-14
cd13283		100	cd13283, PH_GPBP, Goodpasture antigen binding prot	4e-14
cd01247		100	cd01247, PH_FAPP1_FAPP2, Four phosphate adaptor pr	2e-12
cd13284		99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	3e-11
cd13293		88	cd13293, PH_CpORP2-like, Cryptosporidium-like Oxys	2e-10
smart00233		102	smart00233, PH, Pleckstrin homology domain	1e-08
cd13290		102	cd13290, PH_ORP9, Human Oxysterol binding protein	1e-07
cd00821		92	cd00821, PH, Pleckstrin homology (PH) domain	1e-05
cd13291		107	cd13291, PH_ORP10_ORP11, Human Oxysterol binding p	1e-05
cd01235		106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	2e-05
pfam00169		101	pfam00169, PH, PH domain	3e-05
cd13298		106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	3e-05
cd13282		96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	4e-05
cd13289		90	cd13289, PH_Osh3p_yeast, Yeast oxysterol binding p	5e-05
cd13248		104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	1e-04
cd13255		110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	1e-04
cd13250		98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	2e-04
cd13276		117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	3e-04
cd01265		101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	0.002
cd13285		125	cd13285, PH_ORP1, Human Oxysterol binding protein	0.002

>gnl\|CDD\|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein	Back alignment and domain information

 Score =  404 bits (1041), Expect = e-135
 Identities = 156/347 (44%), Positives = 202/347 (58%), Gaps = 40/347 (11%)

Query: 441 PVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTE-GRQC 499
           PV+FNEPLS LQ+  EDLEY  L+D+A+   K+ + L R+L VAAFAVS Y+ST   R  
Sbjct: 1   PVFFNEPLSLLQRLAEDLEYPDLLDKAA---KEDDPLERMLYVAAFAVSTYSSTRKRRTK 57

Query: 500 KPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACH-----W----------KFWGRSI 544
           KPFNPLLGET+E    D G RF SE+VSHHP I A H     W          KFWG+SI
Sbjct: 58  KPFNPLLGETFELVREDGGFRFISEQVSHHPPISAYHAESKGWTLWGSSAPKSKFWGKSI 117

Query: 545 QLDPVGVLTLQFDD-GETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGN-YSCKLKFK 602
           ++ P G   L     GE + W+K TT I+NII GK Y + YG M I+ S   Y   ++FK
Sbjct: 118 EVKPEGHAHLTLKKTGEHYTWTKPTTHIHNIIFGKPYVELYGEMYIKNSTTGYKAVIEFK 177

Query: 603 EQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLW 662
           ++       ++V G V D + G+ +  + GKW+E++Y      +T         E  LLW
Sbjct: 178 KKGWFSGRKNEVEGKVYD-KKGKVLYTISGKWNESLYIKKVKSSTG--------EKKLLW 228

Query: 663 ERGKTVT--KTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKL 720
           +        +  Y  T FAI LNELTP L ++LPPTDSRLRPDQR LE G+Y+ A  EKL
Sbjct: 229 KANPLPPNSEKVYGFTKFAIPLNELTPELKEELPPTDSRLRPDQRALEEGDYDEAEEEKL 288

Query: 721 RLEQLQRQARQLQESG---WQPSWFCKDEDGC-----YRYMGGYWEA 759
           RLE+ QR+ R+ +E     W+P WF K +D       + Y GGYWE 
Sbjct: 289 RLEEKQRERRKEREEKGEEWKPRWFVKVKDPLTGEEDWVYKGGYWER 335

Length = 335

>gnl\|CDD\|241448 cd13294, PH_ORP_plant, Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241446 cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol binding protein homologs 1 and 2 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241437 cd13283, PH_GPBP, Goodpasture antigen binding protein Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241278 cd01247, PH_FAPP1_FAPP2, Four phosphate adaptor protein 1 and 2 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241447 cd13293, PH_CpORP2-like, Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|214574 smart00233, PH, Pleckstrin homology domain	Back alignment and domain information

>gnl\|CDD\|241444 cd13290, PH_ORP9, Human Oxysterol binding protein related protein 9 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241231 cd00821, PH, Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241445 cd13291, PH_ORP10_ORP11, Human Oxysterol binding protein (OSBP) related proteins 10 and 11 (ORP10 and ORP11) Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|215766 pfam00169, PH, PH domain	Back alignment and domain information

>gnl\|CDD\|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|241443 cd13289, PH_Osh3p_yeast, Yeast oxysterol binding protein homolog 3 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain	Back alignment and domain information

>gnl\|CDD\|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain	Back alignment and domain information

>gnl\|CDD\|241439 cd13285, PH_ORP1, Human Oxysterol binding protein related protein 1 Pleckstrin homology (PH) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		785
KOG1737		799	consensus Oxysterol-binding protein [Lipid transpo	100.0
KOG2209		445	consensus Oxysterol-binding protein [Signal transd	100.0
PF01237		354	Oxysterol_BP: Oxysterol-binding protein ; InterPro	100.0
KOG2210		392	consensus Oxysterol-binding protein [Signal transd	100.0
cd01247		91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.89
cd01265		95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.83
PF15413		112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.81
cd01251		103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.8
cd01233		100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.79
cd01264		101	PH_melted Melted pleckstrin homology (PH) domain.	99.76
cd01238		106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.75
cd01235		101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.75
cd01246		91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.72
cd01260		96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.72
cd01236		104	PH_outspread Outspread Pleckstrin homology (PH) do	99.69
PF15409		89	PH_8: Pleckstrin homology domain	99.69
cd01266		108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.68
cd01252		125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.68
cd01257		101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.67
cd01250		94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.64
cd01241		102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.63
cd01245		98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.55
cd01244		98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.52
PF00169		104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.52
KOG0690		516	consensus Serine/threonine protein kinase [Signal	99.5
cd01219		101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.48
cd01263		122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.42
cd01237		106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.37
KOG0930		395	consensus Guanine nucleotide exchange factor Cytoh	99.35
cd01254		121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.32
smart00233		102	PH Pleckstrin homology domain. Domain commonly fou	99.29
cd01253		104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.24
cd00821		96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.12
KOG1739		611	consensus Serine/threonine protein kinase GPBP [Si	99.11
cd01220		99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.09
KOG1090		1732	consensus Predicted dual-specificity phosphatase [	99.03
cd00900		99	PH-like Pleckstrin homology-like domain. Pleckstri	99.0
cd01230		117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	98.91
PF14593		104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.84
cd01234		117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.67
cd01256		110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.64
cd01218		104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.59
cd01249		104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.42
PF15410		119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	98.38
cd01243		122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.32
cd01262		89	PH_PDK1 3-Phosphoinositide dependent protein kinas	98.18
cd01261		112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.15
cd01242		112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.1
KOG0521		785	consensus Putative GTPase activating proteins (GAP	98.09
KOG0248		936	consensus Cytoplasmic protein Max-1, contains PH,	97.85
cd01239		117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.78
cd01259		114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	97.78
PTZ00267		478	NIMA-related protein kinase; Provisional	97.69
KOG3640		1116	consensus Actin binding protein Anillin [Cell cycl	97.67
PLN00188		719	enhanced disease resistance protein (EDR2); Provis	97.55
cd01258		108	PH_syntrophin Syntrophin pleckstrin homology (PH)	97.47
KOG2059		800	consensus Ras GTPase-activating protein [Signal tr	97.36
KOG3723		851	consensus PH domain protein Melted [Signal transdu	97.29
KOG1117		1186	consensus Rho- and Arf-GTPase activating protein A	97.25
PF12814		123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.24
cd01222		97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.22
PLN02866		1068	phospholipase D	97.12
cd01221		125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	96.97
cd01224		109	PH_Collybistin Collybistin pleckstrin homology (PH	96.93
cd01240		116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	96.47
KOG1451		812	consensus Oligophrenin-1 and related Rho GTPase-ac	96.45
PF15406		112	PH_6: Pleckstrin homology domain	96.4
KOG3751		622	consensus Growth factor receptor-bound proteins (G	96.24
KOG0932		774	consensus Guanine nucleotide exchange factor EFA6	96.06
KOG4424		623	consensus Predicted Rho/Rac guanine nucleotide exc	95.94
KOG0705		749	consensus GTPase-activating protein Centaurin gamm	95.53
PF15404		185	PH_4: Pleckstrin homology domain	95.32
cd01232		114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	95.24
PTZ00283		496	serine/threonine protein kinase; Provisional	95.21
KOG0248		936	consensus Cytoplasmic protein Max-1, contains PH,	95.05
KOG3543		1218	consensus Ca2+-dependent activator protein [Signal	94.93
cd01226		100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	94.92
cd01228		96	PH_BCR-related BCR (breakpoint cluster region)-rel	94.89
KOG3531		1036	consensus Rho guanine nucleotide exchange factor C	93.36
cd01227		133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	91.71
KOG1117		1186	consensus Rho- and Arf-GTPase activating protein A	91.1
cd01248		115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	90.56
PF15408		104	PH_7: Pleckstrin homology domain	90.35
cd01225		111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	89.16
cd01223		116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	88.68
KOG4807		593	consensus F-actin binding protein, regulates actin	82.51

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.2e-120  Score=1050.12  Aligned_cols=664  Identities=40%  Similarity=0.605  Sum_probs=528.3

Q ss_pred             CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccc-hhhhhhcccccccccc----c
Q 003938           80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGED-SIRFMRKANWSSHRLG----F  154 (785)
Q Consensus        80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~-~~~~~~~~~~~~~~~~----~  154 (785)
                      .+..++|||+||++++++|++|||+|.+|.|+||++++..+..+..+..+..+.|+.. ...++..... ....+    .
T Consensus        75 ~~~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~-~q~~~~~~~~  153 (799)
T KOG1737|consen   75 SGASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGS-CQIYLVELSK  153 (799)
T ss_pred             ccccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcccchhhcc-cchhhhhhhH
Confidence            3457899999999999999999999999999999999998888776666666777743 3233322211 11111    1


Q ss_pred             cccCCCcceeEEcc-ceEEEecCCCCCceEEEeCCeEEEEEcCC---H-HHHHHHHHHHHHHHHHccccccCC--CCCCC
Q 003938          155 AARQCKPFGEIHLK-VSSVRASKSDDKRLTIFTGTKTLHLRCIS---R-EDRTVWIDALQAAKDLFPRLLTST--DFSPS  227 (785)
Q Consensus       155 ~~~~~~p~G~I~L~-~~si~~s~~d~~~F~I~t~~Rt~~L~A~S---~-edr~~WI~AL~~a~~~~~~~~~~~--~~~~~  227 (785)
                      ........+.++|. ...+... ++..++.+.+.+.+.+++.+.   . +++..|+.+++.+..++++.....  ...+.
T Consensus       154 ~~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~  232 (799)
T KOG1737|consen  154 KLQRQGWLHALELAPLIAVEQT-SEYENENKSVMTKRIPLSIAVISVAQETREINVDVLRLLSSLPNLTGQLLLRELNAL  232 (799)
T ss_pred             HHhhcchhhhhhhccchhhhcc-ccccccccccccccccchhhhhcccccchhhhhhhhhhccccccchhhhhhhhhccc
Confidence            12233455666676 5556655 677788888888888887764   3 789999999999999887743221  11111


Q ss_pred             cc-----------cccchHHHHHHHhhcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003938          228 ED-----------VVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEAT  296 (785)
Q Consensus       228 ~~-----------~~~s~e~lr~rL~e~~~~e~~ik~~e~i~~~e~s~l~~~l~~l~~~~~~ll~~l~~Le~ek~~le~t  296 (785)
                      .+           +...++++.++++.++.+...+++||+++++++...+.++....+++..|.++++||++++.+||.+
T Consensus       233 ~~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~s~~s~~~~~q~~~l~~~l~~le~q~~~le~a  312 (799)
T KOG1737|consen  233 LEDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIESDASHSESEQRIRLQEALSALENQNTDLEVA  312 (799)
T ss_pred             cccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhhhhhhcchhhhhhhhhhHHHHHHhhhhhHHHH
Confidence            11           2334788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccccCCCCccccCccccccCCCCCCCCcccccCCCCCCCCCCCCccccccccccCc--ccccc---------
Q 003938          297 VVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSS--EALRS---------  365 (785)
Q Consensus       297 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~f~da~~~~~~--~~~~~---------  365 (785)
                      ++.....+........             +.. +. +   ......+..+++++||||.+.++.  ....+         
T Consensus       313 ~~~~~~~~~~~~~~~~-------------~~~-~~-~---~~~~~~~~~~e~~e~~da~s~~s~~~~~~~s~~~~e~~~s  374 (799)
T KOG1737|consen  313 LRRAHAAQAALDLSKV-------------TRL-SL-L---HEEESFSESDELTEQFDAESSLSDAQESLDSNSESENEGS  374 (799)
T ss_pred             HhHhhhhhhccCcccc-------------ccc-cc-c---ccccccccccccccccccccccchhhhccCCccccccccc
Confidence            8664443322211111             000 11 1   111334445666889999886541  00000         


Q ss_pred             cccccc-ccccccccc---ccccchhccccCccCcccccCCCCccccCCCCCCccCCCCchhHHHhhcccCCCCCccccc
Q 003938          366 VSYRSR-EAMGHACIY---DKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLP  441 (785)
Q Consensus       366 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rR~~lP~~~~~~~~~slwsilK~~iGkDLskIslP  441 (785)
                      ....+. ++++..+-.   ..+... ....+..+. .....+..+||++||+|..++.+++||+|||++||||||+|+||
T Consensus       375 ~~~~s~~s~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~P  452 (799)
T KOG1737|consen  375 EDEESYTSDISDNGSSDALSADGDK-SSQALNEKV-PSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSMP  452 (799)
T ss_pred             ccccccccccccCCCcccccccccc-ccccccccc-cccccccccccccCCCCcCcCCCccHHHHHhhcccccccccccc
Confidence            000000 000000000   000000 000011100 00114457899999999888999999999999999999999999


Q ss_pred             cccccccChHHhhhhcccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcccccCCcCCCCCCCCCCeEEEEcCCCCeEE
Q 003938          442 VYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRF  521 (785)
Q Consensus       442 v~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~d~~eR~~~V~aF~vS~y~~~~~r~~KPfNPlLGETfe~~~~d~g~r~  521 (785)
                      |+||||+|+|||++|+|||++|||+|+++   .||++||++|+||++|+|+.+..|.+|||||||||||||+++|+|+||
T Consensus       453 V~~nEP~S~LQr~~EdlEYs~LLd~A~~~---~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf  529 (799)
T KOG1737|consen  453 VEFNEPLSLLQRVAEDLEYSELLDKAANY---EDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRF  529 (799)
T ss_pred             eecCCcchHHHHhhhhccchhhhHHHHhc---CCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceee
Confidence            99999999999999999999999999996   789999999999999999999999999999999999999999999999


Q ss_pred             EEeecccCCCeeEEE-----E----------EEEeeEEEEEeceEEEEEecC-CceEEEeeeeeeeeeeeeceeeEeecc
Q 003938          522 FSEKVSHHPMIVACH-----W----------KFWGRSIQLDPVGVLTLQFDD-GETFQWSKVTTSIYNIILGKIYCDHYG  585 (785)
Q Consensus       522 iaEQVSHHPPIsA~~-----w----------kF~G~Si~i~~~G~~~l~f~~-ge~Y~~~~p~~~i~nii~G~~~~e~~G  585 (785)
                      |+|||||||||+|||     |          ||||+||+|.|.|.++|+|++ |++|+|.+|++.|+|||+|++|||++|
T Consensus       530 ~sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~g  609 (799)
T KOG1737|consen  530 FSEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYG  609 (799)
T ss_pred             eeeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeeccccccccc
Confidence            999999999999999     3          999999999999999999996 999999999999999999999999999


Q ss_pred             eEEEEcCC-C-ceEEEEEeecCccCCCCceEEEEEEeCCCCcEEEEEEEEEcceEEEEeCCCCCCCCCCCCCCCcEEEEe
Q 003938          586 TMRIRGSG-N-YSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWE  663 (785)
Q Consensus       586 ~~~I~~~t-g-~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~  663 (785)
                      .|.|+|++ + .+|.|+|++.|||+++.++|.|.|++ .+|++++++.|+|++.|++..++..+   ...+.....++|+
T Consensus       610 e~~i~n~~~~~~~c~L~F~~~~~~~~~~~ev~g~V~~-~s~~~~~~l~GkW~e~~~~~~~~~~~---~~~~~~~~~~iWk  685 (799)
T KOG1737|consen  610 EMEITNHTTGSDKCKLKFVKAGYFSRNAREVEGSVRN-KSGKKVEVLTGKWDESLYYFKVDKVG---LPEPETSEKLIWK  685 (799)
T ss_pred             cEEEecCCCCcceeEEEEeeecccCCCcceeEEEEeC-CCCceeEEEeeeehhhhhhccccccc---cccCCccceeeee
Confidence            99999964 5 56999999999999999999999999 99999999999999999987666432   3445567899999


Q ss_pred             cCCCCcccccCcccccccccCCCccccCCCCCCCCcchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc---CCCCCc
Q 003938          664 RGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPS  740 (785)
Q Consensus       664 ~~~~~~~~~y~ft~fa~~LNe~~~~~~~~l~pTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~  740 (785)
                      +++.|+..+|+||.||++||+++|.+.+.|||||||+|||||+||+|+|++|+.||.||||+||++|+.|+   ..|+|+
T Consensus       686 ~~~~Pkn~~y~ft~fai~LNel~p~l~~~lpPTDSRlRPDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~pr  765 (799)
T KOG1737|consen  686 ANDLPKNNKYNFTGFAIELNELTPHLKKLLPPTDSRLRPDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPR  765 (799)
T ss_pred             cCCCCCCcccccchhheecccCCchhhccCCCCCcccCcchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhccccccc
Confidence            99988768999999999999999999999999999999999999999999999999999999999988765   359999


Q ss_pred             eeEeCCCC--ceEEcCChhhhhccCCCCCCCccc
Q 003938          741 WFCKDEDG--CYRYMGGYWEAREKGDWGDIAEIF  772 (785)
Q Consensus       741 ~F~~~~~~--~~~y~g~Ywe~r~~~~w~~~~dif  772 (785)
                      ||.++.+.  .|+|+|+||++|++.+|..|+|||
T Consensus       766 wF~~~~~~~~~~~~ng~Ywe~r~~~d~~~~~~if  799 (799)
T KOG1737|consen  766 WFEKVKDPSTYWVYNGGYWEAREKQDWKDCPDIF  799 (799)
T ss_pred             cccccCCCcceEEecCchheeecccCccccccCC
Confidence            99999433  699999999999999999999998

>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related	Back alignment and domain information

>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	Back alignment and domain information

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C	Back alignment and domain information

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain	Back alignment and domain information

>cd01264 PH_melted Melted pleckstrin homology (PH) domain	Back alignment and domain information

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain	Back alignment and domain information

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain	Back alignment and domain information

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain	Back alignment and domain information

>PF15409 PH_8: Pleckstrin homology domain	Back alignment and domain information

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain	Back alignment and domain information

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain	Back alignment and domain information

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]	Back alignment and domain information

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain	Back alignment and domain information

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain	Back alignment and domain information

>smart00233 PH Pleckstrin homology domain	Back alignment and domain information

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain	Back alignment and domain information

>cd00821 PH Pleckstrin homology (PH) domain	Back alignment and domain information

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]	Back alignment and domain information

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain	Back alignment and domain information

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]	Back alignment and domain information

>cd00900 PH-like Pleckstrin homology-like domain	Back alignment and domain information

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain	Back alignment and domain information

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A	Back alignment and domain information

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain	Back alignment and domain information

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	Back alignment and domain information

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain	Back alignment and domain information

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A	Back alignment and domain information

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain	Back alignment and domain information

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]	Back alignment and domain information

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain	Back alignment and domain information

>PTZ00267 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PLN00188 enhanced disease resistance protein (EDR2); Provisional	Back alignment and domain information

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain	Back alignment and domain information

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]	Back alignment and domain information

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis	Back alignment and domain information

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain	Back alignment and domain information

>PLN02866 phospholipase D	Back alignment and domain information

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain	Back alignment and domain information

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain	Back alignment and domain information

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain	Back alignment and domain information

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF15406 PH_6: Pleckstrin homology domain	Back alignment and domain information

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]	Back alignment and domain information

>PF15404 PH_4: Pleckstrin homology domain	Back alignment and domain information

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain	Back alignment and domain information

>PTZ00283 serine/threonine protein kinase; Provisional	Back alignment and domain information

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]	Back alignment and domain information

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]	Back alignment and domain information

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain	Back alignment and domain information

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain	Back alignment and domain information

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]	Back alignment and domain information

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain	Back alignment and domain information

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain	Back alignment and domain information

>PF15408 PH_7: Pleckstrin homology domain	Back alignment and domain information

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain	Back alignment and domain information

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		785
2kcj_A		108	Solution Structure Of Fapp1 Ph Domain Length = 108		8e-07
3rcp_A		103	Crystal Structure Of The Fapp1 Pleckstrin Homology		1e-05

>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain Length = 108

Back alignment and structure

Iteration: 1

Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 41/128 (32%) Query: 87 ILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKAN 146 +LYKW NY GW+ RWFVL++G+LSYY +D + Sbjct: 12 VLYKWTNYLTGWQPRWFVLDNGILSYYD--------------------SQDDV------- 44 Query: 147 WSSHRLGFAARQCK-PFGEIHLKVSSVRASKSDDKRL-TIFTGTKTLHLRCISREDRTVW 204 CK G I + V ++ +D+ R+ I G + +++ ++ +R W Sbjct: 45 ------------CKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRW 92 Query: 205 IDALQAAK 212 + AL ++K Sbjct: 93 LVALGSSK 100

PyMOL of 2kcj

>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain Length = 103

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		785
1zhx_A		438	KES1 protein; oxysterol,sterol binding protein, li	1e-106
3rcp_A		103	Pleckstrin homology domain-containing family A ME;	4e-23
2rsg_A		94	Collagen type IV alpha-3-binding protein; pleckstr	7e-22
2d9x_A		120	Oxysterol binding protein-related protein 11; PH d	1e-20
2d9v_A		130	Pleckstrin homology domain-containing protein fami	5e-13
1fao_A		126	Dual adaptor of phosphotyrosine and 3- phosphoinos	5e-13
2cod_A		115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	9e-13
2dn6_A		115	KIAA0640 protein; PH domain, structural genomics,	1e-12
2da0_A		114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	4e-12
2dhk_A		119	TBC1 domain family member 2; PH domain, paris-1, s	1e-11
1wgq_A		109	FYVE, rhogef and PH domain containing 6; ethanol d	5e-11
2cof_A		107	Protein KIAA1914; PH domain, structural genomics,	7e-11
1eaz_A		125	Tandem PH domain containing protein-1; lipid-bindi	8e-11
2d9y_A		117	Pleckstrin homology domain-containing protein fami	1e-10
2yry_A		122	Pleckstrin homology domain-containing family A mem	5e-10
1fgy_A		127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	6e-10
3cxb_B		112	Pleckstrin homology domain-containing family M mem	7e-10
1v89_A		118	Hypothetical protein KIAA0053; pleckstrin homology	1e-09
3aj4_A		112	Pleckstrin homology domain-containing family B ME;	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1u5d_A		108	SKAP55, SRC kinase-associated phosphoprotein of 55	4e-09
1v5u_A		117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	4e-09
2rlo_A		128	Centaurin-gamma 1; split PH domain, alternative sp	5e-09
1upq_A		123	PEPP1; PH domain, phosphoinositide binding, signal	5e-09
1pls_A		113	Pleckstrin homology domain; phosphorylation; NMR {	7e-09
1btk_A		169	Bruton'S tyrosine kinase; transferase, PH domain,	1e-08
2y7b_A		134	Actin-binding protein anillin; cell cycle; 1.90A {	2e-08
1u5f_A		148	SRC-associated adaptor protein; PH domain of SKAP-	2e-08
2ys3_A		137	UNC-112-related protein 2; PH domain, kindlin-3, s	2e-08
2dkp_A		128	Pleckstrin homology domain-containing family A mem	3e-08
1v88_A		130	Oxysterol binding protein-related protein 8; vesic	3e-08
1v5p_A		126	Pleckstrin homology domain-containing, family A; T	5e-08
3tfm_A		228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-08
1wi1_A		126	Calcium-dependent activator protein for secretion,	6e-08
3lju_X		386	ARF-GAP with dual PH domain-containing protein 1;	1e-07
1x05_A		129	Pleckstrin; PH domain, structural genomics, NPPSFA	1e-07
1x1f_A		149	Signal-transducing adaptor protein 1; docking prot	2e-07
1unq_A		125	RAC-alpha serine/threonine kinase; transferase, pl	2e-07
2i5f_A		109	Pleckstrin; PH domain, protein-inositol phosphate	3e-07
4a6h_A		120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	3e-07
1u5e_A		211	SRC-associated adaptor protein; novel dimerization	8e-07
1x1g_A		129	Pleckstrin 2; PH domain, structural genomics, rike	1e-06
2lul_A		164	Tyrosine-protein kinase TEC; structural genomics,	1e-06
2q13_A		385	DCC-interacting protein 13 alpha; APPL1, BAR domai	2e-06
1wg7_A		150	Dedicator of cytokinesis protein 9; pleckstrin hom	3e-06
2p0d_A		129	RHO GTPase-activating protein 9; protein-phosphoin	4e-06
3pp2_A		124	RHO GTPase-activating protein 27; PH domain, GTPas	5e-06
2j59_M		168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	8e-06
4f7h_A		173	Fermitin family homolog 2; beta-barrel, membrane b	1e-04
1qqg_A		264	IRS-1, insulin receptor substrate 1; beta-sandwhic	4e-04

>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A Length = 438	Back alignment and structure

 Score =  331 bits (849), Expect = e-106
 Identities = 63/415 (15%), Positives = 126/415 (30%), Gaps = 83/415 (20%)

Query: 413 EPKEKEKPVGLWSIIK--DNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQAS-- 468
           +P +        S +K   +   DLS +  P +   P+S  +      E+  L  + S  
Sbjct: 4   DPSQYASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFI 63

Query: 469 -----------AWGKQGNDLMRILNVAAFAVSGYAS-------TEGRQCKPFNPLLGETY 510
                          +  +L R+L V  + +S   S       + G + KP NP LGE +
Sbjct: 64  NDDNYKEHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELF 123

Query: 511 EADYPDK------GLRFFSEKVSHHPMIVACH-------WKFWG-----------RSIQL 546
              + +K           SE+VSHHP + A          K  G             + +
Sbjct: 124 VGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTV 183

Query: 547 DPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSI 606
              G   L     E++  +     I  I++   + +  G   I+ S    C ++F  +  
Sbjct: 184 KQFGHTMLDI-KDESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGY 242

Query: 607 IDRNPHQVHGFVQDNRTG-----EKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLL 661
                +     +  +        + +  + G+W  +   +  +   +             
Sbjct: 243 FSGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------------ 290

Query: 662 WERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLR 721
                   +  Y+          + P        +          ++ G++ L    K  
Sbjct: 291 --------RLFYDAARIPAEHLNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTE 342

Query: 722 LEQLQRQ-ARQLQESG--WQPSWFCKDEDGC--------YRYMGGYWEAREKGDW 765
           LE+ QR+  ++ +  G  WQ  WF   +                 + +     + 
Sbjct: 343 LEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDTFLKLASALNL 397

PyMOL of 1zhx

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103	Back alignment and structure

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94	Back alignment and structure

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120	Back alignment and structure

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130	Back alignment and structure

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126	Back alignment and structure

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115	Back alignment and structure

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115	Back alignment and structure

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114	Back alignment and structure

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119	Back alignment and structure

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109	Back alignment and structure

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107	Back alignment and structure

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125	Back alignment and structure

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117	Back alignment and structure

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122	Back alignment and structure

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127	Back alignment and structure

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112	Back alignment and structure

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118	Back alignment and structure

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108	Back alignment and structure

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117	Back alignment and structure

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128	Back alignment and structure

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123	Back alignment and structure

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113	Back alignment and structure

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169	Back alignment and structure

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134	Back alignment and structure

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148	Back alignment and structure

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137	Back alignment and structure

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128	Back alignment and structure

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130	Back alignment and structure

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126	Back alignment and structure

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228	Back alignment and structure

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126	Back alignment and structure

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386	Back alignment and structure

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129	Back alignment and structure

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149	Back alignment and structure

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125	Back alignment and structure

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109	Back alignment and structure

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120	Back alignment and structure

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211	Back alignment and structure

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129	Back alignment and structure

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164	Back alignment and structure

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385	Back alignment and structure

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150	Back alignment and structure

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129	Back alignment and structure

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124	Back alignment and structure

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168	Back alignment and structure

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173	Back alignment and structure

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		785
1zhx_A		438	KES1 protein; oxysterol,sterol binding protein, li	100.0
2rsg_A		94	Collagen type IV alpha-3-binding protein; pleckstr	99.87
3rcp_A		103	Pleckstrin homology domain-containing family A ME;	99.84
2d9x_A		120	Oxysterol binding protein-related protein 11; PH d	99.81
1v88_A		130	Oxysterol binding protein-related protein 8; vesic	99.8
2dhk_A		119	TBC1 domain family member 2; PH domain, paris-1, s	99.8
1x1f_A		149	Signal-transducing adaptor protein 1; docking prot	99.8
2cod_A		115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.78
2da0_A		114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.77
1wi1_A		126	Calcium-dependent activator protein for secretion,	99.77
2d9v_A		130	Pleckstrin homology domain-containing protein fami	99.77
1wgq_A		109	FYVE, rhogef and PH domain containing 6; ethanol d	99.77
1pls_A		113	Pleckstrin homology domain; phosphorylation; NMR {	99.77
1v5u_A		117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.77
4a6h_A		120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.76
3aj4_A		112	Pleckstrin homology domain-containing family B ME;	99.76
1eaz_A		125	Tandem PH domain containing protein-1; lipid-bindi	99.75
2dkp_A		128	Pleckstrin homology domain-containing family A mem	99.75
2dn6_A		115	KIAA0640 protein; PH domain, structural genomics,	99.75
1v89_A		118	Hypothetical protein KIAA0053; pleckstrin homology	99.75
1fgy_A		127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.75
1fao_A		126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.75
1btk_A		169	Bruton'S tyrosine kinase; transferase, PH domain,	99.74
2i5f_A		109	Pleckstrin; PH domain, protein-inositol phosphate	99.74
2yry_A		122	Pleckstrin homology domain-containing family A mem	99.74
1upq_A		123	PEPP1; PH domain, phosphoinositide binding, signal	99.73
2rlo_A		128	Centaurin-gamma 1; split PH domain, alternative sp	99.73
2d9y_A		117	Pleckstrin homology domain-containing protein fami	99.73
1v5p_A		126	Pleckstrin homology domain-containing, family A; T	99.72
1x05_A		129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.72
1u5d_A		108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.72
2coc_A		112	FYVE, rhogef and PH domain containing protein 3; s	99.72
2w2x_D		124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.72
1unq_A		125	RAC-alpha serine/threonine kinase; transferase, pl	99.72
1btn_A		106	Beta-spectrin; signal transduction protein; HET: I	99.71
2lul_A		164	Tyrosine-protein kinase TEC; structural genomics,	99.71
2cof_A		107	Protein KIAA1914; PH domain, structural genomics,	99.71
2y7b_A		134	Actin-binding protein anillin; cell cycle; 1.90A {	99.71
1x1g_A		129	Pleckstrin 2; PH domain, structural genomics, rike	99.7
1wg7_A		150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.7
3cxb_B		112	Pleckstrin homology domain-containing family M mem	99.69
1u5f_A		148	SRC-associated adaptor protein; PH domain of SKAP-	99.69
2p0d_A		129	RHO GTPase-activating protein 9; protein-phosphoin	99.68
1wjm_A		123	Beta-spectrin III; PH domain, signal transduction,	99.68
1dyn_A		125	Dynamin; signal transduction protein; 2.20A {Homo	99.68
1u5e_A		211	SRC-associated adaptor protein; novel dimerization	99.66
2j59_M		168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.65
3tfm_A		228	Myosin X; split PH domain, motor protein; 2.53A {R	99.63
2r09_A		347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.6
3lju_X		386	ARF-GAP with dual PH domain-containing protein 1;	99.6
3a8p_A		263	T-lymphoma invasion and metastasis-inducing protei	99.59
1qqg_A		264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.56
1dro_A		122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.56
2q13_A		385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.56
4h8s_A		407	DCC-interacting protein 13-beta; BAR domain, pleck	99.55
3lju_X		386	ARF-GAP with dual PH domain-containing protein 1;	99.53
3tca_A		291	Amyloid beta A4 precursor protein-binding family 1	99.5
3pp2_A		124	RHO GTPase-activating protein 27; PH domain, GTPas	99.46
2rov_A		117	RHO-associated protein kinase 2; ATP-binding, coil	99.45
2dtc_A		126	RAL guanine nucleotide exchange factor ralgps1A; P	99.45
2ys3_A		137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.43
2fjl_A		150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.39
2d9w_A		127	Docking protein 2; PH domain, structural genomics,	99.35
4f7h_A		173	Fermitin family homolog 2; beta-barrel, membrane b	99.28
4ejn_A		446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.28
4bbk_A		165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.25
1w1g_A		151	HPDK1, 3-phosphoinositide dependent protein kinase	99.21
3a8n_A		279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.14
3hk0_A		256	Growth factor receptor-bound protein 10; GRB10, RA	99.08
4gmv_A		281	RAS-associated and pleckstrin homology domains-CO	99.03
2coa_A		125	Protein kinase C, D2 type; protein kinase D2, PH d	98.42
2d9z_A		129	Protein kinase C, NU type; PH domain, structural g	98.33
3tfm_A		228	Myosin X; split PH domain, motor protein; 2.53A {R	98.09
2lg1_A		185	A-kinase anchor protein 13; metal binding protein;	97.76
3ml4_A		224	Protein DOK-7; tyrosine phosphorylation, adapter p	97.48
3mpx_A		434	FYVE, rhogef and PH domain-containing protein 5; s	97.47
3t06_A		418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.4
1xcg_A		368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.29
1zc3_B		113	Exocyst complex protein EXO84; exocytosis, small G	97.28
1v61_A		132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.25
3qwm_A		140	Iqsec1, IQ motif and SEC7 domain-containing protei	97.24
3p6a_A		377	RHO guanine nucleotide exchange factor 1; regulati	97.21
2dfk_A		402	Collybistin II; DH domain, PH domain, cell cycle;	97.19
2pz1_A		466	RHO guanine nucleotide exchange factor 4; helical	97.19
2vrw_B		406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.15
1mai_A		131	Phospholipase C delta-1; pleckstrin, inositol tris	97.13
3ky9_A		587	Proto-oncogene VAV; calponin homology domain, DBL	97.1
1kz7_A		353	Guanine nucleotide exchange factor DBS; guanine nu	97.07
1dbh_A		354	Protein (human SOS 1); guanine nucleotide exchange	97.06
3odw_A		536	RHO guanine nucleotide exchange factor 1; regulati	97.03
1txd_A		385	RHO guanine nucleotide exchange factor 12; helical	97.0
1v5m_A		136	SH2 and PH domain-containing adapter protein APS;	96.97
1nty_A		311	Triple functional domain protein; DBL, pleckstrin,	96.75
2rr3_B		47	OSBP, oxysterol-binding protein 1; lipid transport	96.28
2rgn_B		354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	96.27
2z0q_A		346	XPLN, RHO guanine nucleotide exchange factor 3; DH	96.08
3jzy_A		510	Intersectin 2; C2 domain, structural genomics cons	95.96
1foe_A		377	T-lymphoma invasion and metastasis inducing protei	94.66
3v5w_A		689	G-protein coupled receptor kinase 2; inhibitor com	94.33
3ksy_A		1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	94.15
1fho_A		119	UNC-89; pleckstrin homology domain, electrostatics	85.9
1z87_A		263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	82.38
3zvr_A		772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	82.13
3qr0_A		816	Phospholipase C-beta (PLC-beta); PH domain, EF han	80.9

>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A	Back alignment and structure

Probab=100.00  E-value=6.3e-81  Score=697.67  Aligned_cols=305  Identities=22%  Similarity=0.376  Sum_probs=268.1

Q ss_pred             CCchhHHHhhcccC---CCCCccccccccccccChHHhhhhcccchHHHHHHHhcC-------CCCC------HHHHHHH
Q 003938          419 KPVGLWSIIKDNIG---KDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWG-------KQGN------DLMRILN  482 (785)
Q Consensus       419 ~~~slwsilK~~iG---kDLskIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~-------~~~d------~~eR~~~  482 (785)
                      .+.++|+++.++||   +|||+|+|||+||||+|+||+++++|+|++||+.|+...       +..|      |++||++
T Consensus         9 ~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~~   88 (438)
T 1zhx_A            9 ASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLA   88 (438)
T ss_dssp             TTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHHH
T ss_pred             ccccHHHHHHHHhhhcCCChhhcccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHHHH
Confidence            56899986666665   599999999999999999999999999999999998641       1238      9999999


Q ss_pred             HHHHHhhhccccc-------CCcCCCCCCCCCCeEEEEcCC-----CC-eEEEEeecccCCCeeEEE-------E-----
Q 003938          483 VAAFAVSGYASTE-------GRQCKPFNPLLGETYEADYPD-----KG-LRFFSEKVSHHPMIVACH-------W-----  537 (785)
Q Consensus       483 V~aF~vS~y~~~~-------~r~~KPfNPlLGETfe~~~~d-----~g-~r~iaEQVSHHPPIsA~~-------w-----  537 (785)
                      |++|+||+|++..       ++++|||||||||||+|.|+|     .| ++||||||||||||||||       |     
T Consensus        89 V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g~  168 (438)
T 1zhx_A           89 VTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGY  168 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred             HHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEEEE
Confidence            9999999997532       688999999999999999986     46 899999999999999999       2     


Q ss_pred             -----EEEee-EEEEEeceEEEEEecCCceEEEeeeeeeeeeeeeceeeEeecceEEEEcCCCceEEEEEeecCccCCCC
Q 003938          538 -----KFWGR-SIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNP  611 (785)
Q Consensus       538 -----kF~G~-Si~i~~~G~~~l~f~~ge~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~~tg~~~~l~F~~~~~~~~~~  611 (785)
                           ||||+ ||+|.+.|.++|+|. ||+|+|++|+++|+|||+|++|+|++|+|.|+|+||++|+|+|+++||||++.
T Consensus       169 ~~~kskF~G~~Sv~v~~~G~~~l~l~-~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~~tg~~~~l~F~~kg~f~g~~  247 (438)
T 1zhx_A          169 NQIKASFTKSLMLTVKQFGHTMLDIK-DESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKK  247 (438)
T ss_dssp             EEEEEEECTTCCEEEEEECCEEEEET-TEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSSS
T ss_pred             eeeEEEEcCceEEEEEcceEEEEEEC-CcEEEEecCcEEEEEEEecceeEecCCeEEEEcCCCCEEEEEEcCCCCcCCCc
Confidence                 89999 999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCC-----CCcEEEEEEEEEcceEEEEeCCCCCCCCCCCCCCCcEEEEecCCCCcccccCcccccccccCCC
Q 003938          612 HQVHGFVQDNR-----TGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELT  686 (785)
Q Consensus       612 ~~V~G~V~~~~-----~g~~~~~i~G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~~~~~~~~~~y~ft~fa~~LNe~~  686 (785)
                      |.|+|.|++..     +|+++++|.|+|++.|++.+....         ....++|++++.+.      +++     .+.
T Consensus       248 n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~---------~~~~~~~~~~~~~~------~~~-----~v~  307 (438)
T 1zhx_A          248 NSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK---------EESRLFYDAARIPA------EHL-----NVK  307 (438)
T ss_dssp             SEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG---------GGCEEEEETTTSCC------CCC-----BCC
T ss_pred             cEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCC---------ccceEEeccCCCCC------ccc-----cCC
Confidence            99999999831     678999999999999999765431         12578999987654      111     123


Q ss_pred             ccccCCCCCCCCcc--hhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc---CCCCCceeEeCC
Q 003938          687 PGLLDKLPPTDSRL--RPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPSWFCKDE  746 (785)
Q Consensus       687 ~~~~~~l~pTDSR~--RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~~F~~~~  746 (785)
                      |  .+.++|||||+  |||+|||++||++.|++||.+|||+||++||+|+   ..|+|+||++.+
T Consensus       308 p--~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~  370 (438)
T 1zhx_A          308 P--LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFD  370 (438)
T ss_dssp             C--GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEE
T ss_pred             C--hhhCCCcccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECC
Confidence            2  35679999997  8999999999999999999999999999998765   579999999873

PyMOL of 1zhx

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}	Back alignment and structure

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A	Back alignment and structure

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1	Back alignment and structure

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1	Back alignment and structure

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A	Back alignment and structure

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A	Back alignment and structure

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}	Back alignment and structure

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*	Back alignment and structure

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A	Back alignment and structure

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*	Back alignment and structure

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A	Back alignment and structure

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*	Back alignment and structure

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}	Back alignment and structure

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1	Back alignment and structure

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A	Back alignment and structure

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A	Back alignment and structure

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A	Back alignment and structure

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A	Back alignment and structure

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}	Back alignment and structure

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}	Back alignment and structure

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B	Back alignment and structure

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A	Back alignment and structure

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*	Back alignment and structure

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A	Back alignment and structure

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A	Back alignment and structure

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A	Back alignment and structure

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}	Back alignment and structure

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*	Back alignment and structure

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*	Back alignment and structure

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A	Back alignment and structure

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*	Back alignment and structure

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1	Back alignment and structure

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A	Back alignment and structure

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}	Back alignment and structure

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*	Back alignment and structure

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}	Back alignment and structure

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}	Back alignment and structure

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}	Back alignment and structure

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}	Back alignment and structure

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1	Back alignment and structure

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*	Back alignment and structure

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*	Back alignment and structure

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}	Back alignment and structure

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A	Back alignment and structure

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}	Back alignment and structure

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}	Back alignment and structure

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A	Back alignment and structure

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1	Back alignment and structure

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}	Back alignment and structure

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}	Back alignment and structure

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}	Back alignment and structure

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}	Back alignment and structure

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*	Back alignment and structure

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*	Back alignment and structure

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1	Back alignment and structure

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}	Back alignment and structure

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A	Back alignment and structure

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1	Back alignment and structure

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D	Back alignment and structure

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A	Back alignment and structure

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1	Back alignment and structure

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A	Back alignment and structure

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A	Back alignment and structure

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A	Back alignment and structure

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A	Back alignment and structure

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A	Back alignment and structure

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1	Back alignment and structure

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A	Back alignment and structure

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}	Back alignment and structure

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}	Back alignment and structure

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A	Back alignment and structure

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B	Back alignment and structure

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1	Back alignment and structure

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A	Back alignment and structure

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A	Back alignment and structure

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1	Back alignment and structure

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}	Back alignment and structure

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A	Back alignment and structure

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		785
d1zhxa1		433	d.338.1.1 (A:2-434) Oxysterol-binding protein homo	1e-85
d1fgya_		127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	9e-15
d1btka_		169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-12
d1eaza_		103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-11
d1v89a_		118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	1e-10
d1faoa_		100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	6e-10
d1v88a_		130	b.55.1.1 (A:) Oxysterol binding protein-related pr	5e-09
d1u5da1		106	b.55.1.1 (A:108-213) Src kinase-associated phospho	8e-08
d1plsa_		113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	1e-07
d1x1ga1		116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	2e-07
d2i5fa1		104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	3e-07
d1droa_		122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	3e-07
d1v5ua_		117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	1e-06
d2fjla1		101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	3e-06
d2j59m1		133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	6e-06
d1u5ea1		209	b.55.1.1 (A:14-222) Src-associated adaptor protein	1e-05
d2coda1		102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	1e-05
d1wgqa_		109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	3e-05
d1unqa_		118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	3e-05
d2cofa1		95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	6e-05
d1wi1a_		126	b.55.1.1 (A:) Calcium-dependent activator protein	9e-05
d1upqa_		107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	1e-04
d2coca1		99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	2e-04
d1v5pa_		126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	3e-04
d1u5fa1		111	b.55.1.1 (A:109-219) Src-associated adaptor protei	4e-04
d1qqga1		103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	4e-04
d1btna_		106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	7e-04
d1omwa2		119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	0.001
d2dyna_		111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	0.003

>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 433	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Oxysterol-binding protein-like
superfamily: Oxysterol-binding protein-like
family: Oxysterol-binding protein
domain: Oxysterol-binding protein homolog 4, KES1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  276 bits (707), Expect = 1e-85
 Identities = 68/379 (17%), Positives = 123/379 (32%), Gaps = 66/379 (17%)

Query: 421 VGLWSIIKDNI---GKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASA-------- 469
              W+    +I     DLS +  P +   P+S  +      E+  L  + S         
Sbjct: 6   SSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKE 65

Query: 470 -----WGKQGNDLMRILNVAAFAVSGYAS-------TEGRQCKPFNPLLGETYEADYPDK 517
                   +  +L R+L V  + +S   S       + G + KP NP LGE +   + +K
Sbjct: 66  HCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENK 125

Query: 518 ------GLRFFSEKVSHHPMIVACH-------WKFWG-----------RSIQLDPVGVLT 553
                      SE+VSHHP + A          K  G             + +   G   
Sbjct: 126 EHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTM 185

Query: 554 LQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNPHQ 613
           L   D E++  +     I  I++   + +  G   I+ S    C ++F  +       + 
Sbjct: 186 LDIKD-ESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNS 244

Query: 614 VHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRY 673
               +  +    K        ++A+Y + G  +   K               K  ++  Y
Sbjct: 245 FKARIYKDSKDSK------DKEKALYTISGQWSGSSKIIKA---------NKKEESRLFY 289

Query: 674 NLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQAR-QL 732
           +          + P        +          ++ G++ L    K  LE+ QR+ R + 
Sbjct: 290 DAARIPAEHLNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEE 349

Query: 733 QESG--WQPSWFCKDEDGC 749
           +  G  WQ  WF   +   
Sbjct: 350 EAKGISWQRRWFKDFDYSV 368

PyMOL of d1zhxa1

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127	Back information, alignment and structure

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169	Back information, alignment and structure

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100	Back information, alignment and structure

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130	Back information, alignment and structure

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106	Back information, alignment and structure

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113	Back information, alignment and structure

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116	Back information, alignment and structure

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104	Back information, alignment and structure

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122	Back information, alignment and structure

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117	Back information, alignment and structure

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101	Back information, alignment and structure

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133	Back information, alignment and structure

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209	Back information, alignment and structure

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109	Back information, alignment and structure

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95	Back information, alignment and structure

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126	Back information, alignment and structure

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107	Back information, alignment and structure

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99	Back information, alignment and structure

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126	Back information, alignment and structure

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111	Back information, alignment and structure

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106	Back information, alignment and structure

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119	Back information, alignment and structure

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		785
d1zhxa1		433	Oxysterol-binding protein homolog 4, KES1 {Baker's	100.0
d1faoa_		100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.79
d2coaa1		112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.74
d1eaza_		103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2coda1		102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.73
d1v89a_		118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.73
d1btka_		169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.72
d1fgya_		127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1x1fa1		136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.71
d1wi1a_		126	Calcium-dependent activator protein for secretion,	99.71
d1v88a_		130	Oxysterol binding protein-related protein 8 (ORP-8	99.7
d1omwa2		119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.7
d2coca1		99	FYVE, RhoGEF and PH domain containing protein 3, F	99.7
d2fjla1		101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.7
d1v5ua_		117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.69
d1wgqa_		109	FYVE, RhoGEF and PH domain containing protein 6, F	99.69
d2j59m1		133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.68
d1upqa_		107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.67
d1v5pa_		126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d1w1ha_		147	3-phosphoinositide dependent protein kinase-1 {Hum	99.66
d1plsa_		113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2cofa1		95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2dyna_		111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1qqga1		103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.64
d2i5fa1		104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2elba2		101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.64
d1wg7a_		150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.62
d1u5da1		106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.62
d1unqa_		118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.61
d1u5fa1		111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.6
d1wjma_		123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.58
d1u5ea1		209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.56
d1x1ga1		116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1btna_		106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.55
d1droa_		122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.52
d1v5ma_		136	SH2 and PH domain-containing adapter protein APS {	99.45
d1v61a_		132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.87
d2dfka2		162	Rho guanine nucleotide exchange factor 9, Collybis	98.7
d1maia_		119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.36
d1zc3b1		109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.16
d1xcga2		140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.88
d1dbha2		133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.86
d1ki1b2		142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.82
d1ntya2		121	Triple functional domain protein TRIO {Human (Homo	97.75
d1txda2		114	Rho guanine nucleotide exchange factor 12 {Human (	97.58
d1fhoa_		119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.5
d1kz7a2		147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.11
d2adza1		105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	94.34
d2zkmx3		131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	90.59

>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Oxysterol-binding protein-like
superfamily: Oxysterol-binding protein-like
family: Oxysterol-binding protein
domain: Oxysterol-binding protein homolog 4, KES1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-76  Score=660.46  Aligned_cols=311  Identities=21%  Similarity=0.333  Sum_probs=258.7

Q ss_pred             CCchhH-HHhhcc--cCCCCCccccccccccccChHHhhhhcccchHHHHHHHhcCC-------------CCCHHHHHHH
Q 003938          419 KPVGLW-SIIKDN--IGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGK-------------QGNDLMRILN  482 (785)
Q Consensus       419 ~~~slw-silK~~--iGkDLskIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~-------------~~d~~eR~~~  482 (785)
                      .+.|+| ++||..  +|+|||+|+|||+||||+|+|||++++|+|++||+.|+.+..             ..||++||++
T Consensus         4 ~~~s~w~~flk~i~s~~~DLs~is~P~~i~eP~S~Le~~a~~~ey~~Ll~~aa~~~d~~~~~~~~~~~~~e~~p~eRm~~   83 (433)
T d1zhxa1           4 ASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLA   83 (433)
T ss_dssp             TTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHHH
T ss_pred             ccccHHHHHHHHHhhcCCccceeeeCceecccccHHHHHHHHHhhHHHHHHHhhcccccccccccccccccCCHHHHHHH
Confidence            357889 566653  689999999999999999999999999999999999997521             3459999999


Q ss_pred             HHHHHhhhccc-------ccCCcCCCCCCCCCCeEEEEcCCC------CeEEEEeecccCCCeeEEE-------E-----
Q 003938          483 VAAFAVSGYAS-------TEGRQCKPFNPLLGETYEADYPDK------GLRFFSEKVSHHPMIVACH-------W-----  537 (785)
Q Consensus       483 V~aF~vS~y~~-------~~~r~~KPfNPlLGETfe~~~~d~------g~r~iaEQVSHHPPIsA~~-------w-----  537 (785)
                      |++|+||+|++       +.++.+|||||||||||+|.|+|+      +++||||||||||||+|||       |     
T Consensus        84 V~~f~lS~~~~~~~~~~~~~~~~kKPfNPiLGETfe~~~~d~~~~~~~~~~~iaEQVSHHPPIsA~~~~~~~~~~~~~g~  163 (433)
T d1zhxa1          84 VTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGY  163 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred             HHHHHHHHhhhhhcccccccccccCCCCCcccceEEEEEecCCCCcCCcEEEEEeCCCCCCcceeEEEEcCCCCEEEEEE
Confidence            99999999985       457899999999999999999874      5899999999999999998       3     


Q ss_pred             -----EEEeeEEEEEeceEEEEEec-CCceEEEeeeeeeeeeeeeceeeEeecceEEEEcCCCceEEEEEeecCccCCCC
Q 003938          538 -----KFWGRSIQLDPVGVLTLQFD-DGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGSGNYSCKLKFKEQSIIDRNP  611 (785)
Q Consensus       538 -----kF~G~Si~i~~~G~~~l~f~-~ge~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~~tg~~~~l~F~~~~~~~~~~  611 (785)
                           +| |.++.|.+.|..++.|. .||+|+|++|++.|+|||+|++|+|++|+|.|+|+||+.|+|+|+++|||+++.
T Consensus       164 ~~~~~~f-~~s~~i~~~g~~~~~l~~~~E~Y~~~~P~~~i~gii~G~~~vE~~G~~~I~~~tg~~a~i~f~~kg~fsg~~  242 (433)
T d1zhxa1         164 NQIKASF-TKSLMLTVKQFGHTMLDIKDESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKK  242 (433)
T ss_dssp             EEEEEEE-CTTCCEEEEEECCEEEEETTEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSSS
T ss_pred             eeeeeee-cceEEEEEcceEEEEEEecCcEEEEecCCEEEEEEEcCCceEEecceEEEEeCCCCEEEEEEcCCCccCCCc
Confidence                 45 44555666665555554 589999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCC------cEEEEEEEEEcceEEEEeCCCCCCCCCCCCCCCcEEEEecCCCCcccccCcccccccccCC
Q 003938          612 HQVHGFVQDNRTG------EKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNEL  685 (785)
Q Consensus       612 ~~V~G~V~~~~~g------~~~~~i~G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~~~~~~~~~~y~ft~fa~~LNe~  685 (785)
                      |.|+|.|++ .+|      +.+|+|.|+|++.+.+......         .+..++|+.++.           ++.+|++
T Consensus       243 ~~v~g~I~~-~~~~~~~~~~~l~~i~G~W~~~~~~~~~~~~---------~~~~~~~d~~~~-----------~~~~~~~  301 (433)
T d1zhxa1         243 NSFKARIYK-DSKDSKDKEKALYTISGQWSGSSKIIKANKK---------EESRLFYDAARI-----------PAEHLNV  301 (433)
T ss_dssp             SEEEEEEES-STTGGGCGGGCSEEEEEETTSEEEEEETTCG---------GGCEEEEETTTS-----------CCCCCBC
T ss_pred             ceEEEEEEe-CCCCCccccceeEEEecccCceEEEEeCCCC---------CcceEEEeCCcC-----------CcccccC
Confidence            999999998 444      4789999999999998765431         245677776654           3445566


Q ss_pred             CccccCCCCCCCCcchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc---CCCCCceeEeCCCCceE
Q 003938          686 TPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPSWFCKDEDGCYR  751 (785)
Q Consensus       686 ~~~~~~~l~pTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~~F~~~~~~~~~  751 (785)
                      .|.....++++|+|+|||+|||++||+|.|+++|.+|||+||++||+|+   ..|+|+||++.+++.|.
T Consensus       302 ~p~e~~~p~eS~~~wr~d~~ale~Gd~d~A~~eK~~LEe~QR~~Rk~re~~g~~w~Pr~F~~~~~~~~~  370 (433)
T d1zhxa1         302 KPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTP  370 (433)
T ss_dssp             CCGGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEECSSSC
T ss_pred             CCcccCCCCCCccccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcEeccCCCCCc
Confidence            5532223334555579999999999999999999999999999998765   56999999998544333

PyMOL of d1zhxa1

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}	Back information, alignment and structure

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}	Back information, alignment and structure

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}	Back information, alignment and structure

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure